diff --git a/src/lofreq/call/config.vsh.yaml b/src/lofreq/call/config.vsh.yaml index 21528ea3..97b98e6f 100644 --- a/src/lofreq/call/config.vsh.yaml +++ b/src/lofreq/call/config.vsh.yaml @@ -11,9 +11,11 @@ functionality: LoFreq* is very sensitive; most notably, it is able to predict variants below the average base-call quality (i.e. sequencing error rate). Each variant call is assigned a p-value which allows for rigorous false positive control. Even though it uses no approximations or heuristics, it is very efficient due to several runtime optimizations and also provides a (pseudo-)parallel implementation. LoFreq* is generic and fast enough to be applied to high-coverage data and large genomes. On a single processor it takes a minute to analyze Dengue genome sequencing data with nearly 4000X coverage, roughly one hour to call SNVs on a 600X coverage E.coli genome and also roughly an hour to run on a 100X coverage human exome dataset. info: keywords: [ "variant calling", "low frequancy variant calling", "lofreq", "lofreq/call"] - homepage: https://csb5.github.io/lofreq/ - documentation: https://csb5.github.io/lofreq/commands/ - reference: doi:10.1093/nar/gks918 + links: + homepage: https://csb5.github.io/lofreq/ + documentation: https://csb5.github.io/lofreq/commands/ + reference: + doi: 10.1093/nar/gks918 license: "MIT" requirements: commands: [ lofreq ] diff --git a/src/lofreq/indelqual/config.vsh.yaml b/src/lofreq/indelqual/config.vsh.yaml index 561c5a17..1d04144e 100644 --- a/src/lofreq/indelqual/config.vsh.yaml +++ b/src/lofreq/indelqual/config.vsh.yaml @@ -12,9 +12,11 @@ functionality: Do not realign your BAM file afterwards! info: keywords: [ "bam", "indel", "qualities", "indelqual", "lofreq", "lofreq/indelqual"] - homepage: https://csb5.github.io/lofreq/ - documentation: https://csb5.github.io/lofreq/commands/ - reference: doi:10.1093/nar/gks918 + links: + homepage: https://csb5.github.io/lofreq/ + documentation: https://csb5.github.io/lofreq/commands/ + reference: + doi: 10.1093/nar/gks918 license: "MIT" requirements: commands: [ lofreq ]