diff --git a/src/busco/busco/config.vsh.yaml b/src/busco/busco/config.vsh.yaml index 2e9740cf..625bf0b3 100644 --- a/src/busco/busco/config.vsh.yaml +++ b/src/busco/busco/config.vsh.yaml @@ -25,10 +25,10 @@ functionality: required: true description: | Specify which BUSCO analysis mode to run. There are three valid modes: - + - geno or genome, for genome assemblies (DNA) - tran or transcriptome, for transcriptome assemblies (DNA) - - prot or proteins, for annotated gene sets (protein) + - prot or protein, for annotated gene sets (protein) example: protein - name: --lineage_dataset alternatives: ["-l"] diff --git a/src/busco/busco/test.sh b/src/busco/busco/test.sh index 1d6ce29f..a5f1546d 100644 --- a/src/busco/busco/test.sh +++ b/src/busco/busco/test.sh @@ -4,7 +4,7 @@ echo "> Running busco" "$meta_executable" \ --input $test_dir/protein.fasta \ - --mode protein \ + --mode proteins \ --lineage_dataset stramenopiles_odb10 \ --output_dir output