From 400d84d6b6692363ba3d2b490616fa0fc080b11c Mon Sep 17 00:00:00 2001
From: Leila011 <leilapaquay@gmail.com>
Date: Wed, 7 Aug 2024 17:06:56 +0200
Subject: [PATCH] add test

---
 .../agat_sp_complement_annotations/test.sh    | 48 +++++++++++++++++++
 1 file changed, 48 insertions(+)
 create mode 100644 src/agat/agat_sp_complement_annotations/test.sh

diff --git a/src/agat/agat_sp_complement_annotations/test.sh b/src/agat/agat_sp_complement_annotations/test.sh
new file mode 100644
index 00000000..cf5446f3
--- /dev/null
+++ b/src/agat/agat_sp_complement_annotations/test.sh
@@ -0,0 +1,48 @@
+#!/bin/bash
+
+## VIASH START
+## VIASH END
+
+test_dir="${meta_resources_dir}/test_data"
+out_dir="${meta_resources_dir}/out_data"
+
+echo "> Run $meta_name with test data"
+"$meta_executable" \
+  --ref "$test_dir/25_test.gff" \
+  --add "$test_dir/9_test.gff";"$test_dir/9_test.gff" \
+  --output "$out_dir/output.gff" 
+
+echo ">> Checking output"
+[ ! -f "$out_dir/output.gff" ] && echo "Output file output.gff does not exist" && exit 1
+
+echo ">> Check if output is empty"
+[ ! -s "$out_dir/output.gff" ] && echo "Output file output.gff is empty" && exit 1
+
+echo ">> Check if output matches expected output"
+diff "$out_dir/output.gff" "$test_dir/agat_sp_complement_annotations_1.gff"
+if [ $? -ne 0 ]; then
+  echo "Output file output.gff does not match expected output"
+  exit 1
+fi
+
+rm -rf "$out_dir/output.gff"
+
+echo "> Run $meta_name with test data"
+"$meta_executable" \
+  --ref "$test_dir/agat_sp_complement_annotations_ref.gff" \
+  --add "$test_dir/agat_sp_complement_annotations_add.gff" \
+  --output "$out_dir/output.gff" 
+
+echo ">> Checking output"
+[ ! -f "$out_dir/output.gff" ] && echo "Output file output.gff does not exist" && exit 1
+
+echo ">> Check if output is empty"
+[ ! -s "$out_dir/output.gff" ] && echo "Output file output.gff is empty" && exit 1
+
+echo ">> Check if output matches expected output"
+diff "$out_dir/output.gff" "$test_dir/agat_sp_complement_annotations_2.gff"
+if [ $? -ne 0 ]; then
+  echo "Output file output.gff does not match expected output"
+  exit 1
+fi
+echo "> Test successful"
\ No newline at end of file