From 654efa45d149fd9694abae1d1414861b6486fa3a Mon Sep 17 00:00:00 2001
From: Leila011 <leilapaquay@gmail.com>
Date: Thu, 8 Aug 2024 09:57:50 +0200
Subject: [PATCH] fix run script

---
 src/agat/agat_sp_ensembl_output_style/script.sh | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/src/agat/agat_sp_ensembl_output_style/script.sh b/src/agat/agat_sp_ensembl_output_style/script.sh
index 36e9eea0..525bf90f 100644
--- a/src/agat/agat_sp_ensembl_output_style/script.sh
+++ b/src/agat/agat_sp_ensembl_output_style/script.sh
@@ -6,9 +6,9 @@
 # unset flags
 [[ "$par_verbose" == "false" ]] && unset par_verbose
 
-# run agat_convert_sp_bed2gff.pl
-agat_convert_bed2gff.pl \
-  --gff "$par_bed" \
+# run agat_sp_ensembl_output_style.pl
+agat_sp_ensembl_output_style.pl \
+  --gff "$par_gff" \
   --output "$par_output" \
   ${par_verbose:+-v}
   ${par_config:+--config "${par_config}"} \