From 4819514d1a3414dbedcc5f052de830350363e2ec Mon Sep 17 00:00:00 2001 From: Leila011 Date: Mon, 19 Aug 2024 11:04:03 +0200 Subject: [PATCH] convert par_type to comma separated list --- src/agat/agat_sp_filter_feature_from_kill_list/script.sh | 3 +++ 1 file changed, 3 insertions(+) diff --git a/src/agat/agat_sp_filter_feature_from_kill_list/script.sh b/src/agat/agat_sp_filter_feature_from_kill_list/script.sh index 322b0dce..00d6082c 100644 --- a/src/agat/agat_sp_filter_feature_from_kill_list/script.sh +++ b/src/agat/agat_sp_filter_feature_from_kill_list/script.sh @@ -6,6 +6,9 @@ # unset flags [[ "$par_verbose" == "false" ]] && unset par_verbose +# convert par_type to comma separated list +par_type=$(echo $par_type | tr ';' ','). + # run agat_sp_filter_feature_from_kill_list agat_sp_filter_feature_from_kill_list.pl \ --gff "$par_gff" \