diff --git a/test.gfa b/test.gfa deleted file mode 100644 index 08a1d98..0000000 --- a/test.gfa +++ /dev/null @@ -1,331 +0,0 @@ -H VN:Z:1.2 -S 0 ATGATAGCATGACTCAGACTG DP:f:2 CB:Z:blue -S 1 CACAGCATGTACGTGTCAGTC DP:f:1 CB:Z:gray -S 2 ATGCATGCATTCGTACATCAC DP:f:2 CB:Z:blue -S 3 AGCATGTACGTGTCAGTCGAT DP:f:1 CB:Z:gray -S 4 ACGTACATGCTGTGATGTACG DP:f:1 CB:Z:gray -S 5 TCAGATCGACTGACTCGTACA DP:f:1 CB:Z:blue -S 6 ATGCATCGATCGATCGAAATG DP:f:2 CB:Z:blue -S 7 CACGTACATGCTGTGATGTAC DP:f:1 CB:Z:gray -S 8 CGATGCATGCATTCGTACATC DP:f:2 CB:Z:blue -S 9 ACGATCAGATCGACTGACTCG DP:f:1 CB:Z:blue -S 10 GATCGACTGACACGTACATGC DP:f:1 CB:Z:gray -S 11 ATGCAGTGATGTACGAATGCA DP:f:1 CB:Z:blue -S 12 ACATGCTGTGATGTACGAATG DP:f:1 CB:Z:gray -S 13 ATCTGATCAGTCTGAGTCATG DP:f:2 CB:Z:blue -S 14 GACTCAGACTGATCAGATCGA DP:f:2 CB:Z:blue -S 15 ATGCATTCGTACATCACTGCA DP:f:1 CB:Z:blue -S 16 CGTACATGCAGTGATGTACGA DP:f:1 CB:Z:blue -S 17 AGTCGATCTGATCGTAGTATG DP:f:2 CB:Z:blue -S 18 CTGCATGTACGAGTCAGTCGA DP:f:1 CB:Z:blue -S 19 AGTCATGCTATCATTTCGATC DP:f:2 CB:Z:blue -S 20 CGATCGATGCATGCATTCGTA DP:f:2 CB:Z:blue -S 21 ATCAGATCGACTGACTCGTAC DP:f:1 CB:Z:blue -S 22 ATCGATCGATGCATGCATTCG DP:f:2 CB:Z:blue -S 23 ATGTACGAGTCAGTCGATCTG DP:f:1 CB:Z:blue -S 24 CAGTGATGTACGAATGCATGC DP:f:1 CB:Z:blue -S 25 GATCGATGCATGCATTCGTAC DP:f:2 CB:Z:blue -S 26 ACTGACTCGTACATGCAGTGA DP:f:1 CB:Z:blue -S 27 ACTACGATCAGATCGACTGAC DP:f:2 CB:Z:blue -S 28 ATGCATGCATCGATCGATCGA DP:f:2 CB:Z:blue -S 29 ACGATCAGATCGACTGACACG DP:f:1 CB:Z:gray -S 30 CGATCGATCGAAATGATAGCA DP:f:2 CB:Z:blue -S 31 GAAATGATAGCATGACTCAGA DP:f:2 CB:Z:blue -S 32 ACGAGTCAGTCGATCTGATCG DP:f:1 CB:Z:blue -S 33 CTACGATCAGATCGACTGACA DP:f:1 CB:Z:gray -S 34 ATGACTCAGACTGATCAGATC DP:f:2 CB:Z:blue -S 35 GTACATGCAGTGATGTACGAA DP:f:1 CB:Z:blue -S 36 CATGCATTCGTACATCACTGC DP:f:1 CB:Z:blue -S 37 GATCAGATCGACTGACACGTA DP:f:1 CB:Z:gray -S 38 TCATGCTATCATTTCGATCGA DP:f:2 CB:Z:blue -S 39 CGATCTGATCAGTCTGAGTCA DP:f:2 CB:Z:blue -S 40 AATGATAGCATGACTCAGACT DP:f:2 CB:Z:blue -S 41 GTACATGCTGTGATGTACGAA DP:f:1 CB:Z:gray -S 42 ATGCATTCGTACATCACAGCA DP:f:1 CB:Z:gray -S 43 ACGAATGCATGCATCGATCGA DP:f:2 CB:Z:blue -S 44 ATCGATCGATCGAAATGATAG DP:f:2 CB:Z:blue -S 45 CAGCATGTACGTGTCAGTCGA DP:f:1 CB:Z:gray -S 46 TAGCATGACTCAGACTGATCA DP:f:2 CB:Z:blue -S 47 ACTCGTACATGCAGTGATGTA DP:f:1 CB:Z:blue -S 48 GCATGCATCGATCGATCGAAA DP:f:2 CB:Z:blue -S 49 ATCGACTGACTCGTACATGCA DP:f:1 CB:Z:blue -S 50 AGTCAGTCGATCTGATCGTAG DP:f:1 CB:Z:blue -S 51 CATGCAGTGATGTACGAATGC DP:f:1 CB:Z:blue -S 52 ACATGCAGTGATGTACGAATG DP:f:1 CB:Z:blue -S 53 GTGTCAGTCGATCTGATCGTA DP:f:1 CB:Z:gray -S 54 CATCACAGCATGTACGTGTCA DP:f:1 CB:Z:gray -S 55 AGCATGACTCAGACTGATCAG DP:f:2 CB:Z:blue -S 56 CGTACATGCTGTGATGTACGA DP:f:1 CB:Z:gray -S 57 ACACGTACATGCTGTGATGTA DP:f:1 CB:Z:gray -S 58 ATTTCGATCGATCGATGCATG DP:f:2 CB:Z:blue -S 59 AGATCGACTGACACGTACATG DP:f:1 CB:Z:gray -S 60 AGTGATGTACGAATGCATGCA DP:f:1 CB:Z:blue -S 61 ATGTACGAATGCATGCATCGA DP:f:2 CB:Z:blue -S 62 CTCGTACATGCAGTGATGTAC DP:f:1 CB:Z:blue -S 63 GAATGCATGCATCGATCGATC DP:f:2 CB:Z:blue -S 64 AGATCGACTGACTCGTACATG DP:f:1 CB:Z:blue -S 65 CATGCATTCGTACATCACAGC DP:f:1 CB:Z:gray -S 66 GATGCATGCATTCGTACATCA DP:f:2 CB:Z:blue -S 67 GATCGACTGACTCGTACATGC DP:f:1 CB:Z:blue -S 68 ATTCGTACATCACTGCATGTA DP:f:1 CB:Z:blue -S 69 AAATGATAGCATGACTCAGAC DP:f:2 CB:Z:blue -S 70 GCTATCATTTCGATCGATCGA DP:f:2 CB:Z:blue -S 71 ATCGATGCATGCATTCGTACA DP:f:2 CB:Z:blue -S 72 ATGCTGTGATGTACGAATGCA DP:f:1 CB:Z:gray -S 73 ATCACTGCATGTACGAGTCAG DP:f:1 CB:Z:blue -S 74 ATCAGATCGACTGACACGTAC DP:f:1 CB:Z:gray -S 75 TCAGATCGACTGACACGTACA DP:f:1 CB:Z:gray -S 76 TCGAAATGATAGCATGACTCA DP:f:2 CB:Z:blue -S 77 ATCGAAATGATAGCATGACTC DP:f:2 CB:Z:blue -S 78 CGAAATGATAGCATGACTCAG DP:f:2 CB:Z:blue -S 79 TACTACGATCAGATCGACTGA DP:f:2 CB:Z:blue -S 80 ACAGCATGTACGTGTCAGTCG DP:f:1 CB:Z:gray -S 81 CATCGATCGATCGAAATGATA DP:f:2 CB:Z:blue -S 82 ACTGCATGTACGAGTCAGTCG DP:f:1 CB:Z:blue -S 83 ATACTACGATCAGATCGACTG DP:f:2 CB:Z:blue -S 84 TCATTTCGATCGATCGATGCA DP:f:2 CB:Z:blue -S 85 ATCGATCGAAATGATAGCATG DP:f:2 CB:Z:blue -S 86 ATCAGTCTGAGTCATGCTATC DP:f:2 CB:Z:blue -S 87 ATAGCATGACTCAGACTGATC DP:f:2 CB:Z:blue -S 88 TGCATGCATTCGTACATCACA DP:f:1 CB:Z:gray -S 89 CGTACATCACTGCATGTACGA DP:f:1 CB:Z:blue -S 90 CACTGCATGTACGAGTCAGTC DP:f:1 CB:Z:blue -S 91 TGCATGCATCGATCGATCGAA DP:f:2 CB:Z:blue -S 92 ACATCACTGCATGTACGAGTC DP:f:1 CB:Z:blue -S 93 ATTCGTACATCACAGCATGTA DP:f:1 CB:Z:gray -S 94 CGATCGAAATGATAGCATGAC DP:f:2 CB:Z:blue -S 95 CATGCTGTGATGTACGAATGC DP:f:1 CB:Z:gray -S 96 ATCATTTCGATCGATCGATGC DP:f:2 CB:Z:blue -S 97 ACTGACACGTACATGCTGTGA DP:f:1 CB:Z:gray -S 98 GCATGACTCAGACTGATCAGA DP:f:2 CB:Z:blue -S 99 GAGTCAGTCGATCTGATCGTA DP:f:1 CB:Z:blue -S 100 ATGTACGTGTCAGTCGATCTG DP:f:1 CB:Z:gray -S 101 TCAGTCTGAGTCATGCTATCA DP:f:2 CB:Z:blue -S 102 ATCACAGCATGTACGTGTCAG DP:f:1 CB:Z:gray -S 103 AATGCATGCATCGATCGATCG DP:f:2 CB:Z:blue -S 104 CTGTGATGTACGAATGCATGC DP:f:1 CB:Z:gray -S 105 CATCACTGCATGTACGAGTCA DP:f:1 CB:Z:blue -S 106 GATCAGATCGACTGACTCGTA DP:f:1 CB:Z:blue -S 107 ATGCTATCATTTCGATCGATC DP:f:2 CB:Z:blue -S 108 ACGTGTCAGTCGATCTGATCG DP:f:1 CB:Z:gray -S 109 ACATCACAGCATGTACGTGTC DP:f:1 CB:Z:gray -L 0 + 101 - 1N20M KC:i:2 -L 40 + 0 + 1N20M KC:i:2 -L 1 + 80 + 1N20M KC:i:1 -L 97 - 1 + 1N20M KC:i:1 -L 2 + 88 + 1N20M KC:i:1 -L 2 + 60 - 1N20M KC:i:1 -L 66 + 2 + 1N20M KC:i:2 -L 3 + 10 - 1N20M KC:i:1 -L 45 + 3 + 1N20M KC:i:1 -L 4 + 56 + 1N20M KC:i:1 -L 7 + 4 + 1N20M KC:i:1 -L 5 + 23 - 1N20M KC:i:1 -L 21 + 5 + 1N20M KC:i:1 -L 6 + 84 - 1N20M KC:i:2 -L 58 - 6 + 1N20M KC:i:2 -L 7 + 4 + 1N20M KC:i:1 -L 57 + 7 + 1N20M KC:i:1 -L 8 + 66 + 1N20M KC:i:2 -L 61 - 8 + 1N20M KC:i:2 -L 9 + 32 - 1N20M KC:i:1 -L 99 - 9 + 1N20M KC:i:1 -L 10 + 3 - 1N20M KC:i:1 -L 59 + 10 + 1N20M KC:i:1 -L 11 + 15 - 1N20M KC:i:1 -L 51 + 11 + 1N20M KC:i:1 -L 12 + 95 + 1N20M KC:i:1 -L 93 - 12 + 1N20M KC:i:1 -L 13 + 98 - 1N20M KC:i:2 -L 34 - 13 + 1N20M KC:i:2 -L 39 - 14 + 1N20M KC:i:2 -L 15 + 11 - 1N20M KC:i:1 -L 36 + 15 + 1N20M KC:i:1 -L 16 + 35 + 1N20M KC:i:1 -L 89 - 16 + 1N20M KC:i:1 -L 83 - 17 + 1N20M KC:i:2 -L 18 + 49 - 1N20M KC:i:1 -L 82 + 18 + 1N20M KC:i:1 -L 19 + 94 - 1N20M KC:i:2 -L 77 - 19 + 1N20M KC:i:2 -L 20 + 25 + 1N20M KC:i:2 -L 43 - 20 + 1N20M KC:i:2 -L 21 + 5 + 1N20M KC:i:1 -L 106 + 21 + 1N20M KC:i:1 -L 22 + 43 - 1N20M KC:i:2 -L 63 - 22 + 1N20M KC:i:2 -L 23 + 5 - 1N20M KC:i:1 -L 64 - 23 + 1N20M KC:i:1 -L 24 + 60 + 1N20M KC:i:1 -L 36 - 24 + 1N20M KC:i:1 -L 25 + 71 + 1N20M KC:i:2 -L 20 + 25 + 1N20M KC:i:2 -L 26 + 73 - 1N20M KC:i:1 -L 90 - 26 + 1N20M KC:i:1 -L 27 + 33 + 1N20M KC:i:1 -L 27 + 50 - 1N20M KC:i:1 -L 79 + 27 + 1N20M KC:i:2 -L 28 + 91 + 1N20M KC:i:2 -L 103 + 28 + 1N20M KC:i:2 -L 29 + 108 - 1N20M KC:i:1 -L 53 - 29 + 1N20M KC:i:1 -L 30 + 107 - 1N20M KC:i:2 -L 70 - 30 + 1N20M KC:i:2 -L 31 + 69 + 1N20M KC:i:2 -L 78 + 31 + 1N20M KC:i:2 -L 32 + 9 - 1N20M KC:i:1 -L 106 - 32 + 1N20M KC:i:1 -L 33 + 53 - 1N20M KC:i:1 -L 27 + 33 + 1N20M KC:i:1 -L 34 + 39 - 1N20M KC:i:2 -L 13 - 34 + 1N20M KC:i:2 -L 35 + 68 - 1N20M KC:i:1 -L 16 + 35 + 1N20M KC:i:1 -L 36 + 15 + 1N20M KC:i:1 -L 24 - 36 + 1N20M KC:i:1 -L 37 + 74 + 1N20M KC:i:1 -L 108 - 37 + 1N20M KC:i:1 -L 38 + 85 - 1N20M KC:i:2 -L 94 - 38 + 1N20M KC:i:2 -L 39 + 34 - 1N20M KC:i:2 -L 14 - 39 + 1N20M KC:i:2 -L 40 + 0 + 1N20M KC:i:2 -L 69 + 40 + 1N20M KC:i:2 -L 41 + 93 - 1N20M KC:i:1 -L 56 + 41 + 1N20M KC:i:1 -L 42 + 72 - 1N20M KC:i:1 -L 65 + 42 + 1N20M KC:i:1 -L 43 + 22 - 1N20M KC:i:2 -L 20 - 43 + 1N20M KC:i:2 -L 44 + 70 - 1N20M KC:i:2 -L 81 + 44 + 1N20M KC:i:2 -L 45 + 3 + 1N20M KC:i:1 -L 80 + 45 + 1N20M KC:i:1 -L 46 + 55 + 1N20M KC:i:2 -L 87 + 46 + 1N20M KC:i:2 -L 47 + 62 + 1N20M KC:i:1 -L 92 - 47 + 1N20M KC:i:1 -L 48 + 58 - 1N20M KC:i:2 -L 91 + 48 + 1N20M KC:i:2 -L 49 + 18 - 1N20M KC:i:1 -L 67 + 49 + 1N20M KC:i:1 -L 50 + 27 - 1N20M KC:i:1 -L 99 + 50 + 1N20M KC:i:1 -L 51 + 11 + 1N20M KC:i:1 -L 52 + 51 + 1N20M KC:i:1 -L 52 + 51 + 1N20M KC:i:1 -L 68 - 52 + 1N20M KC:i:1 -L 53 + 33 - 1N20M KC:i:1 -L 29 - 53 + 1N20M KC:i:1 -L 54 + 102 + 1N20M KC:i:1 -L 109 + 54 + 1N20M KC:i:1 -L 55 + 98 + 1N20M KC:i:2 -L 46 + 55 + 1N20M KC:i:2 -L 56 + 41 + 1N20M KC:i:1 -L 4 + 56 + 1N20M KC:i:1 -L 57 + 7 + 1N20M KC:i:1 -L 109 - 57 + 1N20M KC:i:1 -L 58 + 48 - 1N20M KC:i:2 -L 6 - 58 + 1N20M KC:i:2 -L 59 + 10 + 1N20M KC:i:1 -L 100 - 59 + 1N20M KC:i:1 -L 60 + 2 - 1N20M KC:i:1 -L 24 + 60 + 1N20M KC:i:1 -L 61 + 71 - 1N20M KC:i:2 -L 8 - 61 + 1N20M KC:i:2 -L 62 + 89 - 1N20M KC:i:1 -L 47 + 62 + 1N20M KC:i:1 -L 63 + 103 + 1N20M KC:i:2 -L 22 - 63 + 1N20M KC:i:2 -L 64 + 67 + 1N20M KC:i:1 -L 23 - 64 + 1N20M KC:i:1 -L 65 + 42 + 1N20M KC:i:1 -L 104 - 65 + 1N20M KC:i:1 -L 66 + 2 + 1N20M KC:i:2 -L 8 + 66 + 1N20M KC:i:2 -L 67 + 49 + 1N20M KC:i:1 -L 64 + 67 + 1N20M KC:i:1 -L 68 + 35 - 1N20M KC:i:1 -L 52 - 68 + 1N20M KC:i:1 -L 69 + 40 + 1N20M KC:i:2 -L 31 + 69 + 1N20M KC:i:2 -L 70 + 44 - 1N20M KC:i:2 -L 30 - 70 + 1N20M KC:i:2 -L 71 + 61 - 1N20M KC:i:2 -L 25 + 71 + 1N20M KC:i:2 -L 72 + 42 - 1N20M KC:i:1 -L 95 + 72 + 1N20M KC:i:1 -L 73 + 26 - 1N20M KC:i:1 -L 105 + 73 + 1N20M KC:i:1 -L 74 + 75 + 1N20M KC:i:1 -L 37 + 74 + 1N20M KC:i:1 -L 75 + 100 - 1N20M KC:i:1 -L 74 + 75 + 1N20M KC:i:1 -L 76 + 78 + 1N20M KC:i:2 -L 77 + 76 + 1N20M KC:i:2 -L 77 + 76 + 1N20M KC:i:2 -L 19 - 77 + 1N20M KC:i:2 -L 78 + 31 + 1N20M KC:i:2 -L 76 + 78 + 1N20M KC:i:2 -L 79 + 27 + 1N20M KC:i:2 -L 83 + 79 + 1N20M KC:i:2 -L 80 + 45 + 1N20M KC:i:1 -L 1 + 80 + 1N20M KC:i:1 -L 81 + 44 + 1N20M KC:i:2 -L 96 - 81 + 1N20M KC:i:2 -L 82 + 18 + 1N20M KC:i:1 -L 90 + 82 + 1N20M KC:i:1 -L 83 + 79 + 1N20M KC:i:2 -L 17 - 83 + 1N20M KC:i:2 -L 84 + 6 - 1N20M KC:i:2 -L 96 + 84 + 1N20M KC:i:2 -L 85 + 38 - 1N20M KC:i:2 -L 107 - 85 + 1N20M KC:i:2 -L 86 + 101 + 1N20M KC:i:2 -L 87 - 86 + 1N20M KC:i:2 -L 87 + 46 + 1N20M KC:i:2 -L 86 - 87 + 1N20M KC:i:2 -L 88 + 104 - 1N20M KC:i:1 -L 2 + 88 + 1N20M KC:i:1 -L 89 + 62 - 1N20M KC:i:1 -L 16 - 89 + 1N20M KC:i:1 -L 90 + 82 + 1N20M KC:i:1 -L 26 - 90 + 1N20M KC:i:1 -L 91 + 48 + 1N20M KC:i:2 -L 28 + 91 + 1N20M KC:i:2 -L 92 + 105 + 1N20M KC:i:1 -L 47 - 92 + 1N20M KC:i:1 -L 93 + 41 - 1N20M KC:i:1 -L 12 - 93 + 1N20M KC:i:1 -L 94 + 19 - 1N20M KC:i:2 -L 38 - 94 + 1N20M KC:i:2 -L 95 + 72 + 1N20M KC:i:1 -L 12 + 95 + 1N20M KC:i:1 -L 96 + 84 + 1N20M KC:i:2 -L 81 - 96 + 1N20M KC:i:2 -L 97 + 102 - 1N20M KC:i:1 -L 1 - 97 + 1N20M KC:i:1 -L 98 + 13 - 1N20M KC:i:2 -L 55 + 98 + 1N20M KC:i:2 -L 99 + 50 + 1N20M KC:i:1 -L 9 - 99 + 1N20M KC:i:1 -L 100 + 75 - 1N20M KC:i:1 -L 59 - 100 + 1N20M KC:i:1 -L 101 + 0 - 1N20M KC:i:2 -L 86 + 101 + 1N20M KC:i:2 -L 102 + 97 - 1N20M KC:i:1 -L 54 + 102 + 1N20M KC:i:1 -L 103 + 28 + 1N20M KC:i:2 -L 63 + 103 + 1N20M KC:i:2 -L 104 + 88 - 1N20M KC:i:1 -L 65 - 104 + 1N20M KC:i:1 -L 105 + 73 + 1N20M KC:i:1 -L 92 + 105 + 1N20M KC:i:1 -L 106 + 21 + 1N20M KC:i:1 -L 32 - 106 + 1N20M KC:i:1 -L 107 + 30 - 1N20M KC:i:2 -L 85 - 107 + 1N20M KC:i:2 -L 108 + 29 - 1N20M KC:i:1 -L 37 - 108 + 1N20M KC:i:1 -L 109 + 54 + 1N20M KC:i:1 -L 57 - 109 + 1N20M KC:i:1