From 72605c91d316cb2e69cfb25c1131723eefd6bf5f Mon Sep 17 00:00:00 2001 From: ofedrigo Date: Fri, 22 Oct 2021 10:36:46 -0400 Subject: [PATCH] VGL tracker update --- _data/table_tracker.yml | 8070 +++++++++++++++++++-------------------- 1 file changed, 4035 insertions(+), 4035 deletions(-) diff --git a/_data/table_tracker.yml b/_data/table_tracker.yml index 415911c..dd13c9e 100644 --- a/_data/table_tracker.yml +++ b/_data/table_tracker.yml @@ -1,24 +1,24 @@ -info: Oct 22 2021 08:54:06 +info: Oct 22 2021 10:36:45 toc: -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_011004875.1 - class: Aves,birds - common_name: grey crowned-crane - family: Gruidae - hub: vgl - order: Gruiformes - scientific_name: Balearica regulorum - status: 8-NCBI - taxon_id: '925459' +- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Discoglossus_pictus/aDisPic1/assembly_vgp_standard_1.6/ + class: Amphibia,amphibians + common_name: painted frog + family: Alytidae + hub: others + order: Anura + scientific_name: Discoglossus pictus + status: 5-asm_done + taxon_id: '8351' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Balearica_regulorum/bBalReg1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Discoglossus_pictus/aDisPic1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Balearica_regulorum/bBalReg1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Discoglossus_pictus/aDisPic1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Balearica_regulorum/bBalReg1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Discoglossus_pictus/aDisPic1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -27,29 +27,60 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Balearica_regulorum/bBalReg1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Discoglossus_pictus/aDisPic1/genomic_data/pacbio/ trio: '' - vglId: bBalReg1 + vglId: aDisPic1 vgp_phase: phase1 -- asm: '#' - class: Aves,birds - common_name: speckled mousebird - family: Coliidae - hub: vgl - order: Coliiformes - scientific_name: Colius striatus - status: 2-data_progress - taxon_id: '57412' +- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Bombina_bombina/aBomBom1/assembly_vgp_standard_1.6/ + class: Amphibia,amphibians + common_name: fire-bellied toad + family: Bombinatoridae + hub: others + order: Anura + scientific_name: Bombina bombina + status: 5-asm_done + taxon_id: '8345' techs: 10X: + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Bombina_bombina/aBomBom1/genomic_data/10x/ + BN: + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Bombina_bombina/aBomBom1/genomic_data/bionano/ + HiC: + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Bombina_bombina/aBomBom1/genomic_data/arima/ + Ilm: + status: 4 + url: '#' + ONT: status: 4 url: '#' + PB: + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Bombina_bombina/aBomBom1/genomic_data/pacbio/ + trio: '' + vglId: aBomBom1 + vgp_phase: phase1 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_013368585.1 + class: Actinopterygii,Bony fishes + common_name: Indo-Pacific tarpon + family: Megalopidae + hub: others + order: Elopiformes + scientific_name: Megalops cyprinoides + status: 8-NCBI + taxon_id: '118141' + techs: + 10X: + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Megalops_cyprinoides/fMegCyp1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Colius_striatus/bColStr4/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Megalops_cyprinoides/fMegCyp1/genomic_data/bionano/ HiC: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Megalops_cyprinoides/fMegCyp1/genomic_data/hic/ Ilm: status: 4 url: '#' @@ -57,30 +88,30 @@ toc: status: 4 url: '#' PB: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Megalops_cyprinoides/fMegCyp1/genomic_data/pacbio/ trio: '' - vglId: bColStr4 + vglId: fMegCyp1 vgp_phase: phase1 - asm: '#' - class: Aves,birds - common_name: tawny frogmouth - family: Podargidae + class: Amphibia,amphibians + common_name: wood frog + family: Ranidae hub: vgl - order: Caprimulgiformes - scientific_name: Podargus strigoides - status: 2-data_progress - taxon_id: '8905' + order: Anura + scientific_name: Rana sylvatica + status: 3-data_done + taxon_id: '45438' techs: 10X: status: 4 url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Podargus_strigoides/bPodStr1/genomic_data/bionano/ - HiC: - status: 2 url: '#' + HiC: + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rana_sylvatica/aRanSyl1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -88,20 +119,20 @@ toc: status: 4 url: '#' PB: - status: 0 + status: 1 url: '#' trio: '' - vglId: bPodStr1 - vgp_phase: phase1 + vglId: aRanSyl1 + vgp_phase: phase4 - asm: '#' - class: Mammalia,mammals - common_name: pig-tailed macaque - family: Cercopithecidae + class: Aves,birds + common_name: American robin + family: Turdidae hub: vgl - order: Primates - scientific_name: Macaca nemestrina + order: Passeriformes + scientific_name: Turdus migratorius status: 0-data_queued - taxon_id: '9545' + taxon_id: '9188' techs: 10X: status: 4 @@ -121,27 +152,27 @@ toc: PB: status: 0 url: '#' - vglId: mMacNem1 + vglId: bTurMig1 vgp_phase: phase2 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_008692025.1 - class: Mammalia,mammals - common_name: vaquita - family: Phocoenidae +- asm: '#' + class: Aves,birds + common_name: Brown-headed cowbird + family: Icteridae hub: vgl - order: Artiodactyla - scientific_name: Phocoena sinus - status: 8-NCBI - taxon_id: '42100' + order: Passeriformes + scientific_name: Molothrus ater + status: 0-data_queued + taxon_id: '84834' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Phocoena_sinus/mPhoSin1/genomic_data/10x/ + status: 4 + url: '#' BN: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Phocoena_sinus/mPhoSin1/genomic_data/bionano/ + status: 0 + url: '#' HiC: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Phocoena_sinus/mPhoSin1/genomic_data/arima/ + status: 0 + url: '#' Ilm: status: 4 url: '#' @@ -149,61 +180,60 @@ toc: status: 4 url: '#' PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Phocoena_sinus/mPhoSin1/genomic_data/pacbio/ - trio: '' - vglId: mPhoSin1 - vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_017639515.1 - class: Chondrichthyes,cartilaginous fishes - common_name: great white shark - family: Alopiidae - hub: vgl - order: Lamniformes - scientific_name: Carcharodon carcharias + status: 0 + url: '#' + vglId: bMolAte1 + vgp_phase: phase2 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_014108235.1 + class: Mammalia,mammals + common_name: '' + family: Vespertilionidae + hub: others + order: Chiroptera + scientific_name: Myotis myotis status: 8-NCBI - taxon_id: '13397' + taxon_id: '51298' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Carcharodon_carcharias/sCarCar2/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Myotis_myotis/mMyoMyo1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Carcharodon_carcharias/sCarCar2/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Myotis_myotis/mMyoMyo1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Carcharodon_carcharias/sCarCar2/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Myotis_myotis/mMyoMyo1/genomic_data/phase/ Ilm: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Carcharodon_carcharias/sCarCar2/genomic_data/illumina/ + status: 4 + url: '#' ONT: status: 4 url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Carcharodon_carcharias/sCarCar2/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Myotis_myotis/mMyoMyo1/genomic_data/pacbio/ trio: '' - vglId: sCarCar2 - vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_009769535.1 - class: Reptilia,reptiles - common_name: Western terrestrial garter snake - family: Colubridae + vglId: mMyoMyo1 + vgp_phase: phase2 +- asm: '#' + class: Aves,birds + common_name: seaside sparrow + family: Passerellidae hub: vgl - order: Squamata - scientific_name: Thamnophis elegans - status: 8-NCBI - taxon_id: '35005' + order: Passeriformes + scientific_name: Ammodramus maritimus + status: 2-data_progress + taxon_id: '371905' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Thamnophis_elegans/rThaEle1/genomic_data/10x/ + status: 4 + url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Thamnophis_elegans/rThaEle1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Ammodramus_maritimus/bAmmMai1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Thamnophis_elegans/rThaEle1/genomic_data/dovetail/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Ammodramus_maritimus/bAmmMai1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -211,61 +241,93 @@ toc: status: 4 url: '#' PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Thamnophis_elegans/rThaEle1/genomic_data/pacbio/ + status: 2 + url: '#' trio: '' - vglId: rThaEle1 - vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_910596095.1 + vglId: bAmmMai1 + vgp_phase: phase2 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_011004845.1 class: Actinopterygii,Bony fishes - common_name: southern bluefin tuna - family: Scombridae + common_name: northern pike + family: Esocidae hub: others - order: Scombriformes - scientific_name: Thunnus maccoyii + order: Esociformes + scientific_name: Esox lucius status: 8-NCBI - taxon_id: '8240' + taxon_id: '8010' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Thunnus_maccoyii/fThuMac1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Esox_lucius/fEsoLuc1/genomic_data/10x/ BN: status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Esox_lucius/fEsoLuc1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Thunnus_maccoyii/fThuMac1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Esox_lucius/fEsoLuc1/genomic_data/arima/ Ilm: - status: 1 + status: 4 url: '#' ONT: - status: 1 + status: 4 url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Thunnus_maccoyii/fThuMac1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Esox_lucius/fEsoLuc1/genomic_data/pacbio/ trio: '' - vglId: fThuMac1 - vgp_phase: phase3 + vglId: fEsoLuc1 + vgp_phase: phase1 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_017976375.1 + class: Aves,birds + common_name: common cuckoo + family: Cuculidae + hub: vgl + order: Cuculiformes + scientific_name: Cuculus canorus + status: 8-NCBI + taxon_id: '55661' + techs: + 10X: + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cuculus_canorus/bCucCan1/genomic_data/10x/ + BN: + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cuculus_canorus/bCucCan1/genomic_data/bionano/ + HiC: + link: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cuculus_canorus/bCucCan2/genomic_data/arima/ + status: 1 + url: '#' + Ilm: + status: 4 + url: '#' + ONT: + status: 4 + url: '#' + PB: + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cuculus_canorus/bCucCan1/genomic_data/pacbio/ + trio: '' + vglId: bCucCan1 + vgp_phase: phase1 - asm: '#' - class: Amphibia,amphibians - common_name: wood frog - family: Ranidae + class: Actinopterygii,Bony fishes + common_name: delta smelt + family: Osmeridae hub: vgl - order: Anura - scientific_name: Rana sylvatica - status: 3-data_done - taxon_id: '45438' + order: Osmeriformes + scientific_name: Hypomesus transpacificus + status: 4-asm_progress + taxon_id: '137520' techs: 10X: status: 4 url: '#' BN: status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Hypomesus_transpacificus/fHypTra1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rana_sylvatica/aRanSyl1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Hypomesus_transpacificus/fHypTra1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -276,27 +338,27 @@ toc: status: 1 url: '#' trio: '' - vglId: aRanSyl1 - vgp_phase: phase4 + vglId: fHypTra1 + vgp_phase: phase3 - asm: '#' - class: Actinopterygii,Bony fishes - common_name: stoplight loosejaw - family: Stomiidae + class: Mammalia,mammals + common_name: Eurasian badger + family: Mustelidae hub: others - order: Stomiiformes - scientific_name: Malacosteus niger + order: Carnivora + scientific_name: Meles meles status: 2-data_progress - taxon_id: '76143' + taxon_id: '9662' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Malacosteus_niger/fMalNig1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Meles_meles/mMelMel3/genomic_data/10x/ BN: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Meles_meles/mMelMel3/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Malacosteus_niger/fMalNig1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Meles_meles/mMelMel3/genomic_data/arima/ Ilm: status: 0 url: '#' @@ -305,29 +367,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Malacosteus_niger/fMalNig1/genomic_data/pacbio/ - trio: '' - vglId: fMalNig1 - vgp_phase: phase2 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_011100635.1 - class: Mammalia,mammals - common_name: common brushtail - family: Phalangeridae - hub: vgl - order: Diprotodontia - scientific_name: Trichosurus vulpecula + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Meles_meles/mMelMel3/genomic_data/pacbio/ + trio: mMelMel1/mMelMel2 + vglId: mMelMel3 + vgp_phase: phase3 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_014839685.1 + class: Actinopteri,Bony fishes + common_name: largescale foureyes + family: Anablepidae + hub: others + order: Cyprinodontiformes + scientific_name: Anableps anableps status: 8-NCBI - taxon_id: '9337' + taxon_id: '195821' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Trichosurus_vulpecula/mTriVul1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Anableps_anableps/fAnaAna1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Trichosurus_vulpecula/mTriVul1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Anableps_anableps/fAnaAna1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Trichosurus_vulpecula/mTriVul1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Anableps_anableps/fAnaAna1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -336,29 +398,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Trichosurus_vulpecula/mTriVul1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Anableps_anableps/fAnaAna1/genomic_data/pacbio/ trio: '' - vglId: mTriVul1 + vglId: fAnaAna1 vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_017639675.1 - class: Actinopterygii,Bony fishes - common_name: '' - family: Galaxiidae - hub: others - order: Galaxiiformes - scientific_name: Aplochiton taeniatus +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_009764565.3 + class: Reptilia,reptiles + common_name: leatherback sea turtle + family: Dermochelyidae + hub: vgl + order: Testudines + scientific_name: Dermochelys coriacea status: 8-NCBI - taxon_id: '946358' + taxon_id: '27794' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Aplochiton_taeniatus/fAplTae1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dermochelys_coriacea/rDerCor1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Aplochiton_taeniatus/fAplTae1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dermochelys_coriacea/rDerCor1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Aplochiton_taeniatus/fAplTae1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dermochelys_coriacea/rDerCor1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -367,29 +429,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Aplochiton_taeniatus/fAplTae1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dermochelys_coriacea/rDerCor1/genomic_data/pacbio/ trio: '' - vglId: fAplTae1 + vglId: rDerCor1 vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_013368585.1 - class: Actinopterygii,Bony fishes - common_name: Indo-Pacific tarpon - family: Megalopidae - hub: others - order: Elopiformes - scientific_name: Megalops cyprinoides - status: 8-NCBI - taxon_id: '118141' +- asm: '#' + class: Reptilia,reptiles + common_name: Aeolian wall lizard + family: Lacertidae + hub: vgl + order: Squamata + scientific_name: Podarcis raffonei + status: 4-asm_progress + taxon_id: '65483' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Megalops_cyprinoides/fMegCyp1/genomic_data/10x/ + status: 4 + url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Megalops_cyprinoides/fMegCyp1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Podarcis_raffonei/rPodRaf1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Megalops_cyprinoides/fMegCyp1/genomic_data/hic/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Podarcis_raffonei/rPodRaf1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -398,28 +460,28 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Megalops_cyprinoides/fMegCyp1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Podarcis_raffonei/rPodRaf1/genomic_data/pacbio/ trio: '' - vglId: fMegCyp1 - vgp_phase: phase1 + vglId: rPodRaf1 + vgp_phase: phase3 - asm: '#' - class: Amphibia,amphibians - common_name: rufous frog - family: Leptodactylidae + class: Mammalia,mammals + common_name: false killer whale + family: Delphinidae hub: vgl - order: Anura - scientific_name: Leptodactylus fuscus + order: Artiodactyla + scientific_name: Pseudorca crassidens status: 2-data_progress - taxon_id: '238119' + taxon_id: '82174' techs: 10X: status: 4 url: '#' BN: status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pseudorca_crassidens/mPseCra1/genomic_data/bionano/ HiC: - status: 2 + status: 0 url: '#' Ilm: status: 4 @@ -428,29 +490,30 @@ toc: status: 4 url: '#' PB: - status: 0 - url: '#' - vglId: aLepFus1 + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pseudorca_crassidens/mPseCra1/genomic_data/pacbio/ + trio: '' + vglId: mPseCra1 vgp_phase: phase2 - asm: '#' - class: Amphibia,amphibians - common_name: rocket frog - family: Dendrobatidae + class: Actinopterygii,Bony fishes + common_name: longfin smelt + family: Osmeridae hub: vgl - order: Anura - scientific_name: Anomaloglossus baeobatrachus + order: Osmeriformes + scientific_name: Spirinchus thaleichthys status: 2-data_progress - taxon_id: '238106' + taxon_id: '260508' techs: 10X: status: 4 url: '#' BN: - status: 1 - url: '#' - HiC: status: 0 url: '#' + HiC: + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Spirinchus_thaleichthys/fSpiTha1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -458,29 +521,30 @@ toc: status: 4 url: '#' PB: - status: 0 + status: 2 url: '#' - vglId: aAnoBae1 - vgp_phase: phase2 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_902686445.2 + trio: '' + vglId: fSpiTha1 + vgp_phase: phase3 +- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pan_troglodytes/mPanTro1/assembly_vgp_standard_1.6/ class: Mammalia,mammals - common_name: gray squirrel - family: Sciuridae + common_name: chimpanzee + family: Hominidae hub: others - order: Rodentia - scientific_name: Sciurus carolinensis - status: 8-NCBI - taxon_id: '30640' + order: Primates + scientific_name: Pan troglodytes + status: 5-asm_done + taxon_id: '9598' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sciurus_carolinensis/mSciCar1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pan_troglodytes/mPanTro1/genomic_data/10x/ BN: + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pan_troglodytes/mPanTro1/genomic_data/bionano/ + HiC: status: 4 url: '#' - HiC: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sciurus_carolinensis/mSciCar1/genomic_data/dovetail/ Ilm: status: 4 url: '#' @@ -489,29 +553,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sciurus_carolinensis/mSciCar1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pan_troglodytes/mPanTro1/genomic_data/pacbio/ trio: '' - vglId: mSciCar1 - vgp_phase: phase4 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_019393635.1 - class: Mammalia,mammals - common_name: monito del monte - family: Microbiotheriidae - hub: others - order: Microbiotheria - scientific_name: Dromiciops gliroides - status: 8-NCBI - taxon_id: '33562' - techs: - 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dromiciops_gliroides/mDroGli1/genomic_data/10x/ - BN: + vglId: mPanTro1 + vgp_phase: phase3 +- asm: '#' + class: Reptilia,reptiles + common_name: snub-nosed viper + family: Viperidae + hub: vgl + order: Squamata + scientific_name: Vipera latastei + status: 6-asm_curation + taxon_id: '246179' + techs: + 10X: + status: 4 + url: '#' + BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dromiciops_gliroides/mDroGli1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Vipera_latastei/rVipLat1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dromiciops_gliroides/mDroGli1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Vipera_latastei/rVipLat1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -520,29 +584,28 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dromiciops_gliroides/mDroGli1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Vipera_latastei/rVipLat1/genomic_data/pacbio/ trio: '' - vglId: mDroGli1 + vglId: rVipLat1 vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_903992545.1 - class: Mammalia,mammals - common_name: common pipistrelle - family: Vespertilionidae - hub: others - order: Chiroptera - scientific_name: Pipistrellus pipistrellus - status: 8-NCBI - taxon_id: '59474' +- asm: '#' + class: Actinopterygii,Bony fishes + common_name: trahira + family: Erythrinidae + hub: vgl + order: Characiformes + scientific_name: Hoplias malabaricus + status: 2-data_progress + taxon_id: '27720' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pipistrellus_pipistrellus/mPipPip1/genomic_data/10x/ - BN: status: 4 url: '#' + BN: + status: 2 + url: '#' HiC: - link: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pipistrellus_pipistrellus/mPipPip2/genomic_data/arima/ - status: 1 + status: 0 url: '#' Ilm: status: 4 @@ -551,30 +614,29 @@ toc: status: 4 url: '#' PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pipistrellus_pipistrellus/mPipPip1/genomic_data/pacbio/ - trio: '' - vglId: mPipPip1 + status: 0 + url: '#' + vglId: fHopMal1 vgp_phase: phase2 -- asm: '#' +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_011762595.1 class: Mammalia,mammals - common_name: pygmy sperm whale - family: Physeteridae + common_name: common bottlenose dolphin + family: Delphinidae hub: vgl order: Artiodactyla - scientific_name: Kogia breviceps - status: 3-data_done - taxon_id: '27615' + scientific_name: Tursiops truncatus + status: 8-NCBI + taxon_id: '9739' techs: 10X: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Tursiops_truncatus/mTurTru1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Kogia_breviceps/mKogBre1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Tursiops_truncatus/mTurTru1/genomic_data/bionano/ HiC: status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Tursiops_truncatus/mTurTru1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -583,29 +645,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Kogia_breviceps/mKogBre1/genomic_data/pacbio/ - trio: '' - vglId: mKogBre1 - vgp_phase: phase2 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_907165065.1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Tursiops_truncatus/mTurTru1/genomic_data/pacbio/ + trio: mTurTru2/mTurTru3 + vglId: mTurTru1 + vgp_phase: phase3 +- asm: '#' class: Aves,birds - common_name: Eurasian nightjar - family: Caprimulgidae - hub: others - order: Caprimulgiformes - scientific_name: Caprimulgus europaeus - status: 8-NCBI - taxon_id: '111811' + common_name: Nelson's sparrow + family: Passerellidae + hub: vgl + order: Passeriformes + scientific_name: Ammospiza nelsoni + status: 2-data_progress + taxon_id: '2857394' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Caprimulgus_europaeus/bCapEur3/genomic_data/10x/ + status: 4 + url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Caprimulgus_europaeus/bCapEur3/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Ammospiza_nelsoni/bAmmNel1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Caprimulgus_europaeus/bCapEur3/genomic_data/arima/ + url: '#' Ilm: status: 4 url: '#' @@ -613,60 +675,60 @@ toc: status: 4 url: '#' PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Caprimulgus_europaeus/bCapEur3/genomic_data/pacbio/ + status: 2 + url: '#' trio: '' - vglId: bCapEur3 - vgp_phase: phase1 -- asm: '#' - class: Mammalia,mammals - common_name: Eurasian badger - family: Mustelidae - hub: others - order: Carnivora - scientific_name: Meles meles - status: 2-data_progress - taxon_id: '9662' + vglId: bAmmNel1 + vgp_phase: phase3 +- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Hemiscyllium_ocellatum/sHemOce1/assembly_curated/ + class: Chondrichthyes,cartilaginous fishes + common_name: epaulette shark + family: Hemiscylliidae + hub: vgl + order: Orectolobiformes + scientific_name: Hemiscyllium ocellatum + status: 7-asm_curated + taxon_id: '170820' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Meles_meles/mMelMel3/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Hemiscyllium_ocellatum/sHemOce1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Meles_meles/mMelMel3/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Hemiscyllium_ocellatum/sHemOce1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Meles_meles/mMelMel3/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Hemiscyllium_ocellatum/sHemOce1/genomic_data/arima/ Ilm: - status: 0 + status: 4 url: '#' ONT: - status: 0 + status: 4 url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Meles_meles/mMelMel3/genomic_data/pacbio/ - trio: mMelMel1/mMelMel2 - vglId: mMelMel3 - vgp_phase: phase3 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Hemiscyllium_ocellatum/sHemOce1/genomic_data/pacbio/ + trio: '' + vglId: sHemOce1 + vgp_phase: phase1 - asm: '#' - class: Amphibia,amphibians - common_name: plains spadefoot toad - family: Pelobatidae + class: Mammalia,mammals + common_name: Chinese pangolin + family: Manidae hub: vgl - order: Anura - scientific_name: Spea bombifrons + order: Pholidota + scientific_name: Manis pentadactyla status: 2-data_progress - taxon_id: '233779' + taxon_id: '143292' techs: 10X: status: 4 url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Spea_bombifrons/aSpeBom1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Manis_pentadactyla/mManPen7/genomic_data/bionano/ HiC: - status: 1 + status: 0 url: '#' Ilm: status: 4 @@ -675,26 +737,26 @@ toc: status: 4 url: '#' PB: - status: 0 + status: 2 url: '#' trio: '' - vglId: aSpeBom1 + vglId: mManPen7 vgp_phase: phase1 - asm: '#' - class: Reptilia,reptiles - common_name: diamondback terrapin - family: Emydidae + class: Amphibia,amphibians + common_name: eastern narrow-mouthed toad + family: Microhylidae hub: vgl - order: Testudines - scientific_name: Malaclemys terrapin + order: Anura + scientific_name: Gastrophryne carolinensis status: 2-data_progress - taxon_id: '8485' + taxon_id: '8429' techs: 10X: status: 4 url: '#' BN: - status: 1 + status: 3 url: '#' HiC: status: 0 @@ -706,29 +768,29 @@ toc: status: 4 url: '#' PB: - status: 0 + status: 2 url: '#' - vglId: rMalTer1 + vglId: aGasCar1 vgp_phase: phase1 -- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Theristicus_caerulescens/bTheCae1/assembly_curated/ +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_009819795.1 class: Aves,birds - common_name: plumbeous ibis - family: Threskiornithidae + common_name: tufted duck + family: Anatidae hub: vgl - order: Pelecaniformes - scientific_name: Theristicus caerulescens - status: 7-asm_curated - taxon_id: '1118847' + order: Anseriformes + scientific_name: Aythya fuligula + status: 8-NCBI + taxon_id: '219594' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Theristicus_caerulescens/bTheCae1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Aythya_fuligula/bAytFul2/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Theristicus_caerulescens/bTheCae1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Aythya_fuligula/bAytFul2/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Theristicus_caerulescens/bTheCae1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Aythya_fuligula/bAytFul2/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -737,29 +799,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Theristicus_caerulescens/bTheCae1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Aythya_fuligula/bAytFul2/genomic_data/pacbio/ trio: '' - vglId: bTheCae1 + vglId: bAytFul2 vgp_phase: phase1 -- asm: '#' - class: Aves,birds - common_name: Seychelles magpie-robin - family: Muscicapidae +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_004115215.2 + class: Mammalia,mammals + common_name: platypus + family: Ornithorhynchidae hub: vgl - order: Passeriformes - scientific_name: Copsychus sechellarum - status: 2-data_progress - taxon_id: '797021' + order: Monotremata + scientific_name: Ornithorhynchus anatinus + status: 8-NCBI + taxon_id: '9258' techs: 10X: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Ornithorhynchus_anatinus/mOrnAna1/genomic_data/10x/ BN: - status: 2 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Ornithorhynchus_anatinus/mOrnAna1/genomic_data/bionano/ HiC: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Ornithorhynchus_anatinus/mOrnAna1/genomic_data/phase/ Ilm: status: 4 url: '#' @@ -767,29 +829,30 @@ toc: status: 4 url: '#' PB: - status: 0 - url: '#' - vglId: bCopSec1 - vgp_phase: phase2 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_902150065.1 - class: Actinopterygii,Bony fishes - common_name: pinecone soldierfish - family: Holocentridae - hub: others - order: Holocentriformes - scientific_name: Myripristis murdjan - status: 8-NCBI - taxon_id: '586833' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Ornithorhynchus_anatinus/mOrnAna1/genomic_data/pacbio/ + trio: '' + vglId: mOrnAna1 + vgp_phase: phase1 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_009769625.2 + class: Aves,birds + common_name: mute swan + family: Anatidae + hub: vgl + order: Anseriformes + scientific_name: Cygnus olor + status: 8-NCBI + taxon_id: '8869' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Myripristis_murdjan/fMyrMur1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cygnus_olor/bCygOlo1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Myripristis_murdjan/fMyrMur1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cygnus_olor/bCygOlo1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Myripristis_murdjan/fMyrMur1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cygnus_olor/bCygOlo1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -798,60 +861,60 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Myripristis_murdjan/fMyrMur1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cygnus_olor/bCygOlo1/genomic_data/pacbio/ trio: '' - vglId: fMyrMur1 - vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_902459505.2 + vglId: bCygOlo1 + vgp_phase: phase3 +- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dendropsophus_ebraccatus/aDenEbr1/assembly_nhgri_trio_1.6/ class: Amphibia,amphibians - common_name: Gabon caecilian - family: Dermophiidae - hub: others - order: Gymnophiona - scientific_name: Geotrypetes seraphini - status: 8-NCBI - taxon_id: '260995' + common_name: hourglass treefrog + family: Hylidae + hub: vgl + order: Anura + scientific_name: Dendropsophus ebraccatus + status: 6-asm_curation + taxon_id: '150705' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Geotrypetes_seraphini/aGeoSer1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dendropsophus_ebraccatus/aDenEbr1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Geotrypetes_seraphini/aGeoSer1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dendropsophus_ebraccatus/aDenEbr1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Geotrypetes_seraphini/aGeoSer1/genomic_data/dovetail/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dendropsophus_ebraccatus/aDenEbr1/genomic_data/arima/ Ilm: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dendropsophus_ebraccatus/aDenEbr1/genomic_data/illumina/ ONT: status: 4 url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Geotrypetes_seraphini/aGeoSer1/genomic_data/pacbio/ - trio: '' - vglId: aGeoSer1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dendropsophus_ebraccatus/aDenEbr1/genomic_data/pacbio/ + trio: aDenEbr4/aDenEbr5 + vglId: aDenEbr1 vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_010993605.1 - class: Hyperoartia,jawless,Agnatha - common_name: sea lamprey - family: Petromyzontidae +- asm: '#' + class: Chondrichthyes,cartilaginous fishes + common_name: bramble shark + family: Echinorhinidae hub: vgl - order: Petromyzontiformes - scientific_name: Petromyzon marinus - status: 8-NCBI - taxon_id: '7757' + order: Echinorhiniformes + scientific_name: Echinorhinus brucus + status: 0-data_queued + taxon_id: '862826' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Petromyzon_marinus/kPetMar1/genomic_data/10x/ + status: 4 + url: '#' BN: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Petromyzon_marinus/kPetMar1/genomic_data/bionano/ + status: 0 + url: '#' HiC: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Petromyzon_marinus/kPetMar1/genomic_data/arima/ + status: 0 + url: '#' Ilm: status: 4 url: '#' @@ -859,31 +922,29 @@ toc: status: 4 url: '#' PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Petromyzon_marinus/kPetMar1/genomic_data/pacbio/ - trio: '' - vglId: kPetMar1 + status: 0 + url: '#' + vglId: sEchBru1 vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_016904835.1 - class: Aves,birds - common_name: rifleman - family: Acanthisittidae - hub: vgl - order: Passeriformes - scientific_name: Acanthisitta chloris +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_017976425.1 + class: Enteropneusta,Bony fishes + common_name: banded archerfish + family: Toxotidae + hub: others + order: '' + scientific_name: Toxotes jaculatrix status: 8-NCBI - taxon_id: '57068' + taxon_id: '941984' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Acanthisitta_chloris/bAcaChl1/genomic_data/10x/ + status: 4 + url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Acanthisitta_chloris/bAcaChl1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Toxotes_jaculatrix/fToxJac2/genomic_data/bionano/ HiC: - link: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Acanthisitta_chloris/bAcaChl4/genomic_data/arima/ status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Toxotes_jaculatrix/fToxJac2/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -892,29 +953,59 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Acanthisitta_chloris/bAcaChl1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Toxotes_jaculatrix/fToxJac2/genomic_data/pacbio/ trio: '' - vglId: bAcaChl1 + vglId: fToxJac2 vgp_phase: phase1 - asm: '#' - class: Actinopterygii,Bony fishes - common_name: delta smelt - family: Osmeridae + class: Mammalia,mammals + common_name: chimpanzee + family: Hominidae hub: vgl - order: Osmeriformes - scientific_name: Hypomesus transpacificus - status: 4-asm_progress - taxon_id: '137520' + order: Primates + scientific_name: Pan troglodytes + status: 0-data_queued + taxon_id: '9598' + techs: + 10X: + status: 4 + url: '#' + BN: + status: 0 + url: '#' + HiC: + status: 0 + url: '#' + Ilm: + status: 4 + url: '#' + ONT: + status: 4 + url: '#' + PB: + status: 0 + url: '#' + vglId: mPanTro2 + vgp_phase: phase4 +- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dendrocygna_viduata/bDenVid1/assembly_vgp_standard_1.5/ + class: Aves,birds + common_name: white-faced whistling-duck + family: Anatidae + hub: vgl + order: Anseriformes + scientific_name: Dendrocygna viduata + status: 5-asm_done + taxon_id: '8876' techs: 10X: status: 4 url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Hypomesus_transpacificus/fHypTra1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dendrocygna_viduata/bDenVid1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Hypomesus_transpacificus/fHypTra1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dendrocygna_viduata/bDenVid1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -923,60 +1014,60 @@ toc: url: '#' PB: status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dendrocygna_viduata/bDenVid1/genomic_data/pacbio/ trio: '' - vglId: fHypTra1 + vglId: bDenVid1 vgp_phase: phase3 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_015220745.1 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_902713425.1 class: Actinopterygii,Bony fishes - common_name: honeycomb rockfish - family: Sebastidae - hub: vgl - order: Perciformes - scientific_name: Sebastes umbrosus + common_name: sterlet + family: Acipenseridae + hub: others + order: Acipenseriformes + scientific_name: Acipenser ruthenus status: 8-NCBI - taxon_id: '72105' + taxon_id: '7906' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sebastes_umbrosus/fSebUmb1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Acipenser_ruthenus/fAciRut3/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sebastes_umbrosus/fSebUmb1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Acipenser_ruthenus/fAciRut3/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sebastes_umbrosus/fSebUmb1/genomic_data/hic/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Acipenser_ruthenus/fAciRut3/genomic_data/dovetail/ Ilm: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sebastes_umbrosus/fSebUmb1/genomic_data/illumina/ + status: 4 + url: '#' ONT: status: 4 url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sebastes_umbrosus/fSebUmb1/genomic_data/pacbio/ - trio: '' - vglId: fSebUmb1 - vgp_phase: phase2 -- asm: '#' - class: Aves,birds - common_name: blue-and-yellow macaw - family: Psittacidae - hub: vgl - order: Psittaciformes - scientific_name: Ara ararauna - status: 2-data_progress - taxon_id: '9226' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Acipenser_ruthenus/fAciRut3/genomic_data/pacbio/ + trio: fAciRut1/fAciRut2 + vglId: fAciRut3 + vgp_phase: phase1 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_902148845.1 + class: Actinopterygii,Bony fishes + common_name: jewelled blenny + family: Blenniidae + hub: others + order: Blenniiformes + scientific_name: Salarias fasciatus + status: 8-NCBI + taxon_id: '181472' techs: 10X: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Salarias_fasciatus/fSalaFa1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Ara_ararauna/bAraAra1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Salarias_fasciatus/fSalaFa1/genomic_data/bionano/ HiC: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Salarias_fasciatus/fSalaFa1/genomic_data/dovetail/ Ilm: status: 4 url: '#' @@ -984,30 +1075,30 @@ toc: status: 4 url: '#' PB: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Salarias_fasciatus/fSalaFa1/genomic_data/pacbio/ trio: '' - vglId: bAraAra1 - vgp_phase: phase3 + vglId: fSalaFa1 + vgp_phase: phase1 - asm: '#' - class: Aves,birds - common_name: Micronesian kingfisher - family: Alcedinidae + class: Chondrichthyes,cartilaginous fishes + common_name: Yucatan manta ray + family: Mobulidae hub: vgl - order: Coraciiformes - scientific_name: Todiramphus cinnamominus + order: Myliobatiformes + scientific_name: Manta giorna status: 2-data_progress - taxon_id: '1006542' + taxon_id: '000000' techs: 10X: status: 4 url: '#' BN: - status: 2 + status: 1 url: '#' HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Todiramphus_cinnamominus/bTodCin1/genomic_data/arima/ + url: '#' Ilm: status: 4 url: '#' @@ -1015,30 +1106,29 @@ toc: status: 4 url: '#' PB: - status: 0 + status: 2 url: '#' - trio: '' - vglId: bTodCin1 + vglId: sManGio1 vgp_phase: phase2 -- asm: '#' - class: Aves,birds - common_name: chicken - family: Phasianidae - hub: vgl - order: Galliformes - scientific_name: Gallus gallus - status: 7-asm_curated - taxon_id: '9031' +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_905171765.1 + class: Amphibia,amphibians + common_name: common toad + family: Bufonidae + hub: others + order: Anura + scientific_name: Bufo bufo + status: 8-NCBI + taxon_id: '8384' techs: 10X: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Bufo_bufo/aBufBuf1/genomic_data/10x/ BN: status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Bufo_bufo/aBufBuf1/genomic_data/bionano/ HiC: status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Bufo_bufo/aBufBuf1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -1047,58 +1137,61 @@ toc: url: '#' PB: status: 1 - url: '#' - vglId: bGalGal4 - vgp_phase: other -- asm: '#' - class: Reptilia,reptiles - common_name: eastern musk turtle - family: Kinosternidae + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Bufo_bufo/aBufBuf1/genomic_data/pacbio/ + trio: '' + vglId: aBufBuf1 + vgp_phase: phase1 +- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Vidua_chalybeata/bVidCha1/assembly_vgp_standard_1.5/ + class: Aves,birds + common_name: village indigobird + family: Estrildidae hub: vgl - order: Testudines - scientific_name: Sternotherus odoratus - status: 2-data_progress - taxon_id: '142480' + order: Passeriformes + scientific_name: Vidua chalybeata + status: 5-asm_done + taxon_id: '81927' techs: 10X: status: 4 url: '#' BN: - status: 1 + status: 4 url: '#' HiC: - status: 0 + link: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Vidua_chalybeata/bVidCha2/genomic_data/arima/ + status: 1 url: '#' Ilm: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Vidua_chalybeata/bVidCha1/genomic_data/illumina/ ONT: status: 4 url: '#' PB: - status: 0 - url: '#' - vglId: rSteOdo1 - vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_902686455.2 - class: Mammalia,mammals - common_name: Eurasian red squirrel - family: Sciuridae - hub: vgl - order: Rodentia - scientific_name: Sciurus vulgaris + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Vidua_chalybeata/bVidCha1/genomic_data/pacbio/ + trio: '' + vglId: bVidCha1 + vgp_phase: phase3 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_015220715.1 + class: Actinopterygii,Bony fishes + common_name: red-bellied piranha + family: Serrasalmidae + hub: others + order: Characiformes + scientific_name: Pygocentrus nattereri status: 8-NCBI - taxon_id: '55149' + taxon_id: '42514' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sciurus_vulgaris/mSciVul1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pygocentrus_nattereri/fPygNat1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sciurus_vulgaris/mSciVul1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pygocentrus_nattereri/fPygNat1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sciurus_vulgaris/mSciVul1/genomic_data/baylor-hic/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pygocentrus_nattereri/fPygNat1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -1107,29 +1200,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sciurus_vulgaris/mSciVul1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pygocentrus_nattereri/fPygNat1/genomic_data/pacbio/ trio: '' - vglId: mSciVul1 + vglId: fPygNat1 vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_902713425.1 - class: Actinopterygii,Bony fishes - common_name: sterlet - family: Acipenseridae - hub: others - order: Acipenseriformes - scientific_name: Acipenser ruthenus +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_009769605.1 + class: Aves,birds + common_name: Abyssinian ground-hornbill + family: Bucorvidae + hub: vgl + order: Bucerotiformes + scientific_name: Bucorvus abyssinicus status: 8-NCBI - taxon_id: '7906' + taxon_id: '153643' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Acipenser_ruthenus/fAciRut3/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Bucorvus_abyssinicus/bBucAby1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Acipenser_ruthenus/fAciRut3/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Bucorvus_abyssinicus/bBucAby1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Acipenser_ruthenus/fAciRut3/genomic_data/dovetail/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Bucorvus_abyssinicus/bBucAby1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -1138,29 +1231,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Acipenser_ruthenus/fAciRut3/genomic_data/pacbio/ - trio: fAciRut1/fAciRut2 - vglId: fAciRut3 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Bucorvus_abyssinicus/bBucAby1/genomic_data/pacbio/ + trio: '' + vglId: bBucAby1 vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_014839685.1 - class: Actinopteri,Bony fishes - common_name: largescale foureyes - family: Anablepidae - hub: others - order: Cyprinodontiformes - scientific_name: Anableps anableps +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_018492685.1 + class: Actinopterygii,Bony fishes + common_name: American shad + family: Clupeidae + hub: vgl + order: Clupeiformes + scientific_name: Alosa sapidissima status: 8-NCBI - taxon_id: '195821' + taxon_id: '34773' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Anableps_anableps/fAnaAna1/genomic_data/10x/ + status: 4 + url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Anableps_anableps/fAnaAna1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Alosa_sapidissima/fAloSap1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Anableps_anableps/fAnaAna1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Alosa_sapidissima/fAloSap1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -1169,60 +1262,60 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Anableps_anableps/fAnaAna1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Alosa_sapidissima/fAloSap1/genomic_data/pacbio/ trio: '' - vglId: fAnaAna1 - vgp_phase: phase1 -- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Bombina_bombina/aBomBom1/assembly_vgp_standard_1.6/ - class: Amphibia,amphibians - common_name: fire-bellied toad - family: Bombinatoridae - hub: others - order: Anura - scientific_name: Bombina bombina - status: 5-asm_done - taxon_id: '8345' + vglId: fAloSap1 + vgp_phase: phase2 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_010909765.2 + class: Chondrichthyes,cartilaginous fishes + common_name: thorny skate + family: Rajidae + hub: vgl + order: Rajiformes + scientific_name: Amblyraja radiata + status: 8-NCBI + taxon_id: '386614' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Bombina_bombina/aBomBom1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Amblyraja_radiata/sAmbRad1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Bombina_bombina/aBomBom1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Amblyraja_radiata/sAmbRad1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Bombina_bombina/aBomBom1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Amblyraja_radiata/sAmbRad1/genomic_data/arima/ Ilm: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Amblyraja_radiata/sAmbRad1/genomic_data/illumina/ ONT: status: 4 url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Bombina_bombina/aBomBom1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Amblyraja_radiata/sAmbRad1/genomic_data/pacbio/ trio: '' - vglId: aBomBom1 + vglId: sAmbRad1 vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_012275275.1 +- asm: '#' class: Aves,birds - common_name: budgerigar - family: Psittaculidae + common_name: Savannah sparrow + family: Passerellidae hub: vgl - order: Psittaciformes - scientific_name: Melopsittacus undulatus - status: 8-NCBI - taxon_id: '13146' + order: Passeriformes + scientific_name: Passerculus sandwichensis + status: 2-data_progress + taxon_id: '161624' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Melopsittacus_undulatus/bMelUnd1/genomic_data/10x/ + status: 4 + url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Melopsittacus_undulatus/bMelUnd1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Passerculus_sandwichensis/bPasSan1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Melopsittacus_undulatus/bMelUnd1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Passerculus_sandwichensis/bPasSan1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -1230,30 +1323,30 @@ toc: status: 4 url: '#' PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Melopsittacus_undulatus/bMelUnd1/genomic_data/pacbio/ - trio: bMelUnd2/bMelUnd3 - vglId: bMelUnd1 - vgp_phase: phase2 -- asm: '#' - class: Mammalia,mammals - common_name: Bolivian squirrel monkey - family: Cebidae - hub: vgl - order: Primates - scientific_name: Saimiri boliviensis - status: 2-data_progress - taxon_id: '27679' + status: 2 + url: '#' + trio: '' + vglId: bPasSan1 + vgp_phase: phase3 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_901709675.1 + class: Actinopterygii,Bony fishes + common_name: greater pipefish + family: Syngnathidae + hub: others + order: Syngnathiformes + scientific_name: Syngnathus acus + status: 8-NCBI + taxon_id: '161584' techs: 10X: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Syngnathus_acus/fSynAcu1/genomic_data/10x/ BN: - status: 2 + status: 4 url: '#' HiC: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Syngnathus_acus/fSynAcu1/genomic_data/dovetail/ Ilm: status: 4 url: '#' @@ -1261,28 +1354,29 @@ toc: status: 4 url: '#' PB: - status: 0 - url: '#' - vglId: mSaiBol1 - vgp_phase: phase3 -- asm: '#' - class: ',arthropods' - common_name: snow crab - family: Majidae + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Syngnathus_acus/fSynAcu1/genomic_data/pacbio/ + trio: '' + vglId: fSynAcu1 + vgp_phase: phase1 +- asm: '#' + class: Aves,birds + common_name: American goldfinch + family: Fringillidae hub: vgl - order: Decapoda - scientific_name: Chionoecetes opilio - status: 2-data_progress - taxon_id: '41210' + order: Passeriformes + scientific_name: Spinus tristis + status: 1-DNA_isolation + taxon_id: '54773' techs: 10X: status: 4 url: '#' BN: - status: 3 + status: 0 url: '#' HiC: - status: 1 + status: 0 url: '#' Ilm: status: 4 @@ -1291,29 +1385,29 @@ toc: status: 4 url: '#' PB: - status: 2 + status: 0 url: '#' - vglId: qChiOpi2 + vglId: bSpiTri1 vgp_phase: phase2 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_014108235.1 - class: Mammalia,mammals - common_name: '' - family: Vespertilionidae - hub: others - order: Chiroptera - scientific_name: Myotis myotis +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_016699485.2 + class: Aves,birds + common_name: chicken + family: Phasianidae + hub: vgl + order: Galliformes + scientific_name: Gallus gallus status: 8-NCBI - taxon_id: '51298' + taxon_id: '9031' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Myotis_myotis/mMyoMyo1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Gallus_gallus/bGalGal1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Myotis_myotis/mMyoMyo1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Gallus_gallus/bGalGal1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Myotis_myotis/mMyoMyo1/genomic_data/phase/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Gallus_gallus/bGalGal1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -1322,26 +1416,26 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Myotis_myotis/mMyoMyo1/genomic_data/pacbio/ - trio: '' - vglId: mMyoMyo1 - vgp_phase: phase3 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Gallus_gallus/bGalGal1/genomic_data/pacbio/ + trio: bGalGal2/bGalGal3 + vglId: bGalGal1 + vgp_phase: phase1 - asm: '#' class: Aves,birds - common_name: great cormorant - family: Phalacrocoracidae + common_name: speckled mousebird + family: Coliidae hub: vgl - order: Pelecaniformes - scientific_name: Phalacrocorax carbo + order: Coliiformes + scientific_name: Colius striatus status: 2-data_progress - taxon_id: '9209' + taxon_id: '57412' techs: 10X: status: 4 url: '#' BN: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Colius_striatus/bColStr4/genomic_data/bionano/ HiC: status: 0 url: '#' @@ -1354,26 +1448,27 @@ toc: PB: status: 0 url: '#' - vglId: bPhaCar1 + trio: '' + vglId: bColStr4 vgp_phase: phase1 - asm: '#' - class: Mammalia,mammals - common_name: Asiatic elephant - family: Elephantidae + class: Reptilia,reptiles + common_name: American alligator + family: Alligatoridae hub: vgl - order: Proboscidea - scientific_name: Elephas maximus + order: Crocodylia + scientific_name: Alligator mississippiensis status: 2-data_progress - taxon_id: '9783' + taxon_id: '8496' techs: 10X: status: 4 url: '#' BN: status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Alligator_mississippiensis/rAllMis1/genomic_data/bionano/ HiC: - status: 2 + status: 0 url: '#' Ilm: status: 4 @@ -1382,29 +1477,30 @@ toc: status: 4 url: '#' PB: - status: 2 + status: 0 url: '#' - vglId: mEleMax1 + trio: '' + vglId: rAllMis1 vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_004115215.2 - class: Mammalia,mammals - common_name: platypus - family: Ornithorhynchidae +- asm: '#' + class: Amphibia,amphibians + common_name: rocket frog + family: Dendrobatidae hub: vgl - order: Monotremata - scientific_name: Ornithorhynchus anatinus - status: 8-NCBI - taxon_id: '9258' + order: Anura + scientific_name: Anomaloglossus baeobatrachus + status: 2-data_progress + taxon_id: '238106' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Ornithorhynchus_anatinus/mOrnAna1/genomic_data/10x/ + status: 4 + url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Ornithorhynchus_anatinus/mOrnAna1/genomic_data/bionano/ + url: '#' HiC: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Ornithorhynchus_anatinus/mOrnAna1/genomic_data/phase/ + status: 0 + url: '#' Ilm: status: 4 url: '#' @@ -1412,29 +1508,28 @@ toc: status: 4 url: '#' PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Ornithorhynchus_anatinus/mOrnAna1/genomic_data/pacbio/ - trio: '' - vglId: mOrnAna1 - vgp_phase: phase1 -- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Turdus_merula/bTurMer1/assembly_v0/ - class: Aves,birds - common_name: blackbird - family: Turdidae + status: 0 + url: '#' + vglId: aAnoBae1 + vgp_phase: phase2 +- asm: '#' + class: Mammalia,mammals + common_name: springhare + family: Pedetidae hub: vgl - order: Passeriformes - scientific_name: Turdus merula - status: 5-asm_done - taxon_id: '9187' + order: Rodentia + scientific_name: Pedetes capensis + status: 0-data_queued + taxon_id: '10023' techs: 10X: status: 4 url: '#' BN: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Turdus_merula/bTurMer1/genomic_data/bionano/ + status: 0 + url: '#' HiC: - status: 4 + status: 0 url: '#' Ilm: status: 4 @@ -1443,30 +1538,29 @@ toc: status: 4 url: '#' PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Turdus_merula/bTurMer1/genomic_data/pacbio/ - trio: '' - vglId: bTurMer1 - vgp_phase: phase2 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_009819825.1 - class: Aves,birds - common_name: Red-legged seriema - family: Cariamidae - hub: vgl - order: Cariamiformes - scientific_name: Cariama cristata + status: 0 + url: '#' + vglId: mPedCap1 + vgp_phase: phase1 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_902686445.2 + class: Mammalia,mammals + common_name: gray squirrel + family: Sciuridae + hub: others + order: Rodentia + scientific_name: Sciurus carolinensis status: 8-NCBI - taxon_id: '54380' + taxon_id: '30640' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cariama_cristata/bCarCri1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sciurus_carolinensis/mSciCar1/genomic_data/10x/ BN: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cariama_cristata/bCarCri1/genomic_data/bionano/ + status: 4 + url: '#' HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cariama_cristata/bCarCri1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sciurus_carolinensis/mSciCar1/genomic_data/dovetail/ Ilm: status: 4 url: '#' @@ -1475,60 +1569,60 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cariama_cristata/bCarCri1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sciurus_carolinensis/mSciCar1/genomic_data/pacbio/ trio: '' - vglId: bCarCri1 - vgp_phase: phase1 + vglId: mSciCar1 + vgp_phase: phase4 - asm: '#' - class: Actinopterygii,Bony fishes - common_name: shanny - family: Blenniidae - hub: others - order: Blenniiformes - scientific_name: Lipophrys pholis + class: Amphibia,amphibians + common_name: corroboree frog + family: Myobatrachidae + hub: vgl + order: Anura + scientific_name: Pseudophryne corroboree status: 2-data_progress - taxon_id: '56720' + taxon_id: '495146' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lipophrys_pholis/fLipPho2/genomic_data/10x/ + status: 4 + url: '#' BN: - status: 0 + status: 1 url: '#' HiC: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lipophrys_pholis/fLipPho2/genomic_data/arima/ - Ilm: status: 0 url: '#' + Ilm: + status: 4 + url: '#' ONT: - status: 0 + status: 4 url: '#' PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lipophrys_pholis/fLipPho2/genomic_data/pacbio/ - trio: '' - vglId: fLipPho2 - vgp_phase: phase3 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_013368605.1 - class: Aves,birds - common_name: great potoo - family: Nyctibiidae - hub: vgl - order: Caprimulgiformes - scientific_name: Nyctibius grandis + status: 2 + url: '#' + vglId: aPseCor3 + vgp_phase: phase1 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_900634415.1 + class: Actinopterygii,Bony fishes + common_name: channel bull blenny + family: Bovichtidae + hub: others + order: Perciformes + scientific_name: Cottoperca gobio status: 8-NCBI - taxon_id: '48427' + taxon_id: '56716' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Nyctibius_grandis/bNycGra1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cottoperca_gobio/fCotGob3/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Nyctibius_grandis/bNycGra1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cottoperca_gobio/fCotGob3/genomic_data/bionano/ HiC: + link: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cottoperca_gobio/fCotGob2/genomic_data/arima/ status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Nyctibius_grandis/bNycGra1/genomic_data/arima/ + url: '#' Ilm: status: 4 url: '#' @@ -1537,50 +1631,19 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Nyctibius_grandis/bNycGra1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cottoperca_gobio/fCotGob3/genomic_data/pacbio/ trio: '' - vglId: bNycGra1 + vglId: fCotGob3 vgp_phase: phase1 -- asm: '#' - class: Mammalia,mammals - common_name: European shrew - family: Soricidae - hub: vgl - order: Eulipotyphla - scientific_name: Sorex araneus - status: 3-data_done - taxon_id: '42254' - techs: - 10X: - status: 4 - url: '#' - BN: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sorex_araneus/mSorAra1/genomic_data/bionano/ - HiC: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sorex_araneus/mSorAra1/genomic_data/arima/ - Ilm: - status: 4 - url: '#' - ONT: - status: 4 - url: '#' - PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sorex_araneus/mSorAra1/genomic_data/pacbio/ - trio: '' - vglId: mSorAra1 - vgp_phase: phase3 - asm: '#' class: Aves,birds - common_name: Black-capped chickadee - family: Paridae + common_name: blue jay + family: Corvidae hub: vgl order: Passeriformes - scientific_name: Poecile atricapillus - status: 1-DNA_isolation - taxon_id: '48891' + scientific_name: Cyanocitta cristata + status: 0-data_queued + taxon_id: '28727' techs: 10X: status: 4 @@ -1600,28 +1663,27 @@ toc: PB: status: 0 url: '#' - vglId: bPoeAtr1 + vglId: bCyaCri1 vgp_phase: phase2 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_017976375.1 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_009819885.2 class: Aves,birds - common_name: common cuckoo - family: Cuculidae + common_name: Swainson's thrush + family: Turdidae hub: vgl - order: Cuculiformes - scientific_name: Cuculus canorus + order: Passeriformes + scientific_name: Catharus ustulatus status: 8-NCBI - taxon_id: '55661' + taxon_id: '91951' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cuculus_canorus/bCucCan1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Catharus_ustulatus/bCatUst1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cuculus_canorus/bCucCan1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Catharus_ustulatus/bCatUst1/genomic_data/bionano/ HiC: - link: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cuculus_canorus/bCucCan2/genomic_data/arima/ status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Catharus_ustulatus/bCatUst1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -1630,29 +1692,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cuculus_canorus/bCucCan1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Catharus_ustulatus/bCatUst1/genomic_data/pacbio/ trio: '' - vglId: bCucCan1 - vgp_phase: phase1 + vglId: bCatUst1 + vgp_phase: phase3 - asm: '#' - class: Mammalia,mammals - common_name: Chinese pangolin - family: Manidae + class: Actinopteri,Bony fishes + common_name: banded killifish + family: Fundulidae hub: vgl - order: Pholidota - scientific_name: Manis pentadactyla + order: Cyprinodontiformes + scientific_name: Fundulus diaphanus status: 2-data_progress - taxon_id: '143292' + taxon_id: '54267' techs: 10X: status: 4 url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Manis_pentadactyla/mManPen7/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Fundulus_diaphanus/fFunDia1/genomic_data/bionano/ HiC: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Fundulus_diaphanus/fFunDia1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -1660,30 +1722,30 @@ toc: status: 4 url: '#' PB: - status: 2 + status: 0 url: '#' trio: '' - vglId: mManPen7 - vgp_phase: phase1 + vglId: fFunDia1 + vgp_phase: phase2 - asm: '#' - class: Chondrichthyes,cartilaginous fishes - common_name: zebra shark - family: Stegostomatidae + class: Mammalia,mammals + common_name: Clouded leopard + family: Felidae hub: vgl - order: Orectolobiformes - scientific_name: Stegostoma tigrinum - status: 0-data_queued - taxon_id: '000000' + order: Carnivora + scientific_name: Neofelis nebulosa + status: 2-data_progress + taxon_id: '61452' techs: 10X: status: 4 url: '#' BN: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Neofelis_nebulosa/mNeoNeb1/genomic_data/bionano/ HiC: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Neofelis_nebulosa/mNeoNeb1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -1691,29 +1753,30 @@ toc: status: 4 url: '#' PB: - status: 0 + status: 2 url: '#' - vglId: sSteTig2 - vgp_phase: phase2 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_017639745.1 - class: Actinopterygii,Bony fishes - common_name: Boeseman's rainbowfish - family: Melanotaeniidae - hub: others - order: Atheriniformes - scientific_name: Melanotaenia boesemani - status: 8-NCBI - taxon_id: '1250792' + trio: '' + vglId: mNeoNeb1 + vgp_phase: phase3 +- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rhinolophus_sinicus/mRhiSin1/assembly_curated/ + class: Mammalia,mammals + common_name: Chinese rufous horseshoe bat + family: Rhinolophidae + hub: vgl + order: Chiroptera + scientific_name: Rhinolophus sinicus + status: 7-asm_curated + taxon_id: '89399' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Melanotaenia_boesemani/fMelBoe1/genomic_data/10x/ + status: 4 + url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Melanotaenia_boesemani/fMelBoe1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rhinolophus_sinicus/mRhiSin1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Melanotaenia_boesemani/fMelBoe1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rhinolophus_sinicus/mRhiSin1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -1722,29 +1785,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Melanotaenia_boesemani/fMelBoe1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rhinolophus_sinicus/mRhiSin1/genomic_data/pacbio/ trio: '' - vglId: fMelBoe1 - vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_017976325.1 - class: Actinopterygii,Bony fishes - common_name: copperband butterflyfish - family: Chaetodontidae - hub: others - order: Chaetodontiformes - scientific_name: Chelmon rostratus - status: 8-NCBI - taxon_id: '109905' + vglId: mRhiSin1 + vgp_phase: phase4 +- asm: '#' + class: Mammalia,mammals + common_name: Asiatic elephant + family: Elephantidae + hub: vgl + order: Proboscidea + scientific_name: Elephas maximus + status: 2-data_progress + taxon_id: '9783' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Chelmon_rostratus/fCheRos1/genomic_data/10x/ + status: 4 + url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Chelmon_rostratus/fCheRos1/genomic_data/bionano/ + url: '#' HiC: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Chelmon_rostratus/fCheRos1/genomic_data/hic/ + status: 2 + url: '#' Ilm: status: 4 url: '#' @@ -1752,30 +1815,29 @@ toc: status: 4 url: '#' PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Chelmon_rostratus/fCheRos1/genomic_data/pacbio/ - trio: '' - vglId: fCheRos1 + status: 2 + url: '#' + vglId: mEleMax1 vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_017639485.1 - class: Aves,birds - common_name: European golden plover - family: Charadriidae +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_902686455.2 + class: Mammalia,mammals + common_name: Eurasian red squirrel + family: Sciuridae hub: vgl - order: Charadriiformes - scientific_name: Pluvialis apricaria + order: Rodentia + scientific_name: Sciurus vulgaris status: 8-NCBI - taxon_id: '670352' + taxon_id: '55149' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pluvialis_apricaria/bPluApr1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sciurus_vulgaris/mSciVul1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pluvialis_apricaria/bPluApr1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sciurus_vulgaris/mSciVul1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pluvialis_apricaria/bPluApr1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sciurus_vulgaris/mSciVul1/genomic_data/baylor-hic/ Ilm: status: 4 url: '#' @@ -1784,29 +1846,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pluvialis_apricaria/bPluApr1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sciurus_vulgaris/mSciVul1/genomic_data/pacbio/ trio: '' - vglId: bPluApr1 + vglId: mSciVul1 vgp_phase: phase1 -- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dendrocygna_viduata/bDenVid1/assembly_vgp_standard_1.5/ - class: Aves,birds - common_name: white-faced whistling-duck - family: Anatidae +- asm: '#' + class: Actinopterygii,Bony fishes + common_name: red shiner + family: Leuciscidae hub: vgl - order: Anseriformes - scientific_name: Dendrocygna viduata - status: 5-asm_done - taxon_id: '8876' + order: Cypriniformes + scientific_name: Cyprinella lutrensis + status: 0-data_queued + taxon_id: '28791' techs: 10X: status: 4 url: '#' BN: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dendrocygna_viduata/bDenVid1/genomic_data/bionano/ + status: 0 + url: '#' HiC: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dendrocygna_viduata/bDenVid1/genomic_data/arima/ + status: 0 + url: '#' Ilm: status: 4 url: '#' @@ -1814,30 +1876,29 @@ toc: status: 4 url: '#' PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dendrocygna_viduata/bDenVid1/genomic_data/pacbio/ - trio: '' - vglId: bDenVid1 - vgp_phase: phase3 -- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Gopherus_flavomarginatus/rGopFla2/assembly_nhgri_trio_1.6/ - class: Reptilia,reptiles - common_name: Mexican gopher tortoise - family: Testudinidae + status: 0 + url: '#' + vglId: fCypLut1 + vgp_phase: phase2 +- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Turdus_merula/bTurMer1/assembly_v0/ + class: Aves,birds + common_name: blackbird + family: Turdidae hub: vgl - order: Testudines - scientific_name: Gopherus flavomarginatus - status: 6-asm_curation - taxon_id: '286002' + order: Passeriformes + scientific_name: Turdus merula + status: 5-asm_done + taxon_id: '9187' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Gopherus_flavomarginatus/rGopFla2/genomic_data/10x/ + status: 4 + url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Gopherus_flavomarginatus/rGopFla2/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Turdus_merula/bTurMer1/genomic_data/bionano/ HiC: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Gopherus_flavomarginatus/rGopFla2/genomic_data/arima/ + status: 4 + url: '#' Ilm: status: 4 url: '#' @@ -1846,29 +1907,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Gopherus_flavomarginatus/rGopFla2/genomic_data/pacbio/ - trio: rGopFla1/rGopFla3 - vglId: rGopFla2 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Turdus_merula/bTurMer1/genomic_data/pacbio/ + trio: '' + vglId: bTurMer1 vgp_phase: phase4 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_015220805.1 - class: Aves,birds - common_name: Red-fronted tinkerbird - family: Lybiidae +- asm: '#' + class: Reptilia,reptiles + common_name: European pond turtle + family: Emydidae hub: vgl - order: Piciformes - scientific_name: Pogoniulus pusillus - status: 8-NCBI - taxon_id: '488313' + order: Testudines + scientific_name: Emys orbicularis + status: 3-data_done + taxon_id: '82168' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pogoniulus_pusillus/bPogPus1/genomic_data/10x/ + status: 4 + url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pogoniulus_pusillus/bPogPus1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Emys_orbicularis/rEmyOrb1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pogoniulus_pusillus/bPogPus1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Emys_orbicularis/rEmyOrb1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -1877,29 +1938,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pogoniulus_pusillus/bPogPus1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Emys_orbicularis/rEmyOrb1/genomic_data/pacbio/ trio: '' - vglId: bPogPus1 - vgp_phase: phase2 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_900963305.2 - class: Actinopterygii,Bony fishes - common_name: live sharksucker - family: Echeneidae - hub: others - order: Carangiformes - scientific_name: Echeneis naucrates + vglId: rEmyOrb1 + vgp_phase: phase3 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_012275275.1 + class: Aves,birds + common_name: budgerigar + family: Psittaculidae + hub: vgl + order: Psittaciformes + scientific_name: Melopsittacus undulatus status: 8-NCBI - taxon_id: '173247' + taxon_id: '13146' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Echeneis_naucrates/fEcheNa1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Melopsittacus_undulatus/bMelUnd1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Echeneis_naucrates/fEcheNa1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Melopsittacus_undulatus/bMelUnd1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Echeneis_naucrates/fEcheNa1/genomic_data/dovetail/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Melopsittacus_undulatus/bMelUnd1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -1908,90 +1969,60 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Echeneis_naucrates/fEcheNa1/genomic_data/pacbio/ - trio: '' - vglId: fEcheNa1 - vgp_phase: phase1 -- asm: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Melopsittacus_undulatus/bMelUnd1/genomic_data/pacbio/ + trio: bMelUnd2/bMelUnd3 + vglId: bMelUnd1 + vgp_phase: phase2 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_905319845.1 class: Mammalia,mammals - common_name: springhare - family: Pedetidae - hub: vgl - order: Rodentia - scientific_name: Pedetes capensis - status: 0-data_queued - taxon_id: '10023' - techs: - 10X: - status: 4 - url: '#' - BN: - status: 0 - url: '#' - HiC: - status: 0 - url: '#' - Ilm: - status: 4 - url: '#' - ONT: - status: 4 - url: '#' - PB: - status: 0 - url: '#' - vglId: mPedCap1 - vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_902459465.1 - class: Asteroidea,echinoderms - common_name: European starfish - family: Asteriidae + common_name: Greenland wolf + family: Canidae hub: others - order: Forcipulatida - scientific_name: Asterias rubens + order: Carnivora + scientific_name: Canis lupus orion status: 8-NCBI - taxon_id: '7604' + taxon_id: '2605939' techs: 10X: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Canis_lupus_orion/mCanLor1/genomic_data/10x/ BN: status: 4 url: '#' HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Asterias_rubens/eAstRub1/genomic_data/dovetail/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Canis_lupus_orion/mCanLor1/genomic_data/dovetail/ Ilm: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Asterias_rubens/eAstRub1/genomic_data/illumina/ + status: 4 + url: '#' ONT: status: 4 url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Asterias_rubens/eAstRub1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Canis_lupus_orion/mCanLor1/genomic_data/pacbio/ trio: '' - vglId: eAstRub1 - vgp_phase: phase1 -- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Porphyrio_hochstetteri/bPorHoc1/assembly_curated/ - class: Aves,birds - common_name: South Island takahe - family: Rallidae + vglId: mCanLor1 + vgp_phase: phase2 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_010993605.1 + class: Hyperoartia,jawless,Agnatha + common_name: sea lamprey + family: Petromyzontidae hub: vgl - order: Gruiformes - scientific_name: Porphyrio hochstetteri - status: 7-asm_curated - taxon_id: '439704' + order: Petromyzontiformes + scientific_name: Petromyzon marinus + status: 8-NCBI + taxon_id: '7757' techs: 10X: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Petromyzon_marinus/kPetMar1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Porphyrio_hochstetteri/bPorHoc1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Petromyzon_marinus/kPetMar1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Porphyrio_hochstetteri/bPorHoc1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Petromyzon_marinus/kPetMar1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -2000,29 +2031,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Porphyrio_hochstetteri/bPorHoc1/genomic_data/pacbio/ - trio: bPorHoc2/bPorHoc3 - vglId: bPorHoc1 - vgp_phase: phase2 -- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rhinolophus_sinicus/mRhiSin1/assembly_curated/ - class: Mammalia,mammals - common_name: Chinese rufous horseshoe bat - family: Rhinolophidae + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Petromyzon_marinus/kPetMar1/genomic_data/pacbio/ + trio: '' + vglId: kPetMar1 + vgp_phase: phase1 +- asm: '#' + class: Aves,birds + common_name: Common starling + family: Sturnidae hub: vgl - order: Chiroptera - scientific_name: Rhinolophus sinicus - status: 7-asm_curated - taxon_id: '89399' + order: Passeriformes + scientific_name: Sturnus vulgaris + status: 1-DNA_isolation + taxon_id: '9172' techs: 10X: status: 4 url: '#' BN: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rhinolophus_sinicus/mRhiSin1/genomic_data/bionano/ + status: 0 + url: '#' HiC: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rhinolophus_sinicus/mRhiSin1/genomic_data/arima/ + status: 0 + url: '#' Ilm: status: 4 url: '#' @@ -2030,26 +2061,25 @@ toc: status: 4 url: '#' PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rhinolophus_sinicus/mRhiSin1/genomic_data/pacbio/ - trio: '' - vglId: mRhiSin1 - vgp_phase: phase4 + status: 0 + url: '#' + vglId: bStuVul1 + vgp_phase: phase2 - asm: '#' - class: Actinopterygii,Bony fishes - common_name: trahira - family: Erythrinidae + class: Mammalia,mammals + common_name: Philippine flying lemur + family: Cynocephalidae hub: vgl - order: Characiformes - scientific_name: Hoplias malabaricus - status: 2-data_progress - taxon_id: '27720' + order: Dermoptera + scientific_name: Cynocephalus volans + status: 1-DNA_isolation + taxon_id: '110931' techs: 10X: status: 4 url: '#' BN: - status: 2 + status: 0 url: '#' HiC: status: 0 @@ -2063,27 +2093,28 @@ toc: PB: status: 0 url: '#' - vglId: fHopMal1 - vgp_phase: phase2 -- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Discoglossus_pictus/aDisPic1/assembly_vgp_standard_1.6/ - class: Amphibia,amphibians - common_name: painted frog - family: Alytidae + vglId: mCynVol1 + vgp_phase: phase1 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_903992545.1 + class: Mammalia,mammals + common_name: common pipistrelle + family: Vespertilionidae hub: others - order: Anura - scientific_name: Discoglossus pictus - status: 5-asm_done - taxon_id: '8351' + order: Chiroptera + scientific_name: Pipistrellus pipistrellus + status: 8-NCBI + taxon_id: '59474' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Discoglossus_pictus/aDisPic1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pipistrellus_pipistrellus/mPipPip1/genomic_data/10x/ BN: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Discoglossus_pictus/aDisPic1/genomic_data/bionano/ + status: 4 + url: '#' HiC: + link: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pipistrellus_pipistrellus/mPipPip2/genomic_data/arima/ status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Discoglossus_pictus/aDisPic1/genomic_data/arima/ + url: '#' Ilm: status: 4 url: '#' @@ -2092,29 +2123,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Discoglossus_pictus/aDisPic1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pipistrellus_pipistrellus/mPipPip1/genomic_data/pacbio/ trio: '' - vglId: aDisPic1 - vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_013358685.1 - class: Actinopterygii,Bony fishes - common_name: warty frogfish - family: Antennariidae - hub: others - order: Lophiiformes - scientific_name: Antennarius maculatus + vglId: mPipPip1 + vgp_phase: phase3 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_009764475.2 + class: Chondrichthyes,cartilaginous fishes + common_name: smalltooth sawfish + family: Pristidae + hub: vgl + order: Rhinopristiformes + scientific_name: Pristis pectinata status: 8-NCBI - taxon_id: '882753' + taxon_id: '685728' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Antennarius_maculatus/fAntMac1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pristis_pectinata/sPriPec2/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Antennarius_maculatus/fAntMac1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pristis_pectinata/sPriPec2/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Antennarius_maculatus/fAntMac1/genomic_data/phase/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pristis_pectinata/sPriPec2/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -2123,29 +2154,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Antennarius_maculatus/fAntMac1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pristis_pectinata/sPriPec2/genomic_data/pacbio/ trio: '' - vglId: fAntMac1 + vglId: sPriPec2 vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_900324465.3 - class: Actinopterygii,Bony fishes - common_name: climbing perch - family: Anabantidae - hub: vgl - order: Anabantiformes - scientific_name: Anabas testudineus +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_902459505.2 + class: Amphibia,amphibians + common_name: Gabon caecilian + family: Dermophiidae + hub: others + order: Gymnophiona + scientific_name: Geotrypetes seraphini status: 8-NCBI - taxon_id: '64144' + taxon_id: '260995' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Anabas_testudineus/fAnaTes1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Geotrypetes_seraphini/aGeoSer1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Anabas_testudineus/fAnaTes1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Geotrypetes_seraphini/aGeoSer1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Anabas_testudineus/fAnaTes1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Geotrypetes_seraphini/aGeoSer1/genomic_data/dovetail/ Ilm: status: 4 url: '#' @@ -2154,29 +2185,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Anabas_testudineus/fAnaTes1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Geotrypetes_seraphini/aGeoSer1/genomic_data/pacbio/ trio: '' - vglId: fAnaTes1 + vglId: aGeoSer1 vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_018492685.1 - class: Actinopterygii,Bony fishes - common_name: American shad - family: Clupeidae - hub: vgl - order: Clupeiformes - scientific_name: Alosa sapidissima +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_014108415.1 + class: Mammalia,mammals + common_name: Pallas's mastiff bat + family: Molossidae + hub: others + order: Chiroptera + scientific_name: Molossus molossus status: 8-NCBI - taxon_id: '34773' + taxon_id: '27622' techs: 10X: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Molossus_molossus/mMolMol1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Alosa_sapidissima/fAloSap1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Molossus_molossus/mMolMol1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Alosa_sapidissima/fAloSap1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Molossus_molossus/mMolMol1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -2185,29 +2216,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Alosa_sapidissima/fAloSap1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Molossus_molossus/mMolMol1/genomic_data/pacbio/ trio: '' - vglId: fAloSap1 + vglId: mMolMol1 vgp_phase: phase2 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_017976425.1 - class: Enteropneusta,Bony fishes - common_name: banded archerfish - family: Toxotidae +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_015227675.2 + class: Mammalia,mammals + common_name: Norway rat + family: Muridae hub: others - order: '' - scientific_name: Toxotes jaculatrix + order: Rodentia + scientific_name: Rattus norvegicus status: 8-NCBI - taxon_id: '941984' + taxon_id: '10116' techs: 10X: - status: 4 + status: 1 url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Toxotes_jaculatrix/fToxJac2/genomic_data/bionano/ + url: '#' HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Toxotes_jaculatrix/fToxJac2/genomic_data/arima/ + url: '#' Ilm: status: 4 url: '#' @@ -2216,57 +2247,57 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Toxotes_jaculatrix/fToxJac2/genomic_data/pacbio/ + url: '#' trio: '' - vglId: fToxJac2 - vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_011762595.1 + vglId: mRatNor1 + vgp_phase: phase2 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_910594005.1 class: Mammalia,mammals - common_name: common bottlenose dolphin - family: Delphinidae - hub: vgl + common_name: red deer + family: Cervidae + hub: others order: Artiodactyla - scientific_name: Tursiops truncatus + scientific_name: Cervus elaphus status: 8-NCBI - taxon_id: '9739' + taxon_id: '9860' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Tursiops_truncatus/mTurTru1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cervus_elaphus/mCerEla1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Tursiops_truncatus/mTurTru1/genomic_data/bionano/ + url: '#' HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Tursiops_truncatus/mTurTru1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cervus_elaphus/mCerEla1/genomic_data/arima/ Ilm: - status: 4 + status: 1 url: '#' ONT: - status: 4 + status: 1 url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Tursiops_truncatus/mTurTru1/genomic_data/pacbio/ - trio: mTurTru2/mTurTru3 - vglId: mTurTru1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cervus_elaphus/mCerEla1/genomic_data/pacbio/ + trio: '' + vglId: mCerEla1 vgp_phase: phase2 - asm: '#' - class: Aves,birds - common_name: Swift parrot - family: Psittacidae + class: Reptilia,reptiles + common_name: tarantolino + family: Sphaerodactylidae hub: vgl - order: Psittaciformes - scientific_name: Lathamus discolor + order: Squamata + scientific_name: Euleptes europaea status: 2-data_progress - taxon_id: '678569' + taxon_id: '460621' techs: 10X: status: 4 url: '#' BN: - status: 2 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Euleptes_europaea/rEulEur1/genomic_data/bionano/ HiC: status: 0 url: '#' @@ -2279,26 +2310,27 @@ toc: PB: status: 0 url: '#' - vglId: bLatDis1 - vgp_phase: phase3 -- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pelecanus_crispus/bPelCri1/assembly_vgp_standard_2.1/ - class: Aves,birds - common_name: Dalmatian pelican - family: Pelecanidae - hub: others - order: Pelecaniformes - scientific_name: Pelecanus crispus - status: 5-asm_done - taxon_id: '36300' + trio: '' + vglId: rEulEur1 + vgp_phase: phase1 +- asm: '#' + class: Mammalia,mammals + common_name: Botta's pocket gopher + family: Geomyidae + hub: vgl + order: Rodentia + scientific_name: Thomomys bottae + status: 2-data_progress + taxon_id: '10013' techs: 10X: status: 4 url: '#' BN: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pelecanus_crispus/bPelCri1/genomic_data/bionano/ + status: 3 + url: '#' HiC: - status: 4 + status: 0 url: '#' Ilm: status: 4 @@ -2307,29 +2339,28 @@ toc: status: 4 url: '#' PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pelecanus_crispus/bPelCri1/genomic_data/pacbio/ - trio: '' - vglId: bPelCri1 + status: 0 + url: '#' + vglId: mThoBot1 vgp_phase: phase1 -- asm: '#' - class: Reptilia,reptiles - common_name: American alligator - family: Alligatoridae - hub: vgl - order: Crocodylia - scientific_name: Alligator mississippiensis - status: 2-data_progress - taxon_id: '8496' +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_003369685.2 + class: Mammalia,mammals + common_name: cattle + family: Bovidae + hub: others + order: Artiodactyla + scientific_name: Bos taurus + status: 8-NCBI + taxon_id: '9913' techs: 10X: - status: 4 + status: 1 url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Alligator_mississippiensis/rAllMis1/genomic_data/bionano/ + url: '#' HiC: - status: 0 + status: 1 url: '#' Ilm: status: 4 @@ -2338,30 +2369,30 @@ toc: status: 4 url: '#' PB: - status: 0 + status: 1 url: '#' trio: '' - vglId: rAllMis1 + vglId: mBosTau1 vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_009829125.1 - class: Actinopterygii,Bony fishes - common_name: Korean giant-fin mudskipper - family: Gobiidae +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_015852505.1 + class: Mammalia,mammals + common_name: Australian echidna + family: Tachyglossidae hub: vgl - order: Gobiiformes - scientific_name: Periophthalmus magnuspinnatus + order: Monotremata + scientific_name: Tachyglossus aculeatus status: 8-NCBI - taxon_id: '409849' + taxon_id: '9261' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Periophthalmus_magnuspinnatus/fPerMag1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Tachyglossus_aculeatus/mTacAcu1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Periophthalmus_magnuspinnatus/fPerMag1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Tachyglossus_aculeatus/mTacAcu1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Periophthalmus_magnuspinnatus/fPerMag1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Tachyglossus_aculeatus/mTacAcu1/genomic_data/phase/ Ilm: status: 4 url: '#' @@ -2370,60 +2401,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Periophthalmus_magnuspinnatus/fPerMag1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Tachyglossus_aculeatus/mTacAcu1/genomic_data/pacbio/ trio: '' - vglId: fPerMag1 + vglId: mTacAcu1 vgp_phase: phase2 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_015227675.2 +- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Tamandua_tetradactyla/mTamTet1/assembly_vgp_standard_1.7/ class: Mammalia,mammals - common_name: Norway rat - family: Muridae + common_name: southern tamandua + family: Myrmecophagidae hub: others - order: Rodentia - scientific_name: Rattus norvegicus - status: 8-NCBI - taxon_id: '10116' + order: Pilosa + scientific_name: Tamandua tetradactyla + status: 5-asm_done + taxon_id: '48850' techs: 10X: status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Tamandua_tetradactyla/mTamTet1/genomic_data/10x/ BN: status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Tamandua_tetradactyla/mTamTet1/genomic_data/bionano/ HiC: status: 1 - url: '#' - Ilm: - status: 4 - url: '#' - ONT: - status: 4 - url: '#' - PB: - status: 1 - url: '#' - trio: '' - vglId: mRatNor1 - vgp_phase: phase2 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_013347855.1 - class: Actinopteri,Bony fishes - common_name: European eel - family: Anguillidae - hub: others - order: Anguilliformes - scientific_name: Anguilla anguilla - status: 8-NCBI - taxon_id: '7936' - techs: - 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Anguilla_anguilla/fAngAng1/genomic_data/10x/ - BN: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Anguilla_anguilla/fAngAng1/genomic_data/bionano/ - HiC: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Anguilla_anguilla/fAngAng1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Tamandua_tetradactyla/mTamTet1/genomic_data/hic/ Ilm: status: 4 url: '#' @@ -2432,29 +2432,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Anguilla_anguilla/fAngAng1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Tamandua_tetradactyla/mTamTet1/genomic_data/pacbio/ trio: '' - vglId: fAngAng1 + vglId: mTamTet1 vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_903992535.2 - class: Mammalia,mammals - common_name: Eurasian water vole - family: Cricetidae - hub: others - order: Rodentia - scientific_name: Arvicola amphibius +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_017639655.2 + class: Aves,birds + common_name: lesser kestrel + family: Falconidae + hub: vgl + order: Falconiformes + scientific_name: Falco naumanni status: 8-NCBI - taxon_id: '1047088' + taxon_id: '148594' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Arvicola_amphibius/mArvAmp1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Falco_naumanni/bFalNau1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Arvicola_amphibius/mArvAmp1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Falco_naumanni/bFalNau1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Arvicola_amphibius/mArvAmp1/genomic_data/dovetail/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Falco_naumanni/bFalNau1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -2463,29 +2463,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Arvicola_amphibius/mArvAmp1/genomic_data/pacbio/ - trio: '' - vglId: mArvAmp1 - vgp_phase: phase1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Falco_naumanni/bFalNau1/genomic_data/pacbio/ + trio: bFalNau2/bFalNau3 + vglId: bFalNau1 + vgp_phase: phase4 - asm: '#' class: Aves,birds - common_name: seaside sparrow - family: Passerellidae + common_name: lesser rhea + family: Rheidae hub: vgl - order: Passeriformes - scientific_name: Ammodramus maritimus + order: Rheiformes + scientific_name: Rhea pennata status: 2-data_progress - taxon_id: '371905' + taxon_id: '8795' techs: 10X: status: 4 url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Ammodramus_maritimus/bAmmMai1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rhea_pennata/bPtePen1/genomic_data/bionano/ HiC: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Ammodramus_maritimus/bAmmMai1/genomic_data/arima/ + status: 0 + url: '#' Ilm: status: 4 url: '#' @@ -2493,30 +2493,30 @@ toc: status: 4 url: '#' PB: - status: 2 + status: 0 url: '#' trio: '' - vglId: bAmmMai1 + vglId: bPtePen1 vgp_phase: phase2 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_009819885.2 +- asm: '#' class: Aves,birds - common_name: Swainson's thrush - family: Turdidae + common_name: lammergeier + family: Accipitridae hub: vgl - order: Passeriformes - scientific_name: Catharus ustulatus - status: 8-NCBI - taxon_id: '91951' + order: Falconiformes + scientific_name: Gypaetus barbatus + status: 4-asm_progress + taxon_id: '33610' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Catharus_ustulatus/bCatUst1/genomic_data/10x/ + status: 4 + url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Catharus_ustulatus/bCatUst1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Gypaetus_barbatus/bGypBar2/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Catharus_ustulatus/bCatUst1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Gypaetus_barbatus/bGypBar2/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -2525,29 +2525,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Catharus_ustulatus/bCatUst1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Gypaetus_barbatus/bGypBar2/genomic_data/pacbio/ trio: '' - vglId: bCatUst1 + vglId: bGypBar2 vgp_phase: phase3 -- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lagopus_muta/bLagMut1/assembly_vgp_standard_2.0/ +- asm: '#' class: Aves,birds - common_name: rock ptarmigan - family: Phasianidae - hub: others - order: Galliformes - scientific_name: Lagopus muta - status: 5-asm_done - taxon_id: '64668' + common_name: Humboldt's penguin + family: Spheniscidae + hub: vgl + order: Sphenisciformes + scientific_name: Spheniscus humboldti + status: 2-data_progress + taxon_id: '9240' techs: 10X: status: 4 url: '#' BN: - status: 4 - url: '#' - HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lagopus_muta/bLagMut1/genomic_data/dovetail/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Spheniscus_humboldti/bSphHub1/genomic_data/bionano/ + HiC: + status: 0 + url: '#' Ilm: status: 4 url: '#' @@ -2555,61 +2555,61 @@ toc: status: 4 url: '#' PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lagopus_muta/bLagMut1/genomic_data/pacbio/ + status: 0 + url: '#' trio: '' - vglId: bLagMut1 - vgp_phase: phase3 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_009819705.1 - class: Actinopterygii,Bony fishes - common_name: Atlantic halibut - family: Pleuronectidae - hub: vgl - order: Pleuronectiformes - scientific_name: Hippoglossus hippoglossus + vglId: bSphHub1 + vgp_phase: phase1 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_009873245.2 + class: Mammalia,mammals + common_name: Blue whale + family: Balaenopteridae + hub: others + order: Artiodactyla + scientific_name: Balaenoptera musculus status: 8-NCBI - taxon_id: '8267' + taxon_id: '9771' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Hippoglossus_hippoglossus/fHipHip1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Balaenoptera_musculus/mBalMus1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Hippoglossus_hippoglossus/fHipHip1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Balaenoptera_musculus/mBalMus1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Hippoglossus_hippoglossus/fHipHip1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Balaenoptera_musculus/mBalMus1/genomic_data/dovetail/ Ilm: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Balaenoptera_musculus/mBalMus1/genomic_data/illumina/ ONT: status: 4 url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Hippoglossus_hippoglossus/fHipHip1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Balaenoptera_musculus/mBalMus1/genomic_data/pacbio/ trio: '' - vglId: fHipHip1 - vgp_phase: phase1 -- asm: '#' + vglId: mBalMus1 + vgp_phase: phase2 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_008822115.3 class: Aves,birds - common_name: saltmarsh sparrow - family: Passerellidae + common_name: zebra finch + family: Estrildidae hub: vgl order: Passeriformes - scientific_name: Ammodramus caudacutus - status: 2-data_progress - taxon_id: '69262' + scientific_name: Taeniopygia guttata + status: 8-NCBI + taxon_id: '59729' techs: 10X: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Taeniopygia_guttata/bTaeGut2/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Ammodramus_caudacutus/bAmmCau1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Taeniopygia_guttata/bTaeGut2/genomic_data/bionano/ HiC: status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Taeniopygia_guttata/bTaeGut2/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -2617,20 +2617,20 @@ toc: status: 4 url: '#' PB: - status: 2 - url: '#' - trio: '' - vglId: bAmmCau1 - vgp_phase: phase4 + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Taeniopygia_guttata/bTaeGut2/genomic_data/pacbio/ + trio: bTaeGut3/bTaeGut4 + vglId: bTaeGut2 + vgp_phase: phase1 - asm: '#' - class: Aves,birds - common_name: song sparrow - family: Passerellidae + class: Amphibia,amphibians + common_name: rufous frog + family: Leptodactylidae hub: vgl - order: Passeriformes - scientific_name: Melospiza melodia + order: Anura + scientific_name: Leptodactylus fuscus status: 2-data_progress - taxon_id: '44397' + taxon_id: '238119' techs: 10X: status: 4 @@ -2639,8 +2639,8 @@ toc: status: 1 url: '#' HiC: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Melospiza_melodia/bMelMel1/genomic_data/arima/ + status: 2 + url: '#' Ilm: status: 4 url: '#' @@ -2648,30 +2648,29 @@ toc: status: 4 url: '#' PB: - status: 2 + status: 0 url: '#' - trio: '' - vglId: bMelMel1 - vgp_phase: phase3 -- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Diceros_bicornis/mDicBic1/assembly_curated/ - class: Mammalia,mammals - common_name: black rhinoceros - family: Rhinocerotidae - hub: vgl - order: Perissodactyla - scientific_name: Diceros bicornis - status: 7-asm_curated - taxon_id: '9805' + vglId: aLepFus1 + vgp_phase: phase2 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_900634775.2 + class: Actinopterygii,Bony fishes + common_name: blunt-snouted clingfish + family: Gobiesocidae + hub: others + order: Blenniiformes + scientific_name: Gouania willdenowi + status: 8-NCBI + taxon_id: '441366' techs: 10X: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Gouania_willdenowi/fGouWil2/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Diceros_bicornis/mDicBic1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Gouania_willdenowi/fGouWil2/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Diceros_bicornis/mDicBic1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Gouania_willdenowi/fGouWil2/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -2680,26 +2679,57 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Diceros_bicornis/mDicBic1/genomic_data/pacbio/ - trio: mDicBic2/mDicBic3 - vglId: mDicBic1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Gouania_willdenowi/fGouWil2/genomic_data/pacbio/ + trio: '' + vglId: fGouWil2 vgp_phase: phase1 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_009829125.1 + class: Actinopterygii,Bony fishes + common_name: Korean giant-fin mudskipper + family: Gobiidae + hub: vgl + order: Gobiiformes + scientific_name: Periophthalmus magnuspinnatus + status: 8-NCBI + taxon_id: '409849' + techs: + 10X: + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Periophthalmus_magnuspinnatus/fPerMag1/genomic_data/10x/ + BN: + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Periophthalmus_magnuspinnatus/fPerMag1/genomic_data/bionano/ + HiC: + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Periophthalmus_magnuspinnatus/fPerMag1/genomic_data/arima/ + Ilm: + status: 4 + url: '#' + ONT: + status: 4 + url: '#' + PB: + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Periophthalmus_magnuspinnatus/fPerMag1/genomic_data/pacbio/ + trio: '' + vglId: fPerMag1 + vgp_phase: phase2 - asm: '#' - class: Aves,birds - common_name: Humboldt's penguin - family: Spheniscidae + class: Enteropneusta,jawless,Agnatha + common_name: acorn worm + family: Harrimaniidae hub: vgl - order: Sphenisciformes - scientific_name: Spheniscus humboldti + order: Enteropneusta + scientific_name: Saccoglossus kowalevskii status: 2-data_progress - taxon_id: '9240' + taxon_id: '10224' techs: 10X: status: 4 url: '#' BN: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Spheniscus_humboldti/bSphHub1/genomic_data/bionano/ + status: 2 + url: '#' HiC: status: 0 url: '#' @@ -2712,27 +2742,26 @@ toc: PB: status: 0 url: '#' - trio: '' - vglId: bSphHub1 - vgp_phase: phase1 + vglId: kSacKow2 + vgp_phase: phase2 - asm: '#' - class: Mammalia,mammals - common_name: Blainville's beaked whale - family: Ziphiidae + class: Amphibia,amphibians + common_name: Fleay's barred frog + family: Myobatrachidae hub: vgl - order: Artiodactyla - scientific_name: Mesoplodon densirostris - status: 3-data_done - taxon_id: '48708' + order: Anura + scientific_name: Mixophyes fleayi + status: 0-data_queued + taxon_id: '000000' techs: 10X: status: 4 url: '#' BN: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Mesoplodon_densirostris/mMesDen1/genomic_data/bionano/ + status: 0 + url: '#' HiC: - status: 1 + status: 0 url: '#' Ilm: status: 4 @@ -2741,30 +2770,29 @@ toc: status: 4 url: '#' PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Mesoplodon_densirostris/mMesDen1/genomic_data/pacbio/ - trio: '' - vglId: mMesDen1 - vgp_phase: phase2 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_009764565.3 - class: Reptilia,reptiles - common_name: leatherback sea turtle - family: Dermochelyidae + status: 0 + url: '#' + vglId: aMixFle1 + vgp_phase: phase3 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_015220235.1 + class: Mammalia,mammals + common_name: southern two-toed sloth + family: Megalonychidae hub: vgl - order: Testudines - scientific_name: Dermochelys coriacea + order: Folivora + scientific_name: Choloepus didactylus status: 8-NCBI - taxon_id: '27794' + taxon_id: '27675' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dermochelys_coriacea/rDerCor1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Choloepus_didactylus/mChoDid1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dermochelys_coriacea/rDerCor1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Choloepus_didactylus/mChoDid1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dermochelys_coriacea/rDerCor1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Choloepus_didactylus/mChoDid1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -2773,60 +2801,60 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dermochelys_coriacea/rDerCor1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Choloepus_didactylus/mChoDid1/genomic_data/pacbio/ trio: '' - vglId: rDerCor1 + vglId: mChoDid1 vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_007399415.2 - class: Reptilia,reptiles - common_name: Goodes thornscrub tortoise - family: Testudinidae - hub: vgl - order: Testudines - scientific_name: Gopherus evgoodei - status: 8-NCBI - taxon_id: '1825980' +- asm: '#' + class: Actinopterygii,Bony fishes + common_name: shanny + family: Blenniidae + hub: others + order: Blenniiformes + scientific_name: Lipophrys pholis + status: 2-data_progress + taxon_id: '56720' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Gopherus_evgoodei/rGopEvg1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lipophrys_pholis/fLipPho2/genomic_data/10x/ BN: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Gopherus_evgoodei/rGopEvg1/genomic_data/bionano/ + status: 0 + url: '#' HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Gopherus_evgoodei/rGopEvg1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lipophrys_pholis/fLipPho2/genomic_data/arima/ Ilm: - status: 4 + status: 0 url: '#' ONT: - status: 4 + status: 0 url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Gopherus_evgoodei/rGopEvg1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lipophrys_pholis/fLipPho2/genomic_data/pacbio/ trio: '' - vglId: rGopEvg1 - vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_014108255.1 - class: Mammalia,mammals - common_name: greater horseshoe bat - family: Rhinolophidae - hub: vgl - order: Chiroptera - scientific_name: Rhinolophus ferrumequinum + vglId: fLipPho2 + vgp_phase: phase3 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_901765095.2 + class: Amphibia,amphibians + common_name: tiny Cayenne caecilian + family: Siphonopidae + hub: others + order: Gymnophiona + scientific_name: Microcaecilia unicolor status: 8-NCBI - taxon_id: '59479' + taxon_id: '1415580' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rhinolophus_ferrumequinum/mRhiFer1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Microcaecilia_unicolor/aMicUni1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rhinolophus_ferrumequinum/mRhiFer1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Microcaecilia_unicolor/aMicUni1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rhinolophus_ferrumequinum/mRhiFer1/genomic_data/phase/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Microcaecilia_unicolor/aMicUni1/genomic_data/dovetail/ Ilm: status: 4 url: '#' @@ -2835,29 +2863,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rhinolophus_ferrumequinum/mRhiFer1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Microcaecilia_unicolor/aMicUni1/genomic_data/pacbio/ trio: '' - vglId: mRhiFer1 + vglId: aMicUni1 vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_009819535.1 - class: Reptilia,reptiles - common_name: sand lizard - family: Lacertidae +- asm: '#' + class: Amphibia,amphibians + common_name: plains spadefoot toad + family: Pelobatidae hub: vgl - order: Squamata - scientific_name: Lacerta agilis - status: 8-NCBI - taxon_id: '80427' + order: Anura + scientific_name: Spea bombifrons + status: 2-data_progress + taxon_id: '233779' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lacerta_agilis/rLacAgi1/genomic_data/10x/ + status: 4 + url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lacerta_agilis/rLacAgi1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Spea_bombifrons/aSpeBom1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lacerta_agilis/rLacAgi1/genomic_data/arima/ + url: '#' Ilm: status: 4 url: '#' @@ -2865,29 +2893,29 @@ toc: status: 4 url: '#' PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lacerta_agilis/rLacAgi1/genomic_data/pacbio/ + status: 0 + url: '#' trio: '' - vglId: rLacAgi1 + vglId: aSpeBom1 vgp_phase: phase1 - asm: '#' - class: Amphibia,amphibians - common_name: Riggenbach's reed frog - family: Hyperoliidae + class: Aves,birds + common_name: Common canary + family: Fringillidae hub: vgl - order: Anura - scientific_name: Hyperolius riggenbachi - status: 2-data_progress - taxon_id: '752182' + order: Passeriformes + scientific_name: Serinus canaria + status: 0-data_queued + taxon_id: '9135' techs: 10X: status: 4 url: '#' BN: - status: 1 + status: 0 url: '#' HiC: - status: 2 + status: 0 url: '#' Ilm: status: 4 @@ -2898,58 +2926,58 @@ toc: PB: status: 0 url: '#' - vglId: aHypRig1 - vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_009769605.1 - class: Aves,birds - common_name: Abyssinian ground-hornbill - family: Bucorvidae - hub: vgl - order: Bucerotiformes - scientific_name: Bucorvus abyssinicus - status: 8-NCBI - taxon_id: '153643' + vglId: bSerCaa1 + vgp_phase: phase3 +- asm: '#' + class: Actinopterygii,Bony fishes + common_name: John dory + family: Zeidae + hub: others + order: Zeiformes + scientific_name: Zeus faber + status: 2-data_progress + taxon_id: '64108' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Bucorvus_abyssinicus/bBucAby1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Zeus_faber/fZeuFab1/genomic_data/10x/ BN: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Bucorvus_abyssinicus/bBucAby1/genomic_data/bionano/ + status: 0 + url: '#' HiC: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Bucorvus_abyssinicus/bBucAby1/genomic_data/arima/ + status: 0 + url: '#' Ilm: - status: 4 + status: 0 url: '#' ONT: - status: 4 + status: 0 url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Bucorvus_abyssinicus/bBucAby1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Zeus_faber/fZeuFab1/genomic_data/pacbio/ trio: '' - vglId: bBucAby1 + vglId: fZeuFab1 vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_009819795.1 - class: Aves,birds - common_name: tufted duck - family: Anatidae - hub: vgl - order: Anseriformes - scientific_name: Aythya fuligula +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_013347855.1 + class: Actinopteri,Bony fishes + common_name: European eel + family: Anguillidae + hub: others + order: Anguilliformes + scientific_name: Anguilla anguilla status: 8-NCBI - taxon_id: '219594' + taxon_id: '7936' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Aythya_fuligula/bAytFul2/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Anguilla_anguilla/fAngAng1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Aythya_fuligula/bAytFul2/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Anguilla_anguilla/fAngAng1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Aythya_fuligula/bAytFul2/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Anguilla_anguilla/fAngAng1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -2958,59 +2986,60 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Aythya_fuligula/bAytFul2/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Anguilla_anguilla/fAngAng1/genomic_data/pacbio/ trio: '' - vglId: bAytFul2 + vglId: fAngAng1 vgp_phase: phase1 -- asm: '#' - class: Aves,birds - common_name: chicken - family: Phasianidae - hub: vgl - order: Galliformes - scientific_name: Gallus gallus - status: 7-asm_curated - taxon_id: '9031' +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_902459465.1 + class: Asteroidea,echinoderms + common_name: European starfish + family: Asteriidae + hub: others + order: Forcipulatida + scientific_name: Asterias rubens + status: 8-NCBI + taxon_id: '7604' techs: 10X: status: 4 url: '#' BN: - status: 1 + status: 4 url: '#' HiC: status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Asterias_rubens/eAstRub1/genomic_data/dovetail/ Ilm: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Asterias_rubens/eAstRub1/genomic_data/illumina/ ONT: status: 4 url: '#' PB: status: 1 - url: '#' - vglId: bGalGal5 - vgp_phase: other -- asm: '#' - class: Reptilia,reptiles - common_name: royal ground snake - family: Dipsadidae + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Asterias_rubens/eAstRub1/genomic_data/pacbio/ + trio: '' + vglId: eAstRub1 + vgp_phase: phase1 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_007364275.1 + class: Actinopterygii,Bony fishes + common_name: flier cichlid + family: Cichlidae hub: vgl - order: Squamata - scientific_name: Erythrolamprus reginae - status: 2-data_progress - taxon_id: '121349' + order: Cichliformes + scientific_name: Archocentrus centrarchus + status: 8-NCBI + taxon_id: '63155' techs: 10X: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Archocentrus_centrarchus/fArcCen1/genomic_data/10x/ BN: status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Archocentrus_centrarchus/fArcCen1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Erythrolamprus_reginae/rEryReg1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Archocentrus_centrarchus/fArcCen1/genomic_data/phase/ Ilm: status: 4 url: '#' @@ -3018,30 +3047,30 @@ toc: status: 4 url: '#' PB: - status: 2 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Archocentrus_centrarchus/fArcCen1/genomic_data/pacbio/ trio: '' - vglId: rEryReg1 - vgp_phase: phase2 -- asm: '#' - class: Actinopterygii,Bony fishes - common_name: pejerrey - family: Atherinopsidae + vglId: fArcCen1 + vgp_phase: phase1 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_009819605.1 + class: Aves,birds + common_name: Common tern + family: Laridae hub: vgl - order: Atheriniformes - scientific_name: Odontesthes bonariensis - status: 0-data_queued - taxon_id: '219752' + order: Charadriiformes + scientific_name: Sterna hirundo + status: 8-NCBI + taxon_id: '108405' techs: 10X: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sterna_hirundo/bSteHir1/genomic_data/10x/ BN: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sterna_hirundo/bSteHir1/genomic_data/bionano/ HiC: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sterna_hirundo/bSteHir1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -3049,29 +3078,30 @@ toc: status: 4 url: '#' PB: - status: 0 - url: '#' - vglId: fOdoBon1 + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sterna_hirundo/bSteHir1/genomic_data/pacbio/ + trio: '' + vglId: bSteHir1 vgp_phase: phase2 -- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Falco_biarmicus/bFalBia1/assembly_vgp_standard_2.0/ +- asm: '#' class: Aves,birds - common_name: lanner falcon - family: Falconidae + common_name: chicken + family: Phasianidae hub: vgl - order: Falconiformes - scientific_name: Falco biarmicus - status: 6-asm_curation - taxon_id: '345155' + order: Galliformes + scientific_name: Gallus gallus + status: 7-asm_curated + taxon_id: '9031' techs: 10X: status: 4 url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Falco_biarmicus/bFalBia1/genomic_data/bionano/ + url: '#' HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Falco_biarmicus/bFalBia1/genomic_data/arima/ + url: '#' Ilm: status: 4 url: '#' @@ -3080,29 +3110,28 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Falco_biarmicus/bFalBia1/genomic_data/pacbio/ - trio: '' - vglId: bFalBia1 - vgp_phase: phase4 -- asm: '#' - class: Chondrichthyes,cartilaginous fishes - common_name: horn shark - family: Heterodontidae + url: '#' + vglId: bGalGal4 + vgp_phase: other +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_900324465.3 + class: Actinopterygii,Bony fishes + common_name: climbing perch + family: Anabantidae hub: vgl - order: Heterodontiformes - scientific_name: Heterodontus francisci - status: 2-data_progress - taxon_id: '7792' + order: Anabantiformes + scientific_name: Anabas testudineus + status: 8-NCBI + taxon_id: '64144' techs: 10X: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Anabas_testudineus/fAnaTes1/genomic_data/10x/ BN: status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Anabas_testudineus/fAnaTes1/genomic_data/bionano/ HiC: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Anabas_testudineus/fAnaTes1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -3110,29 +3139,30 @@ toc: status: 4 url: '#' PB: - status: 0 - url: '#' - vglId: sHetFra1 + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Anabas_testudineus/fAnaTes1/genomic_data/pacbio/ + trio: '' + vglId: fAnaTes1 vgp_phase: phase1 -- asm: '#' +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_903992535.2 class: Mammalia,mammals - common_name: false killer whale - family: Delphinidae - hub: vgl - order: Artiodactyla - scientific_name: Pseudorca crassidens - status: 2-data_progress - taxon_id: '82174' + common_name: Eurasian water vole + family: Cricetidae + hub: others + order: Rodentia + scientific_name: Arvicola amphibius + status: 8-NCBI + taxon_id: '1047088' techs: 10X: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Arvicola_amphibius/mArvAmp1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pseudorca_crassidens/mPseCra1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Arvicola_amphibius/mArvAmp1/genomic_data/bionano/ HiC: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Arvicola_amphibius/mArvAmp1/genomic_data/dovetail/ Ilm: status: 4 url: '#' @@ -3141,29 +3171,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pseudorca_crassidens/mPseCra1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Arvicola_amphibius/mArvAmp1/genomic_data/pacbio/ trio: '' - vglId: mPseCra1 - vgp_phase: phase3 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_900964775.1 - class: Actinopterygii,Bony fishes - common_name: Asian bonytongue - family: Osteoglossidae + vglId: mArvAmp1 + vgp_phase: phase1 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_901699155.2 + class: Aves,birds + common_name: European turtle dove + family: Columbidae hub: others - order: Osteoglossiformes - scientific_name: Scleropages formosus + order: Columbiformes + scientific_name: Streptopelia turtur status: 8-NCBI - taxon_id: '113540' + taxon_id: '177155' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Scleropages_formosus/fSclFor1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Streptopelia_turtur/bStrTur1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Scleropages_formosus/fSclFor1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Streptopelia_turtur/bStrTur1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Scleropages_formosus/fSclFor1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Streptopelia_turtur/bStrTur1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -3172,60 +3202,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Scleropages_formosus/fSclFor1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Streptopelia_turtur/bStrTur1/genomic_data/pacbio/ trio: '' - vglId: fSclFor1 + vglId: bStrTur1 vgp_phase: phase1 -- asm: '#' - class: Chondrichthyes,cartilaginous fishes - common_name: gold dust stingray - family: Potamotrygonidae +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_009769525.1 + class: Aves,birds + common_name: yellow-throated sandgrouse + family: Pteroclidae hub: vgl - order: Myliobatiformes - scientific_name: Potamotrygon marinae - status: 4-asm_progress - taxon_id: '000000' - techs: - 10X: - status: 4 - url: '#' - BN: - status: 1 - url: '#' - HiC: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Potamotrygon_marinae/sPotMar1/genomic_data/arima/ - Ilm: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Potamotrygon_marinae/sPotMar1/genomic_data/illumina/ - ONT: - status: 4 - url: '#' - PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Potamotrygon_marinae/sPotMar1/genomic_data/pacbio/ - trio: '' - vglId: sPotMar1 - vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_902500255.1 - class: Actinopterygii,Bony fishes - common_name: prehistoric monster fish - family: Batrachoididae - hub: others - order: Batrachoidiformes - scientific_name: Thalassophryne amazonica + order: Pterocliformes + scientific_name: Pterocles gutturalis status: 8-NCBI - taxon_id: '390379' + taxon_id: '240206' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Thalassophryne_amazonica/fThaAma1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pterocles_gutturalis/bPteGut1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Thalassophryne_amazonica/fThaAma1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pterocles_gutturalis/bPteGut1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Thalassophryne_amazonica/fThaAma1/genomic_data/dovetail/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pterocles_gutturalis/bPteGut1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -3234,30 +3233,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Thalassophryne_amazonica/fThaAma1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pterocles_gutturalis/bPteGut1/genomic_data/pacbio/ trio: '' - vglId: fThaAma1 + vglId: bPteGut1 vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_014839755.1 - class: Aves,birds - common_name: garden warbler - family: Sylviidae +- asm: '#' + class: Actinopterygii,Bony fishes + common_name: chub mackerel + family: Scombridae hub: vgl - order: Passeriformes - scientific_name: Sylvia borin - status: 8-NCBI - taxon_id: '73324' + order: Scombriformes + scientific_name: Scomber japonicus + status: 3-data_done + taxon_id: '13676' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sylvia_borin/bSylBor1/genomic_data/10x/ + status: 4 + url: '#' BN: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sylvia_borin/bSylBor1/genomic_data/bionano/ + status: 0 + url: '#' HiC: - link: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sylvia_borin/bSylBor2/genomic_data/arima/ status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Scomber_japonicus/fScoJap1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -3266,26 +3264,26 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sylvia_borin/bSylBor1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Scomber_japonicus/fScoJap1/genomic_data/pacbio/ trio: '' - vglId: bSylBor1 - vgp_phase: phase2 + vglId: fScoJap1 + vgp_phase: phase1 - asm: '#' - class: Reptilia,reptiles - common_name: olive python - family: Pythonidae + class: Aves,birds + common_name: blue-and-yellow macaw + family: Psittacidae hub: vgl - order: Squamata - scientific_name: Liasis olivaceus + order: Psittaciformes + scientific_name: Ara ararauna status: 2-data_progress - taxon_id: '283338' + taxon_id: '9226' techs: 10X: status: 4 url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Liasis_olivaceus/rLiaOli1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Ara_ararauna/bAraAra1/genomic_data/bionano/ HiC: status: 0 url: '#' @@ -3299,57 +3297,27 @@ toc: status: 0 url: '#' trio: '' - vglId: rLiaOli1 - vgp_phase: phase2 -- asm: '#' - class: Chondrichthyes,cartilaginous fishes - common_name: bramble shark - family: Echinorhinidae - hub: vgl - order: Echinorhiniformes - scientific_name: Echinorhinus brucus - status: 0-data_queued - taxon_id: '862826' - techs: - 10X: - status: 4 - url: '#' - BN: - status: 0 - url: '#' - HiC: - status: 0 - url: '#' - Ilm: - status: 4 - url: '#' - ONT: - status: 4 - url: '#' - PB: - status: 0 - url: '#' - vglId: sEchBru1 - vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_014108415.1 - class: Mammalia,mammals - common_name: Pallas's mastiff bat - family: Molossidae + vglId: bAraAra1 + vgp_phase: phase3 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_017639745.1 + class: Actinopterygii,Bony fishes + common_name: Boeseman's rainbowfish + family: Melanotaeniidae hub: others - order: Chiroptera - scientific_name: Molossus molossus + order: Atheriniformes + scientific_name: Melanotaenia boesemani status: 8-NCBI - taxon_id: '27622' + taxon_id: '1250792' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Molossus_molossus/mMolMol1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Melanotaenia_boesemani/fMelBoe1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Molossus_molossus/mMolMol1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Melanotaenia_boesemani/fMelBoe1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Molossus_molossus/mMolMol1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Melanotaenia_boesemani/fMelBoe1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -3358,29 +3326,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Molossus_molossus/mMolMol1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Melanotaenia_boesemani/fMelBoe1/genomic_data/pacbio/ trio: '' - vglId: mMolMol1 - vgp_phase: phase2 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_013358815.1 + vglId: fMelBoe1 + vgp_phase: phase1 +- asm: '#' class: Actinopterygii,Bony fishes - common_name: electric eel - family: Gymnotidae - hub: others - order: Gymnotiformes - scientific_name: Electrophorus electricus - status: 8-NCBI - taxon_id: '8005' + common_name: lesser salmon catfish + family: Ariidae + hub: vgl + order: Siluriformes + scientific_name: Neoarius graeffei + status: 2-data_progress + taxon_id: '443677' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Electrophorus_electricus/fEleEle1/genomic_data/10x/ + status: 4 + url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Electrophorus_electricus/fEleEle1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Neoarius_graeffei/fNeoGra1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Electrophorus_electricus/fEleEle1/genomic_data/hic/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Neoarius_graeffei/fNeoGra1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -3388,61 +3356,61 @@ toc: status: 4 url: '#' PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Electrophorus_electricus/fEleEle1/genomic_data/pacbio/ + status: 2 + url: '#' trio: '' - vglId: fEleEle1 + vglId: fNeoGra1 vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_910594005.1 +- asm: '#' class: Mammalia,mammals - common_name: red deer - family: Cervidae - hub: others + common_name: pygmy sperm whale + family: Physeteridae + hub: vgl order: Artiodactyla - scientific_name: Cervus elaphus - status: 8-NCBI - taxon_id: '9860' + scientific_name: Kogia breviceps + status: 3-data_done + taxon_id: '27615' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cervus_elaphus/mCerEla1/genomic_data/10x/ + status: 4 + url: '#' BN: status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Kogia_breviceps/mKogBre1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cervus_elaphus/mCerEla1/genomic_data/arima/ + url: '#' Ilm: - status: 1 + status: 4 url: '#' ONT: - status: 1 + status: 4 url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cervus_elaphus/mCerEla1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Kogia_breviceps/mKogBre1/genomic_data/pacbio/ trio: '' - vglId: mCerEla1 + vglId: mKogBre1 vgp_phase: phase2 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_014839995.1 - class: Actinopterygii,Bony fishes - common_name: freshwater garfish - family: Belonidae +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_905171775.1 + class: Amphibia,amphibians + common_name: common frog + family: Ranidae hub: others - order: Beloniformes - scientific_name: Xenentodon cancila + order: Anura + scientific_name: Rana temporaria status: 8-NCBI - taxon_id: '129108' + taxon_id: '8407' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Xenentodon_cancila/fXenCan1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rana_temporaria/aRanTem1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Xenentodon_cancila/fXenCan1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rana_temporaria/aRanTem1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Xenentodon_cancila/fXenCan1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rana_temporaria/aRanTem1/genomic_data/dovetail/ Ilm: status: 4 url: '#' @@ -3451,29 +3419,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Xenentodon_cancila/fXenCan1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rana_temporaria/aRanTem1/genomic_data/pacbio/ trio: '' - vglId: fXenCan1 + vglId: aRanTem1 vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_902362185.1 - class: Actinopterygii,Bony fishes - common_name: milkfish - family: Chanidae - hub: others - order: Gonorynchiformes - scientific_name: Chanos chanos - status: 8-NCBI - taxon_id: '29144' +- asm: '#' + class: Chondrichthyes,cartilaginous fishes + common_name: horn shark + family: Heterodontidae + hub: vgl + order: Heterodontiformes + scientific_name: Heterodontus francisci + status: 2-data_progress + taxon_id: '7792' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Chanos_chanos/fChaCha1/genomic_data/10x/ + status: 4 + url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Chanos_chanos/fChaCha1/genomic_data/bionano/ + url: '#' HiC: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Chanos_chanos/fChaCha1/genomic_data/dovetail/ + status: 0 + url: '#' Ilm: status: 4 url: '#' @@ -3481,30 +3449,60 @@ toc: status: 4 url: '#' PB: + status: 0 + url: '#' + vglId: sHetFra1 + vgp_phase: phase1 +- asm: '#' + class: Aves,birds + common_name: tawny frogmouth + family: Podargidae + hub: vgl + order: Caprimulgiformes + scientific_name: Podargus strigoides + status: 2-data_progress + taxon_id: '8905' + techs: + 10X: + status: 4 + url: '#' + BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Chanos_chanos/fChaCha1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Podargus_strigoides/bPodStr1/genomic_data/bionano/ + HiC: + status: 2 + url: '#' + Ilm: + status: 4 + url: '#' + ONT: + status: 4 + url: '#' + PB: + status: 0 + url: '#' trio: '' - vglId: fChaCha1 + vglId: bPodStr1 vgp_phase: phase1 - asm: '#' - class: Actinopterygii,Bony fishes - common_name: rainbow smelt - family: Osmeridae + class: Reptilia,reptiles + common_name: royal ground snake + family: Dipsadidae hub: vgl - order: Osmeriformes - scientific_name: Osmerus mordax + order: Squamata + scientific_name: Erythrolamprus reginae status: 2-data_progress - taxon_id: '8014' + taxon_id: '121349' techs: 10X: status: 4 url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Osmerus_mordax/fOsmMor3/genomic_data/bionano/ + url: '#' HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Osmerus_mordax/fOsmMor3/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Erythrolamprus_reginae/rEryReg1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -3512,30 +3510,31 @@ toc: status: 4 url: '#' PB: - status: 2 + status: 1 url: '#' trio: '' - vglId: fOsmMor3 - vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_900634625.2 - class: Actinopterygii,Bony fishes - common_name: Indian glassy fish - family: Ambassidae + vglId: rEryReg1 + vgp_phase: phase2 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_016904835.1 + class: Aves,birds + common_name: rifleman + family: Acanthisittidae hub: vgl - order: Ovalentaria - scientific_name: Parambassis ranga + order: Passeriformes + scientific_name: Acanthisitta chloris status: 8-NCBI - taxon_id: '210632' + taxon_id: '57068' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Parambassis_ranga/fParRan2/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Acanthisitta_chloris/bAcaChl1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Parambassis_ranga/fParRan2/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Acanthisitta_chloris/bAcaChl1/genomic_data/bionano/ HiC: + link: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Acanthisitta_chloris/bAcaChl4/genomic_data/arima/ status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Parambassis_ranga/fParRan2/genomic_data/arima/ + url: '#' Ilm: status: 4 url: '#' @@ -3544,29 +3543,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Parambassis_ranga/fParRan2/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Acanthisitta_chloris/bAcaChl1/genomic_data/pacbio/ trio: '' - vglId: fParRan2 + vglId: bAcaChl1 vgp_phase: phase1 -- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pholidichthys_leucotaenia/fPhoLeu1/assembly_curated/ - class: Actinopterygii,Bony fishes - common_name: convict blenny - family: Pholidichthyidae +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_902655055.2 + class: Mammalia,mammals + common_name: Eurasian river otter + family: Mustelidae hub: others - order: Cichliformes - scientific_name: Pholidichthys leucotaenia - status: 7-asm_curated - taxon_id: '390368' + order: Carnivora + scientific_name: Lutra lutra + status: 8-NCBI + taxon_id: '9657' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pholidichthys_leucotaenia/fPhoLeu1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lutra_lutra/mLutLut1/genomic_data/10x/ BN: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pholidichthys_leucotaenia/fPhoLeu1/genomic_data/bionano/ + status: 4 + url: '#' HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pholidichthys_leucotaenia/fPhoLeu1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lutra_lutra/mLutLut1/genomic_data/baylor-hic/ Ilm: status: 4 url: '#' @@ -3575,29 +3574,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pholidichthys_leucotaenia/fPhoLeu1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lutra_lutra/mLutLut1/genomic_data/pacbio/ trio: '' - vglId: fPhoLeu1 + vglId: mLutLut1 vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_009829145.1 - class: Aves,birds - common_name: lance-tailed manakin - family: Pipridae - hub: vgl - order: Passeriformes - scientific_name: Chiroxiphia lanceolata +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_903684865.1 + class: Actinopterygii,Bony fishes + common_name: zebrafish + family: Danionidae + hub: others + order: Cypriniformes + scientific_name: Danio rerio status: 8-NCBI - taxon_id: '296741' + taxon_id: '7955' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Chiroxiphia_lanceolata/bChiLan1/genomic_data/10x/ + url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Chiroxiphia_lanceolata/bChiLan1/genomic_data/bionano/ + url: '#' HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Chiroxiphia_lanceolata/bChiLan1/genomic_data/arima/ + url: '#' Ilm: status: 4 url: '#' @@ -3606,59 +3605,59 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Chiroxiphia_lanceolata/bChiLan1/genomic_data/pacbio/ + url: '#' trio: '' - vglId: bChiLan1 + vglId: fDreABH1 vgp_phase: phase1 -- asm: '#' +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_900246225.5 class: Actinopterygii,Bony fishes - common_name: John dory - family: Zeidae + common_name: eastern happy + family: Cichlidae hub: others - order: Zeiformes - scientific_name: Zeus faber - status: 2-data_progress - taxon_id: '64108' + order: Cichliformes + scientific_name: Astatotilapia calliptera + status: 8-NCBI + taxon_id: '8154' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Zeus_faber/fZeuFab1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Astatotilapia_calliptera/fAstCal1/genomic_data/10x/ BN: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Astatotilapia_calliptera/fAstCal1/genomic_data/bionano/ HiC: - status: 0 + status: 4 url: '#' Ilm: - status: 0 + status: 4 url: '#' ONT: - status: 0 + status: 4 url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Zeus_faber/fZeuFab1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Astatotilapia_calliptera/fAstCal1/genomic_data/pacbio/ trio: '' - vglId: fZeuFab1 - vgp_phase: phase1 + vglId: fAstCal1 + vgp_phase: phase3 - asm: '#' - class: Mammalia,mammals - common_name: North Atlantic right whale - family: Balaenidae + class: Amphibia,amphibians + common_name: Sardinian tree frog + family: Hylidae hub: vgl - order: Artiodactyla - scientific_name: Eubalaena glacialis - status: 3-data_done - taxon_id: '27606' + order: Anura + scientific_name: Hyla sarda + status: 2-data_progress + taxon_id: '327740' techs: 10X: status: 4 url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Eubalaena_glacialis/mEubGla1/genomic_data/bionano/ + url: '#' HiC: - status: 1 + status: 0 url: '#' Ilm: status: 4 @@ -3667,30 +3666,29 @@ toc: status: 4 url: '#' PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Eubalaena_glacialis/mEubGla1/genomic_data/pacbio/ - trio: '' - vglId: mEubGla1 - vgp_phase: phase2 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_900496995.4 + status: 2 + url: '#' + vglId: aHylSar1 + vgp_phase: phase3 +- asm: '#' class: Aves,birds - common_name: golden eagle - family: Accipitridae - hub: others - order: Falconiformes - scientific_name: Aquila chrysaetos - status: 8-NCBI - taxon_id: '8962' + common_name: blue jay + family: Corvidae + hub: vgl + order: Passeriformes + scientific_name: Cyanocitta cristata + status: 1-DNA_isolation + taxon_id: '28727' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Aquila_chrysaetos/bAquChr1/genomic_data/10x/ + status: 4 + url: '#' BN: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Aquila_chrysaetos/bAquChr1/genomic_data/bionano/ + status: 0 + url: '#' HiC: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Aquila_chrysaetos/bAquChr1/genomic_data/dovetail/ + status: 0 + url: '#' Ilm: status: 4 url: '#' @@ -3698,30 +3696,29 @@ toc: status: 4 url: '#' PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Aquila_chrysaetos/bAquChr1/genomic_data/pacbio/ - trio: '' - vglId: bAquChr1 - vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_901765095.2 - class: Amphibia,amphibians - common_name: tiny Cayenne caecilian - family: Siphonopidae + status: 0 + url: '#' + vglId: bCyaCri2 + vgp_phase: phase4 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_017639675.1 + class: Actinopterygii,Bony fishes + common_name: '' + family: Galaxiidae hub: others - order: Gymnophiona - scientific_name: Microcaecilia unicolor + order: Galaxiiformes + scientific_name: Aplochiton taeniatus status: 8-NCBI - taxon_id: '1415580' + taxon_id: '946358' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Microcaecilia_unicolor/aMicUni1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Aplochiton_taeniatus/fAplTae1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Microcaecilia_unicolor/aMicUni1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Aplochiton_taeniatus/fAplTae1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Microcaecilia_unicolor/aMicUni1/genomic_data/dovetail/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Aplochiton_taeniatus/fAplTae1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -3730,29 +3727,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Microcaecilia_unicolor/aMicUni1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Aplochiton_taeniatus/fAplTae1/genomic_data/pacbio/ trio: '' - vglId: aMicUni1 + vglId: fAplTae1 vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_015220715.1 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_013358815.1 class: Actinopterygii,Bony fishes - common_name: red-bellied piranha - family: Serrasalmidae + common_name: electric eel + family: Gymnotidae hub: others - order: Characiformes - scientific_name: Pygocentrus nattereri + order: Gymnotiformes + scientific_name: Electrophorus electricus status: 8-NCBI - taxon_id: '42514' + taxon_id: '8005' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pygocentrus_nattereri/fPygNat1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Electrophorus_electricus/fEleEle1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pygocentrus_nattereri/fPygNat1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Electrophorus_electricus/fEleEle1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pygocentrus_nattereri/fPygNat1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Electrophorus_electricus/fEleEle1/genomic_data/hic/ Ilm: status: 4 url: '#' @@ -3761,60 +3758,28 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pygocentrus_nattereri/fPygNat1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Electrophorus_electricus/fEleEle1/genomic_data/pacbio/ trio: '' - vglId: fPygNat1 + vglId: fEleEle1 vgp_phase: phase1 -- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Vidua_chalybeata/bVidCha1/assembly_vgp_standard_1.5/ - class: Aves,birds - common_name: village indigobird - family: Estrildidae - hub: vgl - order: Passeriformes - scientific_name: Vidua chalybeata - status: 5-asm_done - taxon_id: '81927' - techs: - 10X: - status: 4 - url: '#' - BN: - status: 4 - url: '#' - HiC: - link: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Vidua_chalybeata/bVidCha2/genomic_data/arima/ - status: 1 - url: '#' - Ilm: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Vidua_chalybeata/bVidCha1/genomic_data/illumina/ - ONT: - status: 4 - url: '#' - PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Vidua_chalybeata/bVidCha1/genomic_data/pacbio/ - trio: '' - vglId: bVidCha1 - vgp_phase: phase3 - asm: '#' class: Aves,birds - common_name: Eastern phoebe - family: Tyrannidae + common_name: Kauai elepaio + family: Monarchidae hub: vgl order: Passeriformes - scientific_name: Sayornis phoebe - status: 0-data_queued - taxon_id: '56315' + scientific_name: Chasiempis sclateri + status: 2-data_progress + taxon_id: '1576535' techs: 10X: status: 4 url: '#' BN: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Chasiempis_sclateri/bChaScl1/genomic_data/bionano/ HiC: - status: 0 + status: 3 url: '#' Ilm: status: 4 @@ -3825,58 +3790,59 @@ toc: PB: status: 0 url: '#' - vglId: bSayPho1 + trio: '' + vglId: bChaScl1 vgp_phase: phase2 -- asm: '#' +- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Danio_rerio/fDreSAT1/assembly_curated/ class: Actinopterygii,Bony fishes - common_name: barbel - family: Cyprinidae + common_name: zebrafish + family: Danionidae hub: others order: Cypriniformes - scientific_name: Barbus barbus - status: 2-data_progress - taxon_id: '40830' + scientific_name: Danio rerio + status: 7-asm_curated + taxon_id: '7955' techs: 10X: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Danio_rerio/fDreSAT1/genomic_data/10x/ BN: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Danio_rerio/fDreSAT1/genomic_data/bionano/ HiC: - status: 0 + status: 4 url: '#' Ilm: - status: 0 + status: 4 url: '#' ONT: - status: 0 + status: 4 url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Barbus_barbus/fBarBab1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Danio_rerio/fDreSAT1/genomic_data/pacbio/ trio: '' - vglId: fBarBab1 - vgp_phase: phase2 -- asm: '#' - class: Reptilia,reptiles - common_name: Gharial - family: Gavialidae - hub: vgl - order: Crocodylia - scientific_name: Gavialis gangeticus - status: 2-data_progress - taxon_id: '94835' + vglId: fDreSAT1 + vgp_phase: phase1 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_900496995.4 + class: Aves,birds + common_name: golden eagle + family: Accipitridae + hub: others + order: Falconiformes + scientific_name: Aquila chrysaetos + status: 8-NCBI + taxon_id: '8962' techs: 10X: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Aquila_chrysaetos/bAquChr1/genomic_data/10x/ BN: - status: 2 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Aquila_chrysaetos/bAquChr1/genomic_data/bionano/ HiC: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Aquila_chrysaetos/bAquChr1/genomic_data/dovetail/ Ilm: status: 4 url: '#' @@ -3884,60 +3850,61 @@ toc: status: 4 url: '#' PB: - status: 0 - url: '#' - vglId: rGavGan2 + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Aquila_chrysaetos/bAquChr1/genomic_data/pacbio/ + trio: '' + vglId: bAquChr1 vgp_phase: phase1 -- asm: '#' - class: Aves,birds - common_name: lesser rhea - family: Rheidae +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_015220745.1 + class: Actinopterygii,Bony fishes + common_name: honeycomb rockfish + family: Sebastidae hub: vgl - order: Rheiformes - scientific_name: Rhea pennata - status: 2-data_progress - taxon_id: '8795' + order: Perciformes + scientific_name: Sebastes umbrosus + status: 8-NCBI + taxon_id: '72105' techs: 10X: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sebastes_umbrosus/fSebUmb1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rhea_pennata/bPtePen1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sebastes_umbrosus/fSebUmb1/genomic_data/bionano/ HiC: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sebastes_umbrosus/fSebUmb1/genomic_data/hic/ Ilm: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sebastes_umbrosus/fSebUmb1/genomic_data/illumina/ ONT: status: 4 url: '#' PB: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sebastes_umbrosus/fSebUmb1/genomic_data/pacbio/ trio: '' - vglId: bPtePen1 + vglId: fSebUmb1 vgp_phase: phase2 -- asm: '#' - class: Aves,birds - common_name: Savannah sparrow - family: Passerellidae +- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lemur_catta/mLemCat1/assembly_curated/ + class: Mammalia,mammals + common_name: Ring-tailed lemur + family: Lemuridae hub: vgl - order: Passeriformes - scientific_name: Passerculus sandwichensis - status: 2-data_progress - taxon_id: '161624' + order: Lemuriformes + scientific_name: Lemur catta + status: 7-asm_curated + taxon_id: '9447' techs: 10X: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lemur_catta/mLemCat1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Passerculus_sandwichensis/bPasSan1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lemur_catta/mLemCat1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Passerculus_sandwichensis/bPasSan1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lemur_catta/mLemCat1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -3945,20 +3912,20 @@ toc: status: 4 url: '#' PB: - status: 2 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lemur_catta/mLemCat1/genomic_data/pacbio/ trio: '' - vglId: bPasSan1 - vgp_phase: phase3 + vglId: mLemCat1 + vgp_phase: phase1 - asm: '#' - class: Aves,birds - common_name: grey catbird - family: Mimidae + class: Reptilia,reptiles + common_name: Atlantic ridley + family: Cheloniidae hub: vgl - order: Passeriformes - scientific_name: Dumetella carolinensis + order: Testudines + scientific_name: Lepidochelys kempii status: 0-data_queued - taxon_id: '111981' + taxon_id: '8472' techs: 10X: status: 4 @@ -3978,27 +3945,27 @@ toc: PB: status: 0 url: '#' - vglId: bDumCar1 - vgp_phase: phase2 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_015227805.1 + vglId: rLepKem1 + vgp_phase: phase3 +- asm: '#' class: Aves,birds - common_name: Barn swallow - family: Hirundinidae + common_name: tufted titmouse + family: Paridae hub: vgl order: Passeriformes - scientific_name: Hirundo rustica - status: 8-NCBI - taxon_id: '43150' + scientific_name: Baeolophus bicolor + status: 1-DNA_isolation + taxon_id: '88114' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Hirundo_rustica/bHirRus1/genomic_data/10x/ + status: 4 + url: '#' BN: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Hirundo_rustica/bHirRus1/genomic_data/bionano/ + status: 0 + url: '#' HiC: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Hirundo_rustica/bHirRus1/genomic_data/arima/ + status: 0 + url: '#' Ilm: status: 4 url: '#' @@ -4006,10 +3973,9 @@ toc: status: 4 url: '#' PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Hirundo_rustica/bHirRus1/genomic_data/pacbio/ - trio: '' - vglId: bHirRus1 + status: 0 + url: '#' + vglId: bBaeBic1 vgp_phase: phase2 - asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pangasianodon_hypophthalmus/fPanHyp1/assembly_vgp_standard_2.1/ class: Actinopterygii,Bony fishes @@ -4042,25 +4008,25 @@ toc: trio: '' vglId: fPanHyp1 vgp_phase: phase2 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_900880675.2 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_009762535.1 class: Actinopterygii,Bony fishes - common_name: gilthead seabream - family: Sparidae - hub: others - order: Spariformes - scientific_name: Sparus aurata + common_name: New Zealand spotty + family: Labridae + hub: vgl + order: Perciformes + scientific_name: Notolabrus celidotus status: 8-NCBI - taxon_id: '8175' + taxon_id: '1203425' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sparus_aurata/fSpaAur1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Notolabrus_celidotus/fNotCel1/genomic_data/10x/ BN: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Notolabrus_celidotus/fNotCel1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sparus_aurata/fSpaAur1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Notolabrus_celidotus/fNotCel1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -4069,59 +4035,28 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sparus_aurata/fSpaAur1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Notolabrus_celidotus/fNotCel1/genomic_data/pacbio/ trio: '' - vglId: fSpaAur1 + vglId: fNotCel1 vgp_phase: phase1 -- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Haemorhous_mexicanus/bHaeMex1/assembly_vgp_standard_2.0/ +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_009819775.1 class: Aves,birds - common_name: house finch - family: Fringillidae + common_name: American flamingo + family: Phoenicopteridae hub: vgl - order: Passeriformes - scientific_name: Haemorhous mexicanus - status: 5-asm_done - taxon_id: '30427' + order: Phoenicopteriformes + scientific_name: Phoenicopterus ruber + status: 8-NCBI + taxon_id: '9217' techs: 10X: - status: 4 - url: '#' - BN: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Haemorhous_mexicanus/bHaeMex1/genomic_data/bionano/ - HiC: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Haemorhous_mexicanus/bHaeMex1/genomic_data/arima/ - Ilm: - status: 4 - url: '#' - ONT: - status: 4 - url: '#' - PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Haemorhous_mexicanus/bHaeMex1/genomic_data/pacbio/ - trio: '' - vglId: bHaeMex1 - vgp_phase: phase2 -- asm: '#' - class: Aves,birds - common_name: kagu - family: Rhynochetidae - hub: vgl - order: Gruiformes - scientific_name: Rhynochetos jubatus - status: 2-data_progress - taxon_id: '54386' - techs: - 10X: - status: 4 url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rhynochetos_jubatus/bRhyJub1/genomic_data/bionano/ + url: '#' HiC: - status: 0 + status: 1 url: '#' Ilm: status: 4 @@ -4130,30 +4065,30 @@ toc: status: 4 url: '#' PB: - status: 0 + status: 1 url: '#' trio: '' - vglId: bRhyJub1 + vglId: bPhoRub1 vgp_phase: phase1 -- asm: '#' - class: Reptilia,reptiles - common_name: Florida worm lizard - family: Rhineuridae +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_016695395.2 + class: Mammalia,mammals + common_name: human + family: Hominidae hub: vgl - order: Squamata - scientific_name: Rhineura floridana - status: 2-data_progress - taxon_id: '261503' + order: Primates + scientific_name: Homo sapiens + status: 8-NCBI + taxon_id: '9606' techs: 10X: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Homo_sapiens/mHomSap3/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rhineura_floridana/rRhiFlo1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Homo_sapiens/mHomSap3/genomic_data/bionano/ HiC: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Homo_sapiens/mHomSap3/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -4161,30 +4096,30 @@ toc: status: 4 url: '#' PB: - status: 0 - url: '#' - trio: '' - vglId: rRhiFlo1 + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Homo_sapiens/mHomSap3/genomic_data/pacbio/ + trio: mHomSap1/mHomSap2 + vglId: mHomSap3 vgp_phase: phase1 -- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lemur_catta/mLemCat1/assembly_curated/ - class: Mammalia,mammals - common_name: Ring-tailed lemur - family: Lemuridae - hub: vgl - order: Lemuriformes - scientific_name: Lemur catta - status: 7-asm_curated - taxon_id: '9447' +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_902362185.1 + class: Actinopterygii,Bony fishes + common_name: milkfish + family: Chanidae + hub: others + order: Gonorynchiformes + scientific_name: Chanos chanos + status: 8-NCBI + taxon_id: '29144' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lemur_catta/mLemCat1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Chanos_chanos/fChaCha1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lemur_catta/mLemCat1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Chanos_chanos/fChaCha1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lemur_catta/mLemCat1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Chanos_chanos/fChaCha1/genomic_data/dovetail/ Ilm: status: 4 url: '#' @@ -4193,9 +4128,9 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lemur_catta/mLemCat1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Chanos_chanos/fChaCha1/genomic_data/pacbio/ trio: '' - vglId: mLemCat1 + vglId: fChaCha1 vgp_phase: phase1 - asm: '#' class: Aves,birds @@ -4227,25 +4162,25 @@ toc: url: '#' vglId: bPodCri1 vgp_phase: phase1 -- asm: '#' - class: Aves,birds - common_name: black-legged kittiwake - family: Laridae - hub: vgl - order: Charadriiformes - scientific_name: Rissa tridactyla - status: 2-data_progress - taxon_id: '75485' +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_902150065.1 + class: Actinopterygii,Bony fishes + common_name: pinecone soldierfish + family: Holocentridae + hub: others + order: Holocentriformes + scientific_name: Myripristis murdjan + status: 8-NCBI + taxon_id: '586833' techs: 10X: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Myripristis_murdjan/fMyrMur1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rissa_tridactyla/bRisTri1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Myripristis_murdjan/fMyrMur1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rissa_tridactyla/bRisTri1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Myripristis_murdjan/fMyrMur1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -4253,30 +4188,30 @@ toc: status: 4 url: '#' PB: - status: 2 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Myripristis_murdjan/fMyrMur1/genomic_data/pacbio/ trio: '' - vglId: bRisTri1 - vgp_phase: phase2 -- asm: '#' - class: Chondrichthyes,cartilaginous fishes - common_name: Yucatan manta ray - family: Mobulidae + vglId: fMyrMur1 + vgp_phase: phase1 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_008692025.1 + class: Mammalia,mammals + common_name: vaquita + family: Phocoenidae hub: vgl - order: Myliobatiformes - scientific_name: Manta giorna - status: 2-data_progress - taxon_id: '000000' + order: Artiodactyla + scientific_name: Phocoena sinus + status: 8-NCBI + taxon_id: '42100' techs: 10X: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Phocoena_sinus/mPhoSin1/genomic_data/10x/ BN: status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Phocoena_sinus/mPhoSin1/genomic_data/bionano/ HiC: status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Phocoena_sinus/mPhoSin1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -4284,29 +4219,30 @@ toc: status: 4 url: '#' PB: - status: 2 - url: '#' - vglId: sManGio1 - vgp_phase: phase2 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_905171765.1 - class: Amphibia,amphibians - common_name: common toad - family: Bufonidae - hub: others - order: Anura - scientific_name: Bufo bufo + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Phocoena_sinus/mPhoSin1/genomic_data/pacbio/ + trio: '' + vglId: mPhoSin1 + vgp_phase: phase1 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_004126475.2 + class: Mammalia,mammals + common_name: pale spear-nosed bat + family: Phyllostomidae + hub: vgl + order: Chiroptera + scientific_name: Phyllostomus discolor status: 8-NCBI - taxon_id: '8384' + taxon_id: '89673' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Bufo_bufo/aBufBuf1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Phyllostomus_discolor/mPhyDis1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Bufo_bufo/aBufBuf1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Phyllostomus_discolor/mPhyDis1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Bufo_bufo/aBufBuf1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Phyllostomus_discolor/mPhyDis1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -4315,29 +4251,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Bufo_bufo/aBufBuf1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Phyllostomus_discolor/mPhyDis1/genomic_data/pacbio/ trio: '' - vglId: aBufBuf1 + vglId: mPhyDis1 vgp_phase: phase1 -- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Nomonyx_dominicus/bNomDom1/assembly_vgp_standard_1.5/ - class: Aves,birds - common_name: Masked duck - family: Anatidae +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_011100535.2 + class: Mammalia,mammals + common_name: white-tufted-ear marmoset + family: Cebidae hub: vgl - order: Anseriformes - scientific_name: Nomonyx dominicus - status: 5-asm_done - taxon_id: '555276' + order: Primates + scientific_name: Callithrix jacchus + status: 8-NCBI + taxon_id: '9483' techs: 10X: - status: 4 + status: 1 url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Nomonyx_dominicus/bNomDom1/genomic_data/bionano/ + url: '#' HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Nomonyx_dominicus/bNomDom1/genomic_data/arima/ + url: '#' Ilm: status: 4 url: '#' @@ -4346,29 +4282,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Nomonyx_dominicus/bNomDom1/genomic_data/pacbio/ - trio: '' - vglId: bNomDom1 - vgp_phase: phase3 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_004027225.2 + url: '#' + trio: mCalJac2/mCalJac3 + vglId: mCalJac1 + vgp_phase: phase1 +- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Hemiprocne_comata/bHemCom1/assembly_curated/ class: Aves,birds - common_name: Kakapo - family: Psittacidae - hub: others - order: Psittaciformes - scientific_name: Strigops habroptilus - status: 8-NCBI - taxon_id: '57251' + common_name: whiskered treeswift + family: Apodidae + hub: vgl + order: Apodiformes + scientific_name: Hemiprocne comata + status: 7-asm_curated + taxon_id: '243314' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Strigops_habroptilus/bStrHab1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Hemiprocne_comata/bHemCom1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Strigops_habroptilus/bStrHab1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Hemiprocne_comata/bHemCom1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Strigops_habroptilus/bStrHab1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Hemiprocne_comata/bHemCom1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -4377,29 +4313,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Strigops_habroptilus/bStrHab1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Hemiprocne_comata/bHemCom1/genomic_data/pacbio/ trio: '' - vglId: bStrHab1 + vglId: bHemCom1 vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_015220235.1 - class: Mammalia,mammals - common_name: southern two-toed sloth - family: Megalonychidae +- asm: '#' + class: Actinopterygii,Bony fishes + common_name: midwater eelpout + family: Zoarcidae hub: vgl - order: Folivora - scientific_name: Choloepus didactylus - status: 8-NCBI - taxon_id: '27675' + order: Perciformes + scientific_name: Melanostigma pammelas + status: 2-data_progress + taxon_id: '557412' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Choloepus_didactylus/mChoDid1/genomic_data/10x/ + status: 4 + url: '#' BN: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Choloepus_didactylus/mChoDid1/genomic_data/bionano/ + status: 0 + url: '#' HiC: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Choloepus_didactylus/mChoDid1/genomic_data/arima/ + status: 0 + url: '#' Ilm: status: 4 url: '#' @@ -4408,29 +4344,28 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Choloepus_didactylus/mChoDid1/genomic_data/pacbio/ - trio: '' - vglId: mChoDid1 - vgp_phase: phase1 -- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Falco_peregrinus/bFalPer1/assembly_vgp_standard_2.0/ - class: Aves,birds - common_name: peregrine falcon - family: Falconidae + url: '#' + vglId: fMelPam1 + vgp_phase: phase2 +- asm: '#' + class: Chondrichthyes,cartilaginous fishes + common_name: sharpnose sevengill shark + family: Hexanchidae hub: vgl - order: Falconiformes - scientific_name: Falco peregrinus - status: 6-asm_curation - taxon_id: '8954' + order: Hexanchiformes + scientific_name: Heptranchias perlo + status: 2-data_progress + taxon_id: '212740' techs: 10X: status: 4 url: '#' BN: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Falco_peregrinus/bFalPer1/genomic_data/bionano/ + status: 2 + url: '#' HiC: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Falco_peregrinus/bFalPer1/genomic_data/arima/ + status: 0 + url: '#' Ilm: status: 4 url: '#' @@ -4438,30 +4373,29 @@ toc: status: 4 url: '#' PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Falco_peregrinus/bFalPer1/genomic_data/pacbio/ - trio: '' - vglId: bFalPer1 - vgp_phase: phase4 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_014839835.1 + status: 0 + url: '#' + vglId: sHepPer1 + vgp_phase: phase1 +- asm: '#' class: Aves,birds - common_name: Downy woodpecker - family: Picidae - hub: others - order: Piciformes - scientific_name: Dryobates pubescens - status: 8-NCBI - taxon_id: '118200' + common_name: Black-capped chickadee + family: Paridae + hub: vgl + order: Passeriformes + scientific_name: Poecile atricapillus + status: 1-DNA_isolation + taxon_id: '48891' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dryobates_pubescens/bDryPub1/genomic_data/10x/ + status: 4 + url: '#' BN: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dryobates_pubescens/bDryPub1/genomic_data/bionano/ + status: 0 + url: '#' HiC: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dryobates_pubescens/bDryPub1/genomic_data/arima/ + status: 0 + url: '#' Ilm: status: 4 url: '#' @@ -4469,30 +4403,29 @@ toc: status: 4 url: '#' PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dryobates_pubescens/bDryPub1/genomic_data/pacbio/ - trio: '' - vglId: bDryPub1 - vgp_phase: phase2 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_905171775.1 - class: Amphibia,amphibians - common_name: common frog - family: Ranidae - hub: others - order: Anura - scientific_name: Rana temporaria - status: 8-NCBI - taxon_id: '8407' + status: 0 + url: '#' + vglId: bPoeAtr1 + vgp_phase: phase3 +- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Branta_leucopsis/bBraLeu1/assembly_vgp_standard_1.5/ + class: Aves,birds + common_name: barnacle goose + family: Anatidae + hub: vgl + order: Anseriformes + scientific_name: Branta leucopsis + status: 5-asm_done + taxon_id: '184711' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rana_temporaria/aRanTem1/genomic_data/10x/ + status: 4 + url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rana_temporaria/aRanTem1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Branta_leucopsis/bBraLeu1/genomic_data/bionano/ HiC: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rana_temporaria/aRanTem1/genomic_data/dovetail/ + status: 4 + url: '#' Ilm: status: 4 url: '#' @@ -4501,29 +4434,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rana_temporaria/aRanTem1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Branta_leucopsis/bBraLeu1/genomic_data/pacbio/ trio: '' - vglId: aRanTem1 - vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_009819595.1 - class: Aves,birds - common_name: carmine bee-eater - family: Meropidae + vglId: bBraLeu1 + vgp_phase: phase3 +- asm: '#' + class: Chondrichthyes,cartilaginous fishes + common_name: Atlantic stingray + family: Dasyatidae hub: vgl - order: Coraciiformes - scientific_name: Merops nubicus - status: 8-NCBI - taxon_id: '57421' + order: Myliobatiformes + scientific_name: Hypanus sabinus + status: 1-DNA_isolation + taxon_id: '79690' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Merops_nubicus/bMerNub1/genomic_data/10x/ + status: 4 + url: '#' BN: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Merops_nubicus/bMerNub1/genomic_data/bionano/ + status: 0 + url: '#' HiC: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Merops_nubicus/bMerNub1/genomic_data/arima/ + status: 0 + url: '#' Ilm: status: 4 url: '#' @@ -4531,11 +4464,10 @@ toc: status: 4 url: '#' PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Merops_nubicus/bMerNub1/genomic_data/pacbio/ - trio: '' - vglId: bMerNub1 - vgp_phase: phase1 + status: 0 + url: '#' + vglId: sHypSab1 + vgp_phase: phase2 - asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Tautogolabrus_adspersus/fTauAds1/assembly_curated/ class: Actinopterygii,Bony fishes common_name: cunner @@ -4567,25 +4499,25 @@ toc: trio: '' vglId: fTauAds1 vgp_phase: phase3 -- asm: '#' - class: Reptilia,reptiles - common_name: Atlantic ridley - family: Cheloniidae +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_901001165.2 + class: Actinopterygii,Bony fishes + common_name: river trout + family: Salmonidae hub: vgl - order: Testudines - scientific_name: Lepidochelys kempii - status: 0-data_queued - taxon_id: '8472' + order: Salmoniformes + scientific_name: Salmo trutta + status: 8-NCBI + taxon_id: '8032' techs: 10X: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Salmo_trutta/fSalTru1/genomic_data/10x/ BN: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Salmo_trutta/fSalTru1/genomic_data/bionano/ HiC: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Salmo_trutta/fSalTru1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -4593,29 +4525,30 @@ toc: status: 4 url: '#' PB: - status: 0 - url: '#' - vglId: rLepKem1 - vgp_phase: phase3 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_009762535.1 + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Salmo_trutta/fSalTru1/genomic_data/pacbio/ + trio: '' + vglId: fSalTru1 + vgp_phase: phase1 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_009819705.1 class: Actinopterygii,Bony fishes - common_name: New Zealand spotty - family: Labridae + common_name: Atlantic halibut + family: Pleuronectidae hub: vgl - order: Perciformes - scientific_name: Notolabrus celidotus + order: Pleuronectiformes + scientific_name: Hippoglossus hippoglossus status: 8-NCBI - taxon_id: '1203425' + taxon_id: '8267' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Notolabrus_celidotus/fNotCel1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Hippoglossus_hippoglossus/fHipHip1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Notolabrus_celidotus/fNotCel1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Hippoglossus_hippoglossus/fHipHip1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Notolabrus_celidotus/fNotCel1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Hippoglossus_hippoglossus/fHipHip1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -4624,25 +4557,25 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Notolabrus_celidotus/fNotCel1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Hippoglossus_hippoglossus/fHipHip1/genomic_data/pacbio/ trio: '' - vglId: fNotCel1 + vglId: fHipHip1 vgp_phase: phase1 - asm: '#' - class: Chondrichthyes,cartilaginous fishes - common_name: Atlantic stingray - family: Dasyatidae + class: Mammalia,mammals + common_name: Bolivian squirrel monkey + family: Cebidae hub: vgl - order: Myliobatiformes - scientific_name: Hypanus sabinus - status: 1-DNA_isolation - taxon_id: '79690' + order: Primates + scientific_name: Saimiri boliviensis + status: 2-data_progress + taxon_id: '27679' techs: 10X: status: 4 url: '#' BN: - status: 0 + status: 2 url: '#' HiC: status: 0 @@ -4656,27 +4589,27 @@ toc: PB: status: 0 url: '#' - vglId: sHypSab1 - vgp_phase: phase2 + vglId: mSaiBol1 + vgp_phase: phase3 - asm: '#' class: Aves,birds - common_name: Whooping crane - family: Gruidae + common_name: great cormorant + family: Phalacrocoracidae hub: vgl - order: Gruiformes - scientific_name: Grus americana - status: 4-asm_progress - taxon_id: '9117' + order: Pelecaniformes + scientific_name: Phalacrocorax carbo + status: 2-data_progress + taxon_id: '9209' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Grus_americana/bGruAme1/genomic_data/10x/ + status: 4 + url: '#' BN: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Grus_americana/bGruAme1/genomic_data/bionano/ + status: 0 + url: '#' HiC: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Grus_americana/bGruAme1/genomic_data/arima/ + status: 0 + url: '#' Ilm: status: 4 url: '#' @@ -4684,30 +4617,29 @@ toc: status: 4 url: '#' PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Grus_americana/bGruAme1/genomic_data/pacbio/ - trio: bGruAme2/bGruAme3 - vglId: bGruAme1 - vgp_phase: phase3 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_007364275.1 - class: Actinopterygii,Bony fishes - common_name: flier cichlid - family: Cichlidae + status: 0 + url: '#' + vglId: bPhaCar1 + vgp_phase: phase1 +- asm: '#' + class: Reptilia,reptiles + common_name: Gharial + family: Gavialidae hub: vgl - order: Cichliformes - scientific_name: Archocentrus centrarchus - status: 8-NCBI - taxon_id: '63155' + order: Crocodylia + scientific_name: Gavialis gangeticus + status: 2-data_progress + taxon_id: '94835' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Archocentrus_centrarchus/fArcCen1/genomic_data/10x/ + status: 4 + url: '#' BN: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Archocentrus_centrarchus/fArcCen1/genomic_data/bionano/ + status: 2 + url: '#' HiC: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Archocentrus_centrarchus/fArcCen1/genomic_data/phase/ + status: 0 + url: '#' Ilm: status: 4 url: '#' @@ -4715,30 +4647,29 @@ toc: status: 4 url: '#' PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Archocentrus_centrarchus/fArcCen1/genomic_data/pacbio/ - trio: '' - vglId: fArcCen1 + status: 0 + url: '#' + vglId: rGavGan2 vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_901001165.2 - class: Actinopterygii,Bony fishes - common_name: river trout - family: Salmonidae +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_013368605.1 + class: Aves,birds + common_name: great potoo + family: Nyctibiidae hub: vgl - order: Salmoniformes - scientific_name: Salmo trutta + order: Caprimulgiformes + scientific_name: Nyctibius grandis status: 8-NCBI - taxon_id: '8032' + taxon_id: '48427' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Salmo_trutta/fSalTru1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Nyctibius_grandis/bNycGra1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Salmo_trutta/fSalTru1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Nyctibius_grandis/bNycGra1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Salmo_trutta/fSalTru1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Nyctibius_grandis/bNycGra1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -4747,29 +4678,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Salmo_trutta/fSalTru1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Nyctibius_grandis/bNycGra1/genomic_data/pacbio/ trio: '' - vglId: fSalTru1 + vglId: bNycGra1 vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_902148855.1 - class: Actinopterygii,Bony fishes - common_name: orbiculate cardinalfish - family: Apogonidae - hub: others - order: Kurtiformes - scientific_name: Sphaeramia orbicularis - status: 8-NCBI - taxon_id: '375764' +- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Spatula_cyanoptera/bSpaCya1/assembly_vgp_standard_1.5/ + class: Aves,birds + common_name: cinnamon teal + family: Anatidae + hub: vgl + order: Anseriformes + scientific_name: Spatula cyanoptera + status: 5-asm_done + taxon_id: '75840' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sphaeramia_orbicularis/fSphaOr1/genomic_data/10x/ + status: 4 + url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sphaeramia_orbicularis/fSphaOr1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Spatula_cyanoptera/bSpaCya1/genomic_data/bionano/ HiC: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sphaeramia_orbicularis/fSphaOr1/genomic_data/arima/ + status: 4 + url: '#' Ilm: status: 4 url: '#' @@ -4778,60 +4709,60 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sphaeramia_orbicularis/fSphaOr1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Spatula_cyanoptera/bSpaCya1/genomic_data/pacbio/ trio: '' - vglId: fSphaOr1 - vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_910589615.1 - class: Actinopterygii,Bony fishes - common_name: longspined bullhead - family: Cottidae - hub: others - order: Perciformes - scientific_name: Taurulus bubalis - status: 8-NCBI - taxon_id: '61643' + vglId: bSpaCya1 + vgp_phase: phase3 +- asm: '#' + class: Aves,birds + common_name: song sparrow + family: Passerellidae + hub: vgl + order: Passeriformes + scientific_name: Melospiza melodia + status: 2-data_progress + taxon_id: '44397' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Taurulus_bubalis/fTauBub2/genomic_data/10x/ + status: 4 + url: '#' BN: status: 1 url: '#' HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Taurulus_bubalis/fTauBub2/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Melospiza_melodia/bMelMel1/genomic_data/arima/ Ilm: - status: 1 + status: 4 url: '#' ONT: - status: 1 + status: 4 url: '#' PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Taurulus_bubalis/fTauBub2/genomic_data/pacbio/ + status: 2 + url: '#' trio: '' - vglId: fTauBub2 - vgp_phase: phase2 + vglId: bMelMel1 + vgp_phase: phase3 - asm: '#' - class: Actinopteri,Bony fishes - common_name: banded killifish - family: Fundulidae + class: Aves,birds + common_name: grey catbird + family: Mimidae hub: vgl - order: Cyprinodontiformes - scientific_name: Fundulus diaphanus - status: 2-data_progress - taxon_id: '54267' + order: Passeriformes + scientific_name: Dumetella carolinensis + status: 0-data_queued + taxon_id: '111981' techs: 10X: status: 4 url: '#' BN: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Fundulus_diaphanus/fFunDia1/genomic_data/bionano/ + status: 0 + url: '#' HiC: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Fundulus_diaphanus/fFunDia1/genomic_data/arima/ + status: 0 + url: '#' Ilm: status: 4 url: '#' @@ -4841,28 +4772,27 @@ toc: PB: status: 0 url: '#' - trio: '' - vglId: fFunDia1 + vglId: bDumCar1 vgp_phase: phase2 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_009650955.1 +- asm: '#' class: Aves,birds - common_name: New Caledonian crow - family: Corvidae + common_name: Micronesian kingfisher + family: Alcedinidae hub: vgl - order: Passeriformes - scientific_name: Corvus moneduloides - status: 8-NCBI - taxon_id: '1196302' + order: Coraciiformes + scientific_name: Todiramphus cinnamominus + status: 2-data_progress + taxon_id: '1006542' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Corvus_moneduloides/bCorMon1/genomic_data/10x/ + status: 4 + url: '#' BN: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Corvus_moneduloides/bCorMon1/genomic_data/bionano/ + status: 2 + url: '#' HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Corvus_moneduloides/bCorMon1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Todiramphus_cinnamominus/bTodCin1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -4870,62 +4800,60 @@ toc: status: 4 url: '#' PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Corvus_moneduloides/bCorMon1/genomic_data/pacbio/ + status: 0 + url: '#' trio: '' - vglId: bCorMon1 + vglId: bTodCin1 vgp_phase: phase2 -- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Erethizon_dorsatum/mEreDor1/assembly_vgp_standard_1.7/ +- asm: '#' class: Mammalia,mammals - common_name: North American porcupine - family: Erethizontidae + common_name: American pika + family: Ochotonidae hub: vgl - order: Rodentia - scientific_name: Erethizon dorsatum - status: 6-asm_curation - taxon_id: '34844' + order: Lagomorpha + scientific_name: Ochotona princeps + status: 2-data_progress + taxon_id: '9978' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Erethizon_dorsatum/mEreDor1/genomic_data/10x/ - BN: status: 4 url: '#' + BN: + status: 0 + url: '#' HiC: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Erethizon_dorsatum/mEreDor1/genomic_data/arima/ + status: 0 + url: '#' Ilm: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Erethizon_dorsatum/mEreDor1/genomic_data/illumina/ + status: 4 + url: '#' ONT: status: 4 url: '#' PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Erethizon_dorsatum/mEreDor1/genomic_data/pacbio/ - trio: '' - vglId: mEreDor1 + status: 2 + url: '#' + vglId: mOchPri1 vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_900634415.1 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_009769545.1 class: Actinopterygii,Bony fishes - common_name: channel bull blenny - family: Bovichtidae - hub: others - order: Perciformes - scientific_name: Cottoperca gobio + common_name: lumpfish + family: Cyclopteridae + hub: vgl + order: Scorpaeniformes + scientific_name: Cyclopterus lumpus status: 8-NCBI - taxon_id: '56716' + taxon_id: '8103' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cottoperca_gobio/fCotGob3/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cyclopterus_lumpus/fCycLum1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cottoperca_gobio/fCotGob3/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cyclopterus_lumpus/fCycLum1/genomic_data/bionano/ HiC: - link: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cottoperca_gobio/fCotGob2/genomic_data/arima/ status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cyclopterus_lumpus/fCycLum1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -4934,29 +4862,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cottoperca_gobio/fCotGob3/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cyclopterus_lumpus/fCycLum1/genomic_data/pacbio/ trio: '' - vglId: fCotGob3 + vglId: fCycLum1 vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_015220075.1 +- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Falco_cherrug/bFalChe1/assembly_vgp_standard_2.0/ class: Aves,birds - common_name: gyrfalcon + common_name: Saker falcon family: Falconidae hub: vgl order: Falconiformes - scientific_name: Falco rusticolus - status: 8-NCBI - taxon_id: '120794' + scientific_name: Falco cherrug + status: 6-asm_curation + taxon_id: '345164' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Falco_rusticolus/bFalRus1/genomic_data/10x/ + status: 4 + url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Falco_rusticolus/bFalRus1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Falco_cherrug/bFalChe1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Falco_rusticolus/bFalRus1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Falco_cherrug/bFalChe1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -4965,29 +4893,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Falco_rusticolus/bFalRus1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Falco_cherrug/bFalChe1/genomic_data/pacbio/ trio: '' - vglId: bFalRus1 - vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_004126475.2 - class: Mammalia,mammals - common_name: pale spear-nosed bat - family: Phyllostomidae + vglId: bFalChe1 + vgp_phase: phase4 +- asm: '#' + class: Aves,birds + common_name: Swift parrot + family: Psittacidae hub: vgl - order: Chiroptera - scientific_name: Phyllostomus discolor - status: 8-NCBI - taxon_id: '89673' + order: Psittaciformes + scientific_name: Lathamus discolor + status: 2-data_progress + taxon_id: '678569' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Phyllostomus_discolor/mPhyDis1/genomic_data/10x/ + status: 4 + url: '#' BN: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Phyllostomus_discolor/mPhyDis1/genomic_data/bionano/ + status: 2 + url: '#' HiC: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Phyllostomus_discolor/mPhyDis1/genomic_data/arima/ + status: 0 + url: '#' Ilm: status: 4 url: '#' @@ -4995,61 +4923,61 @@ toc: status: 4 url: '#' PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Phyllostomus_discolor/mPhyDis1/genomic_data/pacbio/ - trio: '' - vglId: mPhyDis1 - vgp_phase: phase1 -- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dendropsophus_ebraccatus/aDenEbr1/assembly_nhgri_trio_1.6/ - class: Amphibia,amphibians - common_name: hourglass treefrog - family: Hylidae - hub: vgl - order: Anura - scientific_name: Dendropsophus ebraccatus - status: 6-asm_curation - taxon_id: '150705' + status: 0 + url: '#' + vglId: bLatDis1 + vgp_phase: phase3 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_910589615.1 + class: Actinopterygii,Bony fishes + common_name: longspined bullhead + family: Cottidae + hub: others + order: Perciformes + scientific_name: Taurulus bubalis + status: 8-NCBI + taxon_id: '61643' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dendropsophus_ebraccatus/aDenEbr1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Taurulus_bubalis/fTauBub2/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dendropsophus_ebraccatus/aDenEbr1/genomic_data/bionano/ + url: '#' HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dendropsophus_ebraccatus/aDenEbr1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Taurulus_bubalis/fTauBub2/genomic_data/arima/ Ilm: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dendropsophus_ebraccatus/aDenEbr1/genomic_data/illumina/ + url: '#' ONT: - status: 4 + status: 1 url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dendropsophus_ebraccatus/aDenEbr1/genomic_data/pacbio/ - trio: aDenEbr4/aDenEbr5 - vglId: aDenEbr1 - vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_015852505.1 - class: Mammalia,mammals - common_name: Australian echidna - family: Tachyglossidae + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Taurulus_bubalis/fTauBub2/genomic_data/pacbio/ + trio: '' + vglId: fTauBub2 + vgp_phase: phase2 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_014839755.1 + class: Aves,birds + common_name: garden warbler + family: Sylviidae hub: vgl - order: Monotremata - scientific_name: Tachyglossus aculeatus + order: Passeriformes + scientific_name: Sylvia borin status: 8-NCBI - taxon_id: '9261' + taxon_id: '73324' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Tachyglossus_aculeatus/mTacAcu1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sylvia_borin/bSylBor1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Tachyglossus_aculeatus/mTacAcu1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sylvia_borin/bSylBor1/genomic_data/bionano/ HiC: + link: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sylvia_borin/bSylBor2/genomic_data/arima/ status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Tachyglossus_aculeatus/mTacAcu1/genomic_data/phase/ + url: '#' Ilm: status: 4 url: '#' @@ -5058,60 +4986,60 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Tachyglossus_aculeatus/mTacAcu1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sylvia_borin/bSylBor1/genomic_data/pacbio/ trio: '' - vglId: mTacAcu1 + vglId: bSylBor1 vgp_phase: phase2 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_902167405.1 - class: Actinopterygii,Bony fishes - common_name: Atlantic cod - family: Gadidae - hub: others - order: Gadiformes - scientific_name: Gadus morhua +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_017639515.1 + class: Chondrichthyes,cartilaginous fishes + common_name: great white shark + family: Alopiidae + hub: vgl + order: Lamniformes + scientific_name: Carcharodon carcharias status: 8-NCBI - taxon_id: '8049' + taxon_id: '13397' techs: 10X: status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Carcharodon_carcharias/sCarCar2/genomic_data/10x/ BN: status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Carcharodon_carcharias/sCarCar2/genomic_data/bionano/ HiC: status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Carcharodon_carcharias/sCarCar2/genomic_data/arima/ Ilm: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Carcharodon_carcharias/sCarCar2/genomic_data/illumina/ ONT: status: 4 url: '#' PB: status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Carcharodon_carcharias/sCarCar2/genomic_data/pacbio/ trio: '' - vglId: fGadMor1 + vglId: sCarCar2 vgp_phase: phase1 -- asm: '#' - class: Mammalia,mammals - common_name: nine-banded armadillo - family: Dasypodidae - hub: vgl - order: Cingulata - scientific_name: Dasypus novemcinctus - status: 2-data_progress - taxon_id: '9361' +- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lagopus_muta/bLagMut1/assembly_vgp_standard_2.0/ + class: Aves,birds + common_name: rock ptarmigan + family: Phasianidae + hub: others + order: Galliformes + scientific_name: Lagopus muta + status: 5-asm_done + taxon_id: '64668' techs: 10X: status: 4 url: '#' BN: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dasypus_novemcinctus/mDasNov1/genomic_data/bionano/ + status: 4 + url: '#' HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dasypus_novemcinctus/mDasNov1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lagopus_muta/bLagMut1/genomic_data/dovetail/ Ilm: status: 4 url: '#' @@ -5119,30 +5047,30 @@ toc: status: 4 url: '#' PB: - status: 2 - url: '#' - trio: '' - vglId: mDasNov1 - vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_009769625.2 - class: Aves,birds - common_name: mute swan - family: Anatidae - hub: vgl - order: Anseriformes - scientific_name: Cygnus olor - status: 8-NCBI - taxon_id: '8869' - techs: - 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cygnus_olor/bCygOlo1/genomic_data/10x/ - BN: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cygnus_olor/bCygOlo1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lagopus_muta/bLagMut1/genomic_data/pacbio/ + trio: '' + vglId: bLagMut1 + vgp_phase: phase3 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_900963305.2 + class: Actinopterygii,Bony fishes + common_name: live sharksucker + family: Echeneidae + hub: others + order: Carangiformes + scientific_name: Echeneis naucrates + status: 8-NCBI + taxon_id: '173247' + techs: + 10X: + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Echeneis_naucrates/fEcheNa1/genomic_data/10x/ + BN: + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Echeneis_naucrates/fEcheNa1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cygnus_olor/bCygOlo1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Echeneis_naucrates/fEcheNa1/genomic_data/dovetail/ Ilm: status: 4 url: '#' @@ -5151,60 +5079,90 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cygnus_olor/bCygOlo1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Echeneis_naucrates/fEcheNa1/genomic_data/pacbio/ trio: '' - vglId: bCygOlo1 - vgp_phase: phase3 -- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Tamandua_tetradactyla/mTamTet1/assembly_vgp_standard_1.7/ - class: Mammalia,mammals - common_name: southern tamandua - family: Myrmecophagidae + vglId: fEcheNa1 + vgp_phase: phase1 +- asm: '#' + class: Actinopterygii,Bony fishes + common_name: pejerrey + family: Atherinopsidae + hub: vgl + order: Atheriniformes + scientific_name: Odontesthes bonariensis + status: 0-data_queued + taxon_id: '219752' + techs: + 10X: + status: 4 + url: '#' + BN: + status: 0 + url: '#' + HiC: + status: 0 + url: '#' + Ilm: + status: 4 + url: '#' + ONT: + status: 4 + url: '#' + PB: + status: 0 + url: '#' + vglId: fOdoBon1 + vgp_phase: phase2 +- asm: '#' + class: Actinopterygii,Bony fishes + common_name: stoplight loosejaw + family: Stomiidae hub: others - order: Pilosa - scientific_name: Tamandua tetradactyla - status: 5-asm_done - taxon_id: '48850' + order: Stomiiformes + scientific_name: Malacosteus niger + status: 2-data_progress + taxon_id: '76143' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Tamandua_tetradactyla/mTamTet1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Malacosteus_niger/fMalNig1/genomic_data/10x/ BN: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Tamandua_tetradactyla/mTamTet1/genomic_data/bionano/ + status: 0 + url: '#' HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Tamandua_tetradactyla/mTamTet1/genomic_data/hic/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Malacosteus_niger/fMalNig1/genomic_data/arima/ Ilm: - status: 4 + status: 0 url: '#' ONT: - status: 4 + status: 0 url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Tamandua_tetradactyla/mTamTet1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Malacosteus_niger/fMalNig1/genomic_data/pacbio/ trio: '' - vglId: mTamTet1 - vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_902713615.2 - class: Chondrichthyes,cartilaginous fishes - common_name: smaller spotted catshark - family: Scyliorhinidae + vglId: fMalNig1 + vgp_phase: phase2 +- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Theristicus_caerulescens/bTheCae1/assembly_curated/ + class: Aves,birds + common_name: plumbeous ibis + family: Threskiornithidae hub: vgl - order: Carcharhiniformes - scientific_name: Scyliorhinus canicula - status: 8-NCBI - taxon_id: '7830' + order: Pelecaniformes + scientific_name: Theristicus caerulescens + status: 7-asm_curated + taxon_id: '1118847' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Scyliorhinus_canicula/sScyCan1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Theristicus_caerulescens/bTheCae1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Scyliorhinus_canicula/sScyCan1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Theristicus_caerulescens/bTheCae1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Scyliorhinus_canicula/sScyCan1/genomic_data/baylor-hic/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Theristicus_caerulescens/bTheCae1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -5213,9 +5171,9 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Scyliorhinus_canicula/sScyCan1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Theristicus_caerulescens/bTheCae1/genomic_data/pacbio/ trio: '' - vglId: sScyCan1 + vglId: bTheCae1 vgp_phase: phase1 - asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_009769465.1 class: Aves,birds @@ -5249,24 +5207,24 @@ toc: vglId: bTauEry1 vgp_phase: phase1 - asm: '#' - class: Aves,birds - common_name: lammergeier - family: Accipitridae + class: Mammalia,mammals + common_name: nine-banded armadillo + family: Dasypodidae hub: vgl - order: Falconiformes - scientific_name: Gypaetus barbatus - status: 4-asm_progress - taxon_id: '33610' + order: Cingulata + scientific_name: Dasypus novemcinctus + status: 2-data_progress + taxon_id: '9361' techs: 10X: status: 4 url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Gypaetus_barbatus/bGypBar2/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dasypus_novemcinctus/mDasNov1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Gypaetus_barbatus/bGypBar2/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dasypus_novemcinctus/mDasNov1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -5274,30 +5232,30 @@ toc: status: 4 url: '#' PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Gypaetus_barbatus/bGypBar2/genomic_data/pacbio/ + status: 2 + url: '#' trio: '' - vglId: bGypBar2 - vgp_phase: phase3 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_016699485.2 + vglId: mDasNov1 + vgp_phase: phase1 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_015220805.1 class: Aves,birds - common_name: chicken - family: Phasianidae + common_name: Red-fronted tinkerbird + family: Lybiidae hub: vgl - order: Galliformes - scientific_name: Gallus gallus + order: Piciformes + scientific_name: Pogoniulus pusillus status: 8-NCBI - taxon_id: '9031' + taxon_id: '488313' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Gallus_gallus/bGalGal1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pogoniulus_pusillus/bPogPus1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Gallus_gallus/bGalGal1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pogoniulus_pusillus/bPogPus1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Gallus_gallus/bGalGal1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pogoniulus_pusillus/bPogPus1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -5306,29 +5264,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Gallus_gallus/bGalGal1/genomic_data/pacbio/ - trio: bGalGal2/bGalGal3 - vglId: bGalGal1 - vgp_phase: phase1 -- asm: '#' - class: Actinopterygii,Bony fishes - common_name: Adriatic sturgeon - family: Acipenseridae + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pogoniulus_pusillus/bPogPus1/genomic_data/pacbio/ + trio: '' + vglId: bPogPus1 + vgp_phase: phase2 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_009819595.1 + class: Aves,birds + common_name: carmine bee-eater + family: Meropidae hub: vgl - order: Acipenseriformes - scientific_name: Acipenser naccarii - status: 2-data_progress - taxon_id: '42330' + order: Coraciiformes + scientific_name: Merops nubicus + status: 8-NCBI + taxon_id: '57421' techs: 10X: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Merops_nubicus/bMerNub1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Acipenser_naccarii/fAciNac1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Merops_nubicus/bMerNub1/genomic_data/bionano/ HiC: status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Merops_nubicus/bMerNub1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -5336,60 +5294,30 @@ toc: status: 4 url: '#' PB: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Merops_nubicus/bMerNub1/genomic_data/pacbio/ trio: '' - vglId: fAciNac1 - vgp_phase: phase4 -- asm: '#' + vglId: bMerNub1 + vgp_phase: phase1 +- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Falco_peregrinus/bFalPer1/assembly_vgp_standard_2.0/ class: Aves,birds - common_name: Brown-headed cowbird - family: Icteridae + common_name: peregrine falcon + family: Falconidae hub: vgl - order: Passeriformes - scientific_name: Molothrus ater - status: 0-data_queued - taxon_id: '84834' + order: Falconiformes + scientific_name: Falco peregrinus + status: 6-asm_curation + taxon_id: '8954' techs: 10X: status: 4 url: '#' - BN: - status: 0 - url: '#' - HiC: - status: 0 - url: '#' - Ilm: - status: 4 - url: '#' - ONT: - status: 4 - url: '#' - PB: - status: 0 - url: '#' - vglId: bMolAte1 - vgp_phase: phase2 -- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Hemiscyllium_ocellatum/sHemOce1/assembly_curated/ - class: Chondrichthyes,cartilaginous fishes - common_name: epaulette shark - family: Hemiscylliidae - hub: vgl - order: Orectolobiformes - scientific_name: Hemiscyllium ocellatum - status: 7-asm_curated - taxon_id: '170820' - techs: - 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Hemiscyllium_ocellatum/sHemOce1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Hemiscyllium_ocellatum/sHemOce1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Falco_peregrinus/bFalPer1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Hemiscyllium_ocellatum/sHemOce1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Falco_peregrinus/bFalPer1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -5398,28 +5326,28 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Hemiscyllium_ocellatum/sHemOce1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Falco_peregrinus/bFalPer1/genomic_data/pacbio/ trio: '' - vglId: sHemOce1 - vgp_phase: phase1 -- asm: '#' - class: Chondrichthyes,cartilaginous fishes - common_name: Caribbean electric ray - family: Narcinidae - hub: vgl - order: Torpediniformes - scientific_name: Narcine bancroftii - status: 2-data_progress - taxon_id: '1343680' + vglId: bFalPer1 + vgp_phase: phase4 +- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Heterohyrax_brucei/mHetBru1/assembly_vgp_standard_2.1/ + class: Mammalia,mammals + common_name: yellow-spotted hyrax + family: Procaviidae + hub: others + order: Hyracoidea + scientific_name: Heterohyrax brucei + status: 5-asm_done + taxon_id: '77598' techs: 10X: status: 4 url: '#' BN: - status: 2 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Heterohyrax_brucei/mHetBru1/genomic_data/bionano/ HiC: - status: 0 + status: 4 url: '#' Ilm: status: 4 @@ -5428,29 +5356,30 @@ toc: status: 4 url: '#' PB: - status: 0 - url: '#' - vglId: sNarBan1 + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Heterohyrax_brucei/mHetBru1/genomic_data/pacbio/ + trio: '' + vglId: mHetBru1 vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_900246225.5 - class: Actinopterygii,Bony fishes - common_name: eastern happy - family: Cichlidae - hub: others - order: Cichliformes - scientific_name: Astatotilapia calliptera +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_017639485.1 + class: Aves,birds + common_name: European golden plover + family: Charadriidae + hub: vgl + order: Charadriiformes + scientific_name: Pluvialis apricaria status: 8-NCBI - taxon_id: '8154' + taxon_id: '670352' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Astatotilapia_calliptera/fAstCal1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pluvialis_apricaria/bPluApr1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Astatotilapia_calliptera/fAstCal1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pluvialis_apricaria/bPluApr1/genomic_data/bionano/ HiC: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pluvialis_apricaria/bPluApr1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -5459,29 +5388,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Astatotilapia_calliptera/fAstCal1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pluvialis_apricaria/bPluApr1/genomic_data/pacbio/ trio: '' - vglId: fAstCal1 - vgp_phase: phase3 + vglId: bPluApr1 + vgp_phase: phase1 - asm: '#' - class: Mammalia,mammals - common_name: Clouded leopard - family: Felidae + class: Chondrichthyes,cartilaginous fishes + common_name: Caribbean electric ray + family: Narcinidae hub: vgl - order: Carnivora - scientific_name: Neofelis nebulosa + order: Torpediniformes + scientific_name: Narcine bancroftii status: 2-data_progress - taxon_id: '61452' + taxon_id: '1343680' techs: 10X: status: 4 url: '#' BN: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Neofelis_nebulosa/mNeoNeb1/genomic_data/bionano/ + status: 2 + url: '#' HiC: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Neofelis_nebulosa/mNeoNeb1/genomic_data/arima/ + status: 0 + url: '#' Ilm: status: 4 url: '#' @@ -5489,30 +5418,29 @@ toc: status: 4 url: '#' PB: - status: 2 + status: 0 url: '#' - trio: '' - vglId: mNeoNeb1 - vgp_phase: phase3 -- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pan_troglodytes/mPanTro1/assembly_vgp_standard_1.6/ - class: Mammalia,mammals - common_name: chimpanzee - family: Hominidae + vglId: sNarBan1 + vgp_phase: phase1 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_900880675.2 + class: Actinopterygii,Bony fishes + common_name: gilthead seabream + family: Sparidae hub: others - order: Primates - scientific_name: Pan troglodytes - status: 5-asm_done - taxon_id: '9598' + order: Spariformes + scientific_name: Sparus aurata + status: 8-NCBI + taxon_id: '8175' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pan_troglodytes/mPanTro1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sparus_aurata/fSpaAur1/genomic_data/10x/ BN: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pan_troglodytes/mPanTro1/genomic_data/bionano/ - HiC: status: 4 url: '#' + HiC: + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sparus_aurata/fSpaAur1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -5521,59 +5449,60 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pan_troglodytes/mPanTro1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sparus_aurata/fSpaAur1/genomic_data/pacbio/ trio: '' - vglId: mPanTro1 - vgp_phase: phase3 -- asm: '#' - class: Aves,birds - common_name: white-breasted nuthatch - family: Sittidae - hub: vgl - order: Passeriformes - scientific_name: Sitta carolinensis - status: 0-data_queued - taxon_id: '50250' + vglId: fSpaAur1 + vgp_phase: phase1 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_910591455.1 + class: Actinopterygii,Bony fishes + common_name: rock gunnel + family: Pholidae + hub: others + order: Perciformes + scientific_name: Pholis gunnellus + status: 8-NCBI + taxon_id: '56726' techs: 10X: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pholis_gunnellus/fPhoGun1/genomic_data/10x/ BN: - status: 0 + status: 1 url: '#' HiC: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pholis_gunnellus/fPhoGun1/genomic_data/arima/ Ilm: - status: 4 + status: 1 url: '#' ONT: - status: 4 + status: 1 url: '#' PB: - status: 0 - url: '#' - vglId: bSitCar1 + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pholis_gunnellus/fPhoGun1/genomic_data/pacbio/ + trio: '' + vglId: fPhoGun1 vgp_phase: phase2 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_905319845.1 - class: Mammalia,mammals - common_name: Greenland wolf - family: Canidae +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_015237465.2 + class: Reptilia,reptiles + common_name: Green sea turtle + family: Cheloniidae hub: others - order: Carnivora - scientific_name: Canis lupus orion + order: Testudines + scientific_name: Chelonia mydas status: 8-NCBI - taxon_id: '2605939' + taxon_id: '8469' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Canis_lupus_orion/mCanLor1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Chelonia_mydas/rCheMyd1/genomic_data/10x/ BN: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Chelonia_mydas/rCheMyd1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Canis_lupus_orion/mCanLor1/genomic_data/dovetail/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Chelonia_mydas/rCheMyd1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -5582,29 +5511,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Canis_lupus_orion/mCanLor1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Chelonia_mydas/rCheMyd1/genomic_data/pacbio/ trio: '' - vglId: mCanLor1 - vgp_phase: phase2 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_902148845.1 + vglId: rCheMyd1 + vgp_phase: phase1 +- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pholidichthys_leucotaenia/fPhoLeu1/assembly_curated/ class: Actinopterygii,Bony fishes - common_name: jewelled blenny - family: Blenniidae + common_name: convict blenny + family: Pholidichthyidae hub: others - order: Blenniiformes - scientific_name: Salarias fasciatus - status: 8-NCBI - taxon_id: '181472' + order: Cichliformes + scientific_name: Pholidichthys leucotaenia + status: 7-asm_curated + taxon_id: '390368' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Salarias_fasciatus/fSalaFa1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pholidichthys_leucotaenia/fPhoLeu1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Salarias_fasciatus/fSalaFa1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pholidichthys_leucotaenia/fPhoLeu1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Salarias_fasciatus/fSalaFa1/genomic_data/dovetail/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pholidichthys_leucotaenia/fPhoLeu1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -5613,28 +5542,28 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Salarias_fasciatus/fSalaFa1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pholidichthys_leucotaenia/fPhoLeu1/genomic_data/pacbio/ trio: '' - vglId: fSalaFa1 + vglId: fPhoLeu1 vgp_phase: phase1 - asm: '#' class: Amphibia,amphibians - common_name: tailed frog - family: Ascaphidae + common_name: Puerto Rican coqui + family: Eleutherodactylidae hub: vgl order: Anura - scientific_name: Ascaphus truei + scientific_name: Eleutherodactylus coqui status: 2-data_progress - taxon_id: '8439' + taxon_id: '57060' techs: 10X: status: 4 url: '#' BN: - status: 3 + status: 2 url: '#' HiC: - status: 1 + status: 0 url: '#' Ilm: status: 4 @@ -5643,81 +5572,50 @@ toc: status: 4 url: '#' PB: - status: 2 + status: 0 url: '#' - vglId: aAscTru4 + vglId: aEleCoq1 vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_010909765.2 - class: Chondrichthyes,cartilaginous fishes - common_name: thorny skate - family: Rajidae +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_009769535.1 + class: Reptilia,reptiles + common_name: Western terrestrial garter snake + family: Colubridae hub: vgl - order: Rajiformes - scientific_name: Amblyraja radiata + order: Squamata + scientific_name: Thamnophis elegans status: 8-NCBI - taxon_id: '386614' + taxon_id: '35005' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Amblyraja_radiata/sAmbRad1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Thamnophis_elegans/rThaEle1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Amblyraja_radiata/sAmbRad1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Thamnophis_elegans/rThaEle1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Amblyraja_radiata/sAmbRad1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Thamnophis_elegans/rThaEle1/genomic_data/dovetail/ Ilm: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Amblyraja_radiata/sAmbRad1/genomic_data/illumina/ + status: 4 + url: '#' ONT: status: 4 url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Amblyraja_radiata/sAmbRad1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Thamnophis_elegans/rThaEle1/genomic_data/pacbio/ trio: '' - vglId: sAmbRad1 + vglId: rThaEle1 vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_014176215.1 - class: Mammalia,mammals - common_name: Egyptian rousette - family: Pteropodidae - hub: vgl - order: Chiroptera - scientific_name: Rousettus aegyptiacus - status: 8-NCBI - taxon_id: '9407' - techs: - 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rousettus_aegyptiacus/mRouAeg1/genomic_data/10x/ - BN: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rousettus_aegyptiacus/mRouAeg1/genomic_data/bionano/ - HiC: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rousettus_aegyptiacus/mRouAeg1/genomic_data/arima/ - Ilm: - status: 4 - url: '#' - ONT: - status: 4 - url: '#' - PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rousettus_aegyptiacus/mRouAeg1/genomic_data/pacbio/ - trio: '' - vglId: mRouAeg1 - vgp_phase: phase2 - asm: '#' class: Amphibia,amphibians - common_name: Sardinian tree frog - family: Hylidae + common_name: Riggenbach's reed frog + family: Hyperoliidae hub: vgl order: Anura - scientific_name: Hyla sarda + scientific_name: Hyperolius riggenbachi status: 2-data_progress - taxon_id: '327740' + taxon_id: '752182' techs: 10X: status: 4 @@ -5726,7 +5624,7 @@ toc: status: 1 url: '#' HiC: - status: 0 + status: 2 url: '#' Ilm: status: 4 @@ -5735,29 +5633,29 @@ toc: status: 4 url: '#' PB: - status: 2 + status: 0 url: '#' - vglId: aHylSar1 - vgp_phase: phase3 -- asm: '#' - class: Reptilia,reptiles - common_name: snub-nosed viper - family: Viperidae + vglId: aHypRig1 + vgp_phase: phase1 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_003957565.2 + class: Aves,birds + common_name: zebra finch + family: Estrildidae hub: vgl - order: Squamata - scientific_name: Vipera latastei - status: 6-asm_curation - taxon_id: '246179' + order: Passeriformes + scientific_name: Taeniopygia guttata + status: 8-NCBI + taxon_id: '59729' techs: 10X: - status: 4 + status: 1 url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Vipera_latastei/rVipLat1/genomic_data/bionano/ + url: '#' HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Vipera_latastei/rVipLat1/genomic_data/arima/ + url: '#' Ilm: status: 4 url: '#' @@ -5766,29 +5664,28 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Vipera_latastei/rVipLat1/genomic_data/pacbio/ - trio: '' - vglId: rVipLat1 - vgp_phase: phase1 -- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Danio_rerio/fDreSAT1/assembly_curated/ - class: Actinopterygii,Bony fishes - common_name: zebrafish - family: Danionidae - hub: others - order: Cypriniformes - scientific_name: Danio rerio - status: 7-asm_curated - taxon_id: '7955' + url: '#' + vglId: bTaeGut1 + vgp_phase: other +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_009829145.1 + class: Aves,birds + common_name: lance-tailed manakin + family: Pipridae + hub: vgl + order: Passeriformes + scientific_name: Chiroxiphia lanceolata + status: 8-NCBI + taxon_id: '296741' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Danio_rerio/fDreSAT1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Chiroxiphia_lanceolata/bChiLan1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Danio_rerio/fDreSAT1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Chiroxiphia_lanceolata/bChiLan1/genomic_data/bionano/ HiC: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Chiroxiphia_lanceolata/bChiLan1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -5797,29 +5694,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Danio_rerio/fDreSAT1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Chiroxiphia_lanceolata/bChiLan1/genomic_data/pacbio/ trio: '' - vglId: fDreSAT1 + vglId: bChiLan1 vgp_phase: phase1 -- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Scatophagus_argus/fScaArg1/assembly_curated/ - class: Enteropneusta,Bony fishes - common_name: spotted scat - family: Scatophagidae - hub: others - order: '' - scientific_name: Scatophagus argus - status: 7-asm_curated - taxon_id: '75038' +- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Falco_biarmicus/bFalBia1/assembly_vgp_standard_2.0/ + class: Aves,birds + common_name: lanner falcon + family: Falconidae + hub: vgl + order: Falconiformes + scientific_name: Falco biarmicus + status: 6-asm_curation + taxon_id: '345155' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Scatophagus_argus/fScaArg1/genomic_data/10x/ + status: 4 + url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Scatophagus_argus/fScaArg1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Falco_biarmicus/bFalBia1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Scatophagus_argus/fScaArg1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Falco_biarmicus/bFalBia1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -5828,29 +5725,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Scatophagus_argus/fScaArg1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Falco_biarmicus/bFalBia1/genomic_data/pacbio/ trio: '' - vglId: fScaArg1 - vgp_phase: phase1 + vglId: bFalBia1 + vgp_phase: phase4 - asm: '#' class: Mammalia,mammals - common_name: gray short-tailed opossum - family: Didelphidae + common_name: tammar wallaby + family: Macropodidae hub: vgl - order: Didelphimorphia - scientific_name: Monodelphis domestica - status: 2-data_progress - taxon_id: '13616' + order: Diprotodontia + scientific_name: Macropus eugenii + status: 3-data_done + taxon_id: '9315' techs: 10X: status: 4 url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Monodelphis_domestica/mMonDom1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Macropus_eugenii/mMacEug1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Monodelphis_domestica/mMonDom1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Macropus_eugenii/mMacEug1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -5858,30 +5755,30 @@ toc: status: 4 url: '#' PB: - status: 2 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Macropus_eugenii/mMacEug1/genomic_data/pacbio/ trio: '' - vglId: mMonDom1 + vglId: mMacEug1 vgp_phase: phase1 -- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Apus_apus/bApuApu2/assembly_curated/ - class: Aves,birds - common_name: common swift - family: Apodidae - hub: others - order: Apodiformes - scientific_name: Apus apus - status: 7-asm_curated - taxon_id: '8895' +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_014108255.1 + class: Mammalia,mammals + common_name: greater horseshoe bat + family: Rhinolophidae + hub: vgl + order: Chiroptera + scientific_name: Rhinolophus ferrumequinum + status: 8-NCBI + taxon_id: '59479' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Apus_apus/bApuApu2/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rhinolophus_ferrumequinum/mRhiFer1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Apus_apus/bApuApu2/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rhinolophus_ferrumequinum/mRhiFer1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Apus_apus/bApuApu2/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rhinolophus_ferrumequinum/mRhiFer1/genomic_data/phase/ Ilm: status: 4 url: '#' @@ -5890,28 +5787,28 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Apus_apus/bApuApu2/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rhinolophus_ferrumequinum/mRhiFer1/genomic_data/pacbio/ trio: '' - vglId: bApuApu2 + vglId: mRhiFer1 vgp_phase: phase1 -- asm: '#' - class: Aves,birds - common_name: Kauai elepaio - family: Monarchidae - hub: vgl - order: Passeriformes - scientific_name: Chasiempis sclateri - status: 2-data_progress - taxon_id: '1576535' +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_902167405.1 + class: Actinopterygii,Bony fishes + common_name: Atlantic cod + family: Gadidae + hub: others + order: Gadiformes + scientific_name: Gadus morhua + status: 8-NCBI + taxon_id: '8049' techs: 10X: - status: 4 + status: 1 url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Chasiempis_sclateri/bChaScl1/genomic_data/bionano/ + url: '#' HiC: - status: 3 + status: 1 url: '#' Ilm: status: 4 @@ -5920,30 +5817,30 @@ toc: status: 4 url: '#' PB: - status: 0 + status: 1 url: '#' trio: '' - vglId: bChaScl1 - vgp_phase: phase2 -- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Corvus_hawaiiensis/bCorHaw1/assembly_curated/ + vglId: fGadMor1 + vgp_phase: phase1 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_004027225.2 class: Aves,birds - common_name: hawaiian crow - family: Corvidae - hub: vgl - order: Passeriformes - scientific_name: Corvus hawaiiensis - status: 7-asm_curated - taxon_id: '134902' + common_name: Kakapo + family: Psittacidae + hub: others + order: Psittaciformes + scientific_name: Strigops habroptilus + status: 8-NCBI + taxon_id: '57251' techs: 10X: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Strigops_habroptilus/bStrHab1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Corvus_hawaiiensis/bCorHaw1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Strigops_habroptilus/bStrHab1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Corvus_hawaiiensis/bCorHaw1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Strigops_habroptilus/bStrHab1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -5952,29 +5849,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Corvus_hawaiiensis/bCorHaw1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Strigops_habroptilus/bStrHab1/genomic_data/pacbio/ trio: '' - vglId: bCorHaw1 - vgp_phase: phase4 -- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Heterohyrax_brucei/mHetBru1/assembly_vgp_standard_2.1/ + vglId: bStrHab1 + vgp_phase: phase1 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_014108245.1 class: Mammalia,mammals - common_name: yellow-spotted hyrax - family: Procaviidae + common_name: Kuhl's pipistrelle + family: Vespertilionidae hub: others - order: Hyracoidea - scientific_name: Heterohyrax brucei - status: 5-asm_done - taxon_id: '77598' - techs: + order: Chiroptera + scientific_name: Pipistrellus kuhlii + status: 8-NCBI + taxon_id: '59472' + techs: 10X: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pipistrellus_kuhlii/mPipKuh1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Heterohyrax_brucei/mHetBru1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pipistrellus_kuhlii/mPipKuh1/genomic_data/bionano/ HiC: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pipistrellus_kuhlii/mPipKuh1/genomic_data/phase/ Ilm: status: 4 url: '#' @@ -5983,29 +5880,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Heterohyrax_brucei/mHetBru1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pipistrellus_kuhlii/mPipKuh1/genomic_data/pacbio/ trio: '' - vglId: mHetBru1 - vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_009769525.1 - class: Aves,birds - common_name: yellow-throated sandgrouse - family: Pteroclidae + vglId: mPipKuh1 + vgp_phase: phase4 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_901000725.3 + class: Actinopterygii,Bony fishes + common_name: torafugu + family: Tetraodontidae hub: vgl - order: Pterocliformes - scientific_name: Pterocles gutturalis + order: Tetraodontiformes + scientific_name: Takifugu rubripes status: 8-NCBI - taxon_id: '240206' + taxon_id: '31033' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pterocles_gutturalis/bPteGut1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Takifugu_rubripes/fTakRub1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pterocles_gutturalis/bPteGut1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Takifugu_rubripes/fTakRub1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pterocles_gutturalis/bPteGut1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Takifugu_rubripes/fTakRub1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -6014,29 +5911,60 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pterocles_gutturalis/bPteGut1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Takifugu_rubripes/fTakRub1/genomic_data/pacbio/ trio: '' - vglId: bPteGut1 + vglId: fTakRub1 vgp_phase: phase1 - asm: '#' - class: Actinopterygii,Bony fishes - common_name: chub mackerel - family: Scombridae + class: Mammalia,mammals + common_name: slow loris + family: Lorisidae hub: vgl - order: Scombriformes - scientific_name: Scomber japonicus - status: 3-data_done - taxon_id: '13676' + order: Primates + scientific_name: Nycticebus coucang + status: 2-data_progress + taxon_id: '9470' techs: 10X: status: 4 url: '#' BN: - status: 0 + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Nycticebus_coucang/mNycCou1/genomic_data/bionano/ + HiC: + status: 1 url: '#' + Ilm: + status: 4 + url: '#' + ONT: + status: 4 + url: '#' + PB: + status: 2 + url: '#' + trio: '' + vglId: mNycCou1 + vgp_phase: phase1 +- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Nomonyx_dominicus/bNomDom1/assembly_vgp_standard_1.5/ + class: Aves,birds + common_name: Masked duck + family: Anatidae + hub: vgl + order: Anseriformes + scientific_name: Nomonyx dominicus + status: 5-asm_done + taxon_id: '555276' + techs: + 10X: + status: 4 + url: '#' + BN: + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Nomonyx_dominicus/bNomDom1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Scomber_japonicus/fScoJap1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Nomonyx_dominicus/bNomDom1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -6045,19 +5973,19 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Scomber_japonicus/fScoJap1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Nomonyx_dominicus/bNomDom1/genomic_data/pacbio/ trio: '' - vglId: fScoJap1 - vgp_phase: phase1 + vglId: bNomDom1 + vgp_phase: phase3 - asm: '#' class: Aves,birds - common_name: Common starling - family: Sturnidae + common_name: Eastern phoebe + family: Tyrannidae hub: vgl order: Passeriformes - scientific_name: Sturnus vulgaris - status: 1-DNA_isolation - taxon_id: '9172' + scientific_name: Sayornis phoebe + status: 0-data_queued + taxon_id: '56315' techs: 10X: status: 4 @@ -6077,27 +6005,27 @@ toc: PB: status: 0 url: '#' - vglId: bStuVul1 + vglId: bSayPho1 vgp_phase: phase2 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_008658365.1 - class: Aves,birds - common_name: razorbill - family: Alcidae +- asm: '#' + class: Mammalia,mammals + common_name: grey whale + family: Eschrichtiidae hub: vgl - order: Charadriiformes - scientific_name: Alca torda - status: 8-NCBI - taxon_id: '28689' + order: Artiodactyla + scientific_name: Eschrichtius robustus + status: 2-data_progress + taxon_id: '9764' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Alca_torda/bAlcTor1/genomic_data/10x/ + status: 4 + url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Alca_torda/bAlcTor1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Eschrichtius_robustus/mEscRob1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Alca_torda/bAlcTor1/genomic_data/arima/ + url: '#' Ilm: status: 4 url: '#' @@ -6105,30 +6033,30 @@ toc: status: 4 url: '#' PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Alca_torda/bAlcTor1/genomic_data/pacbio/ + status: 2 + url: '#' trio: '' - vglId: bAlcTor1 + vglId: mEscRob1 vgp_phase: phase2 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_009819605.1 +- asm: '#' class: Aves,birds - common_name: Common tern - family: Laridae + common_name: saltmarsh sparrow + family: Passerellidae hub: vgl - order: Charadriiformes - scientific_name: Sterna hirundo - status: 8-NCBI - taxon_id: '108405' + order: Passeriformes + scientific_name: Ammodramus caudacutus + status: 2-data_progress + taxon_id: '69262' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sterna_hirundo/bSteHir1/genomic_data/10x/ + status: 4 + url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sterna_hirundo/bSteHir1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Ammodramus_caudacutus/bAmmCau1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sterna_hirundo/bSteHir1/genomic_data/arima/ + url: '#' Ilm: status: 4 url: '#' @@ -6136,27 +6064,27 @@ toc: status: 4 url: '#' PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sterna_hirundo/bSteHir1/genomic_data/pacbio/ + status: 2 + url: '#' trio: '' - vglId: bSteHir1 - vgp_phase: phase3 + vglId: bAmmCau1 + vgp_phase: phase4 - asm: '#' - class: Amphibia,amphibians - common_name: corroboree frog - family: Myobatrachidae + class: Aves,birds + common_name: kagu + family: Rhynochetidae hub: vgl - order: Anura - scientific_name: Pseudophryne corroboree + order: Gruiformes + scientific_name: Rhynochetos jubatus status: 2-data_progress - taxon_id: '495146' + taxon_id: '54386' techs: 10X: status: 4 url: '#' BN: status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rhynochetos_jubatus/bRhyJub1/genomic_data/bionano/ HiC: status: 0 url: '#' @@ -6167,29 +6095,61 @@ toc: status: 4 url: '#' PB: - status: 2 + status: 0 url: '#' - vglId: aPseCor3 + trio: '' + vglId: bRhyJub1 vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_011762505.1 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_910596095.1 + class: Actinopterygii,Bony fishes + common_name: southern bluefin tuna + family: Scombridae + hub: others + order: Scombriformes + scientific_name: Thunnus maccoyii + status: 8-NCBI + taxon_id: '8240' + techs: + 10X: + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Thunnus_maccoyii/fThuMac1/genomic_data/10x/ + BN: + status: 1 + url: '#' + HiC: + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Thunnus_maccoyii/fThuMac1/genomic_data/arima/ + Ilm: + status: 1 + url: '#' + ONT: + status: 1 + url: '#' + PB: + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Thunnus_maccoyii/fThuMac1/genomic_data/pacbio/ + trio: '' + vglId: fThuMac1 + vgp_phase: phase3 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_011100635.1 class: Mammalia,mammals - common_name: African grass rat - family: Muridae + common_name: common brushtail + family: Phalangeridae hub: vgl - order: Rodentia - scientific_name: Arvicanthis niloticus + order: Diprotodontia + scientific_name: Trichosurus vulpecula status: 8-NCBI - taxon_id: '61156' + taxon_id: '9337' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Arvicanthis_niloticus/mArvNil1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Trichosurus_vulpecula/mTriVul1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Arvicanthis_niloticus/mArvNil1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Trichosurus_vulpecula/mTriVul1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Arvicanthis_niloticus/mArvNil1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Trichosurus_vulpecula/mTriVul1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -6198,19 +6158,19 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Arvicanthis_niloticus/mArvNil1/genomic_data/pacbio/ - trio: mArvNil2/mArvNil3 - vglId: mArvNil1 - vgp_phase: phase3 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Trichosurus_vulpecula/mTriVul1/genomic_data/pacbio/ + trio: '' + vglId: mTriVul1 + vgp_phase: phase1 - asm: '#' class: Aves,birds - common_name: American goldfinch - family: Fringillidae + common_name: red-winged blackbird + family: Icteridae hub: vgl order: Passeriformes - scientific_name: Spinus tristis + scientific_name: Agelaius phoeniceus status: 1-DNA_isolation - taxon_id: '54773' + taxon_id: '39638' techs: 10X: status: 4 @@ -6230,26 +6190,26 @@ toc: PB: status: 0 url: '#' - vglId: bSpiTri1 + vglId: bAgePho1 vgp_phase: phase3 - asm: '#' - class: Mammalia,mammals - common_name: alpaca - family: Camelidae + class: Amphibia,amphibians + common_name: tailed frog + family: Ascaphidae hub: vgl - order: Artiodactyla - scientific_name: Vicugna pacos - status: 0-data_queued - taxon_id: '30538' + order: Anura + scientific_name: Ascaphus truei + status: 2-data_progress + taxon_id: '8439' techs: 10X: status: 4 url: '#' BN: - status: 0 + status: 3 url: '#' HiC: - status: 0 + status: 1 url: '#' Ilm: status: 4 @@ -6258,29 +6218,29 @@ toc: status: 4 url: '#' PB: - status: 0 + status: 2 url: '#' - vglId: mVicPac1 - vgp_phase: phase2 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_903797595.2 + vglId: aAscTru4 + vgp_phase: phase1 +- asm: '#' class: Aves,birds - common_name: European robin - family: Turdidae - hub: others - order: Passeriformes - scientific_name: Erithacus rubecula - status: 8-NCBI - taxon_id: '37610' + common_name: chicken + family: Phasianidae + hub: vgl + order: Galliformes + scientific_name: Gallus gallus + status: 7-asm_curated + taxon_id: '9031' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Erithacus_rubecula/bEriRub2/genomic_data/10x/ - BN: status: 4 url: '#' + BN: + status: 1 + url: '#' HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Erithacus_rubecula/bEriRub2/genomic_data/dovetail/ + url: '#' Ilm: status: 4 url: '#' @@ -6289,29 +6249,28 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Erithacus_rubecula/bEriRub2/genomic_data/pacbio/ - trio: '' - vglId: bEriRub2 - vgp_phase: phase3 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_009762305.2 - class: Mammalia,mammals - common_name: California sea lion - family: Otariidae + url: '#' + vglId: bGalGal5 + vgp_phase: other +- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Corvus_hawaiiensis/bCorHaw1/assembly_curated/ + class: Aves,birds + common_name: hawaiian crow + family: Corvidae hub: vgl - order: Carnivora - scientific_name: Zalophus californianus - status: 8-NCBI - taxon_id: '9704' + order: Passeriformes + scientific_name: Corvus hawaiiensis + status: 7-asm_curated + taxon_id: '134902' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Zalophus_californianus/mZalCal1/genomic_data/10x/ + status: 4 + url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Zalophus_californianus/mZalCal1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Corvus_hawaiiensis/bCorHaw1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Zalophus_californianus/mZalCal1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Corvus_hawaiiensis/bCorHaw1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -6320,60 +6279,60 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Zalophus_californianus/mZalCal1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Corvus_hawaiiensis/bCorHaw1/genomic_data/pacbio/ trio: '' - vglId: mZalCal1 - vgp_phase: phase2 -- asm: '#' - class: Aves,birds - common_name: Nelson's sparrow - family: Passerellidae + vglId: bCorHaw1 + vgp_phase: phase3 +- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Erethizon_dorsatum/mEreDor1/assembly_vgp_standard_1.7/ + class: Mammalia,mammals + common_name: North American porcupine + family: Erethizontidae hub: vgl - order: Passeriformes - scientific_name: Ammospiza nelsoni - status: 2-data_progress - taxon_id: '2857394' + order: Rodentia + scientific_name: Erethizon dorsatum + status: 6-asm_curation + taxon_id: '34844' techs: 10X: + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Erethizon_dorsatum/mEreDor1/genomic_data/10x/ + BN: status: 4 url: '#' - BN: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Ammospiza_nelsoni/bAmmNel1/genomic_data/bionano/ HiC: status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Erethizon_dorsatum/mEreDor1/genomic_data/arima/ Ilm: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Erethizon_dorsatum/mEreDor1/genomic_data/illumina/ ONT: status: 4 url: '#' PB: - status: 2 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Erethizon_dorsatum/mEreDor1/genomic_data/pacbio/ trio: '' - vglId: bAmmNel1 - vgp_phase: phase3 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_901699155.2 - class: Aves,birds - common_name: European turtle dove - family: Columbidae - hub: others - order: Columbiformes - scientific_name: Streptopelia turtur - status: 8-NCBI - taxon_id: '177155' + vglId: mEreDor1 + vgp_phase: phase1 +- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Suncus_etruscus/mSunEtr1/assembly_vgp_standard_1.7/ + class: Mammalia,mammals + common_name: white-toothed pygmy shrew + family: Soricidae + hub: vgl + order: Eulipotyphla + scientific_name: Suncus etruscus + status: 6-asm_curation + taxon_id: '109475' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Streptopelia_turtur/bStrTur1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Suncus_etruscus/mSunEtr1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Streptopelia_turtur/bStrTur1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Suncus_etruscus/mSunEtr1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Streptopelia_turtur/bStrTur1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Suncus_etruscus/mSunEtr1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -6382,9 +6341,9 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Streptopelia_turtur/bStrTur1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Suncus_etruscus/mSunEtr1/genomic_data/pacbio/ trio: '' - vglId: bStrTur1 + vglId: mSunEtr1 vgp_phase: phase1 - asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Jaculus_jaculus/mJacJac1/assembly_curated/ class: Mammalia,mammals @@ -6417,24 +6376,55 @@ toc: trio: mJacJac2/mJacJac3 vglId: mJacJac1 vgp_phase: phase1 -- asm: '#' +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_009764595.1 class: Aves,birds - common_name: chipping sparrow - family: Passerellidae + common_name: common yellowthroat + family: Parulidae hub: vgl order: Passeriformes - scientific_name: Spizella passerina - status: 0-data_queued - taxon_id: '40210' + scientific_name: Geothlypis trichas + status: 8-NCBI + taxon_id: '135433' techs: 10X: + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Geothlypis_trichas/bGeoTri1/genomic_data/10x/ + BN: + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Geothlypis_trichas/bGeoTri1/genomic_data/bionano/ + HiC: + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Geothlypis_trichas/bGeoTri1/genomic_data/arima/ + Ilm: status: 4 url: '#' - BN: - status: 0 + ONT: + status: 4 + url: '#' + PB: + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Geothlypis_trichas/bGeoTri1/genomic_data/pacbio/ + trio: '' + vglId: bGeoTri1 + vgp_phase: phase2 +- asm: '#' + class: Mammalia,mammals + common_name: North Atlantic right whale + family: Balaenidae + hub: vgl + order: Artiodactyla + scientific_name: Eubalaena glacialis + status: 3-data_done + taxon_id: '27606' + techs: + 10X: + status: 4 url: '#' + BN: + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Eubalaena_glacialis/mEubGla1/genomic_data/bionano/ HiC: - status: 0 + status: 1 url: '#' Ilm: status: 4 @@ -6443,29 +6433,30 @@ toc: status: 4 url: '#' PB: - status: 0 - url: '#' - vglId: bSpiPas1 - vgp_phase: phase3 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_011004845.1 + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Eubalaena_glacialis/mEubGla1/genomic_data/pacbio/ + trio: '' + vglId: mEubGla1 + vgp_phase: phase2 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_014839995.1 class: Actinopterygii,Bony fishes - common_name: northern pike - family: Esocidae + common_name: freshwater garfish + family: Belonidae hub: others - order: Esociformes - scientific_name: Esox lucius + order: Beloniformes + scientific_name: Xenentodon cancila status: 8-NCBI - taxon_id: '8010' + taxon_id: '129108' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Esox_lucius/fEsoLuc1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Xenentodon_cancila/fXenCan1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Esox_lucius/fEsoLuc1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Xenentodon_cancila/fXenCan1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Esox_lucius/fEsoLuc1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Xenentodon_cancila/fXenCan1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -6474,29 +6465,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Esox_lucius/fEsoLuc1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Xenentodon_cancila/fXenCan1/genomic_data/pacbio/ trio: '' - vglId: fEsoLuc1 + vglId: fXenCan1 vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_017639555.1 - class: Aves,birds - common_name: maguari stork - family: Ciconiidae +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_009819535.1 + class: Reptilia,reptiles + common_name: sand lizard + family: Lacertidae hub: vgl - order: Ciconiiformes - scientific_name: Ciconia maguari + order: Squamata + scientific_name: Lacerta agilis status: 8-NCBI - taxon_id: '52777' + taxon_id: '80427' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Ciconia_maguari/bCicMag1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lacerta_agilis/rLacAgi1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Ciconia_maguari/bCicMag1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lacerta_agilis/rLacAgi1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Ciconia_maguari/bCicMag1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lacerta_agilis/rLacAgi1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -6505,60 +6496,90 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Ciconia_maguari/bCicMag1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lacerta_agilis/rLacAgi1/genomic_data/pacbio/ trio: '' - vglId: bCicMag1 + vglId: rLacAgi1 vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_003957555.1 - class: Aves,birds - common_name: Anna's hummingbird - family: Trochilidae +- asm: '#' + class: Actinopterygii,Bony fishes + common_name: barbel + family: Cyprinidae hub: others - order: Apodiformes - scientific_name: Calypte anna - status: 8-NCBI - taxon_id: '9244' + order: Cypriniformes + scientific_name: Barbus barbus + status: 2-data_progress + taxon_id: '40830' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Calypte_anna/bCalAnn1/genomic_data/10x/ + status: 0 + url: '#' BN: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Calypte_anna/bCalAnn1/genomic_data/bionano/ + status: 0 + url: '#' HiC: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Calypte_anna/bCalAnn1/genomic_data/phase/ + status: 0 + url: '#' Ilm: - status: 4 + status: 0 url: '#' ONT: - status: 4 + status: 0 url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Calypte_anna/bCalAnn1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Barbus_barbus/fBarBab1/genomic_data/pacbio/ trio: '' - vglId: bCalAnn1 - vgp_phase: phase1 + vglId: fBarBab1 + vgp_phase: phase2 - asm: '#' class: Mammalia,mammals - common_name: tammar wallaby - family: Macropodidae + common_name: alpaca + family: Camelidae hub: vgl - order: Diprotodontia - scientific_name: Macropus eugenii - status: 3-data_done - taxon_id: '9315' + order: Artiodactyla + scientific_name: Vicugna pacos + status: 0-data_queued + taxon_id: '30538' techs: 10X: status: 4 url: '#' + BN: + status: 0 + url: '#' + HiC: + status: 0 + url: '#' + Ilm: + status: 4 + url: '#' + ONT: + status: 4 + url: '#' + PB: + status: 0 + url: '#' + vglId: mVicPac1 + vgp_phase: phase2 +- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Scatophagus_argus/fScaArg1/assembly_curated/ + class: Enteropneusta,Bony fishes + common_name: spotted scat + family: Scatophagidae + hub: others + order: '' + scientific_name: Scatophagus argus + status: 7-asm_curated + taxon_id: '75038' + techs: + 10X: + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Scatophagus_argus/fScaArg1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Macropus_eugenii/mMacEug1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Scatophagus_argus/fScaArg1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Macropus_eugenii/mMacEug1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Scatophagus_argus/fScaArg1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -6567,29 +6588,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Macropus_eugenii/mMacEug1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Scatophagus_argus/fScaArg1/genomic_data/pacbio/ trio: '' - vglId: mMacEug1 + vglId: fScaArg1 vgp_phase: phase1 -- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Branta_leucopsis/bBraLeu1/assembly_vgp_standard_1.5/ - class: Aves,birds - common_name: barnacle goose - family: Anatidae +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_009762305.2 + class: Mammalia,mammals + common_name: California sea lion + family: Otariidae hub: vgl - order: Anseriformes - scientific_name: Branta leucopsis - status: 5-asm_done - taxon_id: '184711' + order: Carnivora + scientific_name: Zalophus californianus + status: 8-NCBI + taxon_id: '9704' techs: 10X: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Zalophus_californianus/mZalCal1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Branta_leucopsis/bBraLeu1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Zalophus_californianus/mZalCal1/genomic_data/bionano/ HiC: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Zalophus_californianus/mZalCal1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -6598,29 +6619,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Branta_leucopsis/bBraLeu1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Zalophus_californianus/mZalCal1/genomic_data/pacbio/ trio: '' - vglId: bBraLeu1 - vgp_phase: phase3 + vglId: mZalCal1 + vgp_phase: phase2 - asm: '#' - class: Aves,birds - common_name: song sparrow - family: Passerellidae + class: Reptilia,reptiles + common_name: diamondback terrapin + family: Emydidae hub: vgl - order: Passeriformes - scientific_name: Melospiza georgiana + order: Testudines + scientific_name: Malaclemys terrapin status: 2-data_progress - taxon_id: '44398' + taxon_id: '8485' techs: 10X: status: 4 url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Melospiza_georgiana/bMelGeo1/genomic_data/bionano/ + url: '#' HiC: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Melospiza_georgiana/bMelGeo1/genomic_data/arima/ + status: 0 + url: '#' Ilm: status: 4 url: '#' @@ -6628,30 +6649,29 @@ toc: status: 4 url: '#' PB: - status: 2 + status: 0 url: '#' - trio: '' - vglId: bMelGeo1 - vgp_phase: phase4 -- asm: '#' - class: Aves,birds - common_name: common myna - family: Sturnidae + vglId: rMalTer1 + vgp_phase: phase1 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_011762505.1 + class: Mammalia,mammals + common_name: African grass rat + family: Muridae hub: vgl - order: Passeriformes - scientific_name: Acridotheres tristis - status: 4-asm_progress - taxon_id: '279927' + order: Rodentia + scientific_name: Arvicanthis niloticus + status: 8-NCBI + taxon_id: '61156' techs: 10X: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Arvicanthis_niloticus/mArvNil1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Acridotheres_tristis/bAcrTri1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Arvicanthis_niloticus/mArvNil1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Acridotheres_tristis/bAcrTri1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Arvicanthis_niloticus/mArvNil1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -6660,29 +6680,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Acridotheres_tristis/bAcrTri1/genomic_data/pacbio/ - trio: '' - vglId: bAcrTri1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Arvicanthis_niloticus/mArvNil1/genomic_data/pacbio/ + trio: mArvNil2/mArvNil3 + vglId: mArvNil1 vgp_phase: phase3 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_902655055.2 - class: Mammalia,mammals - common_name: Eurasian river otter - family: Mustelidae - hub: others - order: Carnivora - scientific_name: Lutra lutra - status: 8-NCBI - taxon_id: '9657' +- asm: '#' + class: ',arthropods' + common_name: snow crab + family: Majidae + hub: vgl + order: Decapoda + scientific_name: Chionoecetes opilio + status: 2-data_progress + taxon_id: '41210' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lutra_lutra/mLutLut1/genomic_data/10x/ - BN: status: 4 url: '#' + BN: + status: 3 + url: '#' HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lutra_lutra/mLutLut1/genomic_data/baylor-hic/ + url: '#' Ilm: status: 4 url: '#' @@ -6690,30 +6710,29 @@ toc: status: 4 url: '#' PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lutra_lutra/mLutLut1/genomic_data/pacbio/ - trio: '' - vglId: mLutLut1 - vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_901001135.2 - class: Amphibia,amphibians - common_name: two-lined caecilian - family: Rhinatrematidae - hub: others - order: Apoda - scientific_name: Rhinatrema bivittatum + status: 2 + url: '#' + vglId: qChiOpi2 + vgp_phase: phase2 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_009819825.1 + class: Aves,birds + common_name: Red-legged seriema + family: Cariamidae + hub: vgl + order: Cariamiformes + scientific_name: Cariama cristata status: 8-NCBI - taxon_id: '194408' + taxon_id: '54380' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rhinatrema_bivittatum/aRhiBiv1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cariama_cristata/bCarCri1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rhinatrema_bivittatum/aRhiBiv1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cariama_cristata/bCarCri1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rhinatrema_bivittatum/aRhiBiv1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cariama_cristata/bCarCri1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -6722,29 +6741,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rhinatrema_bivittatum/aRhiBiv1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cariama_cristata/bCarCri1/genomic_data/pacbio/ trio: '' - vglId: aRhiBiv1 + vglId: bCarCri1 vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_008822115.3 +- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Trogon_surrucura/bTroSur1/assembly_curated/ class: Aves,birds - common_name: zebra finch - family: Estrildidae + common_name: Suruca trogon + family: Trogonidae hub: vgl - order: Passeriformes - scientific_name: Taeniopygia guttata - status: 8-NCBI - taxon_id: '59729' + order: Trogoniformes + scientific_name: Trogon surrucura + status: 7-asm_curated + taxon_id: '297711' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Taeniopygia_guttata/bTaeGut2/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Trogon_surrucura/bTroSur1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Taeniopygia_guttata/bTaeGut2/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Trogon_surrucura/bTroSur1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Taeniopygia_guttata/bTaeGut2/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Trogon_surrucura/bTroSur1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -6753,29 +6772,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Taeniopygia_guttata/bTaeGut2/genomic_data/pacbio/ - trio: bTaeGut3/bTaeGut4 - vglId: bTaeGut2 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Trogon_surrucura/bTroSur1/genomic_data/pacbio/ + trio: '' + vglId: bTroSur1 vgp_phase: phase1 -- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Suncus_etruscus/mSunEtr1/assembly_vgp_standard_1.7/ - class: Mammalia,mammals - common_name: white-toothed pygmy shrew - family: Soricidae +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_011004875.1 + class: Aves,birds + common_name: grey crowned-crane + family: Gruidae hub: vgl - order: Eulipotyphla - scientific_name: Suncus etruscus - status: 6-asm_curation - taxon_id: '109475' + order: Gruiformes + scientific_name: Balearica regulorum + status: 8-NCBI + taxon_id: '925459' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Suncus_etruscus/mSunEtr1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Balearica_regulorum/bBalReg1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Suncus_etruscus/mSunEtr1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Balearica_regulorum/bBalReg1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Suncus_etruscus/mSunEtr1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Balearica_regulorum/bBalReg1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -6784,26 +6803,57 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Suncus_etruscus/mSunEtr1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Balearica_regulorum/bBalReg1/genomic_data/pacbio/ trio: '' - vglId: mSunEtr1 + vglId: bBalReg1 + vgp_phase: phase1 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_017639555.1 + class: Aves,birds + common_name: maguari stork + family: Ciconiidae + hub: vgl + order: Ciconiiformes + scientific_name: Ciconia maguari + status: 8-NCBI + taxon_id: '52777' + techs: + 10X: + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Ciconia_maguari/bCicMag1/genomic_data/10x/ + BN: + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Ciconia_maguari/bCicMag1/genomic_data/bionano/ + HiC: + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Ciconia_maguari/bCicMag1/genomic_data/arima/ + Ilm: + status: 4 + url: '#' + ONT: + status: 4 + url: '#' + PB: + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Ciconia_maguari/bCicMag1/genomic_data/pacbio/ + trio: '' + vglId: bCicMag1 vgp_phase: phase1 - asm: '#' - class: Mammalia,mammals - common_name: Philippine flying lemur - family: Cynocephalidae + class: Reptilia,reptiles + common_name: Florida worm lizard + family: Rhineuridae hub: vgl - order: Dermoptera - scientific_name: Cynocephalus volans - status: 1-DNA_isolation - taxon_id: '110931' + order: Squamata + scientific_name: Rhineura floridana + status: 2-data_progress + taxon_id: '261503' techs: 10X: status: 4 url: '#' BN: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rhineura_floridana/rRhiFlo1/genomic_data/bionano/ HiC: status: 0 url: '#' @@ -6816,27 +6866,28 @@ toc: PB: status: 0 url: '#' - vglId: mCynVol1 + trio: '' + vglId: rRhiFlo1 vgp_phase: phase1 - asm: '#' - class: Amphibia,amphibians - common_name: Fleay's barred frog - family: Myobatrachidae + class: Mammalia,mammals + common_name: gray short-tailed opossum + family: Didelphidae hub: vgl - order: Anura - scientific_name: Mixophyes fleayi - status: 0-data_queued - taxon_id: '000000' + order: Didelphimorphia + scientific_name: Monodelphis domestica + status: 2-data_progress + taxon_id: '13616' techs: 10X: status: 4 url: '#' BN: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Monodelphis_domestica/mMonDom1/genomic_data/bionano/ HiC: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Monodelphis_domestica/mMonDom1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -6844,28 +6895,29 @@ toc: status: 4 url: '#' PB: - status: 0 + status: 2 url: '#' - vglId: aMixFle1 - vgp_phase: phase3 + trio: '' + vglId: mMonDom1 + vgp_phase: phase1 - asm: '#' - class: Aves,birds - common_name: tufted titmouse - family: Paridae + class: Actinopterygii,Bony fishes + common_name: Adriatic sturgeon + family: Acipenseridae hub: vgl - order: Passeriformes - scientific_name: Baeolophus bicolor - status: 1-DNA_isolation - taxon_id: '88114' + order: Acipenseriformes + scientific_name: Acipenser naccarii + status: 2-data_progress + taxon_id: '42330' techs: 10X: status: 4 url: '#' BN: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Acipenser_naccarii/fAciNac1/genomic_data/bionano/ HiC: - status: 0 + status: 1 url: '#' Ilm: status: 4 @@ -6876,27 +6928,28 @@ toc: PB: status: 0 url: '#' - vglId: bBaeBic1 - vgp_phase: phase3 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_016695395.2 - class: Mammalia,mammals - common_name: human - family: Hominidae + trio: '' + vglId: fAciNac1 + vgp_phase: phase4 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_007399415.2 + class: Reptilia,reptiles + common_name: Goodes thornscrub tortoise + family: Testudinidae hub: vgl - order: Primates - scientific_name: Homo sapiens + order: Testudines + scientific_name: Gopherus evgoodei status: 8-NCBI - taxon_id: '9606' + taxon_id: '1825980' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Homo_sapiens/mHomSap3/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Gopherus_evgoodei/rGopEvg1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Homo_sapiens/mHomSap3/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Gopherus_evgoodei/rGopEvg1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Homo_sapiens/mHomSap3/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Gopherus_evgoodei/rGopEvg1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -6905,29 +6958,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Homo_sapiens/mHomSap3/genomic_data/pacbio/ - trio: mHomSap1/mHomSap2 - vglId: mHomSap3 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Gopherus_evgoodei/rGopEvg1/genomic_data/pacbio/ + trio: '' + vglId: rGopEvg1 vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_900747795.4 - class: Actinopterygii,Bony fishes - common_name: reedfish - family: Polypteridae +- asm: '#' + class: Reptilia,reptiles + common_name: eastern musk turtle + family: Kinosternidae hub: vgl - order: Polypteriformes - scientific_name: Erpetoichthys calabaricus - status: 8-NCBI - taxon_id: '27687' + order: Testudines + scientific_name: Sternotherus odoratus + status: 2-data_progress + taxon_id: '142480' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Erpetoichthys_calabaricus/fErpCal1/genomic_data/10x/ + status: 4 + url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Erpetoichthys_calabaricus/fErpCal1/genomic_data/bionano/ + url: '#' HiC: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Erpetoichthys_calabaricus/fErpCal1/genomic_data/arima/ + status: 0 + url: '#' Ilm: status: 4 url: '#' @@ -6935,30 +6988,29 @@ toc: status: 4 url: '#' PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Erpetoichthys_calabaricus/fErpCal1/genomic_data/pacbio/ - trio: '' - vglId: fErpCal1 + status: 0 + url: '#' + vglId: rSteOdo1 vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_007474595.2 - class: Mammalia,mammals - common_name: Canada lynx - family: Felidae - hub: vgl - order: Carnivora - scientific_name: Lynx canadensis +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_017976325.1 + class: Actinopterygii,Bony fishes + common_name: copperband butterflyfish + family: Chaetodontidae + hub: others + order: Chaetodontiformes + scientific_name: Chelmon rostratus status: 8-NCBI - taxon_id: '61383' + taxon_id: '109905' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lynx_canadensis/mLynCan4/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Chelmon_rostratus/fCheRos1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lynx_canadensis/mLynCan4/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Chelmon_rostratus/fCheRos1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lynx_canadensis/mLynCan4/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Chelmon_rostratus/fCheRos1/genomic_data/hic/ Ilm: status: 4 url: '#' @@ -6967,29 +7019,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lynx_canadensis/mLynCan4/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Chelmon_rostratus/fCheRos1/genomic_data/pacbio/ trio: '' - vglId: mLynCan4 + vglId: fCheRos1 vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_014108245.1 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_019393635.1 class: Mammalia,mammals - common_name: Kuhl's pipistrelle - family: Vespertilionidae + common_name: monito del monte + family: Microbiotheriidae hub: others - order: Chiroptera - scientific_name: Pipistrellus kuhlii + order: Microbiotheria + scientific_name: Dromiciops gliroides status: 8-NCBI - taxon_id: '59472' + taxon_id: '33562' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pipistrellus_kuhlii/mPipKuh1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dromiciops_gliroides/mDroGli1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pipistrellus_kuhlii/mPipKuh1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dromiciops_gliroides/mDroGli1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pipistrellus_kuhlii/mPipKuh1/genomic_data/phase/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dromiciops_gliroides/mDroGli1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -6998,50 +7050,19 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pipistrellus_kuhlii/mPipKuh1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dromiciops_gliroides/mDroGli1/genomic_data/pacbio/ trio: '' - vglId: mPipKuh1 - vgp_phase: phase4 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_905171665.1 - class: Actinopterygii,Bony fishes - common_name: Atlantic horse mackerel - family: Carangidae - hub: others - order: Carangiformes - scientific_name: Trachurus trachurus - status: 8-NCBI - taxon_id: '36212' - techs: - 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Trachurus_trachurus/fTraTra1/genomic_data/10x/ - BN: - status: 4 - url: '#' - HiC: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Trachurus_trachurus/fTraTra1/genomic_data/arima/ - Ilm: - status: 4 - url: '#' - ONT: - status: 4 - url: '#' - PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Trachurus_trachurus/fTraTra1/genomic_data/pacbio/ - trio: '' - vglId: fTraTra1 - vgp_phase: phase2 + vglId: mDroGli1 + vgp_phase: phase1 - asm: '#' - class: Aves,birds - common_name: white-throated sparrow - family: Passerellidae + class: Chondrichthyes,cartilaginous fishes + common_name: zebra shark + family: Stegostomatidae hub: vgl - order: Passeriformes - scientific_name: Zonotrichia albicollis + order: Orectolobiformes + scientific_name: Stegostoma tigrinum status: 0-data_queued - taxon_id: '44394' + taxon_id: '000000' techs: 10X: status: 4 @@ -7061,27 +7082,27 @@ toc: PB: status: 0 url: '#' - vglId: bZonAlb1 - vgp_phase: phase3 -- asm: '#' + vglId: sSteTig2 + vgp_phase: phase2 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_008658365.1 class: Aves,birds - common_name: blue jay - family: Corvidae + common_name: razorbill + family: Alcidae hub: vgl - order: Passeriformes - scientific_name: Cyanocitta cristata - status: 1-DNA_isolation - taxon_id: '28727' + order: Charadriiformes + scientific_name: Alca torda + status: 8-NCBI + taxon_id: '28689' techs: 10X: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Alca_torda/bAlcTor1/genomic_data/10x/ BN: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Alca_torda/bAlcTor1/genomic_data/bionano/ HiC: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Alca_torda/bAlcTor1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -7089,29 +7110,30 @@ toc: status: 4 url: '#' PB: - status: 0 - url: '#' - vglId: bCyaCri2 - vgp_phase: phase3 -- asm: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Alca_torda/bAlcTor1/genomic_data/pacbio/ + trio: '' + vglId: bAlcTor1 + vgp_phase: phase2 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_015220075.1 class: Aves,birds - common_name: Common canary - family: Fringillidae + common_name: gyrfalcon + family: Falconidae hub: vgl - order: Passeriformes - scientific_name: Serinus canaria - status: 0-data_queued - taxon_id: '9135' + order: Falconiformes + scientific_name: Falco rusticolus + status: 8-NCBI + taxon_id: '120794' techs: 10X: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Falco_rusticolus/bFalRus1/genomic_data/10x/ BN: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Falco_rusticolus/bFalRus1/genomic_data/bionano/ HiC: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Falco_rusticolus/bFalRus1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -7119,29 +7141,30 @@ toc: status: 4 url: '#' PB: - status: 0 - url: '#' - vglId: bSerCaa1 - vgp_phase: phase3 + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Falco_rusticolus/bFalRus1/genomic_data/pacbio/ + trio: '' + vglId: bFalRus1 + vgp_phase: phase1 - asm: '#' class: Reptilia,reptiles - common_name: European pond turtle - family: Emydidae + common_name: olive python + family: Pythonidae hub: vgl - order: Testudines - scientific_name: Emys orbicularis - status: 3-data_done - taxon_id: '82168' + order: Squamata + scientific_name: Liasis olivaceus + status: 2-data_progress + taxon_id: '283338' techs: 10X: status: 4 url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Emys_orbicularis/rEmyOrb1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Liasis_olivaceus/rLiaOli1/genomic_data/bionano/ HiC: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Emys_orbicularis/rEmyOrb1/genomic_data/arima/ + status: 0 + url: '#' Ilm: status: 4 url: '#' @@ -7149,30 +7172,30 @@ toc: status: 4 url: '#' PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Emys_orbicularis/rEmyOrb1/genomic_data/pacbio/ + status: 0 + url: '#' trio: '' - vglId: rEmyOrb1 - vgp_phase: phase3 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_901709675.1 + vglId: rLiaOli1 + vgp_phase: phase2 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_900700375.2 class: Actinopterygii,Bony fishes - common_name: greater pipefish - family: Syngnathidae - hub: others - order: Syngnathiformes - scientific_name: Syngnathus acus + common_name: denticle herring + family: Denticipitidae + hub: vgl + order: Clupeiformes + scientific_name: Denticeps clupeoides status: 8-NCBI - taxon_id: '161584' + taxon_id: '299321' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Syngnathus_acus/fSynAcu1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Denticeps_clupeoides/fDenClu1/genomic_data/10x/ BN: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Denticeps_clupeoides/fDenClu1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Syngnathus_acus/fSynAcu1/genomic_data/dovetail/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Denticeps_clupeoides/fDenClu1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -7181,29 +7204,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Syngnathus_acus/fSynAcu1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Denticeps_clupeoides/fDenClu1/genomic_data/pacbio/ trio: '' - vglId: fSynAcu1 + vglId: fDenClu1 vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_017639655.2 +- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Apus_apus/bApuApu2/assembly_curated/ class: Aves,birds - common_name: lesser kestrel - family: Falconidae - hub: vgl - order: Falconiformes - scientific_name: Falco naumanni - status: 8-NCBI - taxon_id: '148594' + common_name: common swift + family: Apodidae + hub: others + order: Apodiformes + scientific_name: Apus apus + status: 7-asm_curated + taxon_id: '8895' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Falco_naumanni/bFalNau1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Apus_apus/bApuApu2/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Falco_naumanni/bFalNau1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Apus_apus/bApuApu2/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Falco_naumanni/bFalNau1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Apus_apus/bApuApu2/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -7212,60 +7235,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Falco_naumanni/bFalNau1/genomic_data/pacbio/ - trio: bFalNau2/bFalNau3 - vglId: bFalNau1 - vgp_phase: phase4 -- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Spatula_cyanoptera/bSpaCya1/assembly_vgp_standard_1.5/ - class: Aves,birds - common_name: cinnamon teal - family: Anatidae + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Apus_apus/bApuApu2/genomic_data/pacbio/ + trio: '' + vglId: bApuApu2 + vgp_phase: phase1 +- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Gopherus_flavomarginatus/rGopFla2/assembly_nhgri_trio_1.6/ + class: Reptilia,reptiles + common_name: Mexican gopher tortoise + family: Testudinidae hub: vgl - order: Anseriformes - scientific_name: Spatula cyanoptera - status: 5-asm_done - taxon_id: '75840' + order: Testudines + scientific_name: Gopherus flavomarginatus + status: 6-asm_curation + taxon_id: '286002' techs: 10X: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Gopherus_flavomarginatus/rGopFla2/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Spatula_cyanoptera/bSpaCya1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Gopherus_flavomarginatus/rGopFla2/genomic_data/bionano/ HiC: - status: 4 - url: '#' - Ilm: - status: 4 - url: '#' - ONT: - status: 4 - url: '#' - PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Spatula_cyanoptera/bSpaCya1/genomic_data/pacbio/ - trio: '' - vglId: bSpaCya1 - vgp_phase: phase3 -- asm: '#' - class: Mammalia,mammals - common_name: Botta's pocket gopher - family: Geomyidae - hub: vgl - order: Rodentia - scientific_name: Thomomys bottae - status: 2-data_progress - taxon_id: '10013' - techs: - 10X: - status: 4 - url: '#' - BN: - status: 3 - url: '#' - HiC: - status: 0 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Gopherus_flavomarginatus/rGopFla2/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -7273,29 +7265,30 @@ toc: status: 4 url: '#' PB: - status: 0 - url: '#' - vglId: mThoBot1 - vgp_phase: phase1 + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Gopherus_flavomarginatus/rGopFla2/genomic_data/pacbio/ + trio: rGopFla1/rGopFla3 + vglId: rGopFla2 + vgp_phase: phase4 - asm: '#' - class: Mammalia,mammals - common_name: chimpanzee - family: Hominidae + class: Aves,birds + common_name: Whooping crane + family: Gruidae hub: vgl - order: Primates - scientific_name: Pan troglodytes - status: 0-data_queued - taxon_id: '9598' + order: Gruiformes + scientific_name: Grus americana + status: 4-asm_progress + taxon_id: '9117' techs: 10X: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Grus_americana/bGruAme1/genomic_data/10x/ BN: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Grus_americana/bGruAme1/genomic_data/bionano/ HiC: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Grus_americana/bGruAme1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -7303,29 +7296,30 @@ toc: status: 4 url: '#' PB: - status: 0 - url: '#' - vglId: mPanTro2 - vgp_phase: phase4 -- asm: '#' - class: Mammalia,mammals - common_name: American pika - family: Ochotonidae + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Grus_americana/bGruAme1/genomic_data/pacbio/ + trio: bGruAme2/bGruAme3 + vglId: bGruAme1 + vgp_phase: phase3 +- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Haemorhous_mexicanus/bHaeMex1/assembly_vgp_standard_2.0/ + class: Aves,birds + common_name: house finch + family: Fringillidae hub: vgl - order: Lagomorpha - scientific_name: Ochotona princeps - status: 2-data_progress - taxon_id: '9978' + order: Passeriformes + scientific_name: Haemorhous mexicanus + status: 5-asm_done + taxon_id: '30427' techs: 10X: status: 4 url: '#' BN: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Haemorhous_mexicanus/bHaeMex1/genomic_data/bionano/ HiC: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Haemorhous_mexicanus/bHaeMex1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -7333,29 +7327,30 @@ toc: status: 4 url: '#' PB: - status: 2 - url: '#' - vglId: mOchPri1 - vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_009819655.1 - class: Aves,birds - common_name: blackcap - family: Sylviidae - hub: vgl - order: Passeriformes - scientific_name: Sylvia atricapilla + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Haemorhous_mexicanus/bHaeMex1/genomic_data/pacbio/ + trio: '' + vglId: bHaeMex1 + vgp_phase: phase3 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_901001135.2 + class: Amphibia,amphibians + common_name: two-lined caecilian + family: Rhinatrematidae + hub: others + order: Apoda + scientific_name: Rhinatrema bivittatum status: 8-NCBI - taxon_id: '48155' + taxon_id: '194408' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sylvia_atricapilla/bSylAtr1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rhinatrema_bivittatum/aRhiBiv1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sylvia_atricapilla/bSylAtr1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rhinatrema_bivittatum/aRhiBiv1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sylvia_atricapilla/bSylAtr1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rhinatrema_bivittatum/aRhiBiv1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -7364,59 +7359,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sylvia_atricapilla/bSylAtr1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rhinatrema_bivittatum/aRhiBiv1/genomic_data/pacbio/ trio: '' - vglId: bSylAtr1 - vgp_phase: phase4 -- asm: '#' - class: Chondrichthyes,cartilaginous fishes - common_name: sharpnose sevengill shark - family: Hexanchidae - hub: vgl - order: Hexanchiformes - scientific_name: Heptranchias perlo - status: 2-data_progress - taxon_id: '212740' - techs: - 10X: - status: 4 - url: '#' - BN: - status: 2 - url: '#' - HiC: - status: 0 - url: '#' - Ilm: - status: 4 - url: '#' - ONT: - status: 4 - url: '#' - PB: - status: 0 - url: '#' - vglId: sHepPer1 + vglId: aRhiBiv1 vgp_phase: phase1 -- asm: '#' +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_014176215.1 class: Mammalia,mammals - common_name: grey whale - family: Eschrichtiidae + common_name: Egyptian rousette + family: Pteropodidae hub: vgl - order: Artiodactyla - scientific_name: Eschrichtius robustus - status: 2-data_progress - taxon_id: '9764' + order: Chiroptera + scientific_name: Rousettus aegyptiacus + status: 8-NCBI + taxon_id: '9407' techs: 10X: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rousettus_aegyptiacus/mRouAeg1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Eschrichtius_robustus/mEscRob1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rousettus_aegyptiacus/mRouAeg1/genomic_data/bionano/ HiC: status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rousettus_aegyptiacus/mRouAeg1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -7424,30 +7389,30 @@ toc: status: 4 url: '#' PB: - status: 2 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rousettus_aegyptiacus/mRouAeg1/genomic_data/pacbio/ trio: '' - vglId: mEscRob1 + vglId: mRouAeg1 vgp_phase: phase2 -- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Trogon_surrucura/bTroSur1/assembly_curated/ +- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pelecanus_crispus/bPelCri1/assembly_vgp_standard_2.1/ class: Aves,birds - common_name: Suruca trogon - family: Trogonidae - hub: vgl - order: Trogoniformes - scientific_name: Trogon surrucura - status: 7-asm_curated - taxon_id: '297711' + common_name: Dalmatian pelican + family: Pelecanidae + hub: others + order: Pelecaniformes + scientific_name: Pelecanus crispus + status: 5-asm_done + taxon_id: '36300' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Trogon_surrucura/bTroSur1/genomic_data/10x/ + status: 4 + url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Trogon_surrucura/bTroSur1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pelecanus_crispus/bPelCri1/genomic_data/bionano/ HiC: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Trogon_surrucura/bTroSur1/genomic_data/arima/ + status: 4 + url: '#' Ilm: status: 4 url: '#' @@ -7456,29 +7421,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Trogon_surrucura/bTroSur1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pelecanus_crispus/bPelCri1/genomic_data/pacbio/ trio: '' - vglId: bTroSur1 + vglId: bPelCri1 vgp_phase: phase1 -- asm: '#' - class: Amphibia,amphibians - common_name: Puerto Rican coqui - family: Eleutherodactylidae - hub: vgl - order: Anura - scientific_name: Eleutherodactylus coqui - status: 2-data_progress - taxon_id: '57060' +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_902148855.1 + class: Actinopterygii,Bony fishes + common_name: orbiculate cardinalfish + family: Apogonidae + hub: others + order: Kurtiformes + scientific_name: Sphaeramia orbicularis + status: 8-NCBI + taxon_id: '375764' techs: 10X: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sphaeramia_orbicularis/fSphaOr1/genomic_data/10x/ BN: - status: 2 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sphaeramia_orbicularis/fSphaOr1/genomic_data/bionano/ HiC: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sphaeramia_orbicularis/fSphaOr1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -7486,29 +7451,30 @@ toc: status: 4 url: '#' PB: - status: 0 - url: '#' - vglId: aEleCoq1 + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sphaeramia_orbicularis/fSphaOr1/genomic_data/pacbio/ + trio: '' + vglId: fSphaOr1 vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_015237465.2 - class: Reptilia,reptiles - common_name: Green sea turtle - family: Cheloniidae - hub: others - order: Testudines - scientific_name: Chelonia mydas - status: 8-NCBI - taxon_id: '8469' +- asm: '#' + class: Aves,birds + common_name: song sparrow + family: Passerellidae + hub: vgl + order: Passeriformes + scientific_name: Melospiza georgiana + status: 2-data_progress + taxon_id: '44398' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Chelonia_mydas/rCheMyd1/genomic_data/10x/ + status: 4 + url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Chelonia_mydas/rCheMyd1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Melospiza_georgiana/bMelGeo1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Chelonia_mydas/rCheMyd1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Melospiza_georgiana/bMelGeo1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -7516,30 +7482,30 @@ toc: status: 4 url: '#' PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Chelonia_mydas/rCheMyd1/genomic_data/pacbio/ + status: 2 + url: '#' trio: '' - vglId: rCheMyd1 - vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_900634775.2 + vglId: bMelGeo1 + vgp_phase: phase4 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_013358685.1 class: Actinopterygii,Bony fishes - common_name: blunt-snouted clingfish - family: Gobiesocidae + common_name: warty frogfish + family: Antennariidae hub: others - order: Blenniiformes - scientific_name: Gouania willdenowi + order: Lophiiformes + scientific_name: Antennarius maculatus status: 8-NCBI - taxon_id: '441366' + taxon_id: '882753' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Gouania_willdenowi/fGouWil2/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Antennarius_maculatus/fAntMac1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Gouania_willdenowi/fGouWil2/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Antennarius_maculatus/fAntMac1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Gouania_willdenowi/fGouWil2/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Antennarius_maculatus/fAntMac1/genomic_data/phase/ Ilm: status: 4 url: '#' @@ -7548,28 +7514,28 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Gouania_willdenowi/fGouWil2/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Antennarius_maculatus/fAntMac1/genomic_data/pacbio/ trio: '' - vglId: fGouWil2 + vglId: fAntMac1 vgp_phase: phase1 - asm: '#' - class: Mammalia,mammals - common_name: slow loris - family: Lorisidae + class: Amphibia,amphibians + common_name: fire salamander + family: Salamandridae hub: vgl - order: Primates - scientific_name: Nycticebus coucang + order: Caudata + scientific_name: Salamandra salamandra status: 2-data_progress - taxon_id: '9470' + taxon_id: '57571' techs: 10X: status: 4 url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Nycticebus_coucang/mNycCou1/genomic_data/bionano/ + url: '#' HiC: - status: 1 + status: 0 url: '#' Ilm: status: 4 @@ -7578,20 +7544,19 @@ toc: status: 4 url: '#' PB: - status: 2 + status: 0 url: '#' - trio: '' - vglId: mNycCou1 + vglId: aSalSal1 vgp_phase: phase1 - asm: '#' - class: Aves,birds - common_name: House wren - family: Certhiidae + class: Mammalia,mammals + common_name: pig-tailed macaque + family: Cercopithecidae hub: vgl - order: Passeriformes - scientific_name: Troglodytes aedon + order: Primates + scientific_name: Macaca nemestrina status: 0-data_queued - taxon_id: '58211' + taxon_id: '9545' techs: 10X: status: 4 @@ -7611,27 +7576,27 @@ toc: PB: status: 0 url: '#' - vglId: bTroAed1 + vglId: mMacNem1 vgp_phase: phase2 -- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Falco_cherrug/bFalChe1/assembly_vgp_standard_2.0/ - class: Aves,birds - common_name: Saker falcon - family: Falconidae +- asm: '#' + class: Actinopterygii,Bony fishes + common_name: rainbow smelt + family: Osmeridae hub: vgl - order: Falconiformes - scientific_name: Falco cherrug - status: 6-asm_curation - taxon_id: '345164' + order: Osmeriformes + scientific_name: Osmerus mordax + status: 2-data_progress + taxon_id: '8014' techs: 10X: status: 4 url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Falco_cherrug/bFalChe1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Osmerus_mordax/fOsmMor3/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Falco_cherrug/bFalChe1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Osmerus_mordax/fOsmMor3/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -7639,30 +7604,30 @@ toc: status: 4 url: '#' PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Falco_cherrug/bFalChe1/genomic_data/pacbio/ + status: 2 + url: '#' trio: '' - vglId: bFalChe1 - vgp_phase: phase4 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_900324485.3 - class: Actinopterygii,Bony fishes - common_name: zig-zag eel - family: Mastacembelidae + vglId: fOsmMor3 + vgp_phase: phase1 +- asm: '#' + class: Aves,birds + common_name: House wren + family: Certhiidae hub: vgl - order: Synbranchiformes - scientific_name: Mastacembelus armatus - status: 8-NCBI - taxon_id: '205130' + order: Passeriformes + scientific_name: Troglodytes aedon + status: 0-data_queued + taxon_id: '58211' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Mastacembelus_armatus/fMasArm1/genomic_data/10x/ + status: 4 + url: '#' BN: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Mastacembelus_armatus/fMasArm1/genomic_data/bionano/ + status: 0 + url: '#' HiC: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Mastacembelus_armatus/fMasArm1/genomic_data/arima/ + status: 0 + url: '#' Ilm: status: 4 url: '#' @@ -7670,20 +7635,19 @@ toc: status: 4 url: '#' PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Mastacembelus_armatus/fMasArm1/genomic_data/pacbio/ - trio: '' - vglId: fMasArm1 - vgp_phase: phase1 + status: 0 + url: '#' + vglId: bTroAed1 + vgp_phase: phase2 - asm: '#' class: Aves,birds - common_name: American robin - family: Turdidae + common_name: white-breasted nuthatch + family: Sittidae hub: vgl order: Passeriformes - scientific_name: Turdus migratorius + scientific_name: Sitta carolinensis status: 0-data_queued - taxon_id: '9188' + taxon_id: '50250' techs: 10X: status: 4 @@ -7703,27 +7667,27 @@ toc: PB: status: 0 url: '#' - vglId: bTurMig1 - vgp_phase: phase4 -- asm: '#' + vglId: bSitCar1 + vgp_phase: phase2 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_900634625.2 class: Actinopterygii,Bony fishes - common_name: lesser salmon catfish - family: Ariidae + common_name: Indian glassy fish + family: Ambassidae hub: vgl - order: Siluriformes - scientific_name: Neoarius graeffei - status: 2-data_progress - taxon_id: '443677' + order: Ovalentaria + scientific_name: Parambassis ranga + status: 8-NCBI + taxon_id: '210632' techs: 10X: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Parambassis_ranga/fParRan2/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Neoarius_graeffei/fNeoGra1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Parambassis_ranga/fParRan2/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Neoarius_graeffei/fNeoGra1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Parambassis_ranga/fParRan2/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -7731,30 +7695,30 @@ toc: status: 4 url: '#' PB: - status: 2 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Parambassis_ranga/fParRan2/genomic_data/pacbio/ trio: '' - vglId: fNeoGra1 + vglId: fParRan2 vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_903684865.1 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_905171665.1 class: Actinopterygii,Bony fishes - common_name: zebrafish - family: Danionidae + common_name: Atlantic horse mackerel + family: Carangidae hub: others - order: Cypriniformes - scientific_name: Danio rerio + order: Carangiformes + scientific_name: Trachurus trachurus status: 8-NCBI - taxon_id: '7955' + taxon_id: '36212' techs: 10X: status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Trachurus_trachurus/fTraTra1/genomic_data/10x/ BN: - status: 1 + status: 4 url: '#' HiC: status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Trachurus_trachurus/fTraTra1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -7763,29 +7727,29 @@ toc: url: '#' PB: status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Trachurus_trachurus/fTraTra1/genomic_data/pacbio/ trio: '' - vglId: fDreABH1 - vgp_phase: phase1 -- asm: '#' - class: Amphibia,amphibians - common_name: eastern narrow-mouthed toad - family: Microhylidae - hub: vgl - order: Anura - scientific_name: Gastrophryne carolinensis - status: 2-data_progress - taxon_id: '8429' + vglId: fTraTra1 + vgp_phase: phase2 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_907165065.1 + class: Aves,birds + common_name: Eurasian nightjar + family: Caprimulgidae + hub: others + order: Caprimulgiformes + scientific_name: Caprimulgus europaeus + status: 8-NCBI + taxon_id: '111811' techs: 10X: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Caprimulgus_europaeus/bCapEur3/genomic_data/10x/ BN: - status: 3 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Caprimulgus_europaeus/bCapEur3/genomic_data/bionano/ HiC: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Caprimulgus_europaeus/bCapEur3/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -7793,29 +7757,30 @@ toc: status: 4 url: '#' PB: - status: 2 - url: '#' - vglId: aGasCar1 + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Caprimulgus_europaeus/bCapEur3/genomic_data/pacbio/ + trio: '' + vglId: bCapEur3 vgp_phase: phase1 -- asm: '#' - class: Amphibia,amphibians - common_name: fire salamander - family: Salamandridae +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_007474595.2 + class: Mammalia,mammals + common_name: Canada lynx + family: Felidae hub: vgl - order: Caudata - scientific_name: Salamandra salamandra - status: 2-data_progress - taxon_id: '57571' + order: Carnivora + scientific_name: Lynx canadensis + status: 8-NCBI + taxon_id: '61383' techs: 10X: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lynx_canadensis/mLynCan4/genomic_data/10x/ BN: status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lynx_canadensis/mLynCan4/genomic_data/bionano/ HiC: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lynx_canadensis/mLynCan4/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -7823,29 +7788,30 @@ toc: status: 4 url: '#' PB: - status: 0 - url: '#' - vglId: aSalSal1 + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lynx_canadensis/mLynCan4/genomic_data/pacbio/ + trio: '' + vglId: mLynCan4 vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_003369685.2 - class: Mammalia,mammals - common_name: cattle - family: Bovidae - hub: others - order: Artiodactyla - scientific_name: Bos taurus +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_009650955.1 + class: Aves,birds + common_name: New Caledonian crow + family: Corvidae + hub: vgl + order: Passeriformes + scientific_name: Corvus moneduloides status: 8-NCBI - taxon_id: '9913' + taxon_id: '1196302' techs: 10X: status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Corvus_moneduloides/bCorMon1/genomic_data/10x/ BN: status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Corvus_moneduloides/bCorMon1/genomic_data/bionano/ HiC: status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Corvus_moneduloides/bCorMon1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -7854,29 +7820,29 @@ toc: url: '#' PB: status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Corvus_moneduloides/bCorMon1/genomic_data/pacbio/ trio: '' - vglId: mBosTau1 - vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_009769545.1 - class: Actinopterygii,Bony fishes - common_name: lumpfish - family: Cyclopteridae + vglId: bCorMon1 + vgp_phase: phase4 +- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Diceros_bicornis/mDicBic1/assembly_curated/ + class: Mammalia,mammals + common_name: black rhinoceros + family: Rhinocerotidae hub: vgl - order: Scorpaeniformes - scientific_name: Cyclopterus lumpus - status: 8-NCBI - taxon_id: '8103' + order: Perissodactyla + scientific_name: Diceros bicornis + status: 7-asm_curated + taxon_id: '9805' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cyclopterus_lumpus/fCycLum1/genomic_data/10x/ + status: 4 + url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cyclopterus_lumpus/fCycLum1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Diceros_bicornis/mDicBic1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cyclopterus_lumpus/fCycLum1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Diceros_bicornis/mDicBic1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -7885,29 +7851,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cyclopterus_lumpus/fCycLum1/genomic_data/pacbio/ - trio: '' - vglId: fCycLum1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Diceros_bicornis/mDicBic1/genomic_data/pacbio/ + trio: mDicBic2/mDicBic3 + vglId: mDicBic1 vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_009829155.1 - class: Mammalia,mammals - common_name: ermine - family: Mustelidae +- asm: '#' + class: Aves,birds + common_name: common myna + family: Sturnidae hub: vgl - order: Carnivora - scientific_name: Mustela erminea - status: 8-NCBI - taxon_id: '36723' + order: Passeriformes + scientific_name: Acridotheres tristis + status: 4-asm_progress + taxon_id: '279927' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Mustela_erminea/mMusErm1/genomic_data/10x/ + status: 4 + url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Mustela_erminea/mMusErm1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Acridotheres_tristis/bAcrTri1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Mustela_erminea/mMusErm1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Acridotheres_tristis/bAcrTri1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -7916,60 +7882,60 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Mustela_erminea/mMusErm1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Acridotheres_tristis/bAcrTri1/genomic_data/pacbio/ trio: '' - vglId: mMusErm1 + vglId: bAcrTri1 vgp_phase: phase3 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_009873245.2 - class: Mammalia,mammals - common_name: Blue whale - family: Balaenopteridae +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_014839835.1 + class: Aves,birds + common_name: Downy woodpecker + family: Picidae hub: others - order: Artiodactyla - scientific_name: Balaenoptera musculus + order: Piciformes + scientific_name: Dryobates pubescens status: 8-NCBI - taxon_id: '9771' + taxon_id: '118200' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Balaenoptera_musculus/mBalMus1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dryobates_pubescens/bDryPub1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Balaenoptera_musculus/mBalMus1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dryobates_pubescens/bDryPub1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Balaenoptera_musculus/mBalMus1/genomic_data/dovetail/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dryobates_pubescens/bDryPub1/genomic_data/arima/ Ilm: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Balaenoptera_musculus/mBalMus1/genomic_data/illumina/ + status: 4 + url: '#' ONT: status: 4 url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Balaenoptera_musculus/mBalMus1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dryobates_pubescens/bDryPub1/genomic_data/pacbio/ trio: '' - vglId: mBalMus1 + vglId: bDryPub1 vgp_phase: phase2 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_900700375.2 - class: Actinopterygii,Bony fishes - common_name: denticle herring - family: Denticipitidae +- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Porphyrio_hochstetteri/bPorHoc1/assembly_curated/ + class: Aves,birds + common_name: South Island takahe + family: Rallidae hub: vgl - order: Clupeiformes - scientific_name: Denticeps clupeoides - status: 8-NCBI - taxon_id: '299321' + order: Gruiformes + scientific_name: Porphyrio hochstetteri + status: 7-asm_curated + taxon_id: '439704' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Denticeps_clupeoides/fDenClu1/genomic_data/10x/ + status: 4 + url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Denticeps_clupeoides/fDenClu1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Porphyrio_hochstetteri/bPorHoc1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Denticeps_clupeoides/fDenClu1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Porphyrio_hochstetteri/bPorHoc1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -7978,60 +7944,60 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Denticeps_clupeoides/fDenClu1/genomic_data/pacbio/ - trio: '' - vglId: fDenClu1 - vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_011100535.2 - class: Mammalia,mammals - common_name: white-tufted-ear marmoset - family: Cebidae + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Porphyrio_hochstetteri/bPorHoc1/genomic_data/pacbio/ + trio: bPorHoc2/bPorHoc3 + vglId: bPorHoc1 + vgp_phase: phase2 +- asm: '#' + class: Chondrichthyes,cartilaginous fishes + common_name: gold dust stingray + family: Potamotrygonidae hub: vgl - order: Primates - scientific_name: Callithrix jacchus - status: 8-NCBI - taxon_id: '9483' + order: Myliobatiformes + scientific_name: Potamotrygon marinae + status: 4-asm_progress + taxon_id: '000000' techs: 10X: - status: 1 + status: 4 url: '#' BN: status: 1 url: '#' HiC: status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Potamotrygon_marinae/sPotMar1/genomic_data/arima/ Ilm: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Potamotrygon_marinae/sPotMar1/genomic_data/illumina/ ONT: status: 4 url: '#' PB: status: 1 - url: '#' - trio: mCalJac2/mCalJac3 - vglId: mCalJac1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Potamotrygon_marinae/sPotMar1/genomic_data/pacbio/ + trio: '' + vglId: sPotMar1 vgp_phase: phase1 -- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Harpia_harpyja/bHarHar1/assembly_vgp_standard_2.0/ +- asm: '#' class: Aves,birds - common_name: Harpy eagle - family: Accipitridae + common_name: black-legged kittiwake + family: Laridae hub: vgl - order: Falconiformes - scientific_name: Harpia harpyja - status: 6-asm_curation - taxon_id: '202280' + order: Charadriiformes + scientific_name: Rissa tridactyla + status: 2-data_progress + taxon_id: '75485' techs: 10X: status: 4 url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Harpia_harpyja/bHarHar1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rissa_tridactyla/bRisTri1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Harpia_harpyja/bHarHar1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rissa_tridactyla/bRisTri1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -8039,51 +8005,51 @@ toc: status: 4 url: '#' PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Harpia_harpyja/bHarHar1/genomic_data/pacbio/ + status: 2 + url: '#' trio: '' - vglId: bHarHar1 + vglId: bRisTri1 vgp_phase: phase3 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_910591455.1 - class: Actinopterygii,Bony fishes - common_name: rock gunnel - family: Pholidae - hub: others - order: Perciformes - scientific_name: Pholis gunnellus - status: 8-NCBI - taxon_id: '56726' +- asm: '#' + class: Mammalia,mammals + common_name: European shrew + family: Soricidae + hub: vgl + order: Eulipotyphla + scientific_name: Sorex araneus + status: 3-data_done + taxon_id: '42254' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pholis_gunnellus/fPhoGun1/genomic_data/10x/ + status: 4 + url: '#' BN: status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sorex_araneus/mSorAra1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pholis_gunnellus/fPhoGun1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sorex_araneus/mSorAra1/genomic_data/arima/ Ilm: - status: 1 + status: 4 url: '#' ONT: - status: 1 + status: 4 url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pholis_gunnellus/fPhoGun1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sorex_araneus/mSorAra1/genomic_data/pacbio/ trio: '' - vglId: fPhoGun1 - vgp_phase: phase2 + vglId: mSorAra1 + vgp_phase: phase3 - asm: '#' class: Aves,birds - common_name: blue jay - family: Corvidae + common_name: white-throated sparrow + family: Passerellidae hub: vgl order: Passeriformes - scientific_name: Cyanocitta cristata + scientific_name: Zonotrichia albicollis status: 0-data_queued - taxon_id: '28727' + taxon_id: '44394' techs: 10X: status: 4 @@ -8103,27 +8069,27 @@ toc: PB: status: 0 url: '#' - vglId: bCyaCri1 - vgp_phase: phase4 -- asm: '#' - class: Reptilia,reptiles - common_name: tarantolino - family: Sphaerodactylidae + vglId: bZonAlb1 + vgp_phase: phase3 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_900747795.4 + class: Actinopterygii,Bony fishes + common_name: reedfish + family: Polypteridae hub: vgl - order: Squamata - scientific_name: Euleptes europaea - status: 2-data_progress - taxon_id: '460621' + order: Polypteriformes + scientific_name: Erpetoichthys calabaricus + status: 8-NCBI + taxon_id: '27687' techs: 10X: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Erpetoichthys_calabaricus/fErpCal1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Euleptes_europaea/rEulEur1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Erpetoichthys_calabaricus/fErpCal1/genomic_data/bionano/ HiC: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Erpetoichthys_calabaricus/fErpCal1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -8131,30 +8097,30 @@ toc: status: 4 url: '#' PB: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Erpetoichthys_calabaricus/fErpCal1/genomic_data/pacbio/ trio: '' - vglId: rEulEur1 + vglId: fErpCal1 vgp_phase: phase1 - asm: '#' - class: Actinopterygii,Bony fishes - common_name: longfin smelt - family: Osmeridae + class: Aves,birds + common_name: Seychelles magpie-robin + family: Muscicapidae hub: vgl - order: Osmeriformes - scientific_name: Spirinchus thaleichthys + order: Passeriformes + scientific_name: Copsychus sechellarum status: 2-data_progress - taxon_id: '260508' + taxon_id: '797021' techs: 10X: status: 4 url: '#' BN: - status: 0 + status: 2 url: '#' HiC: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Spirinchus_thaleichthys/fSpiTha1/genomic_data/arima/ + status: 0 + url: '#' Ilm: status: 4 url: '#' @@ -8162,27 +8128,57 @@ toc: status: 4 url: '#' PB: - status: 2 + status: 0 url: '#' - trio: '' - vglId: fSpiTha1 - vgp_phase: phase3 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_009819775.1 + vglId: bCopSec1 + vgp_phase: phase2 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_015227805.1 class: Aves,birds - common_name: American flamingo - family: Phoenicopteridae + common_name: Barn swallow + family: Hirundinidae hub: vgl - order: Phoenicopteriformes - scientific_name: Phoenicopterus ruber + order: Passeriformes + scientific_name: Hirundo rustica status: 8-NCBI - taxon_id: '9217' + taxon_id: '43150' techs: 10X: status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Hirundo_rustica/bHirRus1/genomic_data/10x/ BN: status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Hirundo_rustica/bHirRus1/genomic_data/bionano/ + HiC: + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Hirundo_rustica/bHirRus1/genomic_data/arima/ + Ilm: + status: 4 + url: '#' + ONT: + status: 4 + url: '#' + PB: + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Hirundo_rustica/bHirRus1/genomic_data/pacbio/ + trio: '' + vglId: bHirRus1 + vgp_phase: phase2 +- asm: '#' + class: Mammalia,mammals + common_name: Blainville's beaked whale + family: Ziphiidae + hub: vgl + order: Artiodactyla + scientific_name: Mesoplodon densirostris + status: 3-data_done + taxon_id: '48708' + techs: + 10X: + status: 4 url: '#' + BN: + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Mesoplodon_densirostris/mMesDen1/genomic_data/bionano/ HiC: status: 1 url: '#' @@ -8194,29 +8190,29 @@ toc: url: '#' PB: status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Mesoplodon_densirostris/mMesDen1/genomic_data/pacbio/ trio: '' - vglId: bPhoRub1 - vgp_phase: phase1 -- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Hemiprocne_comata/bHemCom1/assembly_curated/ - class: Aves,birds - common_name: whiskered treeswift - family: Apodidae + vglId: mMesDen1 + vgp_phase: phase2 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_009829155.1 + class: Mammalia,mammals + common_name: ermine + family: Mustelidae hub: vgl - order: Apodiformes - scientific_name: Hemiprocne comata - status: 7-asm_curated - taxon_id: '243314' + order: Carnivora + scientific_name: Mustela erminea + status: 8-NCBI + taxon_id: '36723' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Hemiprocne_comata/bHemCom1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Mustela_erminea/mMusErm1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Hemiprocne_comata/bHemCom1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Mustela_erminea/mMusErm1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Hemiprocne_comata/bHemCom1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Mustela_erminea/mMusErm1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -8225,29 +8221,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Hemiprocne_comata/bHemCom1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Mustela_erminea/mMusErm1/genomic_data/pacbio/ trio: '' - vglId: bHemCom1 - vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_901000725.3 + vglId: mMusErm1 + vgp_phase: phase3 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_900324485.3 class: Actinopterygii,Bony fishes - common_name: torafugu - family: Tetraodontidae + common_name: zig-zag eel + family: Mastacembelidae hub: vgl - order: Tetraodontiformes - scientific_name: Takifugu rubripes + order: Synbranchiformes + scientific_name: Mastacembelus armatus status: 8-NCBI - taxon_id: '31033' + taxon_id: '205130' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Takifugu_rubripes/fTakRub1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Mastacembelus_armatus/fMasArm1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Takifugu_rubripes/fTakRub1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Mastacembelus_armatus/fMasArm1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Takifugu_rubripes/fTakRub1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Mastacembelus_armatus/fMasArm1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -8256,29 +8252,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Takifugu_rubripes/fTakRub1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Mastacembelus_armatus/fMasArm1/genomic_data/pacbio/ trio: '' - vglId: fTakRub1 + vglId: fMasArm1 vgp_phase: phase1 -- asm: '#' +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_900964775.1 class: Actinopterygii,Bony fishes - common_name: red shiner - family: Leuciscidae - hub: vgl - order: Cypriniformes - scientific_name: Cyprinella lutrensis - status: 0-data_queued - taxon_id: '28791' + common_name: Asian bonytongue + family: Osteoglossidae + hub: others + order: Osteoglossiformes + scientific_name: Scleropages formosus + status: 8-NCBI + taxon_id: '113540' techs: 10X: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Scleropages_formosus/fSclFor1/genomic_data/10x/ BN: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Scleropages_formosus/fSclFor1/genomic_data/bionano/ HiC: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Scleropages_formosus/fSclFor1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -8286,29 +8282,30 @@ toc: status: 4 url: '#' PB: - status: 0 - url: '#' - vglId: fCypLut1 - vgp_phase: phase2 -- asm: '#' - class: Reptilia,reptiles - common_name: Aeolian wall lizard - family: Lacertidae - hub: vgl - order: Squamata - scientific_name: Podarcis raffonei - status: 4-asm_progress - taxon_id: '65483' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Scleropages_formosus/fSclFor1/genomic_data/pacbio/ + trio: '' + vglId: fSclFor1 + vgp_phase: phase1 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_003957555.1 + class: Aves,birds + common_name: Anna's hummingbird + family: Trochilidae + hub: others + order: Apodiformes + scientific_name: Calypte anna + status: 8-NCBI + taxon_id: '9244' techs: 10X: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Calypte_anna/bCalAnn1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Podarcis_raffonei/rPodRaf1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Calypte_anna/bCalAnn1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Podarcis_raffonei/rPodRaf1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Calypte_anna/bCalAnn1/genomic_data/phase/ Ilm: status: 4 url: '#' @@ -8317,29 +8314,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Podarcis_raffonei/rPodRaf1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Calypte_anna/bCalAnn1/genomic_data/pacbio/ trio: '' - vglId: rPodRaf1 - vgp_phase: phase3 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_003957565.2 - class: Aves,birds - common_name: zebra finch - family: Estrildidae + vglId: bCalAnn1 + vgp_phase: phase1 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_902713615.2 + class: Chondrichthyes,cartilaginous fishes + common_name: smaller spotted catshark + family: Scyliorhinidae hub: vgl - order: Passeriformes - scientific_name: Taeniopygia guttata + order: Carcharhiniformes + scientific_name: Scyliorhinus canicula status: 8-NCBI - taxon_id: '59729' + taxon_id: '7830' techs: 10X: status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Scyliorhinus_canicula/sScyCan1/genomic_data/10x/ BN: status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Scyliorhinus_canicula/sScyCan1/genomic_data/bionano/ HiC: status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Scyliorhinus_canicula/sScyCan1/genomic_data/baylor-hic/ Ilm: status: 4 url: '#' @@ -8348,24 +8345,25 @@ toc: url: '#' PB: status: 1 - url: '#' - vglId: bTaeGut1 - vgp_phase: other + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Scyliorhinus_canicula/sScyCan1/genomic_data/pacbio/ + trio: '' + vglId: sScyCan1 + vgp_phase: phase1 - asm: '#' - class: Enteropneusta,jawless,Agnatha - common_name: acorn worm - family: Harrimaniidae + class: Aves,birds + common_name: chipping sparrow + family: Passerellidae hub: vgl - order: Enteropneusta - scientific_name: Saccoglossus kowalevskii - status: 2-data_progress - taxon_id: '10224' + order: Passeriformes + scientific_name: Spizella passerina + status: 0-data_queued + taxon_id: '40210' techs: 10X: status: 4 url: '#' BN: - status: 2 + status: 0 url: '#' HiC: status: 0 @@ -8379,27 +8377,27 @@ toc: PB: status: 0 url: '#' - vglId: kSacKow2 - vgp_phase: phase2 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_009764475.2 - class: Chondrichthyes,cartilaginous fishes - common_name: smalltooth sawfish - family: Pristidae + vglId: bSpiPas1 + vgp_phase: phase3 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_009819655.1 + class: Aves,birds + common_name: blackcap + family: Sylviidae hub: vgl - order: Rhinopristiformes - scientific_name: Pristis pectinata + order: Passeriformes + scientific_name: Sylvia atricapilla status: 8-NCBI - taxon_id: '685728' + taxon_id: '48155' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pristis_pectinata/sPriPec2/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sylvia_atricapilla/bSylAtr1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pristis_pectinata/sPriPec2/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sylvia_atricapilla/bSylAtr1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pristis_pectinata/sPriPec2/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sylvia_atricapilla/bSylAtr1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -8408,29 +8406,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pristis_pectinata/sPriPec2/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sylvia_atricapilla/bSylAtr1/genomic_data/pacbio/ trio: '' - vglId: sPriPec2 - vgp_phase: phase1 -- asm: '#' - class: Aves,birds - common_name: red-winged blackbird - family: Icteridae - hub: vgl - order: Passeriformes - scientific_name: Agelaius phoeniceus - status: 1-DNA_isolation - taxon_id: '39638' + vglId: bSylAtr1 + vgp_phase: phase4 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_902500255.1 + class: Actinopterygii,Bony fishes + common_name: prehistoric monster fish + family: Batrachoididae + hub: others + order: Batrachoidiformes + scientific_name: Thalassophryne amazonica + status: 8-NCBI + taxon_id: '390379' techs: 10X: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Thalassophryne_amazonica/fThaAma1/genomic_data/10x/ BN: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Thalassophryne_amazonica/fThaAma1/genomic_data/bionano/ HiC: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Thalassophryne_amazonica/fThaAma1/genomic_data/dovetail/ Ilm: status: 4 url: '#' @@ -8438,29 +8436,30 @@ toc: status: 4 url: '#' PB: - status: 0 - url: '#' - vglId: bAgePho1 - vgp_phase: phase3 -- asm: '#' - class: Actinopterygii,Bony fishes - common_name: midwater eelpout - family: Zoarcidae - hub: vgl - order: Perciformes - scientific_name: Melanostigma pammelas - status: 2-data_progress - taxon_id: '557412' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Thalassophryne_amazonica/fThaAma1/genomic_data/pacbio/ + trio: '' + vglId: fThaAma1 + vgp_phase: phase1 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_903797595.2 + class: Aves,birds + common_name: European robin + family: Turdidae + hub: others + order: Passeriformes + scientific_name: Erithacus rubecula + status: 8-NCBI + taxon_id: '37610' techs: 10X: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Erithacus_rubecula/bEriRub2/genomic_data/10x/ BN: - status: 0 + status: 4 url: '#' HiC: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Erithacus_rubecula/bEriRub2/genomic_data/dovetail/ Ilm: status: 4 url: '#' @@ -8469,28 +8468,29 @@ toc: url: '#' PB: status: 1 - url: '#' - vglId: fMelPam1 - vgp_phase: phase2 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_009764595.1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Erithacus_rubecula/bEriRub2/genomic_data/pacbio/ + trio: '' + vglId: bEriRub2 + vgp_phase: phase3 +- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Harpia_harpyja/bHarHar1/assembly_vgp_standard_2.0/ class: Aves,birds - common_name: common yellowthroat - family: Parulidae + common_name: Harpy eagle + family: Accipitridae hub: vgl - order: Passeriformes - scientific_name: Geothlypis trichas - status: 8-NCBI - taxon_id: '135433' + order: Falconiformes + scientific_name: Harpia harpyja + status: 6-asm_curation + taxon_id: '202280' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Geothlypis_trichas/bGeoTri1/genomic_data/10x/ + status: 4 + url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Geothlypis_trichas/bGeoTri1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Harpia_harpyja/bHarHar1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Geothlypis_trichas/bGeoTri1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Harpia_harpyja/bHarHar1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -8499,10 +8499,10 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Geothlypis_trichas/bGeoTri1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Harpia_harpyja/bHarHar1/genomic_data/pacbio/ trio: '' - vglId: bGeoTri1 - vgp_phase: phase2 + vglId: bHarHar1 + vgp_phase: phase3 - asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_914725855.1 class: Actinopterygii,Bony fishes common_name: yellowfin tuna