diff --git a/CHANGELOG.md b/CHANGELOG.md index 3e9f40fc..7bfe545d 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -36,6 +36,9 @@ * `rsem/rsem_prepare_reference`: Prepare transcript references for RSEM (PR #89). +* `bcftools`: + - `bcftools_norm`: Left-align and normalize indels, check if REF alleles match the reference, split multiallelic sites into multiple rows; recover multiallelics from multiple rows (PR #144). + ## MINOR CHANGES * `busco` components: update BUSCO to `5.7.1` (PR #72). diff --git a/src/bcftools/bcftools_norm/config.vsh.yaml b/src/bcftools/bcftools_norm/config.vsh.yaml index ecdd94ee..3f9d01de 100644 --- a/src/bcftools/bcftools_norm/config.vsh.yaml +++ b/src/bcftools/bcftools_norm/config.vsh.yaml @@ -34,7 +34,7 @@ argument_groups: alternatives: -o direction: output type: file - description: Output annotated file. + description: Output normalized VCF/BCF file. required: true - name: Options @@ -68,7 +68,7 @@ argument_groups: - name: --fasta_ref alternatives: -f type: file - description: Reference sequence file. + description: Reference fasta sequence file. - name: --force type: boolean_true @@ -160,7 +160,6 @@ argument_groups: description: | Use multithreading with the specified number of worker threads. - resources: - type: bash_script path: script.sh