From d0461dbe98b89d871bfb332aa3f592118372ba2e Mon Sep 17 00:00:00 2001
From: Robrecht Cannoodt <rcannood@gmail.com>
Date: Fri, 26 Jan 2024 14:07:47 +0100
Subject: [PATCH] add arriba test data script

---
 src/arriba/test_data/README.md | 13 -------------
 src/arriba/test_data/script.sh | 10 ++++++++++
 2 files changed, 10 insertions(+), 13 deletions(-)
 delete mode 100644 src/arriba/test_data/README.md
 create mode 100755 src/arriba/test_data/script.sh

diff --git a/src/arriba/test_data/README.md b/src/arriba/test_data/README.md
deleted file mode 100644
index 8cfb28f6..00000000
--- a/src/arriba/test_data/README.md
+++ /dev/null
@@ -1,13 +0,0 @@
-# arriba test data
-
-Test data was obtained from https://github.com/snakemake/snakemake-wrappers/tree/master/bio/arriba/test.
-
-__author__ = "Jan Forster"
-__copyright__ = "Copyright 2019, Jan Forster"
-__email__ = "j.forster@dkfz.de"
-__license__ = "MIT"
-
-```bash
-git clone --depth 1 --single-branch --branch master https://github.com/snakemake/snakemake-wrappers /tmp/snakemake-wrappers
-cp -r /tmp/snakemake-wrappers/bio/arriba/test/* src/arriba/test_data
-```
\ No newline at end of file
diff --git a/src/arriba/test_data/script.sh b/src/arriba/test_data/script.sh
new file mode 100755
index 00000000..e5bbcf2c
--- /dev/null
+++ b/src/arriba/test_data/script.sh
@@ -0,0 +1,10 @@
+# arriba test data
+
+# Test data was obtained from https://github.com/snakemake/snakemake-wrappers/tree/master/bio/arriba/test
+
+if [ ! -d /tmp/snakemake-wrappers ]; then
+  git clone --depth 1 --single-branch --branch master https://github.com/snakemake/snakemake-wrappers /tmp/snakemake-wrappers
+fi
+
+cp -r /tmp/snakemake-wrappers/bio/arriba/test/* src/arriba/test_data
+