diff --git a/src/bcftools/bcftools_norm/config.vsh.yaml b/src/bcftools/bcftools_norm/config.vsh.yaml index 377298f6..5c525d3a 100644 --- a/src/bcftools/bcftools_norm/config.vsh.yaml +++ b/src/bcftools/bcftools_norm/config.vsh.yaml @@ -151,7 +151,7 @@ argument_groups: - name: --targets alternatives: -t type: string - description: Similar to -r but streams rather than index-jumps. + description: Similar to --regions but streams rather than index-jumps. example: '20:1000000-2000000' - name: --targets_file diff --git a/src/bcftools/bcftools_norm/script.sh b/src/bcftools/bcftools_norm/script.sh index eb5263d6..0f43e593 100644 --- a/src/bcftools/bcftools_norm/script.sh +++ b/src/bcftools/bcftools_norm/script.sh @@ -42,7 +42,7 @@ bcftools norm \ ${par_targets:+-t "$par_targets"} \ ${par_targets_file:+-T "$par_targets_file"} \ ${par_targets_overlap:+--targets-overlap "$par_targets_overlap"} \ - ${meta_cpus:+--threads "$meta_cpus"} \\ + ${meta_cpus:+--threads "$meta_cpus"} \ ${par_output_type:+-O "$par_output_type"} \ -o $par_output \ $par_input