diff --git a/src/lofreq/indelqual/test.sh b/src/lofreq/indelqual/test.sh index 662cac11..15213acd 100644 --- a/src/lofreq/indelqual/test.sh +++ b/src/lofreq/indelqual/test.sh @@ -11,10 +11,10 @@ echo "> Run lofreq indelqual uniform" --out "uniform.bam" \ echo ">> Checking output" -[ ! -f "out.bam" ] && echo "Output file out.bam does not exist" && exit 1 +[ ! -f "uniform.bam" ] && echo "Output file uniform.bam does not exist" && exit 1 echo ">> Check if output is empty" -[ ! -s "out.bam" ] && echo "Output file out.bam is empty" && exit 1 +[ ! -s "uniform.bam" ] && echo "Output file uniform.bam is empty" && exit 1 echo "> run lofreq indelqual dindel" "$meta_executable" \