diff --git a/src/pear/config.vsh.yaml b/src/pear/config.vsh.yaml index 6bd8fe3c..9566fe2c 100644 --- a/src/pear/config.vsh.yaml +++ b/src/pear/config.vsh.yaml @@ -4,13 +4,15 @@ functionality: PEAR is an ultrafast, memory-efficient and highly accurate pair-end read merger. It is fully parallelized and can run with as low as just a few kilobytes of memory. PEAR evaluates all possible paired-end read overlaps and without requiring the target fragment size as input. In addition, it implements a statistical test for minimizing false-positive results. Together with a highly optimized implementation, it can merge millions of paired end reads within a couple of minutes on a standard desktop computer. + keywords: [ "pair-end", "read", "merge" ] info: - keywords: [ "pair-end", "read", "merge" ] - homepage: https://cme.h-its.org/exelixis/web/software/pear - repository: https://github.com/tseemann/PEAR - documentation: https://cme.h-its.org/exelixis/web/software/pear/doc.html - reference: doi:10.1093/bioinformatics/btt593 - licence: "CC-BY-NC-SA-3.0" + links: + homepage: https://cme.h-its.org/exelixis/web/software/pear + repository: https://github.com/tseemann/PEAR + documentation: https://cme.h-its.org/exelixis/web/software/pear/doc.html + references: + doi: 10.1093/bioinformatics/btt593 + license: "CC-BY-NC-SA-3.0" requirements: commands: [ pear , gzip ] argument_groups: @@ -148,7 +150,7 @@ functionality: path: test.sh - type: file path: test_data -platforms: +engines: - type: docker image: quay.io/biocontainers/pear:0.9.6--h9d449c0_10 setup: @@ -156,4 +158,6 @@ platforms: run: | version=$(pear -h | grep 'PEAR v' | sed 's/PEAR v//' | sed 's/ .*//') && \ echo "pear: $version" > /var/software_versions.txt +runners: + - type: executable - type: nextflow \ No newline at end of file