diff --git a/src/agat/agat_sp_ensembl_output_style/script.sh b/src/agat/agat_sp_ensembl_output_style/script.sh index 36e9eea0..525bf90f 100644 --- a/src/agat/agat_sp_ensembl_output_style/script.sh +++ b/src/agat/agat_sp_ensembl_output_style/script.sh @@ -6,9 +6,9 @@ # unset flags [[ "$par_verbose" == "false" ]] && unset par_verbose -# run agat_convert_sp_bed2gff.pl -agat_convert_bed2gff.pl \ - --gff "$par_bed" \ +# run agat_sp_ensembl_output_style.pl +agat_sp_ensembl_output_style.pl \ + --gff "$par_gff" \ --output "$par_output" \ ${par_verbose:+-v} ${par_config:+--config "${par_config}"} \