From 3dbc8c44293746258d77f0ff543ff98b84dabc84 Mon Sep 17 00:00:00 2001 From: Sai Nirmayi Yasa <92786623+sainirmayi@users.noreply.github.com> Date: Wed, 31 Jan 2024 11:10:57 +0100 Subject: [PATCH] Update src/featurecounts/config.vsh.yaml Co-authored-by: Robrecht Cannoodt --- src/featurecounts/config.vsh.yaml | 3 +++ 1 file changed, 3 insertions(+) diff --git a/src/featurecounts/config.vsh.yaml b/src/featurecounts/config.vsh.yaml index 7f7cc3ef..cc902cb3 100644 --- a/src/featurecounts/config.vsh.yaml +++ b/src/featurecounts/config.vsh.yaml @@ -91,11 +91,14 @@ functionality: Specify attribute type in GTF annotation. 'gene_id' by default. Meta-features used for read counting will be extracted from annotation using the provided value. default: "gene_id" required: false + - name: --extra_attributes type: string description: | Extract extra attribute types from the provided GTF annotation and include them in the counting output. These attribute types will not be used to group features. If more than one attribute type is provided they should be separated by comma. required: false + multiple: true + multiple_sep: "," - name: --chrom_alias alternatives: ["-A"] type: file