From 26cf05bd7801be3e8df18ff25288f4cb35f8870b Mon Sep 17 00:00:00 2001 From: Dorien <41797896+dorien-er@users.noreply.github.com> Date: Tue, 30 Jan 2024 20:39:25 +0100 Subject: [PATCH] Update src/busco/busco/config.vsh.yaml Co-authored-by: Robrecht Cannoodt --- src/busco/busco/config.vsh.yaml | 8 ++++++-- 1 file changed, 6 insertions(+), 2 deletions(-) diff --git a/src/busco/busco/config.vsh.yaml b/src/busco/busco/config.vsh.yaml index 8fadb703..834bc0e5 100644 --- a/src/busco/busco/config.vsh.yaml +++ b/src/busco/busco/config.vsh.yaml @@ -21,10 +21,14 @@ functionality: - name: --mode alternatives: ["-m"] type: string - choices: ["protein", "genome", "transcriptome"] + choices: [genome, geno, transcriptome, tran, proteins, prot] required: true description: | - Busco assesment mode + Specify which BUSCO analysis mode to run. There are three valid modes: + + - geno or genome, for genome assemblies (DNA) + - tran or transcriptome, for transcriptome assemblies (DNA) + - prot or proteins, for annotated gene sets (protein) example: protein - name: --lineage_dataset alternatives: ["-l"]