From 11370b4f6253a52ef55e9de6d1b0a0b8f2c11516 Mon Sep 17 00:00:00 2001
From: Leila011 <leilapaquay@gmail.com>
Date: Tue, 30 Jul 2024 10:44:34 +0200
Subject: [PATCH] add test script

---
 src/agat/agat_convert_embl2gff/test.sh | 27 ++++++++++++++++++++++++++
 1 file changed, 27 insertions(+)
 create mode 100644 src/agat/agat_convert_embl2gff/test.sh

diff --git a/src/agat/agat_convert_embl2gff/test.sh b/src/agat/agat_convert_embl2gff/test.sh
new file mode 100644
index 00000000..843c2f14
--- /dev/null
+++ b/src/agat/agat_convert_embl2gff/test.sh
@@ -0,0 +1,27 @@
+#!/bin/bash
+
+## VIASH START
+## VIASH END
+
+test_dir="${meta_resources_dir}/test_data"
+out_dir="${meta_resources_dir}/out_data"
+
+echo "> Run $meta_name with test data"
+"$meta_executable" \
+  --embl "$test_dir/agat_convert_embl2gff_1.embl" \
+  --output "$out_dir/output.gff" 
+
+echo ">> Checking output"
+[ ! -f "output.gff" ] && echo "Output file output.gtf does not exist" && exit 1
+
+echo ">> Check if output is empty"
+[ ! -s "output.gff" ] && echo "Output file output.gtf is empty" && exit 1
+
+echo ">> Check if output matches expected output"
+diff "$out_dir/output.gff" "$test_dir/agat_convert_embl2gff_1.gff"
+if [ $? -ne 0 ]; then
+  echo "Output file output.gff does not match expected output"
+  exit 1
+fi
+
+echo "> Test successful"
\ No newline at end of file