diff --git a/CHANGELOG.md b/CHANGELOG.md index 0613fa25..a2aa5387 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -9,6 +9,10 @@ * `rsem/rsem_calculate_expression`: Calculate expression levels (PR #93). +## BREAKING CHANGES + +* `falco`: Fix a typo in the `--reverse_complement` argument (PR #157). + ## MINOR CHANGES * Upgrade to Viash 0.9.0. diff --git a/src/falco/config.vsh.yaml b/src/falco/config.vsh.yaml index de9906ef..a161e252 100644 --- a/src/falco/config.vsh.yaml +++ b/src/falco/config.vsh.yaml @@ -86,7 +86,7 @@ argument_groups: bisulfite sequencing, and more Ts and fewer Cs are therefore expected and will be accounted for in base content. - - name: --reverse_complliment + - name: --reverse_complement alternatives: [-r] type: boolean_true description: | diff --git a/src/falco/script.sh b/src/falco/script.sh index 43f5efe5..13e2eab4 100644 --- a/src/falco/script.sh +++ b/src/falco/script.sh @@ -4,7 +4,7 @@ set -eo pipefail [[ "$par_nogroup" == "false" ]] && unset par_nogroup [[ "$par_bisulfite" == "false" ]] && unset par_bisulfite -[[ "$par_reverse_compliment" == "false" ]] && unset par_reverse_compliment +[[ "$par_reverse_complement" == "false" ]] && unset par_reverse_complement IFS=";" read -ra input <<< $par_input @@ -15,7 +15,7 @@ $(which falco) \ ${par_limits:+--limits "$par_limits"} \ ${par_subsample:+-subsample $par_subsample} \ ${par_bisulfite:+-bisulfite} \ - ${par_reverse_compliment:+-reverse-compliment} \ + ${par_reverse_complement:+-reverse-complement} \ ${par_outdir:+--outdir "$par_outdir"} \ ${par_format:+--format "$par_format"} \ ${par_data_filename:+-data-filename "$par_data_filename"} \