From 1409e8abecfacb7d6da6aca00f7e89c058a44f74 Mon Sep 17 00:00:00 2001
From: Leila011 <leilapaquay@gmail.com>
Date: Wed, 31 Jul 2024 11:34:31 +0200
Subject: [PATCH] add run script

---
 src/agat/agat_sp_add_introns/script.sh | 9 +++++++++
 1 file changed, 9 insertions(+)
 create mode 100644 src/agat/agat_sp_add_introns/script.sh

diff --git a/src/agat/agat_sp_add_introns/script.sh b/src/agat/agat_sp_add_introns/script.sh
new file mode 100644
index 00000000..2e393244
--- /dev/null
+++ b/src/agat/agat_sp_add_introns/script.sh
@@ -0,0 +1,9 @@
+#!/bin/bash
+
+## VIASH START
+## VIASH END
+
+agat_sp_add_introns.pl \
+  -f "$par_gff" \
+  -o "$par_output" \
+  ${par_config:+--config "${par_config}"}