From aedb01d9697fd0660afb5e4742b9b27090edefa9 Mon Sep 17 00:00:00 2001
From: Sai Nirmayi Yasa <92786623+sainirmayi@users.noreply.github.com>
Date: Wed, 31 Jan 2024 09:22:14 +0100
Subject: [PATCH] use $meta_tmp_dir

Co-authored-by: Robrecht Cannoodt <rcannood@gmail.com>
---
 src/featurecounts/script.sh | 4 +---
 1 file changed, 1 insertion(+), 3 deletions(-)

diff --git a/src/featurecounts/script.sh b/src/featurecounts/script.sh
index b0efb2c5..f2270c8a 100644
--- a/src/featurecounts/script.sh
+++ b/src/featurecounts/script.sh
@@ -3,9 +3,7 @@
 ## VIASH START
 ## VIASH END
 
-if [[ $par_tmpdir ]] && [[ ! -d "$par_tmpdir" ]]; then
-    mkdir -p $tmpDir
-fi
+tmp_dir=$(mktemp -d -p "$meta_temp_dir" "${meta_functionality_name}_XXXXXXXXX")
 
 if [[ $par_r_path ]] && [[ ! -d "$par_r_path" ]]; then
     mkdir -p $par_r_path