diff --git a/src/busco/busco/test.sh b/src/busco/busco/test.sh index 3fd06b97..a12c8c4c 100644 --- a/src/busco/busco/test.sh +++ b/src/busco/busco/test.sh @@ -1,6 +1,6 @@ test_dir="$meta_resources_dir/test_data" -echo "> Running busco" +echo "> Running busco with lineage dataset" "$meta_executable" \ --input $test_dir/protein.fasta \ @@ -20,11 +20,12 @@ echo ">> Checking if output is empty" [ ! -s "output/short_summary.json" ] && echo "short_summary.json is empty" && exit 1 [ ! -s "output/short_summary.txt" ] && echo "short_summary.txt is empty" && exit 1 +echo "> Running busco with auto lineage" "$meta_executable" \ --input $test_dir/protein.fasta \ --mode proteins \ - --auto_lineage \ + --auto_lineage_euk \ --output_dir output echo ">> Checking output"