diff --git a/src/featurecounts/test.sh b/src/featurecounts/test.sh index 7b926e60..3deac7f9 100644 --- a/src/featurecounts/test.sh +++ b/src/featurecounts/test.sh @@ -8,7 +8,7 @@ echo "> Run featurCounts" "$meta_executable" \ --input "$dir_in/a.bam" \ --annotation "$dir_in/annotation.gtf" \ - --output "features.txt" \ + --output_counts "features.txt" \ --output_summary "features.txt.summary" \ --output_junctions "features.txt.jcounts" \ --junctions \