diff --git a/_data/table_tracker.yml b/_data/table_tracker.yml index c3a6817..2ab63e1 100644 --- a/_data/table_tracker.yml +++ b/_data/table_tracker.yml @@ -1,23 +1,23 @@ -info: Oct 25 2021 17:00:02 +info: Oct 26 2021 11:23:21 toc: -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_900246225.5 +- asm: '#' class: Actinopterygii,Bony fishes - common_name: eastern happy - family: Cichlidae - hub: others - order: Cichliformes - scientific_name: Astatotilapia calliptera - status: 8-NCBI - taxon_id: '8154' + common_name: red shiner + family: Leuciscidae + hub: vgl + order: Cypriniformes + scientific_name: Cyprinella lutrensis + status: 0-data_queued + taxon_id: '28791' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Astatotilapia_calliptera/fAstCal1/genomic_data/10x/ + status: 4 + url: '#' BN: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Astatotilapia_calliptera/fAstCal1/genomic_data/bionano/ + status: 0 + url: '#' HiC: - status: 4 + status: 0 url: '#' Ilm: status: 4 @@ -26,20 +26,19 @@ toc: status: 4 url: '#' PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Astatotilapia_calliptera/fAstCal1/genomic_data/pacbio/ - trio: '' - vglId: fAstCal1 - vgp_phase: phase3 + status: 0 + url: '#' + vglId: fCypLut1 + vgp_phase: phase2 - asm: '#' - class: Aves,birds - common_name: Micronesian kingfisher - family: Alcedinidae + class: Chondrichthyes,cartilaginous fishes + common_name: Caribbean electric ray + family: Narcinidae hub: vgl - order: Coraciiformes - scientific_name: Todiramphus cinnamominus + order: Torpediniformes + scientific_name: Narcine bancroftii status: 2-data_progress - taxon_id: '1006542' + taxon_id: '1343680' techs: 10X: status: 4 @@ -48,8 +47,8 @@ toc: status: 2 url: '#' HiC: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Todiramphus_cinnamominus/bTodCin1/genomic_data/arima/ + status: 0 + url: '#' Ilm: status: 4 url: '#' @@ -59,56 +58,53 @@ toc: PB: status: 0 url: '#' - trio: '' - vglId: bTodCin1 - vgp_phase: phase2 -- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Vidua_chalybeata/bVidCha1/assembly_vgp_standard_1.5/ - class: Aves,birds - common_name: village indigobird - family: Estrildidae + vglId: sNarBan1 + vgp_phase: phase1 +- asm: '#' + class: Amphibia,amphibians + common_name: corroboree frog + family: Myobatrachidae hub: vgl - order: Passeriformes - scientific_name: Vidua chalybeata - status: 5-asm_done - taxon_id: '81927' + order: Anura + scientific_name: Pseudophryne corroboree + status: 2-data_progress + taxon_id: '495146' techs: 10X: status: 4 url: '#' BN: - status: 4 + status: 1 url: '#' HiC: - link: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Vidua_chalybeata/bVidCha2/genomic_data/arima/ - status: 1 + status: 2 url: '#' Ilm: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Vidua_chalybeata/bVidCha1/genomic_data/illumina/ + status: 4 + url: '#' ONT: status: 4 url: '#' PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Vidua_chalybeata/bVidCha1/genomic_data/pacbio/ - trio: '' - vglId: bVidCha1 - vgp_phase: phase3 + status: 2 + url: '#' + vglId: aPseCor3 + vgp_phase: phase1 - asm: '#' - class: Reptilia,reptiles - common_name: eastern musk turtle - family: Kinosternidae + class: Chondrichthyes,cartilaginous fishes + common_name: sharpnose sevengill shark + family: Hexanchidae hub: vgl - order: Testudines - scientific_name: Sternotherus odoratus + order: Hexanchiformes + scientific_name: Heptranchias perlo status: 2-data_progress - taxon_id: '142480' + taxon_id: '212740' techs: 10X: status: 4 url: '#' BN: - status: 1 + status: 2 url: '#' HiC: status: 0 @@ -122,27 +118,27 @@ toc: PB: status: 0 url: '#' - vglId: rSteOdo1 + vglId: sHepPer1 vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_011100535.2 - class: Mammalia,mammals - common_name: white-tufted-ear marmoset - family: Cebidae +- asm: '#' + class: Aves,birds + common_name: Savannah sparrow + family: Passerellidae hub: vgl - order: Primates - scientific_name: Callithrix jacchus - status: 8-NCBI - taxon_id: '9483' + order: Passeriformes + scientific_name: Passerculus sandwichensis + status: 2-data_progress + taxon_id: '161624' techs: 10X: - status: 1 + status: 4 url: '#' BN: status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Passerculus_sandwichensis/bPasSan1/genomic_data/bionano/ HiC: status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Passerculus_sandwichensis/bPasSan1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -150,61 +146,61 @@ toc: status: 4 url: '#' PB: - status: 1 + status: 2 url: '#' - trio: mCalJac2/mCalJac3 - vglId: mCalJac1 - vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_910591455.1 - class: Actinopterygii,Bony fishes - common_name: rock gunnel - family: Pholidae - hub: others - order: Perciformes - scientific_name: Pholis gunnellus - status: 8-NCBI - taxon_id: '56726' + trio: '' + vglId: bPasSan1 + vgp_phase: phase2 +- asm: '#' + class: Aves,birds + common_name: lesser rhea + family: Rheidae + hub: vgl + order: Rheiformes + scientific_name: Rhea pennata + status: 2-data_progress + taxon_id: '8795' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pholis_gunnellus/fPhoGun1/genomic_data/10x/ + status: 4 + url: '#' BN: status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rhea_pennata/bPtePen1/genomic_data/bionano/ HiC: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pholis_gunnellus/fPhoGun1/genomic_data/arima/ + status: 0 + url: '#' Ilm: - status: 1 + status: 4 url: '#' ONT: - status: 1 + status: 4 url: '#' PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pholis_gunnellus/fPhoGun1/genomic_data/pacbio/ + status: 0 + url: '#' trio: '' - vglId: fPhoGun1 + vglId: bPtePen1 vgp_phase: phase2 -- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Falco_biarmicus/bFalBia1/assembly_vgp_standard_2.0/ +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_009819885.2 class: Aves,birds - common_name: lanner falcon - family: Falconidae + common_name: Swainson's thrush + family: Turdidae hub: vgl - order: Falconiformes - scientific_name: Falco biarmicus - status: 6-asm_curation - taxon_id: '345155' + order: Passeriformes + scientific_name: Catharus ustulatus + status: 8-NCBI + taxon_id: '91951' techs: 10X: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Catharus_ustulatus/bCatUst1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Falco_biarmicus/bFalBia1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Catharus_ustulatus/bCatUst1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Falco_biarmicus/bFalBia1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Catharus_ustulatus/bCatUst1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -213,60 +209,60 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Falco_biarmicus/bFalBia1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Catharus_ustulatus/bCatUst1/genomic_data/pacbio/ trio: '' - vglId: bFalBia1 - vgp_phase: phase4 -- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pholidichthys_leucotaenia/fPhoLeu1/assembly_curated/ - class: Actinopterygii,Bony fishes - common_name: convict blenny - family: Pholidichthyidae - hub: others - order: Cichliformes - scientific_name: Pholidichthys leucotaenia - status: 7-asm_curated - taxon_id: '390368' + vglId: bCatUst1 + vgp_phase: phase2 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_017639515.1 + class: Chondrichthyes,cartilaginous fishes + common_name: great white shark + family: Alopiidae + hub: vgl + order: Lamniformes + scientific_name: Carcharodon carcharias + status: 8-NCBI + taxon_id: '13397' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pholidichthys_leucotaenia/fPhoLeu1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Carcharodon_carcharias/sCarCar2/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pholidichthys_leucotaenia/fPhoLeu1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Carcharodon_carcharias/sCarCar2/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pholidichthys_leucotaenia/fPhoLeu1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Carcharodon_carcharias/sCarCar2/genomic_data/arima/ Ilm: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Carcharodon_carcharias/sCarCar2/genomic_data/illumina/ ONT: status: 4 url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pholidichthys_leucotaenia/fPhoLeu1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Carcharodon_carcharias/sCarCar2/genomic_data/pacbio/ trio: '' - vglId: fPhoLeu1 + vglId: sCarCar2 vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_008822115.3 +- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Corvus_hawaiiensis/bCorHaw1/assembly_curated/ class: Aves,birds - common_name: zebra finch - family: Estrildidae + common_name: hawaiian crow + family: Corvidae hub: vgl order: Passeriformes - scientific_name: Taeniopygia guttata - status: 8-NCBI - taxon_id: '59729' + scientific_name: Corvus hawaiiensis + status: 7-asm_curated + taxon_id: '134902' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Taeniopygia_guttata/bTaeGut2/genomic_data/10x/ + status: 4 + url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Taeniopygia_guttata/bTaeGut2/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Corvus_hawaiiensis/bCorHaw1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Taeniopygia_guttata/bTaeGut2/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Corvus_hawaiiensis/bCorHaw1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -275,59 +271,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Taeniopygia_guttata/bTaeGut2/genomic_data/pacbio/ - trio: bTaeGut3/bTaeGut4 - vglId: bTaeGut2 - vgp_phase: phase1 -- asm: '#' - class: Reptilia,reptiles - common_name: diamondback terrapin - family: Emydidae + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Corvus_hawaiiensis/bCorHaw1/genomic_data/pacbio/ + trio: '' + vglId: bCorHaw1 + vgp_phase: phase2 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_901000725.3 + class: Actinopterygii,Bony fishes + common_name: torafugu + family: Tetraodontidae hub: vgl - order: Testudines - scientific_name: Malaclemys terrapin - status: 2-data_progress - taxon_id: '8485' - techs: - 10X: - status: 4 - url: '#' - BN: - status: 1 - url: '#' - HiC: - status: 2 - url: '#' - Ilm: - status: 4 - url: '#' - ONT: - status: 4 - url: '#' - PB: - status: 0 - url: '#' - vglId: rMalTer1 - vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_902655055.2 - class: Mammalia,mammals - common_name: Eurasian river otter - family: Mustelidae - hub: others - order: Carnivora - scientific_name: Lutra lutra + order: Tetraodontiformes + scientific_name: Takifugu rubripes status: 8-NCBI - taxon_id: '9657' + taxon_id: '31033' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lutra_lutra/mLutLut1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Takifugu_rubripes/fTakRub1/genomic_data/10x/ BN: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Takifugu_rubripes/fTakRub1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lutra_lutra/mLutLut1/genomic_data/baylor-hic/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Takifugu_rubripes/fTakRub1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -336,60 +302,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lutra_lutra/mLutLut1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Takifugu_rubripes/fTakRub1/genomic_data/pacbio/ trio: '' - vglId: mLutLut1 + vglId: fTakRub1 vgp_phase: phase1 -- asm: '#' +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_009819595.1 class: Aves,birds - common_name: lesser rhea - family: Rheidae - hub: vgl - order: Rheiformes - scientific_name: Rhea pennata - status: 2-data_progress - taxon_id: '8795' - techs: - 10X: - status: 4 - url: '#' - BN: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rhea_pennata/bPtePen1/genomic_data/bionano/ - HiC: - status: 0 - url: '#' - Ilm: - status: 4 - url: '#' - ONT: - status: 4 - url: '#' - PB: - status: 0 - url: '#' - trio: '' - vglId: bPtePen1 - vgp_phase: phase2 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_011762505.1 - class: Mammalia,mammals - common_name: African grass rat - family: Muridae + common_name: carmine bee-eater + family: Meropidae hub: vgl - order: Rodentia - scientific_name: Arvicanthis niloticus + order: Coraciiformes + scientific_name: Merops nubicus status: 8-NCBI - taxon_id: '61156' + taxon_id: '57421' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Arvicanthis_niloticus/mArvNil1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Merops_nubicus/bMerNub1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Arvicanthis_niloticus/mArvNil1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Merops_nubicus/bMerNub1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Arvicanthis_niloticus/mArvNil1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Merops_nubicus/bMerNub1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -398,29 +333,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Arvicanthis_niloticus/mArvNil1/genomic_data/pacbio/ - trio: mArvNil2/mArvNil3 - vglId: mArvNil1 - vgp_phase: phase2 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Merops_nubicus/bMerNub1/genomic_data/pacbio/ + trio: '' + vglId: bMerNub1 + vgp_phase: phase1 - asm: '#' - class: Actinopteri,Bony fishes - common_name: banded killifish - family: Fundulidae + class: Amphibia,amphibians + common_name: plains spadefoot toad + family: Pelobatidae hub: vgl - order: Cyprinodontiformes - scientific_name: Fundulus diaphanus + order: Anura + scientific_name: Spea bombifrons status: 2-data_progress - taxon_id: '54267' + taxon_id: '233779' techs: 10X: status: 4 url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Fundulus_diaphanus/fFunDia1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Spea_bombifrons/aSpeBom1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Fundulus_diaphanus/fFunDia1/genomic_data/arima/ + url: '#' Ilm: status: 4 url: '#' @@ -431,39 +366,8 @@ toc: status: 0 url: '#' trio: '' - vglId: fFunDia1 - vgp_phase: phase2 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_014108245.1 - class: Mammalia,mammals - common_name: Kuhl's pipistrelle - family: Vespertilionidae - hub: others - order: Chiroptera - scientific_name: Pipistrellus kuhlii - status: 8-NCBI - taxon_id: '59472' - techs: - 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pipistrellus_kuhlii/mPipKuh1/genomic_data/10x/ - BN: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pipistrellus_kuhlii/mPipKuh1/genomic_data/bionano/ - HiC: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pipistrellus_kuhlii/mPipKuh1/genomic_data/phase/ - Ilm: - status: 4 - url: '#' - ONT: - status: 4 - url: '#' - PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pipistrellus_kuhlii/mPipKuh1/genomic_data/pacbio/ - trio: '' - vglId: mPipKuh1 - vgp_phase: phase2 + vglId: aSpeBom1 + vgp_phase: phase1 - asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_901699155.2 class: Aves,birds common_name: European turtle dove @@ -495,25 +399,25 @@ toc: trio: '' vglId: bStrTur1 vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_009829155.1 - class: Mammalia,mammals - common_name: ermine - family: Mustelidae - hub: vgl - order: Carnivora - scientific_name: Mustela erminea +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_013358685.1 + class: Actinopterygii,Bony fishes + common_name: warty frogfish + family: Antennariidae + hub: others + order: Lophiiformes + scientific_name: Antennarius maculatus status: 8-NCBI - taxon_id: '36723' + taxon_id: '882753' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Mustela_erminea/mMusErm1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Antennarius_maculatus/fAntMac1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Mustela_erminea/mMusErm1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Antennarius_maculatus/fAntMac1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Mustela_erminea/mMusErm1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Antennarius_maculatus/fAntMac1/genomic_data/phase/ Ilm: status: 4 url: '#' @@ -522,30 +426,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Mustela_erminea/mMusErm1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Antennarius_maculatus/fAntMac1/genomic_data/pacbio/ trio: '' - vglId: mMusErm1 - vgp_phase: phase3 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_903992545.1 - class: Mammalia,mammals - common_name: common pipistrelle - family: Vespertilionidae - hub: others - order: Chiroptera - scientific_name: Pipistrellus pipistrellus - status: 8-NCBI - taxon_id: '59474' + vglId: fAntMac1 + vgp_phase: phase1 +- asm: '#' + class: Reptilia,reptiles + common_name: royal ground snake + family: Dipsadidae + hub: vgl + order: Squamata + scientific_name: Erythrolamprus reginae + status: 3-data_done + taxon_id: '121349' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pipistrellus_pipistrellus/mPipPip1/genomic_data/10x/ - BN: status: 4 url: '#' - HiC: - link: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pipistrellus_pipistrellus/mPipPip2/genomic_data/arima/ + BN: status: 1 url: '#' + HiC: + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Erythrolamprus_reginae/rEryReg1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -554,30 +457,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pipistrellus_pipistrellus/mPipPip1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Erythrolamprus_reginae/rEryReg1/genomic_data/pacbio/ trio: '' - vglId: mPipPip1 - vgp_phase: phase4 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_014839755.1 - class: Aves,birds - common_name: garden warbler - family: Sylviidae + vglId: rEryReg1 + vgp_phase: phase2 +- asm: '#' + class: Mammalia,mammals + common_name: tammar wallaby + family: Macropodidae hub: vgl - order: Passeriformes - scientific_name: Sylvia borin - status: 8-NCBI - taxon_id: '73324' + order: Diprotodontia + scientific_name: Macropus eugenii + status: 3-data_done + taxon_id: '9315' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sylvia_borin/bSylBor1/genomic_data/10x/ + status: 4 + url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sylvia_borin/bSylBor1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Macropus_eugenii/mMacEug1/genomic_data/bionano/ HiC: - link: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sylvia_borin/bSylBor2/genomic_data/arima/ status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Macropus_eugenii/mMacEug1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -586,29 +488,60 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sylvia_borin/bSylBor1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Macropus_eugenii/mMacEug1/genomic_data/pacbio/ trio: '' - vglId: bSylBor1 - vgp_phase: phase2 + vglId: mMacEug1 + vgp_phase: phase1 - asm: '#' - class: Aves,birds - common_name: blue jay - family: Corvidae - hub: vgl - order: Passeriformes - scientific_name: Cyanocitta cristata - status: 1-DNA_isolation - taxon_id: '28727' + class: Actinopterygii,Bony fishes + common_name: shanny + family: Blenniidae + hub: others + order: Blenniiformes + scientific_name: Lipophrys pholis + status: 2-data_progress + taxon_id: '56720' techs: 10X: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lipophrys_pholis/fLipPho2/genomic_data/10x/ BN: status: 0 url: '#' HiC: + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lipophrys_pholis/fLipPho2/genomic_data/arima/ + Ilm: + status: 0 + url: '#' + ONT: status: 0 url: '#' + PB: + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lipophrys_pholis/fLipPho2/genomic_data/pacbio/ + trio: '' + vglId: fLipPho2 + vgp_phase: phase3 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_015227675.2 + class: Mammalia,mammals + common_name: Norway rat + family: Muridae + hub: others + order: Rodentia + scientific_name: Rattus norvegicus + status: 8-NCBI + taxon_id: '10116' + techs: + 10X: + status: 1 + url: '#' + BN: + status: 1 + url: '#' + HiC: + status: 1 + url: '#' Ilm: status: 4 url: '#' @@ -616,29 +549,30 @@ toc: status: 4 url: '#' PB: - status: 0 + status: 1 url: '#' - vglId: bCyaCri2 + trio: '' + vglId: mRatNor1 vgp_phase: phase2 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_004126475.2 +- asm: '#' class: Mammalia,mammals - common_name: pale spear-nosed bat - family: Phyllostomidae + common_name: chimpanzee + family: Hominidae hub: vgl - order: Chiroptera - scientific_name: Phyllostomus discolor - status: 8-NCBI - taxon_id: '89673' + order: Primates + scientific_name: Pan troglodytes + status: 0-data_queued + taxon_id: '9598' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Phyllostomus_discolor/mPhyDis1/genomic_data/10x/ + status: 4 + url: '#' BN: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Phyllostomus_discolor/mPhyDis1/genomic_data/bionano/ + status: 0 + url: '#' HiC: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Phyllostomus_discolor/mPhyDis1/genomic_data/arima/ + status: 0 + url: '#' Ilm: status: 4 url: '#' @@ -646,30 +580,29 @@ toc: status: 4 url: '#' PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Phyllostomus_discolor/mPhyDis1/genomic_data/pacbio/ - trio: '' - vglId: mPhyDis1 - vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_901765095.2 - class: Amphibia,amphibians - common_name: tiny Cayenne caecilian - family: Siphonopidae + status: 0 + url: '#' + vglId: mPanTro2 + vgp_phase: phase3 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_003957555.1 + class: Aves,birds + common_name: Anna's hummingbird + family: Trochilidae hub: others - order: Gymnophiona - scientific_name: Microcaecilia unicolor + order: Apodiformes + scientific_name: Calypte anna status: 8-NCBI - taxon_id: '1415580' + taxon_id: '9244' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Microcaecilia_unicolor/aMicUni1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Calypte_anna/bCalAnn1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Microcaecilia_unicolor/aMicUni1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Calypte_anna/bCalAnn1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Microcaecilia_unicolor/aMicUni1/genomic_data/dovetail/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Calypte_anna/bCalAnn1/genomic_data/phase/ Ilm: status: 4 url: '#' @@ -678,28 +611,28 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Microcaecilia_unicolor/aMicUni1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Calypte_anna/bCalAnn1/genomic_data/pacbio/ trio: '' - vglId: aMicUni1 + vglId: bCalAnn1 vgp_phase: phase1 -- asm: '#' +- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Danio_rerio/fDreSAT1/assembly_curated/ class: Actinopterygii,Bony fishes - common_name: trahira - family: Erythrinidae - hub: vgl - order: Characiformes - scientific_name: Hoplias malabaricus - status: 2-data_progress - taxon_id: '27720' + common_name: zebrafish + family: Danionidae + hub: others + order: Cypriniformes + scientific_name: Danio rerio + status: 7-asm_curated + taxon_id: '7955' techs: 10X: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Danio_rerio/fDreSAT1/genomic_data/10x/ BN: - status: 2 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Danio_rerio/fDreSAT1/genomic_data/bionano/ HiC: - status: 0 + status: 4 url: '#' Ilm: status: 4 @@ -708,29 +641,30 @@ toc: status: 4 url: '#' PB: - status: 0 - url: '#' - vglId: fHopMal1 - vgp_phase: phase2 + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Danio_rerio/fDreSAT1/genomic_data/pacbio/ + trio: '' + vglId: fDreSAT1 + vgp_phase: phase1 - asm: '#' class: Aves,birds - common_name: tufted titmouse - family: Paridae + common_name: Micronesian kingfisher + family: Alcedinidae hub: vgl - order: Passeriformes - scientific_name: Baeolophus bicolor - status: 1-DNA_isolation - taxon_id: '88114' + order: Coraciiformes + scientific_name: Todiramphus cinnamominus + status: 2-data_progress + taxon_id: '1006542' techs: 10X: status: 4 url: '#' BN: - status: 0 + status: 2 url: '#' HiC: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Todiramphus_cinnamominus/bTodCin1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -740,27 +674,29 @@ toc: PB: status: 0 url: '#' - vglId: bBaeBic1 + trio: '' + vglId: bTodCin1 vgp_phase: phase2 -- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Scatophagus_argus/fScaArg1/assembly_curated/ - class: Enteropneusta,Bony fishes - common_name: spotted scat - family: Scatophagidae - hub: others - order: '' - scientific_name: Scatophagus argus - status: 7-asm_curated - taxon_id: '75038' +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_016904835.1 + class: Aves,birds + common_name: rifleman + family: Acanthisittidae + hub: vgl + order: Passeriformes + scientific_name: Acanthisitta chloris + status: 8-NCBI + taxon_id: '57068' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Scatophagus_argus/fScaArg1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Acanthisitta_chloris/bAcaChl1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Scatophagus_argus/fScaArg1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Acanthisitta_chloris/bAcaChl1/genomic_data/bionano/ HiC: + link: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Acanthisitta_chloris/bAcaChl4/genomic_data/arima/ status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Scatophagus_argus/fScaArg1/genomic_data/arima/ + url: '#' Ilm: status: 4 url: '#' @@ -769,29 +705,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Scatophagus_argus/fScaArg1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Acanthisitta_chloris/bAcaChl1/genomic_data/pacbio/ trio: '' - vglId: fScaArg1 + vglId: bAcaChl1 vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_900496995.4 - class: Aves,birds - common_name: golden eagle - family: Accipitridae - hub: others - order: Falconiformes - scientific_name: Aquila chrysaetos +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_015852505.1 + class: Mammalia,mammals + common_name: Australian echidna + family: Tachyglossidae + hub: vgl + order: Monotremata + scientific_name: Tachyglossus aculeatus status: 8-NCBI - taxon_id: '8962' + taxon_id: '9261' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Aquila_chrysaetos/bAquChr1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Tachyglossus_aculeatus/mTacAcu1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Aquila_chrysaetos/bAquChr1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Tachyglossus_aculeatus/mTacAcu1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Aquila_chrysaetos/bAquChr1/genomic_data/dovetail/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Tachyglossus_aculeatus/mTacAcu1/genomic_data/phase/ Ilm: status: 4 url: '#' @@ -800,29 +736,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Aquila_chrysaetos/bAquChr1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Tachyglossus_aculeatus/mTacAcu1/genomic_data/pacbio/ trio: '' - vglId: bAquChr1 - vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_012275275.1 + vglId: mTacAcu1 + vgp_phase: phase2 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_009819775.1 class: Aves,birds - common_name: budgerigar - family: Psittaculidae + common_name: American flamingo + family: Phoenicopteridae hub: vgl - order: Psittaciformes - scientific_name: Melopsittacus undulatus + order: Phoenicopteriformes + scientific_name: Phoenicopterus ruber status: 8-NCBI - taxon_id: '13146' + taxon_id: '9217' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Melopsittacus_undulatus/bMelUnd1/genomic_data/10x/ + url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Melopsittacus_undulatus/bMelUnd1/genomic_data/bionano/ + url: '#' HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Melopsittacus_undulatus/bMelUnd1/genomic_data/arima/ + url: '#' Ilm: status: 4 url: '#' @@ -831,29 +767,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Melopsittacus_undulatus/bMelUnd1/genomic_data/pacbio/ - trio: bMelUnd2/bMelUnd3 - vglId: bMelUnd1 - vgp_phase: phase2 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_011004875.1 + url: '#' + trio: '' + vglId: bPhoRub1 + vgp_phase: phase1 +- asm: '#' class: Aves,birds - common_name: grey crowned-crane - family: Gruidae + common_name: Eastern phoebe + family: Tyrannidae hub: vgl - order: Gruiformes - scientific_name: Balearica regulorum - status: 8-NCBI - taxon_id: '925459' + order: Passeriformes + scientific_name: Sayornis phoebe + status: 0-data_queued + taxon_id: '56315' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Balearica_regulorum/bBalReg1/genomic_data/10x/ + status: 4 + url: '#' BN: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Balearica_regulorum/bBalReg1/genomic_data/bionano/ + status: 0 + url: '#' HiC: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Balearica_regulorum/bBalReg1/genomic_data/arima/ + status: 0 + url: '#' Ilm: status: 4 url: '#' @@ -861,30 +797,29 @@ toc: status: 4 url: '#' PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Balearica_regulorum/bBalReg1/genomic_data/pacbio/ - trio: '' - vglId: bBalReg1 - vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_009829145.1 - class: Aves,birds - common_name: lance-tailed manakin - family: Pipridae - hub: vgl - order: Passeriformes - scientific_name: Chiroxiphia lanceolata + status: 0 + url: '#' + vglId: bSayPho1 + vgp_phase: phase2 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_901709675.1 + class: Actinopterygii,Bony fishes + common_name: greater pipefish + family: Syngnathidae + hub: others + order: Syngnathiformes + scientific_name: Syngnathus acus status: 8-NCBI - taxon_id: '296741' + taxon_id: '161584' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Chiroxiphia_lanceolata/bChiLan1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Syngnathus_acus/fSynAcu1/genomic_data/10x/ BN: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Chiroxiphia_lanceolata/bChiLan1/genomic_data/bionano/ + status: 4 + url: '#' HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Chiroxiphia_lanceolata/bChiLan1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Syngnathus_acus/fSynAcu1/genomic_data/dovetail/ Ilm: status: 4 url: '#' @@ -893,29 +828,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Chiroxiphia_lanceolata/bChiLan1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Syngnathus_acus/fSynAcu1/genomic_data/pacbio/ trio: '' - vglId: bChiLan1 + vglId: fSynAcu1 vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_017976425.1 - class: Enteropneusta,Bony fishes - common_name: banded archerfish - family: Toxotidae - hub: others - order: '' - scientific_name: Toxotes jaculatrix - status: 8-NCBI - taxon_id: '941984' +- asm: '#' + class: Aves,birds + common_name: white-throated sparrow + family: Passerellidae + hub: vgl + order: Passeriformes + scientific_name: Zonotrichia albicollis + status: 0-data_queued + taxon_id: '44394' techs: 10X: status: 4 url: '#' BN: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Toxotes_jaculatrix/fToxJac2/genomic_data/bionano/ + status: 0 + url: '#' HiC: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Toxotes_jaculatrix/fToxJac2/genomic_data/arima/ + status: 0 + url: '#' Ilm: status: 4 url: '#' @@ -923,29 +858,28 @@ toc: status: 4 url: '#' PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Toxotes_jaculatrix/fToxJac2/genomic_data/pacbio/ - trio: '' - vglId: fToxJac2 - vgp_phase: phase1 + status: 0 + url: '#' + vglId: bZonAlb1 + vgp_phase: phase3 - asm: '#' class: Mammalia,mammals - common_name: North Atlantic right whale - family: Balaenidae + common_name: alpaca + family: Camelidae hub: vgl order: Artiodactyla - scientific_name: Eubalaena glacialis - status: 3-data_done - taxon_id: '27606' + scientific_name: Vicugna pacos + status: 0-data_queued + taxon_id: '30538' techs: 10X: status: 4 url: '#' BN: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Eubalaena_glacialis/mEubGla1/genomic_data/bionano/ + status: 0 + url: '#' HiC: - status: 1 + status: 0 url: '#' Ilm: status: 4 @@ -954,30 +888,29 @@ toc: status: 4 url: '#' PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Eubalaena_glacialis/mEubGla1/genomic_data/pacbio/ - trio: '' - vglId: mEubGla1 + status: 0 + url: '#' + vglId: mVicPac1 vgp_phase: phase2 -- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Jaculus_jaculus/mJacJac1/assembly_curated/ - class: Mammalia,mammals - common_name: lesser Egyptian jerboa - family: Dipodidae - hub: others - order: Rodentia - scientific_name: Jaculus jaculus - status: 7-asm_curated - taxon_id: '51337' +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_902713615.2 + class: Chondrichthyes,cartilaginous fishes + common_name: smaller spotted catshark + family: Scyliorhinidae + hub: vgl + order: Carcharhiniformes + scientific_name: Scyliorhinus canicula + status: 8-NCBI + taxon_id: '7830' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Jaculus_jaculus/mJacJac1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Scyliorhinus_canicula/sScyCan1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Jaculus_jaculus/mJacJac1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Scyliorhinus_canicula/sScyCan1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Jaculus_jaculus/mJacJac1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Scyliorhinus_canicula/sScyCan1/genomic_data/baylor-hic/ Ilm: status: 4 url: '#' @@ -986,29 +919,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Jaculus_jaculus/mJacJac1/genomic_data/pacbio/ - trio: mJacJac2/mJacJac3 - vglId: mJacJac1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Scyliorhinus_canicula/sScyCan1/genomic_data/pacbio/ + trio: '' + vglId: sScyCan1 vgp_phase: phase1 -- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Apus_apus/bApuApu2/assembly_curated/ - class: Aves,birds - common_name: common swift - family: Apodidae +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_015237465.2 + class: Reptilia,reptiles + common_name: Green sea turtle + family: Cheloniidae hub: others - order: Apodiformes - scientific_name: Apus apus - status: 7-asm_curated - taxon_id: '8895' + order: Testudines + scientific_name: Chelonia mydas + status: 8-NCBI + taxon_id: '8469' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Apus_apus/bApuApu2/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Chelonia_mydas/rCheMyd1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Apus_apus/bApuApu2/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Chelonia_mydas/rCheMyd1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Apus_apus/bApuApu2/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Chelonia_mydas/rCheMyd1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -1017,25 +950,56 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Apus_apus/bApuApu2/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Chelonia_mydas/rCheMyd1/genomic_data/pacbio/ trio: '' - vglId: bApuApu2 + vglId: rCheMyd1 + vgp_phase: phase1 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_010909765.2 + class: Chondrichthyes,cartilaginous fishes + common_name: thorny skate + family: Rajidae + hub: vgl + order: Rajiformes + scientific_name: Amblyraja radiata + status: 8-NCBI + taxon_id: '386614' + techs: + 10X: + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Amblyraja_radiata/sAmbRad1/genomic_data/10x/ + BN: + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Amblyraja_radiata/sAmbRad1/genomic_data/bionano/ + HiC: + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Amblyraja_radiata/sAmbRad1/genomic_data/arima/ + Ilm: + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Amblyraja_radiata/sAmbRad1/genomic_data/illumina/ + ONT: + status: 4 + url: '#' + PB: + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Amblyraja_radiata/sAmbRad1/genomic_data/pacbio/ + trio: '' + vglId: sAmbRad1 vgp_phase: phase1 - asm: '#' - class: Amphibia,amphibians - common_name: rocket frog - family: Dendrobatidae + class: Aves,birds + common_name: American robin + family: Turdidae hub: vgl - order: Anura - scientific_name: Anomaloglossus baeobatrachus - status: 2-data_progress - taxon_id: '238106' + order: Passeriformes + scientific_name: Turdus migratorius + status: 0-data_queued + taxon_id: '9188' techs: 10X: status: 4 url: '#' BN: - status: 1 + status: 0 url: '#' HiC: status: 0 @@ -1049,27 +1013,27 @@ toc: PB: status: 0 url: '#' - vglId: aAnoBae1 - vgp_phase: phase2 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_017639655.2 - class: Aves,birds - common_name: lesser kestrel - family: Falconidae - hub: vgl - order: Falconiformes - scientific_name: Falco naumanni + vglId: bTurMig1 + vgp_phase: phase3 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_900634775.2 + class: Actinopterygii,Bony fishes + common_name: blunt-snouted clingfish + family: Gobiesocidae + hub: others + order: Blenniiformes + scientific_name: Gouania willdenowi status: 8-NCBI - taxon_id: '148594' + taxon_id: '441366' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Falco_naumanni/bFalNau1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Gouania_willdenowi/fGouWil2/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Falco_naumanni/bFalNau1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Gouania_willdenowi/fGouWil2/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Falco_naumanni/bFalNau1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Gouania_willdenowi/fGouWil2/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -1078,29 +1042,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Falco_naumanni/bFalNau1/genomic_data/pacbio/ - trio: bFalNau2/bFalNau3 - vglId: bFalNau1 - vgp_phase: phase4 -- asm: '#' - class: Aves,birds - common_name: tawny frogmouth - family: Podargidae + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Gouania_willdenowi/fGouWil2/genomic_data/pacbio/ + trio: '' + vglId: fGouWil2 + vgp_phase: phase1 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_009819535.1 + class: Reptilia,reptiles + common_name: sand lizard + family: Lacertidae hub: vgl - order: Caprimulgiformes - scientific_name: Podargus strigoides - status: 2-data_progress - taxon_id: '8905' + order: Squamata + scientific_name: Lacerta agilis + status: 8-NCBI + taxon_id: '80427' techs: 10X: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lacerta_agilis/rLacAgi1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Podargus_strigoides/bPodStr1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lacerta_agilis/rLacAgi1/genomic_data/bionano/ HiC: - status: 2 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lacerta_agilis/rLacAgi1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -1108,30 +1072,30 @@ toc: status: 4 url: '#' PB: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lacerta_agilis/rLacAgi1/genomic_data/pacbio/ trio: '' - vglId: bPodStr1 + vglId: rLacAgi1 vgp_phase: phase1 -- asm: '#' - class: Actinopterygii,Bony fishes - common_name: pejerrey - family: Atherinopsidae - hub: vgl - order: Atheriniformes - scientific_name: Odontesthes bonariensis - status: 0-data_queued - taxon_id: '219752' +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_014839685.1 + class: Actinopteri,Bony fishes + common_name: largescale foureyes + family: Anablepidae + hub: others + order: Cyprinodontiformes + scientific_name: Anableps anableps + status: 8-NCBI + taxon_id: '195821' techs: 10X: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Anableps_anableps/fAnaAna1/genomic_data/10x/ BN: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Anableps_anableps/fAnaAna1/genomic_data/bionano/ HiC: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Anableps_anableps/fAnaAna1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -1139,29 +1103,30 @@ toc: status: 4 url: '#' PB: - status: 0 - url: '#' - vglId: fOdoBon1 - vgp_phase: phase2 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_902362185.1 - class: Actinopterygii,Bony fishes - common_name: milkfish - family: Chanidae + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Anableps_anableps/fAnaAna1/genomic_data/pacbio/ + trio: '' + vglId: fAnaAna1 + vgp_phase: phase1 +- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Apus_apus/bApuApu2/assembly_curated/ + class: Aves,birds + common_name: common swift + family: Apodidae hub: others - order: Gonorynchiformes - scientific_name: Chanos chanos - status: 8-NCBI - taxon_id: '29144' + order: Apodiformes + scientific_name: Apus apus + status: 7-asm_curated + taxon_id: '8895' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Chanos_chanos/fChaCha1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Apus_apus/bApuApu2/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Chanos_chanos/fChaCha1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Apus_apus/bApuApu2/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Chanos_chanos/fChaCha1/genomic_data/dovetail/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Apus_apus/bApuApu2/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -1170,29 +1135,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Chanos_chanos/fChaCha1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Apus_apus/bApuApu2/genomic_data/pacbio/ trio: '' - vglId: fChaCha1 + vglId: bApuApu2 vgp_phase: phase1 -- asm: '#' +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_003369685.2 class: Mammalia,mammals - common_name: nine-banded armadillo - family: Dasypodidae - hub: vgl - order: Cingulata - scientific_name: Dasypus novemcinctus - status: 2-data_progress - taxon_id: '9361' + common_name: cattle + family: Bovidae + hub: others + order: Artiodactyla + scientific_name: Bos taurus + status: 8-NCBI + taxon_id: '9913' techs: 10X: - status: 4 + status: 1 url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dasypus_novemcinctus/mDasNov1/genomic_data/bionano/ + url: '#' HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dasypus_novemcinctus/mDasNov1/genomic_data/arima/ + url: '#' Ilm: status: 4 url: '#' @@ -1200,30 +1165,30 @@ toc: status: 4 url: '#' PB: - status: 2 + status: 1 url: '#' trio: '' - vglId: mDasNov1 + vglId: mBosTau1 vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_014176215.1 - class: Mammalia,mammals - common_name: Egyptian rousette - family: Pteropodidae +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_009769605.1 + class: Aves,birds + common_name: Abyssinian ground-hornbill + family: Bucorvidae hub: vgl - order: Chiroptera - scientific_name: Rousettus aegyptiacus + order: Bucerotiformes + scientific_name: Bucorvus abyssinicus status: 8-NCBI - taxon_id: '9407' + taxon_id: '153643' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rousettus_aegyptiacus/mRouAeg1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Bucorvus_abyssinicus/bBucAby1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rousettus_aegyptiacus/mRouAeg1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Bucorvus_abyssinicus/bBucAby1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rousettus_aegyptiacus/mRouAeg1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Bucorvus_abyssinicus/bBucAby1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -1232,29 +1197,60 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rousettus_aegyptiacus/mRouAeg1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Bucorvus_abyssinicus/bBucAby1/genomic_data/pacbio/ trio: '' - vglId: mRouAeg1 - vgp_phase: phase2 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_013358685.1 - class: Actinopterygii,Bony fishes - common_name: warty frogfish - family: Antennariidae + vglId: bBucAby1 + vgp_phase: phase1 +- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pan_troglodytes/mPanTro1/assembly_vgp_standard_1.6/ + class: Mammalia,mammals + common_name: chimpanzee + family: Hominidae hub: others - order: Lophiiformes - scientific_name: Antennarius maculatus - status: 8-NCBI - taxon_id: '882753' + order: Primates + scientific_name: Pan troglodytes + status: 5-asm_done + taxon_id: '9598' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Antennarius_maculatus/fAntMac1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pan_troglodytes/mPanTro1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Antennarius_maculatus/fAntMac1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pan_troglodytes/mPanTro1/genomic_data/bionano/ HiC: + status: 4 + url: '#' + Ilm: + status: 4 + url: '#' + ONT: + status: 4 + url: '#' + PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Antennarius_maculatus/fAntMac1/genomic_data/phase/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pan_troglodytes/mPanTro1/genomic_data/pacbio/ + trio: '' + vglId: mPanTro1 + vgp_phase: phase4 +- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Falco_biarmicus/bFalBia1/assembly_vgp_standard_2.0/ + class: Aves,birds + common_name: lanner falcon + family: Falconidae + hub: vgl + order: Falconiformes + scientific_name: Falco biarmicus + status: 6-asm_curation + taxon_id: '345155' + techs: + 10X: + status: 4 + url: '#' + BN: + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Falco_biarmicus/bFalBia1/genomic_data/bionano/ + HiC: + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Falco_biarmicus/bFalBia1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -1263,29 +1259,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Antennarius_maculatus/fAntMac1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Falco_biarmicus/bFalBia1/genomic_data/pacbio/ trio: '' - vglId: fAntMac1 - vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_902713615.2 + vglId: bFalBia1 + vgp_phase: phase4 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_009764475.2 class: Chondrichthyes,cartilaginous fishes - common_name: smaller spotted catshark - family: Scyliorhinidae + common_name: smalltooth sawfish + family: Pristidae hub: vgl - order: Carcharhiniformes - scientific_name: Scyliorhinus canicula + order: Rhinopristiformes + scientific_name: Pristis pectinata status: 8-NCBI - taxon_id: '7830' + taxon_id: '685728' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Scyliorhinus_canicula/sScyCan1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pristis_pectinata/sPriPec2/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Scyliorhinus_canicula/sScyCan1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pristis_pectinata/sPriPec2/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Scyliorhinus_canicula/sScyCan1/genomic_data/baylor-hic/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pristis_pectinata/sPriPec2/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -1294,29 +1290,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Scyliorhinus_canicula/sScyCan1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pristis_pectinata/sPriPec2/genomic_data/pacbio/ trio: '' - vglId: sScyCan1 + vglId: sPriPec2 vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_903684865.1 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_015220715.1 class: Actinopterygii,Bony fishes - common_name: zebrafish - family: Danionidae + common_name: red-bellied piranha + family: Serrasalmidae hub: others - order: Cypriniformes - scientific_name: Danio rerio + order: Characiformes + scientific_name: Pygocentrus nattereri status: 8-NCBI - taxon_id: '7955' + taxon_id: '42514' techs: 10X: status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pygocentrus_nattereri/fPygNat1/genomic_data/10x/ BN: status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pygocentrus_nattereri/fPygNat1/genomic_data/bionano/ HiC: status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pygocentrus_nattereri/fPygNat1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -1325,29 +1321,29 @@ toc: url: '#' PB: status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pygocentrus_nattereri/fPygNat1/genomic_data/pacbio/ trio: '' - vglId: fDreABH1 + vglId: fPygNat1 vgp_phase: phase1 -- asm: '#' - class: Aves,birds - common_name: seaside sparrow - family: Passerellidae - hub: vgl - order: Passeriformes - scientific_name: Ammodramus maritimus - status: 2-data_progress - taxon_id: '371905' +- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pholidichthys_leucotaenia/fPhoLeu1/assembly_curated/ + class: Actinopterygii,Bony fishes + common_name: convict blenny + family: Pholidichthyidae + hub: others + order: Cichliformes + scientific_name: Pholidichthys leucotaenia + status: 7-asm_curated + taxon_id: '390368' techs: 10X: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pholidichthys_leucotaenia/fPhoLeu1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Ammodramus_maritimus/bAmmMai1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pholidichthys_leucotaenia/fPhoLeu1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Ammodramus_maritimus/bAmmMai1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pholidichthys_leucotaenia/fPhoLeu1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -1355,29 +1351,29 @@ toc: status: 4 url: '#' PB: - status: 2 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pholidichthys_leucotaenia/fPhoLeu1/genomic_data/pacbio/ trio: '' - vglId: bAmmMai1 - vgp_phase: phase2 -- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pelecanus_crispus/bPelCri1/assembly_vgp_standard_2.1/ + vglId: fPhoLeu1 + vgp_phase: phase1 +- asm: '#' class: Aves,birds - common_name: Dalmatian pelican - family: Pelecanidae - hub: others - order: Pelecaniformes - scientific_name: Pelecanus crispus - status: 5-asm_done - taxon_id: '36300' + common_name: grey catbird + family: Mimidae + hub: vgl + order: Passeriformes + scientific_name: Dumetella carolinensis + status: 0-data_queued + taxon_id: '111981' techs: 10X: status: 4 url: '#' BN: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pelecanus_crispus/bPelCri1/genomic_data/bionano/ + status: 0 + url: '#' HiC: - status: 4 + status: 0 url: '#' Ilm: status: 4 @@ -1386,27 +1382,26 @@ toc: status: 4 url: '#' PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pelecanus_crispus/bPelCri1/genomic_data/pacbio/ - trio: '' - vglId: bPelCri1 - vgp_phase: phase1 + status: 0 + url: '#' + vglId: bDumCar1 + vgp_phase: phase2 - asm: '#' - class: Reptilia,reptiles - common_name: olive python - family: Pythonidae + class: Aves,birds + common_name: chipping sparrow + family: Passerellidae hub: vgl - order: Squamata - scientific_name: Liasis olivaceus - status: 2-data_progress - taxon_id: '283338' + order: Passeriformes + scientific_name: Spizella passerina + status: 0-data_queued + taxon_id: '40210' techs: 10X: status: 4 url: '#' BN: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Liasis_olivaceus/rLiaOli1/genomic_data/bionano/ + status: 0 + url: '#' HiC: status: 0 url: '#' @@ -1419,28 +1414,27 @@ toc: PB: status: 0 url: '#' - trio: '' - vglId: rLiaOli1 - vgp_phase: phase2 + vglId: bSpiPas1 + vgp_phase: phase3 - asm: '#' class: Mammalia,mammals - common_name: European shrew - family: Soricidae + common_name: Clouded leopard + family: Felidae hub: vgl - order: Eulipotyphla - scientific_name: Sorex araneus - status: 3-data_done - taxon_id: '42254' + order: Carnivora + scientific_name: Neofelis nebulosa + status: 2-data_progress + taxon_id: '61452' techs: 10X: status: 4 url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sorex_araneus/mSorAra1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Neofelis_nebulosa/mNeoNeb1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sorex_araneus/mSorAra1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Neofelis_nebulosa/mNeoNeb1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -1448,30 +1442,30 @@ toc: status: 4 url: '#' PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sorex_araneus/mSorAra1/genomic_data/pacbio/ + status: 2 + url: '#' trio: '' - vglId: mSorAra1 + vglId: mNeoNeb1 vgp_phase: phase3 - asm: '#' - class: Actinopterygii,Bony fishes - common_name: longfin smelt - family: Osmeridae + class: Reptilia,reptiles + common_name: diamondback terrapin + family: Emydidae hub: vgl - order: Osmeriformes - scientific_name: Spirinchus thaleichthys + order: Testudines + scientific_name: Malaclemys terrapin status: 2-data_progress - taxon_id: '260508' + taxon_id: '8485' techs: 10X: status: 4 url: '#' BN: - status: 0 + status: 1 url: '#' HiC: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Spirinchus_thaleichthys/fSpiTha1/genomic_data/arima/ + status: 2 + url: '#' Ilm: status: 4 url: '#' @@ -1479,30 +1473,29 @@ toc: status: 4 url: '#' PB: - status: 2 + status: 0 url: '#' - trio: '' - vglId: fSpiTha1 - vgp_phase: phase3 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_009650955.1 + vglId: rMalTer1 + vgp_phase: phase1 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_009769625.2 class: Aves,birds - common_name: New Caledonian crow - family: Corvidae + common_name: mute swan + family: Anatidae hub: vgl - order: Passeriformes - scientific_name: Corvus moneduloides + order: Anseriformes + scientific_name: Cygnus olor status: 8-NCBI - taxon_id: '1196302' + taxon_id: '8869' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Corvus_moneduloides/bCorMon1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cygnus_olor/bCygOlo1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Corvus_moneduloides/bCorMon1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cygnus_olor/bCygOlo1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Corvus_moneduloides/bCorMon1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cygnus_olor/bCygOlo1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -1511,28 +1504,28 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Corvus_moneduloides/bCorMon1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cygnus_olor/bCygOlo1/genomic_data/pacbio/ trio: '' - vglId: bCorMon1 + vglId: bCygOlo1 vgp_phase: phase3 - asm: '#' class: Aves,birds - common_name: blue jay - family: Corvidae + common_name: saltmarsh sparrow + family: Passerellidae hub: vgl order: Passeriformes - scientific_name: Cyanocitta cristata - status: 0-data_queued - taxon_id: '28727' + scientific_name: Ammodramus caudacutus + status: 2-data_progress + taxon_id: '69262' techs: 10X: status: 4 url: '#' BN: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Ammodramus_caudacutus/bAmmCau1/genomic_data/bionano/ HiC: - status: 0 + status: 1 url: '#' Ilm: status: 4 @@ -1541,28 +1534,29 @@ toc: status: 4 url: '#' PB: - status: 0 + status: 2 url: '#' - vglId: bCyaCri1 - vgp_phase: phase4 -- asm: '#' + trio: '' + vglId: bAmmCau1 + vgp_phase: phase3 +- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Branta_leucopsis/bBraLeu1/assembly_vgp_standard_1.5/ class: Aves,birds - common_name: grey catbird - family: Mimidae + common_name: barnacle goose + family: Anatidae hub: vgl - order: Passeriformes - scientific_name: Dumetella carolinensis - status: 0-data_queued - taxon_id: '111981' + order: Anseriformes + scientific_name: Branta leucopsis + status: 5-asm_done + taxon_id: '184711' techs: 10X: status: 4 url: '#' BN: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Branta_leucopsis/bBraLeu1/genomic_data/bionano/ HiC: - status: 0 + status: 4 url: '#' Ilm: status: 4 @@ -1571,29 +1565,30 @@ toc: status: 4 url: '#' PB: - status: 0 - url: '#' - vglId: bDumCar1 - vgp_phase: phase2 -- asm: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Branta_leucopsis/bBraLeu1/genomic_data/pacbio/ + trio: '' + vglId: bBraLeu1 + vgp_phase: phase3 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_015227805.1 class: Aves,birds - common_name: Kauai elepaio - family: Monarchidae + common_name: Barn swallow + family: Hirundinidae hub: vgl order: Passeriformes - scientific_name: Chasiempis sclateri - status: 2-data_progress - taxon_id: '1576535' + scientific_name: Hirundo rustica + status: 8-NCBI + taxon_id: '43150' techs: 10X: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Hirundo_rustica/bHirRus1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Chasiempis_sclateri/bChaScl1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Hirundo_rustica/bHirRus1/genomic_data/bionano/ HiC: - status: 3 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Hirundo_rustica/bHirRus1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -1601,29 +1596,29 @@ toc: status: 4 url: '#' PB: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Hirundo_rustica/bHirRus1/genomic_data/pacbio/ trio: '' - vglId: bChaScl1 + vglId: bHirRus1 vgp_phase: phase2 - asm: '#' - class: Mammalia,mammals - common_name: grey whale - family: Eschrichtiidae + class: Reptilia,reptiles + common_name: Atlantic ridley + family: Cheloniidae hub: vgl - order: Artiodactyla - scientific_name: Eschrichtius robustus - status: 2-data_progress - taxon_id: '9764' + order: Testudines + scientific_name: Lepidochelys kempii + status: 0-data_queued + taxon_id: '8472' techs: 10X: status: 4 url: '#' BN: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Eschrichtius_robustus/mEscRob1/genomic_data/bionano/ - HiC: - status: 1 + status: 0 + url: '#' + HiC: + status: 0 url: '#' Ilm: status: 4 @@ -1632,30 +1627,29 @@ toc: status: 4 url: '#' PB: - status: 2 + status: 0 url: '#' - trio: '' - vglId: mEscRob1 - vgp_phase: phase2 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_900747795.4 - class: Actinopterygii,Bony fishes - common_name: reedfish - family: Polypteridae + vglId: rLepKem1 + vgp_phase: phase3 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_009764565.3 + class: Reptilia,reptiles + common_name: leatherback sea turtle + family: Dermochelyidae hub: vgl - order: Polypteriformes - scientific_name: Erpetoichthys calabaricus + order: Testudines + scientific_name: Dermochelys coriacea status: 8-NCBI - taxon_id: '27687' + taxon_id: '27794' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Erpetoichthys_calabaricus/fErpCal1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dermochelys_coriacea/rDerCor1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Erpetoichthys_calabaricus/fErpCal1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dermochelys_coriacea/rDerCor1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Erpetoichthys_calabaricus/fErpCal1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dermochelys_coriacea/rDerCor1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -1664,60 +1658,30 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Erpetoichthys_calabaricus/fErpCal1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dermochelys_coriacea/rDerCor1/genomic_data/pacbio/ trio: '' - vglId: fErpCal1 + vglId: rDerCor1 vgp_phase: phase1 -- asm: '#' +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_014839755.1 class: Aves,birds - common_name: Humboldt's penguin - family: Spheniscidae + common_name: garden warbler + family: Sylviidae hub: vgl - order: Sphenisciformes - scientific_name: Spheniscus humboldti - status: 2-data_progress - taxon_id: '9240' - techs: - 10X: - status: 4 - url: '#' - BN: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Spheniscus_humboldti/bSphHub1/genomic_data/bionano/ - HiC: - status: 0 - url: '#' - Ilm: - status: 4 - url: '#' - ONT: - status: 4 - url: '#' - PB: - status: 0 - url: '#' - trio: '' - vglId: bSphHub1 - vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_013347855.1 - class: Actinopteri,Bony fishes - common_name: European eel - family: Anguillidae - hub: others - order: Anguilliformes - scientific_name: Anguilla anguilla + order: Passeriformes + scientific_name: Sylvia borin status: 8-NCBI - taxon_id: '7936' + taxon_id: '73324' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Anguilla_anguilla/fAngAng1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sylvia_borin/bSylBor1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Anguilla_anguilla/fAngAng1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sylvia_borin/bSylBor1/genomic_data/bionano/ HiC: + link: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sylvia_borin/bSylBor2/genomic_data/arima/ status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Anguilla_anguilla/fAngAng1/genomic_data/arima/ + url: '#' Ilm: status: 4 url: '#' @@ -1726,25 +1690,25 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Anguilla_anguilla/fAngAng1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sylvia_borin/bSylBor1/genomic_data/pacbio/ trio: '' - vglId: fAngAng1 - vgp_phase: phase1 + vglId: bSylBor1 + vgp_phase: phase2 - asm: '#' - class: Aves,birds - common_name: great cormorant - family: Phalacrocoracidae + class: Amphibia,amphibians + common_name: Sardinian tree frog + family: Hylidae hub: vgl - order: Pelecaniformes - scientific_name: Phalacrocorax carbo + order: Anura + scientific_name: Hyla sarda status: 2-data_progress - taxon_id: '9209' + taxon_id: '327740' techs: 10X: status: 4 url: '#' BN: - status: 0 + status: 1 url: '#' HiC: status: 0 @@ -1756,28 +1720,28 @@ toc: status: 4 url: '#' PB: - status: 0 + status: 2 url: '#' - vglId: bPhaCar1 - vgp_phase: phase1 + vglId: aHylSar1 + vgp_phase: phase3 - asm: '#' - class: Amphibia,amphibians - common_name: Riggenbach's reed frog - family: Hyperoliidae + class: Chondrichthyes,cartilaginous fishes + common_name: bramble shark + family: Echinorhinidae hub: vgl - order: Anura - scientific_name: Hyperolius riggenbachi - status: 2-data_progress - taxon_id: '752182' + order: Echinorhiniformes + scientific_name: Echinorhinus brucus + status: 0-data_queued + taxon_id: '862826' techs: 10X: status: 4 url: '#' BN: - status: 1 + status: 0 url: '#' HiC: - status: 2 + status: 0 url: '#' Ilm: status: 4 @@ -1788,27 +1752,27 @@ toc: PB: status: 0 url: '#' - vglId: aHypRig1 + vglId: sEchBru1 vgp_phase: phase1 - asm: '#' - class: Aves,birds - common_name: House wren - family: Certhiidae + class: Actinopterygii,Bony fishes + common_name: lesser salmon catfish + family: Ariidae hub: vgl - order: Passeriformes - scientific_name: Troglodytes aedon - status: 0-data_queued - taxon_id: '58211' + order: Siluriformes + scientific_name: Neoarius graeffei + status: 2-data_progress + taxon_id: '443677' techs: 10X: status: 4 url: '#' BN: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Neoarius_graeffei/fNeoGra1/genomic_data/bionano/ HiC: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Neoarius_graeffei/fNeoGra1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -1816,29 +1780,30 @@ toc: status: 4 url: '#' PB: - status: 0 + status: 2 url: '#' - vglId: bTroAed1 - vgp_phase: phase2 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_003957565.2 - class: Aves,birds - common_name: zebra finch - family: Estrildidae - hub: vgl - order: Passeriformes - scientific_name: Taeniopygia guttata + trio: '' + vglId: fNeoGra1 + vgp_phase: phase1 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_017639675.1 + class: Actinopterygii,Bony fishes + common_name: '' + family: Galaxiidae + hub: others + order: Galaxiiformes + scientific_name: Aplochiton taeniatus status: 8-NCBI - taxon_id: '59729' + taxon_id: '946358' techs: 10X: status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Aplochiton_taeniatus/fAplTae1/genomic_data/10x/ BN: status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Aplochiton_taeniatus/fAplTae1/genomic_data/bionano/ HiC: status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Aplochiton_taeniatus/fAplTae1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -1847,28 +1812,29 @@ toc: url: '#' PB: status: 1 - url: '#' - vglId: bTaeGut1 - vgp_phase: other -- asm: '#' - class: Amphibia,amphibians - common_name: Puerto Rican coqui - family: Eleutherodactylidae - hub: vgl - order: Anura - scientific_name: Eleutherodactylus coqui - status: 2-data_progress - taxon_id: '57060' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Aplochiton_taeniatus/fAplTae1/genomic_data/pacbio/ + trio: '' + vglId: fAplTae1 + vgp_phase: phase1 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_011004845.1 + class: Actinopterygii,Bony fishes + common_name: northern pike + family: Esocidae + hub: others + order: Esociformes + scientific_name: Esox lucius + status: 8-NCBI + taxon_id: '8010' techs: 10X: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Esox_lucius/fEsoLuc1/genomic_data/10x/ BN: - status: 2 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Esox_lucius/fEsoLuc1/genomic_data/bionano/ HiC: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Esox_lucius/fEsoLuc1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -1876,29 +1842,30 @@ toc: status: 4 url: '#' PB: - status: 0 - url: '#' - vglId: aEleCoq1 + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Esox_lucius/fEsoLuc1/genomic_data/pacbio/ + trio: '' + vglId: fEsoLuc1 vgp_phase: phase1 -- asm: '#' +- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Gopherus_flavomarginatus/rGopFla2/assembly_nhgri_trio_1.6/ class: Reptilia,reptiles - common_name: Gharial - family: Gavialidae + common_name: Mexican gopher tortoise + family: Testudinidae hub: vgl - order: Crocodylia - scientific_name: Gavialis gangeticus - status: 2-data_progress - taxon_id: '94835' + order: Testudines + scientific_name: Gopherus flavomarginatus + status: 6-asm_curation + taxon_id: '286002' techs: 10X: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Gopherus_flavomarginatus/rGopFla2/genomic_data/10x/ BN: - status: 2 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Gopherus_flavomarginatus/rGopFla2/genomic_data/bionano/ HiC: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Gopherus_flavomarginatus/rGopFla2/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -1906,60 +1873,30 @@ toc: status: 4 url: '#' PB: - status: 0 - url: '#' - vglId: rGavGan2 - vgp_phase: phase1 -- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Nomonyx_dominicus/bNomDom1/assembly_vgp_standard_1.5/ + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Gopherus_flavomarginatus/rGopFla2/genomic_data/pacbio/ + trio: rGopFla1/rGopFla3 + vglId: rGopFla2 + vgp_phase: phase4 +- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Turdus_merula/bTurMer1/assembly_v0/ class: Aves,birds - common_name: Masked duck - family: Anatidae + common_name: blackbird + family: Turdidae hub: vgl - order: Anseriformes - scientific_name: Nomonyx dominicus + order: Passeriformes + scientific_name: Turdus merula status: 5-asm_done - taxon_id: '555276' + taxon_id: '9187' techs: 10X: status: 4 url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Nomonyx_dominicus/bNomDom1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Turdus_merula/bTurMer1/genomic_data/bionano/ HiC: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Nomonyx_dominicus/bNomDom1/genomic_data/arima/ - Ilm: - status: 4 - url: '#' - ONT: status: 4 url: '#' - PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Nomonyx_dominicus/bNomDom1/genomic_data/pacbio/ - trio: '' - vglId: bNomDom1 - vgp_phase: phase3 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_900964775.1 - class: Actinopterygii,Bony fishes - common_name: Asian bonytongue - family: Osteoglossidae - hub: others - order: Osteoglossiformes - scientific_name: Scleropages formosus - status: 8-NCBI - taxon_id: '113540' - techs: - 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Scleropages_formosus/fSclFor1/genomic_data/10x/ - BN: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Scleropages_formosus/fSclFor1/genomic_data/bionano/ - HiC: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Scleropages_formosus/fSclFor1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -1968,29 +1905,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Scleropages_formosus/fSclFor1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Turdus_merula/bTurMer1/genomic_data/pacbio/ trio: '' - vglId: fSclFor1 - vgp_phase: phase1 + vglId: bTurMer1 + vgp_phase: phase4 - asm: '#' - class: Reptilia,reptiles - common_name: royal ground snake - family: Dipsadidae + class: Mammalia,mammals + common_name: European shrew + family: Soricidae hub: vgl - order: Squamata - scientific_name: Erythrolamprus reginae + order: Eulipotyphla + scientific_name: Sorex araneus status: 3-data_done - taxon_id: '121349' + taxon_id: '42254' techs: 10X: status: 4 url: '#' BN: status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sorex_araneus/mSorAra1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Erythrolamprus_reginae/rEryReg1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sorex_araneus/mSorAra1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -1999,28 +1936,28 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Erythrolamprus_reginae/rEryReg1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sorex_araneus/mSorAra1/genomic_data/pacbio/ trio: '' - vglId: rEryReg1 - vgp_phase: phase2 + vglId: mSorAra1 + vgp_phase: phase3 - asm: '#' - class: Actinopterygii,Bony fishes - common_name: midwater eelpout - family: Zoarcidae + class: Mammalia,mammals + common_name: grey whale + family: Eschrichtiidae hub: vgl - order: Perciformes - scientific_name: Melanostigma pammelas + order: Artiodactyla + scientific_name: Eschrichtius robustus status: 2-data_progress - taxon_id: '557412' + taxon_id: '9764' techs: 10X: status: 4 url: '#' BN: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Eschrichtius_robustus/mEscRob1/genomic_data/bionano/ HiC: - status: 0 + status: 1 url: '#' Ilm: status: 4 @@ -2029,29 +1966,30 @@ toc: status: 4 url: '#' PB: - status: 1 + status: 2 url: '#' - vglId: fMelPam1 + trio: '' + vglId: mEscRob1 vgp_phase: phase2 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_009819705.1 - class: Actinopterygii,Bony fishes - common_name: Atlantic halibut - family: Pleuronectidae - hub: vgl - order: Pleuronectiformes - scientific_name: Hippoglossus hippoglossus - status: 8-NCBI - taxon_id: '8267' +- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Jaculus_jaculus/mJacJac1/assembly_curated/ + class: Mammalia,mammals + common_name: lesser Egyptian jerboa + family: Dipodidae + hub: others + order: Rodentia + scientific_name: Jaculus jaculus + status: 7-asm_curated + taxon_id: '51337' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Hippoglossus_hippoglossus/fHipHip1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Jaculus_jaculus/mJacJac1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Hippoglossus_hippoglossus/fHipHip1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Jaculus_jaculus/mJacJac1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Hippoglossus_hippoglossus/fHipHip1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Jaculus_jaculus/mJacJac1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -2060,22 +1998,22 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Hippoglossus_hippoglossus/fHipHip1/genomic_data/pacbio/ - trio: '' - vglId: fHipHip1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Jaculus_jaculus/mJacJac1/genomic_data/pacbio/ + trio: mJacJac2/mJacJac3 + vglId: mJacJac1 vgp_phase: phase1 - asm: '#' - class: Actinopterygii,Bony fishes - common_name: barbel - family: Cyprinidae - hub: others - order: Cypriniformes - scientific_name: Barbus barbus + class: Aves,birds + common_name: great crested grebe + family: Podicipedidae + hub: vgl + order: Podicipediformes + scientific_name: Podiceps cristatus status: 2-data_progress - taxon_id: '40830' + taxon_id: '345573' techs: 10X: - status: 0 + status: 4 url: '#' BN: status: 0 @@ -2084,36 +2022,35 @@ toc: status: 0 url: '#' Ilm: - status: 0 + status: 4 url: '#' ONT: - status: 0 + status: 4 url: '#' PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Barbus_barbus/fBarBab1/genomic_data/pacbio/ - trio: '' - vglId: fBarBab1 - vgp_phase: phase2 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_903797595.2 + status: 0 + url: '#' + vglId: bPodCri1 + vgp_phase: phase1 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_013368605.1 class: Aves,birds - common_name: European robin - family: Turdidae - hub: others - order: Passeriformes - scientific_name: Erithacus rubecula + common_name: great potoo + family: Nyctibiidae + hub: vgl + order: Caprimulgiformes + scientific_name: Nyctibius grandis status: 8-NCBI - taxon_id: '37610' + taxon_id: '48427' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Erithacus_rubecula/bEriRub2/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Nyctibius_grandis/bNycGra1/genomic_data/10x/ BN: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Nyctibius_grandis/bNycGra1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Erithacus_rubecula/bEriRub2/genomic_data/dovetail/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Nyctibius_grandis/bNycGra1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -2122,29 +2059,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Erithacus_rubecula/bEriRub2/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Nyctibius_grandis/bNycGra1/genomic_data/pacbio/ trio: '' - vglId: bEriRub2 - vgp_phase: phase2 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_016695395.2 + vglId: bNycGra1 + vgp_phase: phase1 +- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rhinolophus_sinicus/mRhiSin1/assembly_curated/ class: Mammalia,mammals - common_name: human - family: Hominidae + common_name: Chinese rufous horseshoe bat + family: Rhinolophidae hub: vgl - order: Primates - scientific_name: Homo sapiens - status: 8-NCBI - taxon_id: '9606' + order: Chiroptera + scientific_name: Rhinolophus sinicus + status: 7-asm_curated + taxon_id: '89399' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Homo_sapiens/mHomSap3/genomic_data/10x/ + status: 4 + url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Homo_sapiens/mHomSap3/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rhinolophus_sinicus/mRhiSin1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Homo_sapiens/mHomSap3/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rhinolophus_sinicus/mRhiSin1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -2153,29 +2090,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Homo_sapiens/mHomSap3/genomic_data/pacbio/ - trio: mHomSap1/mHomSap2 - vglId: mHomSap3 - vgp_phase: phase1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rhinolophus_sinicus/mRhiSin1/genomic_data/pacbio/ + trio: '' + vglId: mRhiSin1 + vgp_phase: phase4 - asm: '#' class: Aves,birds - common_name: lammergeier - family: Accipitridae + common_name: song sparrow + family: Passerellidae hub: vgl - order: Falconiformes - scientific_name: Gypaetus barbatus - status: 4-asm_progress - taxon_id: '33610' + order: Passeriformes + scientific_name: Melospiza melodia + status: 2-data_progress + taxon_id: '44397' techs: 10X: status: 4 url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Gypaetus_barbatus/bGypBar2/genomic_data/bionano/ + url: '#' HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Gypaetus_barbatus/bGypBar2/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Melospiza_melodia/bMelMel1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -2183,29 +2120,29 @@ toc: status: 4 url: '#' PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Gypaetus_barbatus/bGypBar2/genomic_data/pacbio/ + status: 2 + url: '#' trio: '' - vglId: bGypBar2 + vglId: bMelMel1 vgp_phase: phase3 -- asm: '#' - class: Amphibia,amphibians - common_name: Fleay's barred frog - family: Myobatrachidae - hub: vgl - order: Anura - scientific_name: Mixophyes fleayi - status: 0-data_queued - taxon_id: '000000' - techs: - 10X: - status: 4 - url: '#' - BN: - status: 0 +- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pelecanus_crispus/bPelCri1/assembly_vgp_standard_2.1/ + class: Aves,birds + common_name: Dalmatian pelican + family: Pelecanidae + hub: others + order: Pelecaniformes + scientific_name: Pelecanus crispus + status: 5-asm_done + taxon_id: '36300' + techs: + 10X: + status: 4 url: '#' + BN: + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pelecanus_crispus/bPelCri1/genomic_data/bionano/ HiC: - status: 0 + status: 4 url: '#' Ilm: status: 4 @@ -2214,29 +2151,61 @@ toc: status: 4 url: '#' PB: - status: 0 + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pelecanus_crispus/bPelCri1/genomic_data/pacbio/ + trio: '' + vglId: bPelCri1 + vgp_phase: phase1 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_012275275.1 + class: Aves,birds + common_name: budgerigar + family: Psittaculidae + hub: vgl + order: Psittaciformes + scientific_name: Melopsittacus undulatus + status: 8-NCBI + taxon_id: '13146' + techs: + 10X: + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Melopsittacus_undulatus/bMelUnd1/genomic_data/10x/ + BN: + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Melopsittacus_undulatus/bMelUnd1/genomic_data/bionano/ + HiC: + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Melopsittacus_undulatus/bMelUnd1/genomic_data/arima/ + Ilm: + status: 4 url: '#' - vglId: aMixFle1 - vgp_phase: phase3 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_017639745.1 - class: Actinopterygii,Bony fishes - common_name: Boeseman's rainbowfish - family: Melanotaeniidae - hub: others - order: Atheriniformes - scientific_name: Melanotaenia boesemani + ONT: + status: 4 + url: '#' + PB: + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Melopsittacus_undulatus/bMelUnd1/genomic_data/pacbio/ + trio: bMelUnd2/bMelUnd3 + vglId: bMelUnd1 + vgp_phase: phase2 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_009819655.1 + class: Aves,birds + common_name: blackcap + family: Sylviidae + hub: vgl + order: Passeriformes + scientific_name: Sylvia atricapilla status: 8-NCBI - taxon_id: '1250792' + taxon_id: '48155' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Melanotaenia_boesemani/fMelBoe1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sylvia_atricapilla/bSylAtr1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Melanotaenia_boesemani/fMelBoe1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sylvia_atricapilla/bSylAtr1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Melanotaenia_boesemani/fMelBoe1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sylvia_atricapilla/bSylAtr1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -2245,19 +2214,19 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Melanotaenia_boesemani/fMelBoe1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sylvia_atricapilla/bSylAtr1/genomic_data/pacbio/ trio: '' - vglId: fMelBoe1 - vgp_phase: phase1 + vglId: bSylAtr1 + vgp_phase: phase4 - asm: '#' class: Mammalia,mammals - common_name: Philippine flying lemur - family: Cynocephalidae + common_name: pig-tailed macaque + family: Cercopithecidae hub: vgl - order: Dermoptera - scientific_name: Cynocephalus volans - status: 1-DNA_isolation - taxon_id: '110931' + order: Primates + scientific_name: Macaca nemestrina + status: 0-data_queued + taxon_id: '9545' techs: 10X: status: 4 @@ -2277,27 +2246,27 @@ toc: PB: status: 0 url: '#' - vglId: mCynVol1 - vgp_phase: phase1 -- asm: '#' - class: Mammalia,mammals - common_name: false killer whale - family: Delphinidae + vglId: mMacNem1 + vgp_phase: phase2 +- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Nomonyx_dominicus/bNomDom1/assembly_vgp_standard_1.5/ + class: Aves,birds + common_name: Masked duck + family: Anatidae hub: vgl - order: Artiodactyla - scientific_name: Pseudorca crassidens - status: 2-data_progress - taxon_id: '82174' + order: Anseriformes + scientific_name: Nomonyx dominicus + status: 5-asm_done + taxon_id: '555276' techs: 10X: status: 4 url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pseudorca_crassidens/mPseCra1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Nomonyx_dominicus/bNomDom1/genomic_data/bionano/ HiC: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Nomonyx_dominicus/bNomDom1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -2306,26 +2275,26 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pseudorca_crassidens/mPseCra1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Nomonyx_dominicus/bNomDom1/genomic_data/pacbio/ trio: '' - vglId: mPseCra1 - vgp_phase: phase2 + vglId: bNomDom1 + vgp_phase: phase3 - asm: '#' - class: Amphibia,amphibians - common_name: tailed frog - family: Ascaphidae + class: Mammalia,mammals + common_name: North Atlantic right whale + family: Balaenidae hub: vgl - order: Anura - scientific_name: Ascaphus truei - status: 2-data_progress - taxon_id: '8439' + order: Artiodactyla + scientific_name: Eubalaena glacialis + status: 3-data_done + taxon_id: '27606' techs: 10X: status: 4 url: '#' BN: - status: 3 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Eubalaena_glacialis/mEubGla1/genomic_data/bionano/ HiC: status: 1 url: '#' @@ -2336,29 +2305,30 @@ toc: status: 4 url: '#' PB: - status: 2 - url: '#' - vglId: aAscTru4 - vgp_phase: phase1 -- asm: '#' - class: Mammalia,mammals - common_name: slow loris - family: Lorisidae - hub: vgl - order: Primates - scientific_name: Nycticebus coucang - status: 2-data_progress - taxon_id: '9470' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Eubalaena_glacialis/mEubGla1/genomic_data/pacbio/ + trio: '' + vglId: mEubGla1 + vgp_phase: phase2 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_901001135.2 + class: Amphibia,amphibians + common_name: two-lined caecilian + family: Rhinatrematidae + hub: others + order: Apoda + scientific_name: Rhinatrema bivittatum + status: 8-NCBI + taxon_id: '194408' techs: 10X: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rhinatrema_bivittatum/aRhiBiv1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Nycticebus_coucang/mNycCou1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rhinatrema_bivittatum/aRhiBiv1/genomic_data/bionano/ HiC: status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rhinatrema_bivittatum/aRhiBiv1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -2366,30 +2336,30 @@ toc: status: 4 url: '#' PB: - status: 2 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rhinatrema_bivittatum/aRhiBiv1/genomic_data/pacbio/ trio: '' - vglId: mNycCou1 + vglId: aRhiBiv1 vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_902686445.2 - class: Mammalia,mammals - common_name: gray squirrel - family: Sciuridae +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_905171665.1 + class: Actinopterygii,Bony fishes + common_name: Atlantic horse mackerel + family: Carangidae hub: others - order: Rodentia - scientific_name: Sciurus carolinensis + order: Carangiformes + scientific_name: Trachurus trachurus status: 8-NCBI - taxon_id: '30640' + taxon_id: '36212' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sciurus_carolinensis/mSciCar1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Trachurus_trachurus/fTraTra1/genomic_data/10x/ BN: status: 4 url: '#' HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sciurus_carolinensis/mSciCar1/genomic_data/dovetail/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Trachurus_trachurus/fTraTra1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -2398,29 +2368,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sciurus_carolinensis/mSciCar1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Trachurus_trachurus/fTraTra1/genomic_data/pacbio/ trio: '' - vglId: mSciCar1 - vgp_phase: phase4 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_013368605.1 + vglId: fTraTra1 + vgp_phase: phase2 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_009650955.1 class: Aves,birds - common_name: great potoo - family: Nyctibiidae + common_name: New Caledonian crow + family: Corvidae hub: vgl - order: Caprimulgiformes - scientific_name: Nyctibius grandis + order: Passeriformes + scientific_name: Corvus moneduloides status: 8-NCBI - taxon_id: '48427' + taxon_id: '1196302' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Nyctibius_grandis/bNycGra1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Corvus_moneduloides/bCorMon1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Nyctibius_grandis/bNycGra1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Corvus_moneduloides/bCorMon1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Nyctibius_grandis/bNycGra1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Corvus_moneduloides/bCorMon1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -2429,29 +2399,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Nyctibius_grandis/bNycGra1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Corvus_moneduloides/bCorMon1/genomic_data/pacbio/ trio: '' - vglId: bNycGra1 - vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_900324465.3 - class: Actinopterygii,Bony fishes - common_name: climbing perch - family: Anabantidae - hub: vgl - order: Anabantiformes - scientific_name: Anabas testudineus + vglId: bCorMon1 + vgp_phase: phase4 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_014839835.1 + class: Aves,birds + common_name: Downy woodpecker + family: Picidae + hub: others + order: Piciformes + scientific_name: Dryobates pubescens status: 8-NCBI - taxon_id: '64144' + taxon_id: '118200' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Anabas_testudineus/fAnaTes1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dryobates_pubescens/bDryPub1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Anabas_testudineus/fAnaTes1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dryobates_pubescens/bDryPub1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Anabas_testudineus/fAnaTes1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dryobates_pubescens/bDryPub1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -2460,29 +2430,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Anabas_testudineus/fAnaTes1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dryobates_pubescens/bDryPub1/genomic_data/pacbio/ trio: '' - vglId: fAnaTes1 - vgp_phase: phase1 -- asm: '#' - class: Actinopterygii,Bony fishes - common_name: delta smelt - family: Osmeridae + vglId: bDryPub1 + vgp_phase: phase2 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_008822115.3 + class: Aves,birds + common_name: zebra finch + family: Estrildidae hub: vgl - order: Osmeriformes - scientific_name: Hypomesus transpacificus - status: 4-asm_progress - taxon_id: '137520' + order: Passeriformes + scientific_name: Taeniopygia guttata + status: 8-NCBI + taxon_id: '59729' techs: 10X: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Taeniopygia_guttata/bTaeGut2/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Hypomesus_transpacificus/fHypTra1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Taeniopygia_guttata/bTaeGut2/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Hypomesus_transpacificus/fHypTra1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Taeniopygia_guttata/bTaeGut2/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -2491,29 +2461,29 @@ toc: url: '#' PB: status: 1 - url: '#' - trio: '' - vglId: fHypTra1 - vgp_phase: phase3 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_905171765.1 - class: Amphibia,amphibians - common_name: common toad - family: Bufonidae - hub: others - order: Anura - scientific_name: Bufo bufo - status: 8-NCBI - taxon_id: '8384' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Taeniopygia_guttata/bTaeGut2/genomic_data/pacbio/ + trio: bTaeGut3/bTaeGut4 + vglId: bTaeGut2 + vgp_phase: phase1 +- asm: '#' + class: Aves,birds + common_name: Common starling + family: Sturnidae + hub: vgl + order: Passeriformes + scientific_name: Sturnus vulgaris + status: 1-DNA_isolation + taxon_id: '9172' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Bufo_bufo/aBufBuf1/genomic_data/10x/ + status: 4 + url: '#' BN: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Bufo_bufo/aBufBuf1/genomic_data/bionano/ + status: 0 + url: '#' HiC: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Bufo_bufo/aBufBuf1/genomic_data/arima/ + status: 0 + url: '#' Ilm: status: 4 url: '#' @@ -2521,30 +2491,29 @@ toc: status: 4 url: '#' PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Bufo_bufo/aBufBuf1/genomic_data/pacbio/ - trio: '' - vglId: aBufBuf1 - vgp_phase: phase1 -- asm: '#' - class: Mammalia,mammals - common_name: Chinese pangolin - family: Manidae + status: 0 + url: '#' + vglId: bStuVul1 + vgp_phase: phase2 +- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dendrocygna_viduata/bDenVid1/assembly_vgp_standard_1.5/ + class: Aves,birds + common_name: white-faced whistling-duck + family: Anatidae hub: vgl - order: Pholidota - scientific_name: Manis pentadactyla - status: 2-data_progress - taxon_id: '143292' + order: Anseriformes + scientific_name: Dendrocygna viduata + status: 5-asm_done + taxon_id: '8876' techs: 10X: status: 4 url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Manis_pentadactyla/mManPen7/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dendrocygna_viduata/bDenVid1/genomic_data/bionano/ HiC: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dendrocygna_viduata/bDenVid1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -2552,26 +2521,26 @@ toc: status: 4 url: '#' PB: - status: 2 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dendrocygna_viduata/bDenVid1/genomic_data/pacbio/ trio: '' - vglId: mManPen7 - vgp_phase: phase1 + vglId: bDenVid1 + vgp_phase: phase3 - asm: '#' - class: Reptilia,reptiles - common_name: Atlantic ridley - family: Cheloniidae + class: Amphibia,amphibians + common_name: rocket frog + family: Dendrobatidae hub: vgl - order: Testudines - scientific_name: Lepidochelys kempii - status: 0-data_queued - taxon_id: '8472' + order: Anura + scientific_name: Anomaloglossus baeobatrachus + status: 2-data_progress + taxon_id: '238106' techs: 10X: status: 4 url: '#' BN: - status: 0 + status: 1 url: '#' HiC: status: 0 @@ -2585,28 +2554,27 @@ toc: PB: status: 0 url: '#' - vglId: rLepKem1 - vgp_phase: phase3 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_900634415.1 - class: Actinopterygii,Bony fishes - common_name: channel bull blenny - family: Bovichtidae - hub: others - order: Perciformes - scientific_name: Cottoperca gobio + vglId: aAnoBae1 + vgp_phase: phase2 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_004126475.2 + class: Mammalia,mammals + common_name: pale spear-nosed bat + family: Phyllostomidae + hub: vgl + order: Chiroptera + scientific_name: Phyllostomus discolor status: 8-NCBI - taxon_id: '56716' + taxon_id: '89673' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cottoperca_gobio/fCotGob3/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Phyllostomus_discolor/mPhyDis1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cottoperca_gobio/fCotGob3/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Phyllostomus_discolor/mPhyDis1/genomic_data/bionano/ HiC: - link: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cottoperca_gobio/fCotGob2/genomic_data/arima/ status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Phyllostomus_discolor/mPhyDis1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -2615,50 +2583,50 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cottoperca_gobio/fCotGob3/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Phyllostomus_discolor/mPhyDis1/genomic_data/pacbio/ trio: '' - vglId: fCotGob3 + vglId: mPhyDis1 vgp_phase: phase1 -- asm: '#' - class: Mammalia,mammals - common_name: gray short-tailed opossum - family: Didelphidae - hub: vgl - order: Didelphimorphia - scientific_name: Monodelphis domestica - status: 2-data_progress - taxon_id: '13616' +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_910591455.1 + class: Actinopterygii,Bony fishes + common_name: rock gunnel + family: Pholidae + hub: others + order: Perciformes + scientific_name: Pholis gunnellus + status: 8-NCBI + taxon_id: '56726' techs: 10X: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pholis_gunnellus/fPhoGun1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Monodelphis_domestica/mMonDom1/genomic_data/bionano/ + url: '#' HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Monodelphis_domestica/mMonDom1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pholis_gunnellus/fPhoGun1/genomic_data/arima/ Ilm: - status: 4 + status: 1 url: '#' ONT: - status: 4 + status: 1 url: '#' PB: - status: 2 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pholis_gunnellus/fPhoGun1/genomic_data/pacbio/ trio: '' - vglId: mMonDom1 - vgp_phase: phase1 + vglId: fPhoGun1 + vgp_phase: phase2 - asm: '#' - class: Amphibia,amphibians - common_name: rufous frog - family: Leptodactylidae + class: Aves,birds + common_name: chicken + family: Phasianidae hub: vgl - order: Anura - scientific_name: Leptodactylus fuscus - status: 2-data_progress - taxon_id: '238119' + order: Galliformes + scientific_name: Gallus gallus + status: 7-asm_curated + taxon_id: '9031' techs: 10X: status: 4 @@ -2667,7 +2635,7 @@ toc: status: 1 url: '#' HiC: - status: 2 + status: 1 url: '#' Ilm: status: 4 @@ -2676,59 +2644,60 @@ toc: status: 4 url: '#' PB: - status: 0 + status: 1 url: '#' - vglId: aLepFus1 - vgp_phase: phase2 -- asm: '#' - class: Aves,birds - common_name: white-breasted nuthatch - family: Sittidae - hub: vgl - order: Passeriformes - scientific_name: Sitta carolinensis - status: 0-data_queued - taxon_id: '50250' + vglId: bGalGal5 + vgp_phase: other +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_910589615.1 + class: Actinopterygii,Bony fishes + common_name: longspined bullhead + family: Cottidae + hub: others + order: Perciformes + scientific_name: Taurulus bubalis + status: 8-NCBI + taxon_id: '61643' techs: 10X: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Taurulus_bubalis/fTauBub2/genomic_data/10x/ BN: - status: 0 + status: 1 url: '#' HiC: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Taurulus_bubalis/fTauBub2/genomic_data/arima/ Ilm: - status: 4 + status: 1 url: '#' ONT: - status: 4 + status: 1 url: '#' PB: - status: 0 - url: '#' - vglId: bSitCar1 + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Taurulus_bubalis/fTauBub2/genomic_data/pacbio/ + trio: '' + vglId: fTauBub2 vgp_phase: phase2 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_009769525.1 - class: Aves,birds - common_name: yellow-throated sandgrouse - family: Pteroclidae +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_007399415.2 + class: Reptilia,reptiles + common_name: Goodes thornscrub tortoise + family: Testudinidae hub: vgl - order: Pterocliformes - scientific_name: Pterocles gutturalis + order: Testudines + scientific_name: Gopherus evgoodei status: 8-NCBI - taxon_id: '240206' + taxon_id: '1825980' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pterocles_gutturalis/bPteGut1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Gopherus_evgoodei/rGopEvg1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pterocles_gutturalis/bPteGut1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Gopherus_evgoodei/rGopEvg1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pterocles_gutturalis/bPteGut1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Gopherus_evgoodei/rGopEvg1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -2737,29 +2706,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pterocles_gutturalis/bPteGut1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Gopherus_evgoodei/rGopEvg1/genomic_data/pacbio/ trio: '' - vglId: bPteGut1 + vglId: rGopEvg1 vgp_phase: phase1 -- asm: '#' - class: Aves,birds - common_name: Seychelles magpie-robin - family: Muscicapidae +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_009769535.1 + class: Reptilia,reptiles + common_name: Western terrestrial garter snake + family: Colubridae hub: vgl - order: Passeriformes - scientific_name: Copsychus sechellarum - status: 2-data_progress - taxon_id: '797021' + order: Squamata + scientific_name: Thamnophis elegans + status: 8-NCBI + taxon_id: '35005' techs: 10X: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Thamnophis_elegans/rThaEle1/genomic_data/10x/ BN: - status: 2 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Thamnophis_elegans/rThaEle1/genomic_data/bionano/ HiC: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Thamnophis_elegans/rThaEle1/genomic_data/dovetail/ Ilm: status: 4 url: '#' @@ -2767,29 +2736,30 @@ toc: status: 4 url: '#' PB: - status: 0 - url: '#' - vglId: bCopSec1 - vgp_phase: phase2 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_015220715.1 + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Thamnophis_elegans/rThaEle1/genomic_data/pacbio/ + trio: '' + vglId: rThaEle1 + vgp_phase: phase1 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_018492685.1 class: Actinopterygii,Bony fishes - common_name: red-bellied piranha - family: Serrasalmidae - hub: others - order: Characiformes - scientific_name: Pygocentrus nattereri + common_name: American shad + family: Clupeidae + hub: vgl + order: Clupeiformes + scientific_name: Alosa sapidissima status: 8-NCBI - taxon_id: '42514' + taxon_id: '34773' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pygocentrus_nattereri/fPygNat1/genomic_data/10x/ + status: 4 + url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pygocentrus_nattereri/fPygNat1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Alosa_sapidissima/fAloSap1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pygocentrus_nattereri/fPygNat1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Alosa_sapidissima/fAloSap1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -2798,29 +2768,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pygocentrus_nattereri/fPygNat1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Alosa_sapidissima/fAloSap1/genomic_data/pacbio/ trio: '' - vglId: fPygNat1 - vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_017639555.1 - class: Aves,birds - common_name: maguari stork - family: Ciconiidae + vglId: fAloSap1 + vgp_phase: phase2 +- asm: '#' + class: Actinopterygii,Bony fishes + common_name: Adriatic sturgeon + family: Acipenseridae hub: vgl - order: Ciconiiformes - scientific_name: Ciconia maguari - status: 8-NCBI - taxon_id: '52777' + order: Acipenseriformes + scientific_name: Acipenser naccarii + status: 2-data_progress + taxon_id: '42330' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Ciconia_maguari/bCicMag1/genomic_data/10x/ + status: 4 + url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Ciconia_maguari/bCicMag1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Acipenser_naccarii/fAciNac1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Ciconia_maguari/bCicMag1/genomic_data/arima/ + url: '#' Ilm: status: 4 url: '#' @@ -2828,30 +2798,30 @@ toc: status: 4 url: '#' PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Ciconia_maguari/bCicMag1/genomic_data/pacbio/ + status: 0 + url: '#' trio: '' - vglId: bCicMag1 - vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_011100635.1 - class: Mammalia,mammals - common_name: common brushtail - family: Phalangeridae + vglId: fAciNac1 + vgp_phase: phase4 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_009769525.1 + class: Aves,birds + common_name: yellow-throated sandgrouse + family: Pteroclidae hub: vgl - order: Diprotodontia - scientific_name: Trichosurus vulpecula + order: Pterocliformes + scientific_name: Pterocles gutturalis status: 8-NCBI - taxon_id: '9337' + taxon_id: '240206' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Trichosurus_vulpecula/mTriVul1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pterocles_gutturalis/bPteGut1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Trichosurus_vulpecula/mTriVul1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pterocles_gutturalis/bPteGut1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Trichosurus_vulpecula/mTriVul1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pterocles_gutturalis/bPteGut1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -2860,29 +2830,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Trichosurus_vulpecula/mTriVul1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pterocles_gutturalis/bPteGut1/genomic_data/pacbio/ trio: '' - vglId: mTriVul1 + vglId: bPteGut1 vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_902459505.2 - class: Amphibia,amphibians - common_name: Gabon caecilian - family: Dermophiidae - hub: others - order: Gymnophiona - scientific_name: Geotrypetes seraphini - status: 8-NCBI - taxon_id: '260995' +- asm: '#' + class: Mammalia,mammals + common_name: American pika + family: Ochotonidae + hub: vgl + order: Lagomorpha + scientific_name: Ochotona princeps + status: 2-data_progress + taxon_id: '9978' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Geotrypetes_seraphini/aGeoSer1/genomic_data/10x/ + status: 4 + url: '#' BN: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Geotrypetes_seraphini/aGeoSer1/genomic_data/bionano/ + status: 0 + url: '#' HiC: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Geotrypetes_seraphini/aGeoSer1/genomic_data/dovetail/ + status: 0 + url: '#' Ilm: status: 4 url: '#' @@ -2890,26 +2860,25 @@ toc: status: 4 url: '#' PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Geotrypetes_seraphini/aGeoSer1/genomic_data/pacbio/ - trio: '' - vglId: aGeoSer1 + status: 2 + url: '#' + vglId: mOchPri1 vgp_phase: phase1 - asm: '#' - class: Aves,birds - common_name: Common canary - family: Fringillidae + class: Enteropneusta,jawless,Agnatha + common_name: acorn worm + family: Harrimaniidae hub: vgl - order: Passeriformes - scientific_name: Serinus canaria - status: 0-data_queued - taxon_id: '9135' + order: Enteropneusta + scientific_name: Saccoglossus kowalevskii + status: 2-data_progress + taxon_id: '10224' techs: 10X: status: 4 url: '#' BN: - status: 0 + status: 2 url: '#' HiC: status: 0 @@ -2923,7 +2892,38 @@ toc: PB: status: 0 url: '#' - vglId: bSerCaa1 + vglId: kSacKow2 + vgp_phase: phase2 +- asm: '#' + class: Actinopterygii,Bony fishes + common_name: barbel + family: Cyprinidae + hub: others + order: Cypriniformes + scientific_name: Barbus barbus + status: 2-data_progress + taxon_id: '40830' + techs: + 10X: + status: 0 + url: '#' + BN: + status: 0 + url: '#' + HiC: + status: 0 + url: '#' + Ilm: + status: 0 + url: '#' + ONT: + status: 0 + url: '#' + PB: + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Barbus_barbus/fBarBab1/genomic_data/pacbio/ + trio: '' + vglId: fBarBab1 vgp_phase: phase2 - asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_902150065.1 class: Actinopterygii,Bony fishes @@ -2956,25 +2956,25 @@ toc: trio: '' vglId: fMyrMur1 vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_015220805.1 +- asm: '#' class: Aves,birds - common_name: Red-fronted tinkerbird - family: Lybiidae + common_name: white-breasted nuthatch + family: Sittidae hub: vgl - order: Piciformes - scientific_name: Pogoniulus pusillus - status: 8-NCBI - taxon_id: '488313' + order: Passeriformes + scientific_name: Sitta carolinensis + status: 0-data_queued + taxon_id: '50250' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pogoniulus_pusillus/bPogPus1/genomic_data/10x/ + status: 4 + url: '#' BN: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pogoniulus_pusillus/bPogPus1/genomic_data/bionano/ + status: 0 + url: '#' HiC: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pogoniulus_pusillus/bPogPus1/genomic_data/arima/ + status: 0 + url: '#' Ilm: status: 4 url: '#' @@ -2982,30 +2982,29 @@ toc: status: 4 url: '#' PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pogoniulus_pusillus/bPogPus1/genomic_data/pacbio/ - trio: '' - vglId: bPogPus1 + status: 0 + url: '#' + vglId: bSitCar1 vgp_phase: phase2 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_903992535.2 - class: Mammalia,mammals - common_name: Eurasian water vole - family: Cricetidae +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_902148845.1 + class: Actinopterygii,Bony fishes + common_name: jewelled blenny + family: Blenniidae hub: others - order: Rodentia - scientific_name: Arvicola amphibius + order: Blenniiformes + scientific_name: Salarias fasciatus status: 8-NCBI - taxon_id: '1047088' + taxon_id: '181472' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Arvicola_amphibius/mArvAmp1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Salarias_fasciatus/fSalaFa1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Arvicola_amphibius/mArvAmp1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Salarias_fasciatus/fSalaFa1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Arvicola_amphibius/mArvAmp1/genomic_data/dovetail/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Salarias_fasciatus/fSalaFa1/genomic_data/dovetail/ Ilm: status: 4 url: '#' @@ -3014,29 +3013,60 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Arvicola_amphibius/mArvAmp1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Salarias_fasciatus/fSalaFa1/genomic_data/pacbio/ trio: '' - vglId: mArvAmp1 + vglId: fSalaFa1 vgp_phase: phase1 -- asm: '#' +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_903797595.2 class: Aves,birds - common_name: song sparrow - family: Passerellidae - hub: vgl + common_name: European robin + family: Turdidae + hub: others order: Passeriformes - scientific_name: Melospiza melodia - status: 2-data_progress - taxon_id: '44397' + scientific_name: Erithacus rubecula + status: 8-NCBI + taxon_id: '37610' techs: 10X: + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Erithacus_rubecula/bEriRub2/genomic_data/10x/ + BN: status: 4 url: '#' - BN: + HiC: status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Erithacus_rubecula/bEriRub2/genomic_data/dovetail/ + Ilm: + status: 4 + url: '#' + ONT: + status: 4 url: '#' + PB: + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Erithacus_rubecula/bEriRub2/genomic_data/pacbio/ + trio: '' + vglId: bEriRub2 + vgp_phase: phase3 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_014108415.1 + class: Mammalia,mammals + common_name: Pallas's mastiff bat + family: Molossidae + hub: others + order: Chiroptera + scientific_name: Molossus molossus + status: 8-NCBI + taxon_id: '27622' + techs: + 10X: + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Molossus_molossus/mMolMol1/genomic_data/10x/ + BN: + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Molossus_molossus/mMolMol1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Melospiza_melodia/bMelMel1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Molossus_molossus/mMolMol1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -3044,30 +3074,61 @@ toc: status: 4 url: '#' PB: - status: 2 + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Molossus_molossus/mMolMol1/genomic_data/pacbio/ + trio: '' + vglId: mMolMol1 + vgp_phase: phase2 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_017976425.1 + class: Enteropneusta,Bony fishes + common_name: banded archerfish + family: Toxotidae + hub: others + order: '' + scientific_name: Toxotes jaculatrix + status: 8-NCBI + taxon_id: '941984' + techs: + 10X: + status: 4 url: '#' + BN: + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Toxotes_jaculatrix/fToxJac2/genomic_data/bionano/ + HiC: + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Toxotes_jaculatrix/fToxJac2/genomic_data/arima/ + Ilm: + status: 4 + url: '#' + ONT: + status: 4 + url: '#' + PB: + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Toxotes_jaculatrix/fToxJac2/genomic_data/pacbio/ trio: '' - vglId: bMelMel1 - vgp_phase: phase3 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_007474595.2 + vglId: fToxJac2 + vgp_phase: phase1 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_016695395.2 class: Mammalia,mammals - common_name: Canada lynx - family: Felidae + common_name: human + family: Hominidae hub: vgl - order: Carnivora - scientific_name: Lynx canadensis + order: Primates + scientific_name: Homo sapiens status: 8-NCBI - taxon_id: '61383' + taxon_id: '9606' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lynx_canadensis/mLynCan4/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Homo_sapiens/mHomSap3/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lynx_canadensis/mLynCan4/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Homo_sapiens/mHomSap3/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lynx_canadensis/mLynCan4/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Homo_sapiens/mHomSap3/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -3076,9 +3137,9 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lynx_canadensis/mLynCan4/genomic_data/pacbio/ - trio: '' - vglId: mLynCan4 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Homo_sapiens/mHomSap3/genomic_data/pacbio/ + trio: mHomSap1/mHomSap2 + vglId: mHomSap3 vgp_phase: phase1 - asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_004115215.2 class: Mammalia,mammals @@ -3111,25 +3172,25 @@ toc: trio: '' vglId: mOrnAna1 vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_009769545.1 - class: Actinopterygii,Bony fishes - common_name: lumpfish - family: Cyclopteridae +- asm: '#' + class: Reptilia,reptiles + common_name: olive python + family: Pythonidae hub: vgl - order: Scorpaeniformes - scientific_name: Cyclopterus lumpus - status: 8-NCBI - taxon_id: '8103' + order: Squamata + scientific_name: Liasis olivaceus + status: 2-data_progress + taxon_id: '283338' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cyclopterus_lumpus/fCycLum1/genomic_data/10x/ + status: 4 + url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cyclopterus_lumpus/fCycLum1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Liasis_olivaceus/rLiaOli1/genomic_data/bionano/ HiC: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cyclopterus_lumpus/fCycLum1/genomic_data/arima/ + status: 0 + url: '#' Ilm: status: 4 url: '#' @@ -3137,30 +3198,30 @@ toc: status: 4 url: '#' PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cyclopterus_lumpus/fCycLum1/genomic_data/pacbio/ + status: 0 + url: '#' trio: '' - vglId: fCycLum1 - vgp_phase: phase1 + vglId: rLiaOli1 + vgp_phase: phase2 - asm: '#' - class: Mammalia,mammals - common_name: Bolivian squirrel monkey - family: Cebidae + class: Aves,birds + common_name: black-legged kittiwake + family: Laridae hub: vgl - order: Primates - scientific_name: Saimiri boliviensis + order: Charadriiformes + scientific_name: Rissa tridactyla status: 2-data_progress - taxon_id: '27679' + taxon_id: '75485' techs: 10X: status: 4 url: '#' BN: - status: 2 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rissa_tridactyla/bRisTri1/genomic_data/bionano/ HiC: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rissa_tridactyla/bRisTri1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -3168,29 +3229,30 @@ toc: status: 4 url: '#' PB: - status: 0 + status: 2 url: '#' - vglId: mSaiBol1 - vgp_phase: phase3 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_900880675.2 - class: Actinopterygii,Bony fishes - common_name: gilthead seabream - family: Sparidae - hub: others - order: Spariformes - scientific_name: Sparus aurata + trio: '' + vglId: bRisTri1 + vgp_phase: phase2 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_009819825.1 + class: Aves,birds + common_name: Red-legged seriema + family: Cariamidae + hub: vgl + order: Cariamiformes + scientific_name: Cariama cristata status: 8-NCBI - taxon_id: '8175' + taxon_id: '54380' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sparus_aurata/fSpaAur1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cariama_cristata/bCarCri1/genomic_data/10x/ BN: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cariama_cristata/bCarCri1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sparus_aurata/fSpaAur1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cariama_cristata/bCarCri1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -3199,29 +3261,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sparus_aurata/fSpaAur1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cariama_cristata/bCarCri1/genomic_data/pacbio/ trio: '' - vglId: fSpaAur1 + vglId: bCarCri1 vgp_phase: phase1 -- asm: '#' - class: Mammalia,mammals - common_name: Blainville's beaked whale - family: Ziphiidae +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_009764595.1 + class: Aves,birds + common_name: common yellowthroat + family: Parulidae hub: vgl - order: Artiodactyla - scientific_name: Mesoplodon densirostris - status: 3-data_done - taxon_id: '48708' + order: Passeriformes + scientific_name: Geothlypis trichas + status: 8-NCBI + taxon_id: '135433' techs: 10X: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Geothlypis_trichas/bGeoTri1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Mesoplodon_densirostris/mMesDen1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Geothlypis_trichas/bGeoTri1/genomic_data/bionano/ HiC: status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Geothlypis_trichas/bGeoTri1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -3230,19 +3292,19 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Mesoplodon_densirostris/mMesDen1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Geothlypis_trichas/bGeoTri1/genomic_data/pacbio/ trio: '' - vglId: mMesDen1 + vglId: bGeoTri1 vgp_phase: phase2 - asm: '#' - class: Amphibia,amphibians - common_name: fire salamander - family: Salamandridae + class: Chondrichthyes,cartilaginous fishes + common_name: gold dust stingray + family: Potamotrygonidae hub: vgl - order: Caudata - scientific_name: Salamandra salamandra - status: 2-data_progress - taxon_id: '57571' + order: Myliobatiformes + scientific_name: Potamotrygon marinae + status: 4-asm_progress + taxon_id: '000000' techs: 10X: status: 4 @@ -3251,38 +3313,39 @@ toc: status: 1 url: '#' HiC: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Potamotrygon_marinae/sPotMar1/genomic_data/arima/ Ilm: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Potamotrygon_marinae/sPotMar1/genomic_data/illumina/ ONT: status: 4 url: '#' PB: - status: 0 - url: '#' - vglId: aSalSal1 + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Potamotrygon_marinae/sPotMar1/genomic_data/pacbio/ + trio: '' + vglId: sPotMar1 vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_902500255.1 - class: Actinopterygii,Bony fishes - common_name: prehistoric monster fish - family: Batrachoididae - hub: others - order: Batrachoidiformes - scientific_name: Thalassophryne amazonica +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_011004875.1 + class: Aves,birds + common_name: grey crowned-crane + family: Gruidae + hub: vgl + order: Gruiformes + scientific_name: Balearica regulorum status: 8-NCBI - taxon_id: '390379' + taxon_id: '925459' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Thalassophryne_amazonica/fThaAma1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Balearica_regulorum/bBalReg1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Thalassophryne_amazonica/fThaAma1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Balearica_regulorum/bBalReg1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Thalassophryne_amazonica/fThaAma1/genomic_data/dovetail/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Balearica_regulorum/bBalReg1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -3291,60 +3354,60 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Thalassophryne_amazonica/fThaAma1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Balearica_regulorum/bBalReg1/genomic_data/pacbio/ trio: '' - vglId: fThaAma1 + vglId: bBalReg1 vgp_phase: phase1 -- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Erethizon_dorsatum/mEreDor1/assembly_vgp_standard_1.7/ +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_014108255.1 class: Mammalia,mammals - common_name: North American porcupine - family: Erethizontidae + common_name: greater horseshoe bat + family: Rhinolophidae hub: vgl - order: Rodentia - scientific_name: Erethizon dorsatum - status: 6-asm_curation - taxon_id: '34844' + order: Chiroptera + scientific_name: Rhinolophus ferrumequinum + status: 8-NCBI + taxon_id: '59479' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Erethizon_dorsatum/mEreDor1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rhinolophus_ferrumequinum/mRhiFer1/genomic_data/10x/ BN: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rhinolophus_ferrumequinum/mRhiFer1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Erethizon_dorsatum/mEreDor1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rhinolophus_ferrumequinum/mRhiFer1/genomic_data/phase/ Ilm: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Erethizon_dorsatum/mEreDor1/genomic_data/illumina/ + status: 4 + url: '#' ONT: status: 4 url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Erethizon_dorsatum/mEreDor1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rhinolophus_ferrumequinum/mRhiFer1/genomic_data/pacbio/ trio: '' - vglId: mEreDor1 + vglId: mRhiFer1 vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_015220235.1 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_009762305.2 class: Mammalia,mammals - common_name: southern two-toed sloth - family: Megalonychidae + common_name: California sea lion + family: Otariidae hub: vgl - order: Folivora - scientific_name: Choloepus didactylus + order: Carnivora + scientific_name: Zalophus californianus status: 8-NCBI - taxon_id: '27675' + taxon_id: '9704' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Choloepus_didactylus/mChoDid1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Zalophus_californianus/mZalCal1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Choloepus_didactylus/mChoDid1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Zalophus_californianus/mZalCal1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Choloepus_didactylus/mChoDid1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Zalophus_californianus/mZalCal1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -3353,59 +3416,59 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Choloepus_didactylus/mChoDid1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Zalophus_californianus/mZalCal1/genomic_data/pacbio/ trio: '' - vglId: mChoDid1 - vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_009764475.2 - class: Chondrichthyes,cartilaginous fishes - common_name: smalltooth sawfish - family: Pristidae + vglId: mZalCal1 + vgp_phase: phase2 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_015220745.1 + class: Actinopterygii,Bony fishes + common_name: honeycomb rockfish + family: Sebastidae hub: vgl - order: Rhinopristiformes - scientific_name: Pristis pectinata + order: Perciformes + scientific_name: Sebastes umbrosus status: 8-NCBI - taxon_id: '685728' + taxon_id: '72105' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pristis_pectinata/sPriPec2/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sebastes_umbrosus/fSebUmb1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pristis_pectinata/sPriPec2/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sebastes_umbrosus/fSebUmb1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pristis_pectinata/sPriPec2/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sebastes_umbrosus/fSebUmb1/genomic_data/hic/ Ilm: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sebastes_umbrosus/fSebUmb1/genomic_data/illumina/ ONT: status: 4 url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pristis_pectinata/sPriPec2/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sebastes_umbrosus/fSebUmb1/genomic_data/pacbio/ trio: '' - vglId: sPriPec2 - vgp_phase: phase1 + vglId: fSebUmb1 + vgp_phase: phase2 - asm: '#' - class: Aves,birds - common_name: Nelson's sparrow - family: Passerellidae + class: Reptilia,reptiles + common_name: American alligator + family: Alligatoridae hub: vgl - order: Passeriformes - scientific_name: Ammospiza nelsoni + order: Crocodylia + scientific_name: Alligator mississippiensis status: 2-data_progress - taxon_id: '2857394' + taxon_id: '8496' techs: 10X: status: 4 url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Ammospiza_nelsoni/bAmmNel1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Alligator_mississippiensis/rAllMis1/genomic_data/bionano/ HiC: - status: 1 + status: 0 url: '#' Ilm: status: 4 @@ -3414,29 +3477,29 @@ toc: status: 4 url: '#' PB: - status: 2 + status: 0 url: '#' trio: '' - vglId: bAmmNel1 - vgp_phase: phase3 + vglId: rAllMis1 + vgp_phase: phase1 - asm: '#' - class: ',arthropods' - common_name: snow crab - family: Majidae + class: Aves,birds + common_name: House wren + family: Certhiidae hub: vgl - order: Decapoda - scientific_name: Chionoecetes opilio - status: 2-data_progress - taxon_id: '41210' + order: Passeriformes + scientific_name: Troglodytes aedon + status: 0-data_queued + taxon_id: '58211' techs: 10X: status: 4 url: '#' BN: - status: 3 + status: 0 url: '#' HiC: - status: 1 + status: 0 url: '#' Ilm: status: 4 @@ -3445,60 +3508,60 @@ toc: status: 4 url: '#' PB: - status: 2 + status: 0 url: '#' - vglId: qChiOpi2 + vglId: bTroAed1 vgp_phase: phase2 - asm: '#' - class: Actinopterygii,Bony fishes - common_name: shanny - family: Blenniidae - hub: others - order: Blenniiformes - scientific_name: Lipophrys pholis - status: 2-data_progress - taxon_id: '56720' + class: Aves,birds + common_name: lammergeier + family: Accipitridae + hub: vgl + order: Falconiformes + scientific_name: Gypaetus barbatus + status: 4-asm_progress + taxon_id: '33610' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lipophrys_pholis/fLipPho2/genomic_data/10x/ - BN: - status: 0 + status: 4 url: '#' + BN: + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Gypaetus_barbatus/bGypBar2/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lipophrys_pholis/fLipPho2/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Gypaetus_barbatus/bGypBar2/genomic_data/arima/ Ilm: - status: 0 + status: 4 url: '#' ONT: - status: 0 + status: 4 url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lipophrys_pholis/fLipPho2/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Gypaetus_barbatus/bGypBar2/genomic_data/pacbio/ trio: '' - vglId: fLipPho2 + vglId: bGypBar2 vgp_phase: phase3 -- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Diceros_bicornis/mDicBic1/assembly_curated/ - class: Mammalia,mammals - common_name: black rhinoceros - family: Rhinocerotidae +- asm: '#' + class: Actinopterygii,Bony fishes + common_name: longfin smelt + family: Osmeridae hub: vgl - order: Perissodactyla - scientific_name: Diceros bicornis - status: 7-asm_curated - taxon_id: '9805' + order: Osmeriformes + scientific_name: Spirinchus thaleichthys + status: 2-data_progress + taxon_id: '260508' techs: 10X: status: 4 url: '#' BN: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Diceros_bicornis/mDicBic1/genomic_data/bionano/ + status: 0 + url: '#' HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Diceros_bicornis/mDicBic1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Spirinchus_thaleichthys/fSpiTha1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -3506,30 +3569,30 @@ toc: status: 4 url: '#' PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Diceros_bicornis/mDicBic1/genomic_data/pacbio/ - trio: mDicBic2/mDicBic3 - vglId: mDicBic1 - vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_013368585.1 + status: 2 + url: '#' + trio: '' + vglId: fSpiTha1 + vgp_phase: phase3 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_013358815.1 class: Actinopterygii,Bony fishes - common_name: Indo-Pacific tarpon - family: Megalopidae + common_name: electric eel + family: Gymnotidae hub: others - order: Elopiformes - scientific_name: Megalops cyprinoides + order: Gymnotiformes + scientific_name: Electrophorus electricus status: 8-NCBI - taxon_id: '118141' + taxon_id: '8005' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Megalops_cyprinoides/fMegCyp1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Electrophorus_electricus/fEleEle1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Megalops_cyprinoides/fMegCyp1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Electrophorus_electricus/fEleEle1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Megalops_cyprinoides/fMegCyp1/genomic_data/hic/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Electrophorus_electricus/fEleEle1/genomic_data/hic/ Ilm: status: 4 url: '#' @@ -3538,29 +3601,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Megalops_cyprinoides/fMegCyp1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Electrophorus_electricus/fEleEle1/genomic_data/pacbio/ trio: '' - vglId: fMegCyp1 + vglId: fEleEle1 vgp_phase: phase1 -- asm: '#' - class: Aves,birds - common_name: song sparrow - family: Passerellidae +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_900324485.3 + class: Actinopterygii,Bony fishes + common_name: zig-zag eel + family: Mastacembelidae hub: vgl - order: Passeriformes - scientific_name: Melospiza georgiana - status: 2-data_progress - taxon_id: '44398' + order: Synbranchiformes + scientific_name: Mastacembelus armatus + status: 8-NCBI + taxon_id: '205130' techs: 10X: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Mastacembelus_armatus/fMasArm1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Melospiza_georgiana/bMelGeo1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Mastacembelus_armatus/fMasArm1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Melospiza_georgiana/bMelGeo1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Mastacembelus_armatus/fMasArm1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -3569,29 +3632,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Melospiza_georgiana/bMelGeo1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Mastacembelus_armatus/fMasArm1/genomic_data/pacbio/ trio: '' - vglId: bMelGeo1 - vgp_phase: phase4 -- asm: '#' - class: Amphibia,amphibians - common_name: plains spadefoot toad - family: Pelobatidae + vglId: fMasArm1 + vgp_phase: phase1 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_009819605.1 + class: Aves,birds + common_name: Common tern + family: Laridae hub: vgl - order: Anura - scientific_name: Spea bombifrons - status: 2-data_progress - taxon_id: '233779' + order: Charadriiformes + scientific_name: Sterna hirundo + status: 8-NCBI + taxon_id: '108405' techs: 10X: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sterna_hirundo/bSteHir1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Spea_bombifrons/aSpeBom1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sterna_hirundo/bSteHir1/genomic_data/bionano/ HiC: status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sterna_hirundo/bSteHir1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -3599,61 +3662,61 @@ toc: status: 4 url: '#' PB: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sterna_hirundo/bSteHir1/genomic_data/pacbio/ trio: '' - vglId: aSpeBom1 - vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_910596095.1 - class: Actinopterygii,Bony fishes - common_name: southern bluefin tuna - family: Scombridae - hub: others - order: Scombriformes - scientific_name: Thunnus maccoyii - status: 8-NCBI - taxon_id: '8240' + vglId: bSteHir1 + vgp_phase: phase3 +- asm: '#' + class: Reptilia,reptiles + common_name: snub-nosed viper + family: Viperidae + hub: vgl + order: Squamata + scientific_name: Vipera latastei + status: 6-asm_curation + taxon_id: '246179' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Thunnus_maccoyii/fThuMac1/genomic_data/10x/ + status: 4 + url: '#' BN: status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Vipera_latastei/rVipLat1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Thunnus_maccoyii/fThuMac1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Vipera_latastei/rVipLat1/genomic_data/arima/ Ilm: - status: 1 + status: 4 url: '#' ONT: - status: 1 + status: 4 url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Thunnus_maccoyii/fThuMac1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Vipera_latastei/rVipLat1/genomic_data/pacbio/ trio: '' - vglId: fThuMac1 - vgp_phase: phase3 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_009819885.2 + vglId: rVipLat1 + vgp_phase: phase1 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_016699485.2 class: Aves,birds - common_name: Swainson's thrush - family: Turdidae + common_name: chicken + family: Phasianidae hub: vgl - order: Passeriformes - scientific_name: Catharus ustulatus + order: Galliformes + scientific_name: Gallus gallus status: 8-NCBI - taxon_id: '91951' + taxon_id: '9031' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Catharus_ustulatus/bCatUst1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Gallus_gallus/bGalGal1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Catharus_ustulatus/bCatUst1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Gallus_gallus/bGalGal1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Catharus_ustulatus/bCatUst1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Gallus_gallus/bGalGal1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -3662,29 +3725,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Catharus_ustulatus/bCatUst1/genomic_data/pacbio/ - trio: '' - vglId: bCatUst1 - vgp_phase: phase3 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_900324485.3 - class: Actinopterygii,Bony fishes - common_name: zig-zag eel - family: Mastacembelidae + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Gallus_gallus/bGalGal1/genomic_data/pacbio/ + trio: bGalGal2/bGalGal3 + vglId: bGalGal1 + vgp_phase: phase1 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_015220805.1 + class: Aves,birds + common_name: Red-fronted tinkerbird + family: Lybiidae hub: vgl - order: Synbranchiformes - scientific_name: Mastacembelus armatus + order: Piciformes + scientific_name: Pogoniulus pusillus status: 8-NCBI - taxon_id: '205130' + taxon_id: '488313' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Mastacembelus_armatus/fMasArm1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pogoniulus_pusillus/bPogPus1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Mastacembelus_armatus/fMasArm1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pogoniulus_pusillus/bPogPus1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Mastacembelus_armatus/fMasArm1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pogoniulus_pusillus/bPogPus1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -3693,29 +3756,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Mastacembelus_armatus/fMasArm1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pogoniulus_pusillus/bPogPus1/genomic_data/pacbio/ trio: '' - vglId: fMasArm1 - vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_901001135.2 - class: Amphibia,amphibians - common_name: two-lined caecilian - family: Rhinatrematidae - hub: others - order: Apoda - scientific_name: Rhinatrema bivittatum - status: 8-NCBI - taxon_id: '194408' + vglId: bPogPus1 + vgp_phase: phase2 +- asm: '#' + class: Aves,birds + common_name: tufted titmouse + family: Paridae + hub: vgl + order: Passeriformes + scientific_name: Baeolophus bicolor + status: 1-DNA_isolation + taxon_id: '88114' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rhinatrema_bivittatum/aRhiBiv1/genomic_data/10x/ + status: 4 + url: '#' BN: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rhinatrema_bivittatum/aRhiBiv1/genomic_data/bionano/ + status: 0 + url: '#' HiC: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rhinatrema_bivittatum/aRhiBiv1/genomic_data/arima/ + status: 0 + url: '#' Ilm: status: 4 url: '#' @@ -3723,29 +3786,28 @@ toc: status: 4 url: '#' PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rhinatrema_bivittatum/aRhiBiv1/genomic_data/pacbio/ - trio: '' - vglId: aRhiBiv1 - vgp_phase: phase1 + status: 0 + url: '#' + vglId: bBaeBic1 + vgp_phase: phase2 - asm: '#' class: Amphibia,amphibians - common_name: corroboree frog + common_name: Fleay's barred frog family: Myobatrachidae hub: vgl order: Anura - scientific_name: Pseudophryne corroboree - status: 2-data_progress - taxon_id: '495146' + scientific_name: Mixophyes fleayi + status: 0-data_queued + taxon_id: '000000' techs: 10X: status: 4 url: '#' BN: - status: 1 + status: 0 url: '#' HiC: - status: 2 + status: 0 url: '#' Ilm: status: 4 @@ -3754,29 +3816,29 @@ toc: status: 4 url: '#' PB: - status: 2 + status: 0 url: '#' - vglId: aPseCor3 - vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_014839685.1 - class: Actinopteri,Bony fishes - common_name: largescale foureyes - family: Anablepidae - hub: others - order: Cyprinodontiformes - scientific_name: Anableps anableps - status: 8-NCBI - taxon_id: '195821' + vglId: aMixFle1 + vgp_phase: phase3 +- asm: '#' + class: Mammalia,mammals + common_name: slow loris + family: Lorisidae + hub: vgl + order: Primates + scientific_name: Nycticebus coucang + status: 2-data_progress + taxon_id: '9470' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Anableps_anableps/fAnaAna1/genomic_data/10x/ + status: 4 + url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Anableps_anableps/fAnaAna1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Nycticebus_coucang/mNycCou1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Anableps_anableps/fAnaAna1/genomic_data/arima/ + url: '#' Ilm: status: 4 url: '#' @@ -3784,30 +3846,30 @@ toc: status: 4 url: '#' PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Anableps_anableps/fAnaAna1/genomic_data/pacbio/ + status: 2 + url: '#' trio: '' - vglId: fAnaAna1 + vglId: mNycCou1 vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_015852505.1 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_902655055.2 class: Mammalia,mammals - common_name: Australian echidna - family: Tachyglossidae - hub: vgl - order: Monotremata - scientific_name: Tachyglossus aculeatus + common_name: Eurasian river otter + family: Mustelidae + hub: others + order: Carnivora + scientific_name: Lutra lutra status: 8-NCBI - taxon_id: '9261' + taxon_id: '9657' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Tachyglossus_aculeatus/mTacAcu1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lutra_lutra/mLutLut1/genomic_data/10x/ BN: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Tachyglossus_aculeatus/mTacAcu1/genomic_data/bionano/ + status: 4 + url: '#' HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Tachyglossus_aculeatus/mTacAcu1/genomic_data/phase/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lutra_lutra/mLutLut1/genomic_data/baylor-hic/ Ilm: status: 4 url: '#' @@ -3816,29 +3878,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Tachyglossus_aculeatus/mTacAcu1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lutra_lutra/mLutLut1/genomic_data/pacbio/ trio: '' - vglId: mTacAcu1 - vgp_phase: phase2 -- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Heterohyrax_brucei/mHetBru1/assembly_vgp_standard_2.1/ - class: Mammalia,mammals - common_name: yellow-spotted hyrax - family: Procaviidae + vglId: mLutLut1 + vgp_phase: phase1 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_900964775.1 + class: Actinopterygii,Bony fishes + common_name: Asian bonytongue + family: Osteoglossidae hub: others - order: Hyracoidea - scientific_name: Heterohyrax brucei - status: 5-asm_done - taxon_id: '77598' + order: Osteoglossiformes + scientific_name: Scleropages formosus + status: 8-NCBI + taxon_id: '113540' techs: 10X: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Scleropages_formosus/fSclFor1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Heterohyrax_brucei/mHetBru1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Scleropages_formosus/fSclFor1/genomic_data/bionano/ HiC: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Scleropages_formosus/fSclFor1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -3847,29 +3909,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Heterohyrax_brucei/mHetBru1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Scleropages_formosus/fSclFor1/genomic_data/pacbio/ trio: '' - vglId: mHetBru1 + vglId: fSclFor1 vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_900700375.2 - class: Actinopterygii,Bony fishes - common_name: denticle herring - family: Denticipitidae - hub: vgl - order: Clupeiformes - scientific_name: Denticeps clupeoides +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_014108245.1 + class: Mammalia,mammals + common_name: Kuhl's pipistrelle + family: Vespertilionidae + hub: others + order: Chiroptera + scientific_name: Pipistrellus kuhlii status: 8-NCBI - taxon_id: '299321' + taxon_id: '59472' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Denticeps_clupeoides/fDenClu1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pipistrellus_kuhlii/mPipKuh1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Denticeps_clupeoides/fDenClu1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pipistrellus_kuhlii/mPipKuh1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Denticeps_clupeoides/fDenClu1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pipistrellus_kuhlii/mPipKuh1/genomic_data/phase/ Ilm: status: 4 url: '#' @@ -3878,59 +3940,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Denticeps_clupeoides/fDenClu1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pipistrellus_kuhlii/mPipKuh1/genomic_data/pacbio/ trio: '' - vglId: fDenClu1 - vgp_phase: phase1 -- asm: '#' - class: Enteropneusta,jawless,Agnatha - common_name: acorn worm - family: Harrimaniidae - hub: vgl - order: Enteropneusta - scientific_name: Saccoglossus kowalevskii - status: 2-data_progress - taxon_id: '10224' - techs: - 10X: - status: 4 - url: '#' - BN: - status: 2 - url: '#' - HiC: - status: 0 - url: '#' - Ilm: - status: 4 - url: '#' - ONT: - status: 4 - url: '#' - PB: - status: 0 - url: '#' - vglId: kSacKow2 + vglId: mPipKuh1 vgp_phase: phase2 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_019393635.1 - class: Mammalia,mammals - common_name: monito del monte - family: Microbiotheriidae +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_902713425.1 + class: Actinopterygii,Bony fishes + common_name: sterlet + family: Acipenseridae hub: others - order: Microbiotheria - scientific_name: Dromiciops gliroides + order: Acipenseriformes + scientific_name: Acipenser ruthenus status: 8-NCBI - taxon_id: '33562' + taxon_id: '7906' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dromiciops_gliroides/mDroGli1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Acipenser_ruthenus/fAciRut3/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dromiciops_gliroides/mDroGli1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Acipenser_ruthenus/fAciRut3/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dromiciops_gliroides/mDroGli1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Acipenser_ruthenus/fAciRut3/genomic_data/dovetail/ Ilm: status: 4 url: '#' @@ -3939,26 +3971,26 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dromiciops_gliroides/mDroGli1/genomic_data/pacbio/ - trio: '' - vglId: mDroGli1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Acipenser_ruthenus/fAciRut3/genomic_data/pacbio/ + trio: fAciRut1/fAciRut2 + vglId: fAciRut3 vgp_phase: phase1 - asm: '#' - class: Reptilia,reptiles - common_name: tarantolino - family: Sphaerodactylidae + class: Mammalia,mammals + common_name: Asiatic elephant + family: Elephantidae hub: vgl - order: Squamata - scientific_name: Euleptes europaea + order: Proboscidea + scientific_name: Elephas maximus status: 2-data_progress - taxon_id: '460621' + taxon_id: '9783' techs: 10X: status: 4 url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Euleptes_europaea/rEulEur1/genomic_data/bionano/ + url: '#' HiC: status: 2 url: '#' @@ -3969,29 +4001,28 @@ toc: status: 4 url: '#' PB: - status: 0 + status: 2 url: '#' - trio: '' - vglId: rEulEur1 + vglId: mEleMax1 vgp_phase: phase1 - asm: '#' class: Aves,birds - common_name: Common starling - family: Sturnidae + common_name: chicken + family: Phasianidae hub: vgl - order: Passeriformes - scientific_name: Sturnus vulgaris - status: 1-DNA_isolation - taxon_id: '9172' + order: Galliformes + scientific_name: Gallus gallus + status: 7-asm_curated + taxon_id: '9031' techs: 10X: status: 4 url: '#' BN: - status: 0 + status: 1 url: '#' HiC: - status: 0 + status: 1 url: '#' Ilm: status: 4 @@ -4000,29 +4031,29 @@ toc: status: 4 url: '#' PB: - status: 0 + status: 1 url: '#' - vglId: bStuVul1 - vgp_phase: phase2 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_017639675.1 - class: Actinopterygii,Bony fishes - common_name: '' - family: Galaxiidae - hub: others - order: Galaxiiformes - scientific_name: Aplochiton taeniatus - status: 8-NCBI - taxon_id: '946358' + vglId: bGalGal4 + vgp_phase: other +- asm: '#' + class: Mammalia,mammals + common_name: nine-banded armadillo + family: Dasypodidae + hub: vgl + order: Cingulata + scientific_name: Dasypus novemcinctus + status: 2-data_progress + taxon_id: '9361' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Aplochiton_taeniatus/fAplTae1/genomic_data/10x/ + status: 4 + url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Aplochiton_taeniatus/fAplTae1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dasypus_novemcinctus/mDasNov1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Aplochiton_taeniatus/fAplTae1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dasypus_novemcinctus/mDasNov1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -4030,30 +4061,30 @@ toc: status: 4 url: '#' PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Aplochiton_taeniatus/fAplTae1/genomic_data/pacbio/ + status: 2 + url: '#' trio: '' - vglId: fAplTae1 + vglId: mDasNov1 vgp_phase: phase1 -- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Spatula_cyanoptera/bSpaCya1/assembly_vgp_standard_1.5/ +- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Porphyrio_hochstetteri/bPorHoc1/assembly_curated/ class: Aves,birds - common_name: cinnamon teal - family: Anatidae + common_name: South Island takahe + family: Rallidae hub: vgl - order: Anseriformes - scientific_name: Spatula cyanoptera - status: 5-asm_done - taxon_id: '75840' + order: Gruiformes + scientific_name: Porphyrio hochstetteri + status: 7-asm_curated + taxon_id: '439704' techs: 10X: status: 4 url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Spatula_cyanoptera/bSpaCya1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Porphyrio_hochstetteri/bPorHoc1/genomic_data/bionano/ HiC: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Porphyrio_hochstetteri/bPorHoc1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -4062,28 +4093,28 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Spatula_cyanoptera/bSpaCya1/genomic_data/pacbio/ - trio: '' - vglId: bSpaCya1 - vgp_phase: phase3 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Porphyrio_hochstetteri/bPorHoc1/genomic_data/pacbio/ + trio: bPorHoc2/bPorHoc3 + vglId: bPorHoc1 + vgp_phase: phase2 - asm: '#' class: Aves,birds - common_name: speckled mousebird - family: Coliidae + common_name: Humboldt's penguin + family: Spheniscidae hub: vgl - order: Coliiformes - scientific_name: Colius striatus + order: Sphenisciformes + scientific_name: Spheniscus humboldti status: 2-data_progress - taxon_id: '57412' + taxon_id: '9240' techs: 10X: status: 4 url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Colius_striatus/bColStr4/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Spheniscus_humboldti/bSphHub1/genomic_data/bionano/ HiC: - status: 2 + status: 0 url: '#' Ilm: status: 4 @@ -4095,58 +4126,27 @@ toc: status: 0 url: '#' trio: '' - vglId: bColStr4 + vglId: bSphHub1 vgp_phase: phase1 -- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pan_troglodytes/mPanTro1/assembly_vgp_standard_1.6/ - class: Mammalia,mammals - common_name: chimpanzee - family: Hominidae - hub: others - order: Primates - scientific_name: Pan troglodytes - status: 5-asm_done - taxon_id: '9598' - techs: - 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pan_troglodytes/mPanTro1/genomic_data/10x/ - BN: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pan_troglodytes/mPanTro1/genomic_data/bionano/ - HiC: - status: 4 - url: '#' - Ilm: - status: 4 - url: '#' - ONT: - status: 4 - url: '#' - PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pan_troglodytes/mPanTro1/genomic_data/pacbio/ - trio: '' - vglId: mPanTro1 - vgp_phase: phase3 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_014108415.1 - class: Mammalia,mammals - common_name: Pallas's mastiff bat - family: Molossidae +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_902362185.1 + class: Actinopterygii,Bony fishes + common_name: milkfish + family: Chanidae hub: others - order: Chiroptera - scientific_name: Molossus molossus + order: Gonorynchiformes + scientific_name: Chanos chanos status: 8-NCBI - taxon_id: '27622' + taxon_id: '29144' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Molossus_molossus/mMolMol1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Chanos_chanos/fChaCha1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Molossus_molossus/mMolMol1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Chanos_chanos/fChaCha1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Molossus_molossus/mMolMol1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Chanos_chanos/fChaCha1/genomic_data/dovetail/ Ilm: status: 4 url: '#' @@ -4155,28 +4155,28 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Molossus_molossus/mMolMol1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Chanos_chanos/fChaCha1/genomic_data/pacbio/ trio: '' - vglId: mMolMol1 - vgp_phase: phase2 -- asm: '#' - class: Amphibia,amphibians - common_name: eastern narrow-mouthed toad - family: Microhylidae + vglId: fChaCha1 + vgp_phase: phase1 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_011100535.2 + class: Mammalia,mammals + common_name: white-tufted-ear marmoset + family: Cebidae hub: vgl - order: Anura - scientific_name: Gastrophryne carolinensis - status: 2-data_progress - taxon_id: '8429' + order: Primates + scientific_name: Callithrix jacchus + status: 8-NCBI + taxon_id: '9483' techs: 10X: - status: 4 + status: 1 url: '#' BN: - status: 3 + status: 1 url: '#' HiC: - status: 2 + status: 1 url: '#' Ilm: status: 4 @@ -4185,29 +4185,30 @@ toc: status: 4 url: '#' PB: - status: 2 + status: 1 url: '#' - vglId: aGasCar1 + trio: mCalJac2/mCalJac3 + vglId: mCalJac1 vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_009769605.1 +- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Trogon_surrucura/bTroSur1/assembly_curated/ class: Aves,birds - common_name: Abyssinian ground-hornbill - family: Bucorvidae + common_name: Suruca trogon + family: Trogonidae hub: vgl - order: Bucerotiformes - scientific_name: Bucorvus abyssinicus - status: 8-NCBI - taxon_id: '153643' + order: Trogoniformes + scientific_name: Trogon surrucura + status: 7-asm_curated + taxon_id: '297711' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Bucorvus_abyssinicus/bBucAby1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Trogon_surrucura/bTroSur1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Bucorvus_abyssinicus/bBucAby1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Trogon_surrucura/bTroSur1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Bucorvus_abyssinicus/bBucAby1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Trogon_surrucura/bTroSur1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -4216,29 +4217,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Bucorvus_abyssinicus/bBucAby1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Trogon_surrucura/bTroSur1/genomic_data/pacbio/ trio: '' - vglId: bBucAby1 + vglId: bTroSur1 vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_016699485.2 - class: Aves,birds - common_name: chicken - family: Phasianidae +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_011762595.1 + class: Mammalia,mammals + common_name: common bottlenose dolphin + family: Delphinidae hub: vgl - order: Galliformes - scientific_name: Gallus gallus + order: Artiodactyla + scientific_name: Tursiops truncatus status: 8-NCBI - taxon_id: '9031' + taxon_id: '9739' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Gallus_gallus/bGalGal1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Tursiops_truncatus/mTurTru1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Gallus_gallus/bGalGal1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Tursiops_truncatus/mTurTru1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Gallus_gallus/bGalGal1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Tursiops_truncatus/mTurTru1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -4247,10 +4248,10 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Gallus_gallus/bGalGal1/genomic_data/pacbio/ - trio: bGalGal2/bGalGal3 - vglId: bGalGal1 - vgp_phase: phase1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Tursiops_truncatus/mTurTru1/genomic_data/pacbio/ + trio: mTurTru2/mTurTru3 + vglId: mTurTru1 + vgp_phase: phase2 - asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_010993605.1 class: Hyperoartia,jawless,Agnatha common_name: sea lamprey @@ -4284,23 +4285,23 @@ toc: vgp_phase: phase1 - asm: '#' class: Aves,birds - common_name: saltmarsh sparrow - family: Passerellidae + common_name: common myna + family: Sturnidae hub: vgl order: Passeriformes - scientific_name: Ammodramus caudacutus - status: 2-data_progress - taxon_id: '69262' + scientific_name: Acridotheres tristis + status: 4-asm_progress + taxon_id: '279927' techs: 10X: status: 4 url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Ammodramus_caudacutus/bAmmCau1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Acridotheres_tristis/bAcrTri1/genomic_data/bionano/ HiC: status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Acridotheres_tristis/bAcrTri1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -4308,30 +4309,61 @@ toc: status: 4 url: '#' PB: + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Acridotheres_tristis/bAcrTri1/genomic_data/pacbio/ + trio: '' + vglId: bAcrTri1 + vgp_phase: phase3 +- asm: '#' + class: Reptilia,reptiles + common_name: tarantolino + family: Sphaerodactylidae + hub: vgl + order: Squamata + scientific_name: Euleptes europaea + status: 2-data_progress + taxon_id: '460621' + techs: + 10X: + status: 4 + url: '#' + BN: + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Euleptes_europaea/rEulEur1/genomic_data/bionano/ + HiC: status: 2 url: '#' + Ilm: + status: 4 + url: '#' + ONT: + status: 4 + url: '#' + PB: + status: 0 + url: '#' trio: '' - vglId: bAmmCau1 - vgp_phase: phase4 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_017976325.1 - class: Actinopterygii,Bony fishes - common_name: copperband butterflyfish - family: Chaetodontidae - hub: others - order: Chaetodontiformes - scientific_name: Chelmon rostratus - status: 8-NCBI - taxon_id: '109905' + vglId: rEulEur1 + vgp_phase: phase1 +- asm: '#' + class: Actinopteri,Bony fishes + common_name: banded killifish + family: Fundulidae + hub: vgl + order: Cyprinodontiformes + scientific_name: Fundulus diaphanus + status: 2-data_progress + taxon_id: '54267' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Chelmon_rostratus/fCheRos1/genomic_data/10x/ + status: 4 + url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Chelmon_rostratus/fCheRos1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Fundulus_diaphanus/fFunDia1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Chelmon_rostratus/fCheRos1/genomic_data/hic/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Fundulus_diaphanus/fFunDia1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -4339,30 +4371,30 @@ toc: status: 4 url: '#' PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Chelmon_rostratus/fCheRos1/genomic_data/pacbio/ + status: 0 + url: '#' trio: '' - vglId: fCheRos1 - vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_009819655.1 - class: Aves,birds - common_name: blackcap - family: Sylviidae - hub: vgl - order: Passeriformes - scientific_name: Sylvia atricapilla + vglId: fFunDia1 + vgp_phase: phase2 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_902459505.2 + class: Amphibia,amphibians + common_name: Gabon caecilian + family: Dermophiidae + hub: others + order: Gymnophiona + scientific_name: Geotrypetes seraphini status: 8-NCBI - taxon_id: '48155' + taxon_id: '260995' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sylvia_atricapilla/bSylAtr1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Geotrypetes_seraphini/aGeoSer1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sylvia_atricapilla/bSylAtr1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Geotrypetes_seraphini/aGeoSer1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sylvia_atricapilla/bSylAtr1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Geotrypetes_seraphini/aGeoSer1/genomic_data/dovetail/ Ilm: status: 4 url: '#' @@ -4371,28 +4403,28 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sylvia_atricapilla/bSylAtr1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Geotrypetes_seraphini/aGeoSer1/genomic_data/pacbio/ trio: '' - vglId: bSylAtr1 - vgp_phase: phase4 + vglId: aGeoSer1 + vgp_phase: phase1 - asm: '#' class: Aves,birds - common_name: American goldfinch - family: Fringillidae + common_name: Nelson's sparrow + family: Passerellidae hub: vgl order: Passeriformes - scientific_name: Spinus tristis - status: 1-DNA_isolation - taxon_id: '54773' + scientific_name: Ammospiza nelsoni + status: 2-data_progress + taxon_id: '2857394' techs: 10X: status: 4 url: '#' BN: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Ammospiza_nelsoni/bAmmNel1/genomic_data/bionano/ HiC: - status: 0 + status: 1 url: '#' Ilm: status: 4 @@ -4401,29 +4433,30 @@ toc: status: 4 url: '#' PB: - status: 0 + status: 2 url: '#' - vglId: bSpiTri1 + trio: '' + vglId: bAmmNel1 vgp_phase: phase3 -- asm: '#' +- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lagopus_muta/bLagMut1/assembly_vgp_standard_2.0/ class: Aves,birds - common_name: red-winged blackbird - family: Icteridae - hub: vgl - order: Passeriformes - scientific_name: Agelaius phoeniceus - status: 1-DNA_isolation - taxon_id: '39638' + common_name: rock ptarmigan + family: Phasianidae + hub: others + order: Galliformes + scientific_name: Lagopus muta + status: 5-asm_done + taxon_id: '64668' techs: 10X: status: 4 url: '#' BN: - status: 0 + status: 4 url: '#' HiC: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lagopus_muta/bLagMut1/genomic_data/dovetail/ Ilm: status: 4 url: '#' @@ -4431,29 +4464,31 @@ toc: status: 4 url: '#' PB: - status: 0 - url: '#' - vglId: bAgePho1 - vgp_phase: phase2 -- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Danio_rerio/fDreSAT1/assembly_curated/ - class: Actinopterygii,Bony fishes - common_name: zebrafish - family: Danionidae + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lagopus_muta/bLagMut1/genomic_data/pacbio/ + trio: '' + vglId: bLagMut1 + vgp_phase: phase3 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_903992545.1 + class: Mammalia,mammals + common_name: common pipistrelle + family: Vespertilionidae hub: others - order: Cypriniformes - scientific_name: Danio rerio - status: 7-asm_curated - taxon_id: '7955' + order: Chiroptera + scientific_name: Pipistrellus pipistrellus + status: 8-NCBI + taxon_id: '59474' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Danio_rerio/fDreSAT1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pipistrellus_pipistrellus/mPipPip1/genomic_data/10x/ BN: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Danio_rerio/fDreSAT1/genomic_data/bionano/ - HiC: status: 4 url: '#' + HiC: + link: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pipistrellus_pipistrellus/mPipPip2/genomic_data/arima/ + status: 1 + url: '#' Ilm: status: 4 url: '#' @@ -4462,29 +4497,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Danio_rerio/fDreSAT1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pipistrellus_pipistrellus/mPipPip1/genomic_data/pacbio/ trio: '' - vglId: fDreSAT1 - vgp_phase: phase1 -- asm: '#' - class: Chondrichthyes,cartilaginous fishes - common_name: zebra shark - family: Stegostomatidae - hub: vgl - order: Orectolobiformes - scientific_name: Stegostoma tigrinum - status: 0-data_queued - taxon_id: '000000' + vglId: mPipPip1 + vgp_phase: phase4 +- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Tamandua_tetradactyla/mTamTet1/assembly_vgp_standard_1.7/ + class: Mammalia,mammals + common_name: southern tamandua + family: Myrmecophagidae + hub: others + order: Pilosa + scientific_name: Tamandua tetradactyla + status: 5-asm_done + taxon_id: '48850' techs: 10X: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Tamandua_tetradactyla/mTamTet1/genomic_data/10x/ BN: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Tamandua_tetradactyla/mTamTet1/genomic_data/bionano/ HiC: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Tamandua_tetradactyla/mTamTet1/genomic_data/hic/ Ilm: status: 4 url: '#' @@ -4492,29 +4527,30 @@ toc: status: 4 url: '#' PB: - status: 0 - url: '#' - vglId: sSteTig2 - vgp_phase: phase2 + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Tamandua_tetradactyla/mTamTet1/genomic_data/pacbio/ + trio: '' + vglId: mTamTet1 + vgp_phase: phase1 - asm: '#' - class: Reptilia,reptiles - common_name: European pond turtle - family: Emydidae + class: Mammalia,mammals + common_name: Botta's pocket gopher + family: Geomyidae hub: vgl - order: Testudines - scientific_name: Emys orbicularis - status: 3-data_done - taxon_id: '82168' + order: Rodentia + scientific_name: Thomomys bottae + status: 2-data_progress + taxon_id: '10013' techs: 10X: status: 4 url: '#' BN: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Emys_orbicularis/rEmyOrb1/genomic_data/bionano/ + status: 3 + url: '#' HiC: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Emys_orbicularis/rEmyOrb1/genomic_data/arima/ + status: 0 + url: '#' Ilm: status: 4 url: '#' @@ -4522,30 +4558,29 @@ toc: status: 4 url: '#' PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Emys_orbicularis/rEmyOrb1/genomic_data/pacbio/ - trio: '' - vglId: rEmyOrb1 - vgp_phase: phase3 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_902148855.1 + status: 0 + url: '#' + vglId: mThoBot1 + vgp_phase: phase1 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_900324465.3 class: Actinopterygii,Bony fishes - common_name: orbiculate cardinalfish - family: Apogonidae - hub: others - order: Kurtiformes - scientific_name: Sphaeramia orbicularis + common_name: climbing perch + family: Anabantidae + hub: vgl + order: Anabantiformes + scientific_name: Anabas testudineus status: 8-NCBI - taxon_id: '375764' + taxon_id: '64144' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sphaeramia_orbicularis/fSphaOr1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Anabas_testudineus/fAnaTes1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sphaeramia_orbicularis/fSphaOr1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Anabas_testudineus/fAnaTes1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sphaeramia_orbicularis/fSphaOr1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Anabas_testudineus/fAnaTes1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -4554,29 +4589,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sphaeramia_orbicularis/fSphaOr1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Anabas_testudineus/fAnaTes1/genomic_data/pacbio/ trio: '' - vglId: fSphaOr1 + vglId: fAnaTes1 vgp_phase: phase1 - asm: '#' class: Aves,birds - common_name: black-legged kittiwake - family: Laridae + common_name: Black-capped chickadee + family: Paridae hub: vgl - order: Charadriiformes - scientific_name: Rissa tridactyla - status: 2-data_progress - taxon_id: '75485' + order: Passeriformes + scientific_name: Poecile atricapillus + status: 1-DNA_isolation + taxon_id: '48891' techs: 10X: status: 4 url: '#' BN: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rissa_tridactyla/bRisTri1/genomic_data/bionano/ + status: 0 + url: '#' HiC: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rissa_tridactyla/bRisTri1/genomic_data/arima/ + status: 0 + url: '#' Ilm: status: 4 url: '#' @@ -4584,30 +4619,29 @@ toc: status: 4 url: '#' PB: - status: 2 + status: 0 url: '#' - trio: '' - vglId: bRisTri1 - vgp_phase: phase2 -- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Trogon_surrucura/bTroSur1/assembly_curated/ - class: Aves,birds - common_name: Suruca trogon - family: Trogonidae + vglId: bPoeAtr1 + vgp_phase: phase3 +- asm: '#' + class: Actinopterygii,Bony fishes + common_name: pejerrey + family: Atherinopsidae hub: vgl - order: Trogoniformes - scientific_name: Trogon surrucura - status: 7-asm_curated - taxon_id: '297711' + order: Atheriniformes + scientific_name: Odontesthes bonariensis + status: 0-data_queued + taxon_id: '219752' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Trogon_surrucura/bTroSur1/genomic_data/10x/ + status: 4 + url: '#' BN: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Trogon_surrucura/bTroSur1/genomic_data/bionano/ + status: 0 + url: '#' HiC: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Trogon_surrucura/bTroSur1/genomic_data/arima/ + status: 0 + url: '#' Ilm: status: 4 url: '#' @@ -4615,61 +4649,59 @@ toc: status: 4 url: '#' PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Trogon_surrucura/bTroSur1/genomic_data/pacbio/ - trio: '' - vglId: bTroSur1 - vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_009764565.3 - class: Reptilia,reptiles - common_name: leatherback sea turtle - family: Dermochelyidae + status: 0 + url: '#' + vglId: fOdoBon1 + vgp_phase: phase2 +- asm: '#' + class: Aves,birds + common_name: blue jay + family: Corvidae hub: vgl - order: Testudines - scientific_name: Dermochelys coriacea - status: 8-NCBI - taxon_id: '27794' + order: Passeriformes + scientific_name: Cyanocitta cristata + status: 1-DNA_isolation + taxon_id: '28727' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dermochelys_coriacea/rDerCor1/genomic_data/10x/ - BN: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dermochelys_coriacea/rDerCor1/genomic_data/bionano/ - HiC: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dermochelys_coriacea/rDerCor1/genomic_data/arima/ - Ilm: + status: 4 + url: '#' + BN: + status: 0 + url: '#' + HiC: + status: 0 + url: '#' + Ilm: status: 4 url: '#' ONT: status: 4 url: '#' PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dermochelys_coriacea/rDerCor1/genomic_data/pacbio/ - trio: '' - vglId: rDerCor1 - vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_900634625.2 - class: Actinopterygii,Bony fishes - common_name: Indian glassy fish - family: Ambassidae - hub: vgl - order: Ovalentaria - scientific_name: Parambassis ranga + status: 0 + url: '#' + vglId: bCyaCri2 + vgp_phase: phase3 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_004027225.2 + class: Aves,birds + common_name: Kakapo + family: Psittacidae + hub: others + order: Psittaciformes + scientific_name: Strigops habroptilus status: 8-NCBI - taxon_id: '210632' + taxon_id: '57251' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Parambassis_ranga/fParRan2/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Strigops_habroptilus/bStrHab1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Parambassis_ranga/fParRan2/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Strigops_habroptilus/bStrHab1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Parambassis_ranga/fParRan2/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Strigops_habroptilus/bStrHab1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -4678,25 +4710,25 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Parambassis_ranga/fParRan2/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Strigops_habroptilus/bStrHab1/genomic_data/pacbio/ trio: '' - vglId: fParRan2 + vglId: bStrHab1 vgp_phase: phase1 - asm: '#' - class: Actinopterygii,Bony fishes - common_name: red shiner - family: Leuciscidae + class: Aves,birds + common_name: Swift parrot + family: Psittacidae hub: vgl - order: Cypriniformes - scientific_name: Cyprinella lutrensis - status: 0-data_queued - taxon_id: '28791' + order: Psittaciformes + scientific_name: Lathamus discolor + status: 2-data_progress + taxon_id: '678569' techs: 10X: status: 4 url: '#' BN: - status: 0 + status: 2 url: '#' HiC: status: 0 @@ -4710,88 +4742,58 @@ toc: PB: status: 0 url: '#' - vglId: fCypLut1 - vgp_phase: phase2 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_902459465.1 - class: Asteroidea,echinoderms - common_name: European starfish - family: Asteriidae - hub: others - order: Forcipulatida - scientific_name: Asterias rubens + vglId: bLatDis1 + vgp_phase: phase3 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_009769465.1 + class: Aves,birds + common_name: red-crested turaco + family: Musophagidae + hub: vgl + order: Musophagiformes + scientific_name: Tauraco erythrolophus status: 8-NCBI - taxon_id: '7604' + taxon_id: '121530' techs: 10X: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Tauraco_erythrolophus/bTauEry1/genomic_data/10x/ BN: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Tauraco_erythrolophus/bTauEry1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Asterias_rubens/eAstRub1/genomic_data/dovetail/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Tauraco_erythrolophus/bTauEry1/genomic_data/arima/ Ilm: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Asterias_rubens/eAstRub1/genomic_data/illumina/ + status: 4 + url: '#' ONT: status: 4 url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Asterias_rubens/eAstRub1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Tauraco_erythrolophus/bTauEry1/genomic_data/pacbio/ trio: '' - vglId: eAstRub1 + vglId: bTauEry1 vgp_phase: phase1 - asm: '#' - class: Mammalia,mammals - common_name: pig-tailed macaque - family: Cercopithecidae - hub: vgl - order: Primates - scientific_name: Macaca nemestrina - status: 0-data_queued - taxon_id: '9545' - techs: - 10X: - status: 4 - url: '#' - BN: - status: 0 - url: '#' - HiC: - status: 0 - url: '#' - Ilm: - status: 4 - url: '#' - ONT: - status: 4 - url: '#' - PB: - status: 0 - url: '#' - vglId: mMacNem1 - vgp_phase: phase2 -- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Haemorhous_mexicanus/bHaeMex1/assembly_vgp_standard_2.0/ - class: Aves,birds - common_name: house finch - family: Fringillidae + class: Actinopterygii,Bony fishes + common_name: delta smelt + family: Osmeridae hub: vgl - order: Passeriformes - scientific_name: Haemorhous mexicanus - status: 5-asm_done - taxon_id: '30427' + order: Osmeriformes + scientific_name: Hypomesus transpacificus + status: 4-asm_progress + taxon_id: '137520' techs: 10X: status: 4 url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Haemorhous_mexicanus/bHaeMex1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Hypomesus_transpacificus/fHypTra1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Haemorhous_mexicanus/bHaeMex1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Hypomesus_transpacificus/fHypTra1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -4800,55 +4802,56 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Haemorhous_mexicanus/bHaeMex1/genomic_data/pacbio/ + url: '#' trio: '' - vglId: bHaeMex1 + vglId: fHypTra1 vgp_phase: phase3 -- asm: '#' +- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dendropsophus_ebraccatus/aDenEbr1/assembly_nhgri_trio_1.6/ class: Amphibia,amphibians - common_name: Sardinian tree frog + common_name: hourglass treefrog family: Hylidae hub: vgl order: Anura - scientific_name: Hyla sarda - status: 2-data_progress - taxon_id: '327740' + scientific_name: Dendropsophus ebraccatus + status: 6-asm_curation + taxon_id: '150705' techs: 10X: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dendropsophus_ebraccatus/aDenEbr1/genomic_data/10x/ BN: status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dendropsophus_ebraccatus/aDenEbr1/genomic_data/bionano/ HiC: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dendropsophus_ebraccatus/aDenEbr1/genomic_data/arima/ Ilm: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dendropsophus_ebraccatus/aDenEbr1/genomic_data/illumina/ ONT: status: 4 url: '#' PB: - status: 2 - url: '#' - vglId: aHylSar1 - vgp_phase: phase3 + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dendropsophus_ebraccatus/aDenEbr1/genomic_data/pacbio/ + trio: aDenEbr4/aDenEbr5 + vglId: aDenEbr1 + vgp_phase: phase1 - asm: '#' - class: Mammalia,mammals - common_name: alpaca - family: Camelidae + class: Reptilia,reptiles + common_name: Gharial + family: Gavialidae hub: vgl - order: Artiodactyla - scientific_name: Vicugna pacos - status: 0-data_queued - taxon_id: '30538' + order: Crocodylia + scientific_name: Gavialis gangeticus + status: 2-data_progress + taxon_id: '94835' techs: 10X: status: 4 url: '#' BN: - status: 0 + status: 2 url: '#' HiC: status: 0 @@ -4862,27 +4865,27 @@ toc: PB: status: 0 url: '#' - vglId: mVicPac1 - vgp_phase: phase2 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_015227805.1 - class: Aves,birds - common_name: Barn swallow - family: Hirundinidae - hub: vgl - order: Passeriformes - scientific_name: Hirundo rustica + vglId: rGavGan2 + vgp_phase: phase1 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_903992535.2 + class: Mammalia,mammals + common_name: Eurasian water vole + family: Cricetidae + hub: others + order: Rodentia + scientific_name: Arvicola amphibius status: 8-NCBI - taxon_id: '43150' + taxon_id: '1047088' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Hirundo_rustica/bHirRus1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Arvicola_amphibius/mArvAmp1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Hirundo_rustica/bHirRus1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Arvicola_amphibius/mArvAmp1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Hirundo_rustica/bHirRus1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Arvicola_amphibius/mArvAmp1/genomic_data/dovetail/ Ilm: status: 4 url: '#' @@ -4891,28 +4894,28 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Hirundo_rustica/bHirRus1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Arvicola_amphibius/mArvAmp1/genomic_data/pacbio/ trio: '' - vglId: bHirRus1 - vgp_phase: phase2 -- asm: '#' - class: Chondrichthyes,cartilaginous fishes - common_name: Atlantic stingray - family: Dasyatidae - hub: vgl - order: Myliobatiformes - scientific_name: Hypanus sabinus - status: 1-DNA_isolation - taxon_id: '79690' + vglId: mArvAmp1 + vgp_phase: phase1 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_902167405.1 + class: Actinopterygii,Bony fishes + common_name: Atlantic cod + family: Gadidae + hub: others + order: Gadiformes + scientific_name: Gadus morhua + status: 8-NCBI + taxon_id: '8049' techs: 10X: - status: 4 + status: 1 url: '#' BN: - status: 0 + status: 1 url: '#' HiC: - status: 0 + status: 1 url: '#' Ilm: status: 4 @@ -4921,60 +4924,30 @@ toc: status: 4 url: '#' PB: - status: 0 - url: '#' - vglId: sHypSab1 - vgp_phase: phase2 -- asm: '#' - class: Actinopterygii,Bony fishes - common_name: chub mackerel - family: Scombridae - hub: vgl - order: Scombriformes - scientific_name: Scomber japonicus - status: 3-data_done - taxon_id: '13676' - techs: - 10X: - status: 4 - url: '#' - BN: - status: 0 - url: '#' - HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Scomber_japonicus/fScoJap1/genomic_data/arima/ - Ilm: - status: 4 - url: '#' - ONT: - status: 4 url: '#' - PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Scomber_japonicus/fScoJap1/genomic_data/pacbio/ trio: '' - vglId: fScoJap1 + vglId: fGadMor1 vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_907165065.1 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_900496995.4 class: Aves,birds - common_name: Eurasian nightjar - family: Caprimulgidae + common_name: golden eagle + family: Accipitridae hub: others - order: Caprimulgiformes - scientific_name: Caprimulgus europaeus + order: Falconiformes + scientific_name: Aquila chrysaetos status: 8-NCBI - taxon_id: '111811' + taxon_id: '8962' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Caprimulgus_europaeus/bCapEur3/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Aquila_chrysaetos/bAquChr1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Caprimulgus_europaeus/bCapEur3/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Aquila_chrysaetos/bAquChr1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Caprimulgus_europaeus/bCapEur3/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Aquila_chrysaetos/bAquChr1/genomic_data/dovetail/ Ilm: status: 4 url: '#' @@ -4983,29 +4956,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Caprimulgus_europaeus/bCapEur3/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Aquila_chrysaetos/bAquChr1/genomic_data/pacbio/ trio: '' - vglId: bCapEur3 + vglId: bAquChr1 vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_014108235.1 - class: Mammalia,mammals - common_name: '' - family: Vespertilionidae +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_901765095.2 + class: Amphibia,amphibians + common_name: tiny Cayenne caecilian + family: Siphonopidae hub: others - order: Chiroptera - scientific_name: Myotis myotis + order: Gymnophiona + scientific_name: Microcaecilia unicolor status: 8-NCBI - taxon_id: '51298' + taxon_id: '1415580' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Myotis_myotis/mMyoMyo1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Microcaecilia_unicolor/aMicUni1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Myotis_myotis/mMyoMyo1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Microcaecilia_unicolor/aMicUni1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Myotis_myotis/mMyoMyo1/genomic_data/phase/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Microcaecilia_unicolor/aMicUni1/genomic_data/dovetail/ Ilm: status: 4 url: '#' @@ -5014,29 +4987,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Myotis_myotis/mMyoMyo1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Microcaecilia_unicolor/aMicUni1/genomic_data/pacbio/ trio: '' - vglId: mMyoMyo1 - vgp_phase: phase3 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_009819825.1 + vglId: aMicUni1 + vgp_phase: phase1 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_015220075.1 class: Aves,birds - common_name: Red-legged seriema - family: Cariamidae + common_name: gyrfalcon + family: Falconidae hub: vgl - order: Cariamiformes - scientific_name: Cariama cristata + order: Falconiformes + scientific_name: Falco rusticolus status: 8-NCBI - taxon_id: '54380' + taxon_id: '120794' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cariama_cristata/bCarCri1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Falco_rusticolus/bFalRus1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cariama_cristata/bCarCri1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Falco_rusticolus/bFalRus1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cariama_cristata/bCarCri1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Falco_rusticolus/bFalRus1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -5045,60 +5018,61 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cariama_cristata/bCarCri1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Falco_rusticolus/bFalRus1/genomic_data/pacbio/ trio: '' - vglId: bCarCri1 + vglId: bFalRus1 vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_015220745.1 - class: Actinopterygii,Bony fishes - common_name: honeycomb rockfish - family: Sebastidae +- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Vidua_chalybeata/bVidCha1/assembly_vgp_standard_1.5/ + class: Aves,birds + common_name: village indigobird + family: Estrildidae hub: vgl - order: Perciformes - scientific_name: Sebastes umbrosus - status: 8-NCBI - taxon_id: '72105' + order: Passeriformes + scientific_name: Vidua chalybeata + status: 5-asm_done + taxon_id: '81927' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sebastes_umbrosus/fSebUmb1/genomic_data/10x/ + status: 4 + url: '#' BN: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sebastes_umbrosus/fSebUmb1/genomic_data/bionano/ + status: 4 + url: '#' HiC: + link: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Vidua_chalybeata/bVidCha2/genomic_data/arima/ status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sebastes_umbrosus/fSebUmb1/genomic_data/hic/ + url: '#' Ilm: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sebastes_umbrosus/fSebUmb1/genomic_data/illumina/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Vidua_chalybeata/bVidCha1/genomic_data/illumina/ ONT: status: 4 url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sebastes_umbrosus/fSebUmb1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Vidua_chalybeata/bVidCha1/genomic_data/pacbio/ trio: '' - vglId: fSebUmb1 - vgp_phase: phase2 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_011762595.1 - class: Mammalia,mammals - common_name: common bottlenose dolphin - family: Delphinidae + vglId: bVidCha1 + vgp_phase: phase3 +- asm: '#' + class: Amphibia,amphibians + common_name: rufous frog + family: Leptodactylidae hub: vgl - order: Artiodactyla - scientific_name: Tursiops truncatus - status: 8-NCBI - taxon_id: '9739' + order: Anura + scientific_name: Leptodactylus fuscus + status: 2-data_progress + taxon_id: '238119' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Tursiops_truncatus/mTurTru1/genomic_data/10x/ + status: 4 + url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Tursiops_truncatus/mTurTru1/genomic_data/bionano/ + url: '#' HiC: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Tursiops_truncatus/mTurTru1/genomic_data/arima/ + status: 2 + url: '#' Ilm: status: 4 url: '#' @@ -5106,30 +5080,29 @@ toc: status: 4 url: '#' PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Tursiops_truncatus/mTurTru1/genomic_data/pacbio/ - trio: mTurTru2/mTurTru3 - vglId: mTurTru1 - vgp_phase: phase3 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_008692025.1 - class: Mammalia,mammals - common_name: vaquita - family: Phocoenidae - hub: vgl - order: Artiodactyla - scientific_name: Phocoena sinus + status: 0 + url: '#' + vglId: aLepFus1 + vgp_phase: phase2 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_903684865.1 + class: Actinopterygii,Bony fishes + common_name: zebrafish + family: Danionidae + hub: others + order: Cypriniformes + scientific_name: Danio rerio status: 8-NCBI - taxon_id: '42100' + taxon_id: '7955' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Phocoena_sinus/mPhoSin1/genomic_data/10x/ + url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Phocoena_sinus/mPhoSin1/genomic_data/bionano/ + url: '#' HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Phocoena_sinus/mPhoSin1/genomic_data/arima/ + url: '#' Ilm: status: 4 url: '#' @@ -5138,29 +5111,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Phocoena_sinus/mPhoSin1/genomic_data/pacbio/ + url: '#' trio: '' - vglId: mPhoSin1 + vglId: fDreABH1 vgp_phase: phase1 - asm: '#' - class: Chondrichthyes,cartilaginous fishes - common_name: Caribbean electric ray - family: Narcinidae + class: Aves,birds + common_name: song sparrow + family: Passerellidae hub: vgl - order: Torpediniformes - scientific_name: Narcine bancroftii + order: Passeriformes + scientific_name: Melospiza georgiana status: 2-data_progress - taxon_id: '1343680' + taxon_id: '44398' techs: 10X: status: 4 url: '#' BN: - status: 2 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Melospiza_georgiana/bMelGeo1/genomic_data/bionano/ HiC: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Melospiza_georgiana/bMelGeo1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -5168,29 +5141,30 @@ toc: status: 4 url: '#' PB: - status: 0 - url: '#' - vglId: sNarBan1 - vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_009769465.1 - class: Aves,birds - common_name: red-crested turaco - family: Musophagidae + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Melospiza_georgiana/bMelGeo1/genomic_data/pacbio/ + trio: '' + vglId: bMelGeo1 + vgp_phase: phase4 +- asm: '#' + class: Reptilia,reptiles + common_name: Aeolian wall lizard + family: Lacertidae hub: vgl - order: Musophagiformes - scientific_name: Tauraco erythrolophus - status: 8-NCBI - taxon_id: '121530' + order: Squamata + scientific_name: Podarcis raffonei + status: 4-asm_progress + taxon_id: '65483' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Tauraco_erythrolophus/bTauEry1/genomic_data/10x/ + status: 4 + url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Tauraco_erythrolophus/bTauEry1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Podarcis_raffonei/rPodRaf1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Tauraco_erythrolophus/bTauEry1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Podarcis_raffonei/rPodRaf1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -5199,29 +5173,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Tauraco_erythrolophus/bTauEry1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Podarcis_raffonei/rPodRaf1/genomic_data/pacbio/ trio: '' - vglId: bTauEry1 - vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_902167405.1 - class: Actinopterygii,Bony fishes - common_name: Atlantic cod - family: Gadidae + vglId: rPodRaf1 + vgp_phase: phase3 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_014839995.1 + class: Actinopterygii,Bony fishes + common_name: freshwater garfish + family: Belonidae hub: others - order: Gadiformes - scientific_name: Gadus morhua + order: Beloniformes + scientific_name: Xenentodon cancila status: 8-NCBI - taxon_id: '8049' + taxon_id: '129108' techs: 10X: status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Xenentodon_cancila/fXenCan1/genomic_data/10x/ BN: status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Xenentodon_cancila/fXenCan1/genomic_data/bionano/ HiC: status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Xenentodon_cancila/fXenCan1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -5230,29 +5204,29 @@ toc: url: '#' PB: status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Xenentodon_cancila/fXenCan1/genomic_data/pacbio/ trio: '' - vglId: fGadMor1 + vglId: fXenCan1 vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_015237465.2 - class: Reptilia,reptiles - common_name: Green sea turtle - family: Cheloniidae - hub: others - order: Testudines - scientific_name: Chelonia mydas - status: 8-NCBI - taxon_id: '8469' +- asm: '#' + class: Aves,birds + common_name: Whooping crane + family: Gruidae + hub: vgl + order: Gruiformes + scientific_name: Grus americana + status: 4-asm_progress + taxon_id: '9117' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Chelonia_mydas/rCheMyd1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Grus_americana/bGruAme1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Chelonia_mydas/rCheMyd1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Grus_americana/bGruAme1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Chelonia_mydas/rCheMyd1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Grus_americana/bGruAme1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -5261,29 +5235,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Chelonia_mydas/rCheMyd1/genomic_data/pacbio/ - trio: '' - vglId: rCheMyd1 - vgp_phase: phase1 -- asm: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Grus_americana/bGruAme1/genomic_data/pacbio/ + trio: bGruAme2/bGruAme3 + vglId: bGruAme1 + vgp_phase: phase3 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_009762535.1 class: Actinopterygii,Bony fishes - common_name: lesser salmon catfish - family: Ariidae + common_name: New Zealand spotty + family: Labridae hub: vgl - order: Siluriformes - scientific_name: Neoarius graeffei - status: 2-data_progress - taxon_id: '443677' + order: Perciformes + scientific_name: Notolabrus celidotus + status: 8-NCBI + taxon_id: '1203425' techs: 10X: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Notolabrus_celidotus/fNotCel1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Neoarius_graeffei/fNeoGra1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Notolabrus_celidotus/fNotCel1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Neoarius_graeffei/fNeoGra1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Notolabrus_celidotus/fNotCel1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -5291,30 +5265,30 @@ toc: status: 4 url: '#' PB: - status: 2 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Notolabrus_celidotus/fNotCel1/genomic_data/pacbio/ trio: '' - vglId: fNeoGra1 + vglId: fNotCel1 vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_009819775.1 - class: Aves,birds - common_name: American flamingo - family: Phoenicopteridae +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_900634625.2 + class: Actinopterygii,Bony fishes + common_name: Indian glassy fish + family: Ambassidae hub: vgl - order: Phoenicopteriformes - scientific_name: Phoenicopterus ruber + order: Ovalentaria + scientific_name: Parambassis ranga status: 8-NCBI - taxon_id: '9217' + taxon_id: '210632' techs: 10X: status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Parambassis_ranga/fParRan2/genomic_data/10x/ BN: status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Parambassis_ranga/fParRan2/genomic_data/bionano/ HiC: status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Parambassis_ranga/fParRan2/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -5323,29 +5297,29 @@ toc: url: '#' PB: status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Parambassis_ranga/fParRan2/genomic_data/pacbio/ trio: '' - vglId: bPhoRub1 + vglId: fParRan2 vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_900963305.2 - class: Actinopterygii,Bony fishes - common_name: live sharksucker - family: Echeneidae - hub: others - order: Carangiformes - scientific_name: Echeneis naucrates - status: 8-NCBI - taxon_id: '173247' +- asm: '#' + class: Amphibia,amphibians + common_name: fire salamander + family: Salamandridae + hub: vgl + order: Caudata + scientific_name: Salamandra salamandra + status: 2-data_progress + taxon_id: '57571' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Echeneis_naucrates/fEcheNa1/genomic_data/10x/ + status: 4 + url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Echeneis_naucrates/fEcheNa1/genomic_data/bionano/ + url: '#' HiC: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Echeneis_naucrates/fEcheNa1/genomic_data/dovetail/ + status: 0 + url: '#' Ilm: status: 4 url: '#' @@ -5353,30 +5327,29 @@ toc: status: 4 url: '#' PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Echeneis_naucrates/fEcheNa1/genomic_data/pacbio/ - trio: '' - vglId: fEcheNa1 + status: 0 + url: '#' + vglId: aSalSal1 vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_014108255.1 - class: Mammalia,mammals - common_name: greater horseshoe bat - family: Rhinolophidae +- asm: '#' + class: Aves,birds + common_name: blue jay + family: Corvidae hub: vgl - order: Chiroptera - scientific_name: Rhinolophus ferrumequinum - status: 8-NCBI - taxon_id: '59479' + order: Passeriformes + scientific_name: Cyanocitta cristata + status: 0-data_queued + taxon_id: '28727' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rhinolophus_ferrumequinum/mRhiFer1/genomic_data/10x/ + status: 4 + url: '#' BN: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rhinolophus_ferrumequinum/mRhiFer1/genomic_data/bionano/ + status: 0 + url: '#' HiC: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rhinolophus_ferrumequinum/mRhiFer1/genomic_data/phase/ + status: 0 + url: '#' Ilm: status: 4 url: '#' @@ -5384,30 +5357,29 @@ toc: status: 4 url: '#' PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rhinolophus_ferrumequinum/mRhiFer1/genomic_data/pacbio/ - trio: '' - vglId: mRhiFer1 - vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_017639485.1 - class: Aves,birds - common_name: European golden plover - family: Charadriidae + status: 0 + url: '#' + vglId: bCyaCri1 + vgp_phase: phase4 +- asm: '#' + class: Reptilia,reptiles + common_name: Florida worm lizard + family: Rhineuridae hub: vgl - order: Charadriiformes - scientific_name: Pluvialis apricaria - status: 8-NCBI - taxon_id: '670352' + order: Squamata + scientific_name: Rhineura floridana + status: 2-data_progress + taxon_id: '261503' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pluvialis_apricaria/bPluApr1/genomic_data/10x/ + status: 4 + url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pluvialis_apricaria/bPluApr1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rhineura_floridana/rRhiFlo1/genomic_data/bionano/ HiC: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pluvialis_apricaria/bPluApr1/genomic_data/arima/ + status: 0 + url: '#' Ilm: status: 4 url: '#' @@ -5415,29 +5387,29 @@ toc: status: 4 url: '#' PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pluvialis_apricaria/bPluApr1/genomic_data/pacbio/ + status: 0 + url: '#' trio: '' - vglId: bPluApr1 + vglId: rRhiFlo1 vgp_phase: phase1 - asm: '#' - class: Aves,birds - common_name: Brown-headed cowbird - family: Icteridae + class: ',arthropods' + common_name: snow crab + family: Majidae hub: vgl - order: Passeriformes - scientific_name: Molothrus ater - status: 0-data_queued - taxon_id: '84834' + order: Decapoda + scientific_name: Chionoecetes opilio + status: 2-data_progress + taxon_id: '41210' techs: 10X: status: 4 url: '#' BN: - status: 0 + status: 3 url: '#' HiC: - status: 0 + status: 1 url: '#' Ilm: status: 4 @@ -5446,30 +5418,29 @@ toc: status: 4 url: '#' PB: - status: 0 + status: 2 url: '#' - vglId: bMolAte1 - vgp_phase: phase3 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_017976375.1 + vglId: qChiOpi2 + vgp_phase: phase2 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_008658365.1 class: Aves,birds - common_name: common cuckoo - family: Cuculidae + common_name: razorbill + family: Alcidae hub: vgl - order: Cuculiformes - scientific_name: Cuculus canorus + order: Charadriiformes + scientific_name: Alca torda status: 8-NCBI - taxon_id: '55661' + taxon_id: '28689' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cuculus_canorus/bCucCan1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Alca_torda/bAlcTor1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cuculus_canorus/bCucCan1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Alca_torda/bAlcTor1/genomic_data/bionano/ HiC: - link: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cuculus_canorus/bCucCan2/genomic_data/arima/ status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Alca_torda/bAlcTor1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -5478,60 +5449,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cuculus_canorus/bCucCan1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Alca_torda/bAlcTor1/genomic_data/pacbio/ trio: '' - vglId: bCucCan1 - vgp_phase: phase1 -- asm: '#' + vglId: bAlcTor1 + vgp_phase: phase2 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_008692025.1 class: Mammalia,mammals - common_name: Eurasian badger - family: Mustelidae - hub: others - order: Carnivora - scientific_name: Meles meles - status: 2-data_progress - taxon_id: '9662' - techs: - 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Meles_meles/mMelMel3/genomic_data/10x/ - BN: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Meles_meles/mMelMel3/genomic_data/bionano/ - HiC: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Meles_meles/mMelMel3/genomic_data/arima/ - Ilm: - status: 0 - url: '#' - ONT: - status: 0 - url: '#' - PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Meles_meles/mMelMel3/genomic_data/pacbio/ - trio: mMelMel1/mMelMel2 - vglId: mMelMel3 - vgp_phase: phase3 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_902713425.1 - class: Actinopterygii,Bony fishes - common_name: sterlet - family: Acipenseridae - hub: others - order: Acipenseriformes - scientific_name: Acipenser ruthenus + common_name: vaquita + family: Phocoenidae + hub: vgl + order: Artiodactyla + scientific_name: Phocoena sinus status: 8-NCBI - taxon_id: '7906' + taxon_id: '42100' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Acipenser_ruthenus/fAciRut3/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Phocoena_sinus/mPhoSin1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Acipenser_ruthenus/fAciRut3/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Phocoena_sinus/mPhoSin1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Acipenser_ruthenus/fAciRut3/genomic_data/dovetail/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Phocoena_sinus/mPhoSin1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -5540,29 +5480,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Acipenser_ruthenus/fAciRut3/genomic_data/pacbio/ - trio: fAciRut1/fAciRut2 - vglId: fAciRut3 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Phocoena_sinus/mPhoSin1/genomic_data/pacbio/ + trio: '' + vglId: mPhoSin1 vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_003957555.1 - class: Aves,birds - common_name: Anna's hummingbird - family: Trochilidae +- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Bombina_bombina/aBomBom1/assembly_vgp_standard_1.6/ + class: Amphibia,amphibians + common_name: fire-bellied toad + family: Bombinatoridae hub: others - order: Apodiformes - scientific_name: Calypte anna - status: 8-NCBI - taxon_id: '9244' + order: Anura + scientific_name: Bombina bombina + status: 5-asm_done + taxon_id: '8345' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Calypte_anna/bCalAnn1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Bombina_bombina/aBomBom1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Calypte_anna/bCalAnn1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Bombina_bombina/aBomBom1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Calypte_anna/bCalAnn1/genomic_data/phase/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Bombina_bombina/aBomBom1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -5571,29 +5511,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Calypte_anna/bCalAnn1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Bombina_bombina/aBomBom1/genomic_data/pacbio/ trio: '' - vglId: bCalAnn1 + vglId: aBomBom1 vgp_phase: phase1 - asm: '#' - class: Aves,birds - common_name: Whooping crane - family: Gruidae + class: Chondrichthyes,cartilaginous fishes + common_name: horn shark + family: Heterodontidae hub: vgl - order: Gruiformes - scientific_name: Grus americana - status: 4-asm_progress - taxon_id: '9117' + order: Heterodontiformes + scientific_name: Heterodontus francisci + status: 2-data_progress + taxon_id: '7792' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Grus_americana/bGruAme1/genomic_data/10x/ + status: 4 + url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Grus_americana/bGruAme1/genomic_data/bionano/ + url: '#' HiC: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Grus_americana/bGruAme1/genomic_data/arima/ + status: 0 + url: '#' Ilm: status: 4 url: '#' @@ -5601,30 +5541,29 @@ toc: status: 4 url: '#' PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Grus_americana/bGruAme1/genomic_data/pacbio/ - trio: bGruAme2/bGruAme3 - vglId: bGruAme1 - vgp_phase: phase3 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_009819595.1 - class: Aves,birds - common_name: carmine bee-eater - family: Meropidae - hub: vgl - order: Coraciiformes - scientific_name: Merops nubicus + status: 0 + url: '#' + vglId: sHetFra1 + vgp_phase: phase1 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_905171765.1 + class: Amphibia,amphibians + common_name: common toad + family: Bufonidae + hub: others + order: Anura + scientific_name: Bufo bufo status: 8-NCBI - taxon_id: '57421' + taxon_id: '8384' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Merops_nubicus/bMerNub1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Bufo_bufo/aBufBuf1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Merops_nubicus/bMerNub1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Bufo_bufo/aBufBuf1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Merops_nubicus/bMerNub1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Bufo_bufo/aBufBuf1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -5633,56 +5572,25 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Merops_nubicus/bMerNub1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Bufo_bufo/aBufBuf1/genomic_data/pacbio/ trio: '' - vglId: bMerNub1 + vglId: aBufBuf1 vgp_phase: phase1 -- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Branta_leucopsis/bBraLeu1/assembly_vgp_standard_1.5/ - class: Aves,birds - common_name: barnacle goose - family: Anatidae - hub: vgl - order: Anseriformes - scientific_name: Branta leucopsis - status: 5-asm_done - taxon_id: '184711' - techs: - 10X: - status: 4 - url: '#' - BN: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Branta_leucopsis/bBraLeu1/genomic_data/bionano/ - HiC: - status: 4 - url: '#' - Ilm: - status: 4 - url: '#' - ONT: - status: 4 - url: '#' - PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Branta_leucopsis/bBraLeu1/genomic_data/pacbio/ - trio: '' - vglId: bBraLeu1 - vgp_phase: phase3 - asm: '#' class: Mammalia,mammals - common_name: Botta's pocket gopher - family: Geomyidae + common_name: Bolivian squirrel monkey + family: Cebidae hub: vgl - order: Rodentia - scientific_name: Thomomys bottae + order: Primates + scientific_name: Saimiri boliviensis status: 2-data_progress - taxon_id: '10013' + taxon_id: '27679' techs: 10X: status: 4 url: '#' BN: - status: 3 + status: 2 url: '#' HiC: status: 0 @@ -5696,17 +5604,17 @@ toc: PB: status: 0 url: '#' - vglId: mThoBot1 - vgp_phase: phase1 + vglId: mSaiBol1 + vgp_phase: phase3 - asm: '#' - class: Chondrichthyes,cartilaginous fishes - common_name: bramble shark - family: Echinorhinidae + class: Mammalia,mammals + common_name: Philippine flying lemur + family: Cynocephalidae hub: vgl - order: Echinorhiniformes - scientific_name: Echinorhinus brucus - status: 0-data_queued - taxon_id: '862826' + order: Dermoptera + scientific_name: Cynocephalus volans + status: 1-DNA_isolation + taxon_id: '110931' techs: 10X: status: 4 @@ -5726,27 +5634,27 @@ toc: PB: status: 0 url: '#' - vglId: sEchBru1 + vglId: mCynVol1 vgp_phase: phase1 -- asm: '#' - class: Aves,birds - common_name: great crested grebe - family: Podicipedidae - hub: vgl - order: Podicipediformes - scientific_name: Podiceps cristatus - status: 2-data_progress - taxon_id: '345573' +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_013347855.1 + class: Actinopteri,Bony fishes + common_name: European eel + family: Anguillidae + hub: others + order: Anguilliformes + scientific_name: Anguilla anguilla + status: 8-NCBI + taxon_id: '7936' techs: 10X: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Anguilla_anguilla/fAngAng1/genomic_data/10x/ BN: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Anguilla_anguilla/fAngAng1/genomic_data/bionano/ HiC: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Anguilla_anguilla/fAngAng1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -5754,29 +5662,30 @@ toc: status: 4 url: '#' PB: - status: 0 - url: '#' - vglId: bPodCri1 + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Anguilla_anguilla/fAngAng1/genomic_data/pacbio/ + trio: '' + vglId: fAngAng1 vgp_phase: phase1 -- asm: '#' - class: Aves,birds - common_name: Black-capped chickadee - family: Paridae - hub: vgl - order: Passeriformes - scientific_name: Poecile atricapillus - status: 1-DNA_isolation - taxon_id: '48891' +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_013368585.1 + class: Actinopterygii,Bony fishes + common_name: Indo-Pacific tarpon + family: Megalopidae + hub: others + order: Elopiformes + scientific_name: Megalops cyprinoides + status: 8-NCBI + taxon_id: '118141' techs: 10X: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Megalops_cyprinoides/fMegCyp1/genomic_data/10x/ BN: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Megalops_cyprinoides/fMegCyp1/genomic_data/bionano/ HiC: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Megalops_cyprinoides/fMegCyp1/genomic_data/hic/ Ilm: status: 4 url: '#' @@ -5784,26 +5693,27 @@ toc: status: 4 url: '#' PB: - status: 0 - url: '#' - vglId: bPoeAtr1 - vgp_phase: phase3 + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Megalops_cyprinoides/fMegCyp1/genomic_data/pacbio/ + trio: '' + vglId: fMegCyp1 + vgp_phase: phase1 - asm: '#' - class: Aves,birds - common_name: Swift parrot - family: Psittacidae + class: Mammalia,mammals + common_name: Chinese pangolin + family: Manidae hub: vgl - order: Psittaciformes - scientific_name: Lathamus discolor + order: Pholidota + scientific_name: Manis pentadactyla status: 2-data_progress - taxon_id: '678569' + taxon_id: '143292' techs: 10X: status: 4 url: '#' BN: - status: 2 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Manis_pentadactyla/mManPen7/genomic_data/bionano/ HiC: status: 0 url: '#' @@ -5814,29 +5724,30 @@ toc: status: 4 url: '#' PB: - status: 0 + status: 2 url: '#' - vglId: bLatDis1 - vgp_phase: phase3 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_902148845.1 - class: Actinopterygii,Bony fishes - common_name: jewelled blenny - family: Blenniidae - hub: others - order: Blenniiformes - scientific_name: Salarias fasciatus + trio: '' + vglId: mManPen7 + vgp_phase: phase1 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_009829145.1 + class: Aves,birds + common_name: lance-tailed manakin + family: Pipridae + hub: vgl + order: Passeriformes + scientific_name: Chiroxiphia lanceolata status: 8-NCBI - taxon_id: '181472' + taxon_id: '296741' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Salarias_fasciatus/fSalaFa1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Chiroxiphia_lanceolata/bChiLan1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Salarias_fasciatus/fSalaFa1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Chiroxiphia_lanceolata/bChiLan1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Salarias_fasciatus/fSalaFa1/genomic_data/dovetail/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Chiroxiphia_lanceolata/bChiLan1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -5845,19 +5756,50 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Salarias_fasciatus/fSalaFa1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Chiroxiphia_lanceolata/bChiLan1/genomic_data/pacbio/ trio: '' - vglId: fSalaFa1 + vglId: bChiLan1 vgp_phase: phase1 +- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pangasianodon_hypophthalmus/fPanHyp1/assembly_vgp_standard_2.1/ + class: Actinopterygii,Bony fishes + common_name: striped catfish + family: Pangasiidae + hub: others + order: Siluriformes + scientific_name: Pangasianodon hypophthalmus + status: 5-asm_done + taxon_id: '310915' + techs: + 10X: + status: 4 + url: '#' + BN: + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pangasianodon_hypophthalmus/fPanHyp1/genomic_data/bionano/ + HiC: + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pangasianodon_hypophthalmus/fPanHyp1/genomic_data/arima/ + Ilm: + status: 4 + url: '#' + ONT: + status: 4 + url: '#' + PB: + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pangasianodon_hypophthalmus/fPanHyp1/genomic_data/pacbio/ + trio: '' + vglId: fPanHyp1 + vgp_phase: phase2 - asm: '#' - class: Aves,birds - common_name: white-throated sparrow - family: Passerellidae + class: Mammalia,mammals + common_name: springhare + family: Pedetidae hub: vgl - order: Passeriformes - scientific_name: Zonotrichia albicollis + order: Rodentia + scientific_name: Pedetes capensis status: 0-data_queued - taxon_id: '44394' + taxon_id: '10023' techs: 10X: status: 4 @@ -5877,58 +5819,57 @@ toc: PB: status: 0 url: '#' - vglId: bZonAlb1 - vgp_phase: phase3 -- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dendropsophus_ebraccatus/aDenEbr1/assembly_nhgri_trio_1.6/ - class: Amphibia,amphibians - common_name: hourglass treefrog - family: Hylidae + vglId: mPedCap1 + vgp_phase: phase1 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_003957565.2 + class: Aves,birds + common_name: zebra finch + family: Estrildidae hub: vgl - order: Anura - scientific_name: Dendropsophus ebraccatus - status: 6-asm_curation - taxon_id: '150705' + order: Passeriformes + scientific_name: Taeniopygia guttata + status: 8-NCBI + taxon_id: '59729' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dendropsophus_ebraccatus/aDenEbr1/genomic_data/10x/ + url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dendropsophus_ebraccatus/aDenEbr1/genomic_data/bionano/ + url: '#' HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dendropsophus_ebraccatus/aDenEbr1/genomic_data/arima/ + url: '#' Ilm: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dendropsophus_ebraccatus/aDenEbr1/genomic_data/illumina/ + status: 4 + url: '#' ONT: status: 4 url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dendropsophus_ebraccatus/aDenEbr1/genomic_data/pacbio/ - trio: aDenEbr4/aDenEbr5 - vglId: aDenEbr1 - vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_009764595.1 + url: '#' + vglId: bTaeGut1 + vgp_phase: other +- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Falco_peregrinus/bFalPer1/assembly_vgp_standard_2.0/ class: Aves,birds - common_name: common yellowthroat - family: Parulidae + common_name: peregrine falcon + family: Falconidae hub: vgl - order: Passeriformes - scientific_name: Geothlypis trichas - status: 8-NCBI - taxon_id: '135433' + order: Falconiformes + scientific_name: Falco peregrinus + status: 6-asm_curation + taxon_id: '8954' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Geothlypis_trichas/bGeoTri1/genomic_data/10x/ + status: 4 + url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Geothlypis_trichas/bGeoTri1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Falco_peregrinus/bFalPer1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Geothlypis_trichas/bGeoTri1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Falco_peregrinus/bFalPer1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -5937,29 +5878,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Geothlypis_trichas/bGeoTri1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Falco_peregrinus/bFalPer1/genomic_data/pacbio/ trio: '' - vglId: bGeoTri1 - vgp_phase: phase2 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_905171775.1 - class: Amphibia,amphibians - common_name: common frog - family: Ranidae - hub: others - order: Anura - scientific_name: Rana temporaria - status: 8-NCBI - taxon_id: '8407' + vglId: bFalPer1 + vgp_phase: phase4 +- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lemur_catta/mLemCat1/assembly_curated/ + class: Mammalia,mammals + common_name: Ring-tailed lemur + family: Lemuridae + hub: vgl + order: Lemuriformes + scientific_name: Lemur catta + status: 7-asm_curated + taxon_id: '9447' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rana_temporaria/aRanTem1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lemur_catta/mLemCat1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rana_temporaria/aRanTem1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lemur_catta/mLemCat1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rana_temporaria/aRanTem1/genomic_data/dovetail/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lemur_catta/mLemCat1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -5968,29 +5909,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rana_temporaria/aRanTem1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lemur_catta/mLemCat1/genomic_data/pacbio/ trio: '' - vglId: aRanTem1 + vglId: mLemCat1 vgp_phase: phase1 - asm: '#' - class: Aves,birds - common_name: chicken - family: Phasianidae + class: Actinopterygii,Bony fishes + common_name: chub mackerel + family: Scombridae hub: vgl - order: Galliformes - scientific_name: Gallus gallus - status: 7-asm_curated - taxon_id: '9031' + order: Scombriformes + scientific_name: Scomber japonicus + status: 3-data_done + taxon_id: '13676' techs: 10X: status: 4 url: '#' BN: - status: 1 + status: 0 url: '#' HiC: status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Scomber_japonicus/fScoJap1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -5999,28 +5940,29 @@ toc: url: '#' PB: status: 1 - url: '#' - vglId: bGalGal4 - vgp_phase: other -- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Turdus_merula/bTurMer1/assembly_v0/ - class: Aves,birds - common_name: blackbird - family: Turdidae + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Scomber_japonicus/fScoJap1/genomic_data/pacbio/ + trio: '' + vglId: fScoJap1 + vgp_phase: phase1 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_011100635.1 + class: Mammalia,mammals + common_name: common brushtail + family: Phalangeridae hub: vgl - order: Passeriformes - scientific_name: Turdus merula - status: 5-asm_done - taxon_id: '9187' + order: Diprotodontia + scientific_name: Trichosurus vulpecula + status: 8-NCBI + taxon_id: '9337' techs: 10X: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Trichosurus_vulpecula/mTriVul1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Turdus_merula/bTurMer1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Trichosurus_vulpecula/mTriVul1/genomic_data/bionano/ HiC: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Trichosurus_vulpecula/mTriVul1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -6029,29 +5971,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Turdus_merula/bTurMer1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Trichosurus_vulpecula/mTriVul1/genomic_data/pacbio/ trio: '' - vglId: bTurMer1 - vgp_phase: phase3 -- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Tautogolabrus_adspersus/fTauAds1/assembly_curated/ - class: Actinopterygii,Bony fishes - common_name: cunner - family: Labridae - hub: vgl - order: Perciformes - scientific_name: Tautogolabrus adspersus - status: 7-asm_curated - taxon_id: '34787' + vglId: mTriVul1 + vgp_phase: phase1 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_905171775.1 + class: Amphibia,amphibians + common_name: common frog + family: Ranidae + hub: others + order: Anura + scientific_name: Rana temporaria + status: 8-NCBI + taxon_id: '8407' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Tautogolabrus_adspersus/fTauAds1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rana_temporaria/aRanTem1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Tautogolabrus_adspersus/fTauAds1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rana_temporaria/aRanTem1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Tautogolabrus_adspersus/fTauAds1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rana_temporaria/aRanTem1/genomic_data/dovetail/ Ilm: status: 4 url: '#' @@ -6060,60 +6002,59 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Tautogolabrus_adspersus/fTauAds1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rana_temporaria/aRanTem1/genomic_data/pacbio/ trio: '' - vglId: fTauAds1 - vgp_phase: phase3 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_910589615.1 - class: Actinopterygii,Bony fishes - common_name: longspined bullhead - family: Cottidae - hub: others - order: Perciformes - scientific_name: Taurulus bubalis - status: 8-NCBI - taxon_id: '61643' + vglId: aRanTem1 + vgp_phase: phase1 +- asm: '#' + class: Amphibia,amphibians + common_name: tailed frog + family: Ascaphidae + hub: vgl + order: Anura + scientific_name: Ascaphus truei + status: 2-data_progress + taxon_id: '8439' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Taurulus_bubalis/fTauBub2/genomic_data/10x/ + status: 4 + url: '#' BN: - status: 1 + status: 3 url: '#' HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Taurulus_bubalis/fTauBub2/genomic_data/arima/ + url: '#' Ilm: - status: 1 + status: 4 url: '#' ONT: - status: 1 + status: 4 url: '#' PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Taurulus_bubalis/fTauBub2/genomic_data/pacbio/ - trio: '' - vglId: fTauBub2 - vgp_phase: phase2 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_009819605.1 + status: 2 + url: '#' + vglId: aAscTru4 + vgp_phase: phase1 +- asm: '#' class: Aves,birds - common_name: Common tern - family: Laridae + common_name: tawny frogmouth + family: Podargidae hub: vgl - order: Charadriiformes - scientific_name: Sterna hirundo - status: 8-NCBI - taxon_id: '108405' + order: Caprimulgiformes + scientific_name: Podargus strigoides + status: 2-data_progress + taxon_id: '8905' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sterna_hirundo/bSteHir1/genomic_data/10x/ + status: 4 + url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sterna_hirundo/bSteHir1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Podargus_strigoides/bPodStr1/genomic_data/bionano/ HiC: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sterna_hirundo/bSteHir1/genomic_data/arima/ + status: 2 + url: '#' Ilm: status: 4 url: '#' @@ -6121,30 +6062,30 @@ toc: status: 4 url: '#' PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sterna_hirundo/bSteHir1/genomic_data/pacbio/ + status: 0 + url: '#' trio: '' - vglId: bSteHir1 - vgp_phase: phase3 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_900634775.2 - class: Actinopterygii,Bony fishes - common_name: blunt-snouted clingfish - family: Gobiesocidae - hub: others - order: Blenniiformes - scientific_name: Gouania willdenowi - status: 8-NCBI - taxon_id: '441366' + vglId: bPodStr1 + vgp_phase: phase1 +- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Suncus_etruscus/mSunEtr1/assembly_vgp_standard_1.7/ + class: Mammalia,mammals + common_name: white-toothed pygmy shrew + family: Soricidae + hub: vgl + order: Eulipotyphla + scientific_name: Suncus etruscus + status: 6-asm_curation + taxon_id: '109475' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Gouania_willdenowi/fGouWil2/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Suncus_etruscus/mSunEtr1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Gouania_willdenowi/fGouWil2/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Suncus_etruscus/mSunEtr1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Gouania_willdenowi/fGouWil2/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Suncus_etruscus/mSunEtr1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -6153,60 +6094,60 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Gouania_willdenowi/fGouWil2/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Suncus_etruscus/mSunEtr1/genomic_data/pacbio/ trio: '' - vglId: fGouWil2 + vglId: mSunEtr1 vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_905319845.1 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_009873245.2 class: Mammalia,mammals - common_name: Greenland wolf - family: Canidae + common_name: Blue whale + family: Balaenopteridae hub: others - order: Carnivora - scientific_name: Canis lupus orion + order: Artiodactyla + scientific_name: Balaenoptera musculus status: 8-NCBI - taxon_id: '2605939' + taxon_id: '9771' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Canis_lupus_orion/mCanLor1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Balaenoptera_musculus/mBalMus1/genomic_data/10x/ BN: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Balaenoptera_musculus/mBalMus1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Canis_lupus_orion/mCanLor1/genomic_data/dovetail/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Balaenoptera_musculus/mBalMus1/genomic_data/dovetail/ Ilm: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Balaenoptera_musculus/mBalMus1/genomic_data/illumina/ ONT: status: 4 url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Canis_lupus_orion/mCanLor1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Balaenoptera_musculus/mBalMus1/genomic_data/pacbio/ trio: '' - vglId: mCanLor1 + vglId: mBalMus1 vgp_phase: phase2 -- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Hemiprocne_comata/bHemCom1/assembly_curated/ +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_907165065.1 class: Aves,birds - common_name: whiskered treeswift - family: Apodidae - hub: vgl - order: Apodiformes - scientific_name: Hemiprocne comata - status: 7-asm_curated - taxon_id: '243314' + common_name: Eurasian nightjar + family: Caprimulgidae + hub: others + order: Caprimulgiformes + scientific_name: Caprimulgus europaeus + status: 8-NCBI + taxon_id: '111811' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Hemiprocne_comata/bHemCom1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Caprimulgus_europaeus/bCapEur3/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Hemiprocne_comata/bHemCom1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Caprimulgus_europaeus/bCapEur3/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Hemiprocne_comata/bHemCom1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Caprimulgus_europaeus/bCapEur3/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -6215,29 +6156,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Hemiprocne_comata/bHemCom1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Caprimulgus_europaeus/bCapEur3/genomic_data/pacbio/ trio: '' - vglId: bHemCom1 + vglId: bCapEur3 vgp_phase: phase1 -- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Porphyrio_hochstetteri/bPorHoc1/assembly_curated/ - class: Aves,birds - common_name: South Island takahe - family: Rallidae +- asm: '#' + class: Chondrichthyes,cartilaginous fishes + common_name: Atlantic stingray + family: Dasyatidae hub: vgl - order: Gruiformes - scientific_name: Porphyrio hochstetteri - status: 7-asm_curated - taxon_id: '439704' + order: Myliobatiformes + scientific_name: Hypanus sabinus + status: 1-DNA_isolation + taxon_id: '79690' techs: 10X: status: 4 url: '#' BN: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Porphyrio_hochstetteri/bPorHoc1/genomic_data/bionano/ + status: 0 + url: '#' HiC: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Porphyrio_hochstetteri/bPorHoc1/genomic_data/arima/ + status: 0 + url: '#' Ilm: status: 4 url: '#' @@ -6245,30 +6186,29 @@ toc: status: 4 url: '#' PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Porphyrio_hochstetteri/bPorHoc1/genomic_data/pacbio/ - trio: bPorHoc2/bPorHoc3 - vglId: bPorHoc1 + status: 0 + url: '#' + vglId: sHypSab1 vgp_phase: phase2 - asm: '#' - class: Actinopterygii,Bony fishes - common_name: rainbow smelt - family: Osmeridae + class: Mammalia,mammals + common_name: pygmy sperm whale + family: Physeteridae hub: vgl - order: Osmeriformes - scientific_name: Osmerus mordax + order: Artiodactyla + scientific_name: Kogia breviceps status: 3-data_done - taxon_id: '8014' + taxon_id: '27615' techs: 10X: status: 4 url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Osmerus_mordax/fOsmMor3/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Kogia_breviceps/mKogBre1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Osmerus_mordax/fOsmMor3/genomic_data/arima/ + url: '#' Ilm: status: 4 url: '#' @@ -6276,30 +6216,60 @@ toc: status: 4 url: '#' PB: - status: 2 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Kogia_breviceps/mKogBre1/genomic_data/pacbio/ trio: '' - vglId: fOsmMor3 - vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_018492685.1 - class: Actinopterygii,Bony fishes - common_name: American shad - family: Clupeidae + vglId: mKogBre1 + vgp_phase: phase2 +- asm: '#' + class: Chondrichthyes,cartilaginous fishes + common_name: zebra shark + family: Stegostomatidae hub: vgl - order: Clupeiformes - scientific_name: Alosa sapidissima - status: 8-NCBI - taxon_id: '34773' + order: Orectolobiformes + scientific_name: Stegostoma tigrinum + status: 0-data_queued + taxon_id: '000000' + techs: + 10X: + status: 4 + url: '#' + BN: + status: 0 + url: '#' + HiC: + status: 0 + url: '#' + Ilm: + status: 4 + url: '#' + ONT: + status: 4 + url: '#' + PB: + status: 0 + url: '#' + vglId: sSteTig2 + vgp_phase: phase2 +- asm: '#' + class: Amphibia,amphibians + common_name: wood frog + family: Ranidae + hub: vgl + order: Anura + scientific_name: Rana sylvatica + status: 3-data_done + taxon_id: '45438' techs: 10X: status: 4 url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Alosa_sapidissima/fAloSap1/genomic_data/bionano/ + url: '#' HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Alosa_sapidissima/fAloSap1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rana_sylvatica/aRanSyl1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -6308,29 +6278,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Alosa_sapidissima/fAloSap1/genomic_data/pacbio/ + url: '#' trio: '' - vglId: fAloSap1 - vgp_phase: phase2 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_009819795.1 - class: Aves,birds - common_name: tufted duck - family: Anatidae + vglId: aRanSyl1 + vgp_phase: phase4 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_009769545.1 + class: Actinopterygii,Bony fishes + common_name: lumpfish + family: Cyclopteridae hub: vgl - order: Anseriformes - scientific_name: Aythya fuligula + order: Scorpaeniformes + scientific_name: Cyclopterus lumpus status: 8-NCBI - taxon_id: '219594' + taxon_id: '8103' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Aythya_fuligula/bAytFul2/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cyclopterus_lumpus/fCycLum1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Aythya_fuligula/bAytFul2/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cyclopterus_lumpus/fCycLum1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Aythya_fuligula/bAytFul2/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cyclopterus_lumpus/fCycLum1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -6339,29 +6309,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Aythya_fuligula/bAytFul2/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cyclopterus_lumpus/fCycLum1/genomic_data/pacbio/ trio: '' - vglId: bAytFul2 + vglId: fCycLum1 vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_902686455.2 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_902686445.2 class: Mammalia,mammals - common_name: Eurasian red squirrel + common_name: gray squirrel family: Sciuridae - hub: vgl + hub: others order: Rodentia - scientific_name: Sciurus vulgaris + scientific_name: Sciurus carolinensis status: 8-NCBI - taxon_id: '55149' + taxon_id: '30640' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sciurus_vulgaris/mSciVul1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sciurus_carolinensis/mSciCar1/genomic_data/10x/ BN: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sciurus_vulgaris/mSciVul1/genomic_data/bionano/ + status: 4 + url: '#' HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sciurus_vulgaris/mSciVul1/genomic_data/baylor-hic/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sciurus_carolinensis/mSciCar1/genomic_data/dovetail/ Ilm: status: 4 url: '#' @@ -6370,29 +6340,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sciurus_vulgaris/mSciVul1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sciurus_carolinensis/mSciCar1/genomic_data/pacbio/ trio: '' - vglId: mSciVul1 - vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_014839835.1 - class: Aves,birds - common_name: Downy woodpecker - family: Picidae + vglId: mSciCar1 + vgp_phase: phase4 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_900963305.2 + class: Actinopterygii,Bony fishes + common_name: live sharksucker + family: Echeneidae hub: others - order: Piciformes - scientific_name: Dryobates pubescens + order: Carangiformes + scientific_name: Echeneis naucrates status: 8-NCBI - taxon_id: '118200' + taxon_id: '173247' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dryobates_pubescens/bDryPub1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Echeneis_naucrates/fEcheNa1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dryobates_pubescens/bDryPub1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Echeneis_naucrates/fEcheNa1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dryobates_pubescens/bDryPub1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Echeneis_naucrates/fEcheNa1/genomic_data/dovetail/ Ilm: status: 4 url: '#' @@ -6401,60 +6371,61 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dryobates_pubescens/bDryPub1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Echeneis_naucrates/fEcheNa1/genomic_data/pacbio/ trio: '' - vglId: bDryPub1 - vgp_phase: phase2 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_009873245.2 - class: Mammalia,mammals - common_name: Blue whale - family: Balaenopteridae + vglId: fEcheNa1 + vgp_phase: phase1 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_900634415.1 + class: Actinopterygii,Bony fishes + common_name: channel bull blenny + family: Bovichtidae hub: others - order: Artiodactyla - scientific_name: Balaenoptera musculus + order: Perciformes + scientific_name: Cottoperca gobio status: 8-NCBI - taxon_id: '9771' + taxon_id: '56716' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Balaenoptera_musculus/mBalMus1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cottoperca_gobio/fCotGob3/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Balaenoptera_musculus/mBalMus1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cottoperca_gobio/fCotGob3/genomic_data/bionano/ HiC: + link: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cottoperca_gobio/fCotGob2/genomic_data/arima/ status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Balaenoptera_musculus/mBalMus1/genomic_data/dovetail/ + url: '#' Ilm: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Balaenoptera_musculus/mBalMus1/genomic_data/illumina/ + status: 4 + url: '#' ONT: status: 4 url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Balaenoptera_musculus/mBalMus1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cottoperca_gobio/fCotGob3/genomic_data/pacbio/ trio: '' - vglId: mBalMus1 - vgp_phase: phase2 -- asm: '#' - class: Reptilia,reptiles - common_name: snub-nosed viper - family: Viperidae - hub: vgl - order: Squamata - scientific_name: Vipera latastei - status: 6-asm_curation - taxon_id: '246179' + vglId: fCotGob3 + vgp_phase: phase1 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_017639745.1 + class: Actinopterygii,Bony fishes + common_name: Boeseman's rainbowfish + family: Melanotaeniidae + hub: others + order: Atheriniformes + scientific_name: Melanotaenia boesemani + status: 8-NCBI + taxon_id: '1250792' techs: 10X: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Melanotaenia_boesemani/fMelBoe1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Vipera_latastei/rVipLat1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Melanotaenia_boesemani/fMelBoe1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Vipera_latastei/rVipLat1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Melanotaenia_boesemani/fMelBoe1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -6463,30 +6434,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Vipera_latastei/rVipLat1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Melanotaenia_boesemani/fMelBoe1/genomic_data/pacbio/ trio: '' - vglId: rVipLat1 + vglId: fMelBoe1 vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_016904835.1 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_009819795.1 class: Aves,birds - common_name: rifleman - family: Acanthisittidae + common_name: tufted duck + family: Anatidae hub: vgl - order: Passeriformes - scientific_name: Acanthisitta chloris + order: Anseriformes + scientific_name: Aythya fuligula status: 8-NCBI - taxon_id: '57068' + taxon_id: '219594' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Acanthisitta_chloris/bAcaChl1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Aythya_fuligula/bAytFul2/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Acanthisitta_chloris/bAcaChl1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Aythya_fuligula/bAytFul2/genomic_data/bionano/ HiC: - link: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Acanthisitta_chloris/bAcaChl4/genomic_data/arima/ status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Aythya_fuligula/bAytFul2/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -6495,29 +6465,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Acanthisitta_chloris/bAcaChl1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Aythya_fuligula/bAytFul2/genomic_data/pacbio/ trio: '' - vglId: bAcaChl1 + vglId: bAytFul2 vgp_phase: phase1 - asm: '#' - class: Reptilia,reptiles - common_name: Aeolian wall lizard - family: Lacertidae + class: Aves,birds + common_name: Seychelles magpie-robin + family: Muscicapidae hub: vgl - order: Squamata - scientific_name: Podarcis raffonei - status: 4-asm_progress - taxon_id: '65483' + order: Passeriformes + scientific_name: Copsychus sechellarum + status: 2-data_progress + taxon_id: '797021' techs: 10X: status: 4 url: '#' BN: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Podarcis_raffonei/rPodRaf1/genomic_data/bionano/ + status: 2 + url: '#' HiC: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Podarcis_raffonei/rPodRaf1/genomic_data/arima/ + status: 0 + url: '#' Ilm: status: 4 url: '#' @@ -6525,30 +6495,29 @@ toc: status: 4 url: '#' PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Podarcis_raffonei/rPodRaf1/genomic_data/pacbio/ - trio: '' - vglId: rPodRaf1 - vgp_phase: phase3 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_901000725.3 + status: 0 + url: '#' + vglId: bCopSec1 + vgp_phase: phase2 +- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Tautogolabrus_adspersus/fTauAds1/assembly_curated/ class: Actinopterygii,Bony fishes - common_name: torafugu - family: Tetraodontidae + common_name: cunner + family: Labridae hub: vgl - order: Tetraodontiformes - scientific_name: Takifugu rubripes - status: 8-NCBI - taxon_id: '31033' - techs: - 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Takifugu_rubripes/fTakRub1/genomic_data/10x/ + order: Perciformes + scientific_name: Tautogolabrus adspersus + status: 7-asm_curated + taxon_id: '34787' + techs: + 10X: + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Tautogolabrus_adspersus/fTauAds1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Takifugu_rubripes/fTakRub1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Tautogolabrus_adspersus/fTauAds1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Takifugu_rubripes/fTakRub1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Tautogolabrus_adspersus/fTauAds1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -6557,60 +6526,60 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Takifugu_rubripes/fTakRub1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Tautogolabrus_adspersus/fTauAds1/genomic_data/pacbio/ trio: '' - vglId: fTakRub1 - vgp_phase: phase1 -- asm: '#' - class: Actinopterygii,Bony fishes - common_name: stoplight loosejaw - family: Stomiidae - hub: others - order: Stomiiformes - scientific_name: Malacosteus niger - status: 2-data_progress - taxon_id: '76143' + vglId: fTauAds1 + vgp_phase: phase3 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_014176215.1 + class: Mammalia,mammals + common_name: Egyptian rousette + family: Pteropodidae + hub: vgl + order: Chiroptera + scientific_name: Rousettus aegyptiacus + status: 8-NCBI + taxon_id: '9407' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Malacosteus_niger/fMalNig1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rousettus_aegyptiacus/mRouAeg1/genomic_data/10x/ BN: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rousettus_aegyptiacus/mRouAeg1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Malacosteus_niger/fMalNig1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rousettus_aegyptiacus/mRouAeg1/genomic_data/arima/ Ilm: - status: 0 + status: 4 url: '#' ONT: - status: 0 + status: 4 url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Malacosteus_niger/fMalNig1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rousettus_aegyptiacus/mRouAeg1/genomic_data/pacbio/ trio: '' - vglId: fMalNig1 + vglId: mRouAeg1 vgp_phase: phase2 -- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Corvus_hawaiiensis/bCorHaw1/assembly_curated/ - class: Aves,birds - common_name: hawaiian crow - family: Corvidae - hub: vgl - order: Passeriformes - scientific_name: Corvus hawaiiensis - status: 7-asm_curated - taxon_id: '134902' +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_902148855.1 + class: Actinopterygii,Bony fishes + common_name: orbiculate cardinalfish + family: Apogonidae + hub: others + order: Kurtiformes + scientific_name: Sphaeramia orbicularis + status: 8-NCBI + taxon_id: '375764' techs: 10X: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sphaeramia_orbicularis/fSphaOr1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Corvus_hawaiiensis/bCorHaw1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sphaeramia_orbicularis/fSphaOr1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Corvus_hawaiiensis/bCorHaw1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sphaeramia_orbicularis/fSphaOr1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -6619,29 +6588,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Corvus_hawaiiensis/bCorHaw1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sphaeramia_orbicularis/fSphaOr1/genomic_data/pacbio/ trio: '' - vglId: bCorHaw1 - vgp_phase: phase4 + vglId: fSphaOr1 + vgp_phase: phase1 - asm: '#' class: Mammalia,mammals - common_name: springhare - family: Pedetidae + common_name: gray short-tailed opossum + family: Didelphidae hub: vgl - order: Rodentia - scientific_name: Pedetes capensis - status: 0-data_queued - taxon_id: '10023' + order: Didelphimorphia + scientific_name: Monodelphis domestica + status: 2-data_progress + taxon_id: '13616' techs: 10X: status: 4 url: '#' BN: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Monodelphis_domestica/mMonDom1/genomic_data/bionano/ HiC: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Monodelphis_domestica/mMonDom1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -6649,29 +6618,30 @@ toc: status: 4 url: '#' PB: - status: 0 + status: 2 url: '#' - vglId: mPedCap1 + trio: '' + vglId: mMonDom1 vgp_phase: phase1 -- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Bombina_bombina/aBomBom1/assembly_vgp_standard_1.6/ - class: Amphibia,amphibians - common_name: fire-bellied toad - family: Bombinatoridae - hub: others - order: Anura - scientific_name: Bombina bombina - status: 5-asm_done - taxon_id: '8345' +- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Hemiscyllium_ocellatum/sHemOce1/assembly_curated/ + class: Chondrichthyes,cartilaginous fishes + common_name: epaulette shark + family: Hemiscylliidae + hub: vgl + order: Orectolobiformes + scientific_name: Hemiscyllium ocellatum + status: 7-asm_curated + taxon_id: '170820' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Bombina_bombina/aBomBom1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Hemiscyllium_ocellatum/sHemOce1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Bombina_bombina/aBomBom1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Hemiscyllium_ocellatum/sHemOce1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Bombina_bombina/aBomBom1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Hemiscyllium_ocellatum/sHemOce1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -6680,29 +6650,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Bombina_bombina/aBomBom1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Hemiscyllium_ocellatum/sHemOce1/genomic_data/pacbio/ trio: '' - vglId: aBomBom1 + vglId: sHemOce1 vgp_phase: phase1 -- asm: '#' - class: Reptilia,reptiles - common_name: Florida worm lizard - family: Rhineuridae +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_901001165.2 + class: Actinopterygii,Bony fishes + common_name: river trout + family: Salmonidae hub: vgl - order: Squamata - scientific_name: Rhineura floridana - status: 2-data_progress - taxon_id: '261503' + order: Salmoniformes + scientific_name: Salmo trutta + status: 8-NCBI + taxon_id: '8032' techs: 10X: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Salmo_trutta/fSalTru1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rhineura_floridana/rRhiFlo1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Salmo_trutta/fSalTru1/genomic_data/bionano/ HiC: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Salmo_trutta/fSalTru1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -6710,30 +6680,30 @@ toc: status: 4 url: '#' PB: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Salmo_trutta/fSalTru1/genomic_data/pacbio/ trio: '' - vglId: rRhiFlo1 + vglId: fSalTru1 vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_905171665.1 - class: Actinopterygii,Bony fishes - common_name: Atlantic horse mackerel - family: Carangidae - hub: others - order: Carangiformes - scientific_name: Trachurus trachurus +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_902686455.2 + class: Mammalia,mammals + common_name: Eurasian red squirrel + family: Sciuridae + hub: vgl + order: Rodentia + scientific_name: Sciurus vulgaris status: 8-NCBI - taxon_id: '36212' + taxon_id: '55149' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Trachurus_trachurus/fTraTra1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sciurus_vulgaris/mSciVul1/genomic_data/10x/ BN: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sciurus_vulgaris/mSciVul1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Trachurus_trachurus/fTraTra1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sciurus_vulgaris/mSciVul1/genomic_data/baylor-hic/ Ilm: status: 4 url: '#' @@ -6742,29 +6712,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Trachurus_trachurus/fTraTra1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sciurus_vulgaris/mSciVul1/genomic_data/pacbio/ trio: '' - vglId: fTraTra1 - vgp_phase: phase2 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_015227675.2 - class: Mammalia,mammals - common_name: Norway rat - family: Muridae - hub: others - order: Rodentia - scientific_name: Rattus norvegicus + vglId: mSciVul1 + vgp_phase: phase1 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_009819705.1 + class: Actinopterygii,Bony fishes + common_name: Atlantic halibut + family: Pleuronectidae + hub: vgl + order: Pleuronectiformes + scientific_name: Hippoglossus hippoglossus status: 8-NCBI - taxon_id: '10116' + taxon_id: '8267' techs: 10X: status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Hippoglossus_hippoglossus/fHipHip1/genomic_data/10x/ BN: status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Hippoglossus_hippoglossus/fHipHip1/genomic_data/bionano/ HiC: status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Hippoglossus_hippoglossus/fHipHip1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -6773,29 +6743,29 @@ toc: url: '#' PB: status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Hippoglossus_hippoglossus/fHipHip1/genomic_data/pacbio/ trio: '' - vglId: mRatNor1 - vgp_phase: phase3 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_009769625.2 + vglId: fHipHip1 + vgp_phase: phase1 +- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Haemorhous_mexicanus/bHaeMex1/assembly_vgp_standard_2.0/ class: Aves,birds - common_name: mute swan - family: Anatidae + common_name: house finch + family: Fringillidae hub: vgl - order: Anseriformes - scientific_name: Cygnus olor - status: 8-NCBI - taxon_id: '8869' + order: Passeriformes + scientific_name: Haemorhous mexicanus + status: 5-asm_done + taxon_id: '30427' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cygnus_olor/bCygOlo1/genomic_data/10x/ + status: 4 + url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cygnus_olor/bCygOlo1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Haemorhous_mexicanus/bHaeMex1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cygnus_olor/bCygOlo1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Haemorhous_mexicanus/bHaeMex1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -6804,25 +6774,25 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cygnus_olor/bCygOlo1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Haemorhous_mexicanus/bHaeMex1/genomic_data/pacbio/ trio: '' - vglId: bCygOlo1 - vgp_phase: phase3 + vglId: bHaeMex1 + vgp_phase: phase2 - asm: '#' - class: Aves,birds - common_name: American robin - family: Turdidae + class: Reptilia,reptiles + common_name: eastern musk turtle + family: Kinosternidae hub: vgl - order: Passeriformes - scientific_name: Turdus migratorius - status: 0-data_queued - taxon_id: '9188' + order: Testudines + scientific_name: Sternotherus odoratus + status: 2-data_progress + taxon_id: '142480' techs: 10X: status: 4 url: '#' BN: - status: 0 + status: 1 url: '#' HiC: status: 0 @@ -6836,17 +6806,17 @@ toc: PB: status: 0 url: '#' - vglId: bTurMig1 - vgp_phase: phase4 + vglId: rSteOdo1 + vgp_phase: phase1 - asm: '#' - class: Mammalia,mammals - common_name: chimpanzee - family: Hominidae + class: Aves,birds + common_name: great cormorant + family: Phalacrocoracidae hub: vgl - order: Primates - scientific_name: Pan troglodytes - status: 0-data_queued - taxon_id: '9598' + order: Pelecaniformes + scientific_name: Phalacrocorax carbo + status: 2-data_progress + taxon_id: '9209' techs: 10X: status: 4 @@ -6866,26 +6836,26 @@ toc: PB: status: 0 url: '#' - vglId: mPanTro2 - vgp_phase: phase4 + vglId: bPhaCar1 + vgp_phase: phase1 - asm: '#' - class: Mammalia,mammals - common_name: pygmy sperm whale - family: Physeteridae + class: Amphibia,amphibians + common_name: eastern narrow-mouthed toad + family: Microhylidae hub: vgl - order: Artiodactyla - scientific_name: Kogia breviceps - status: 3-data_done - taxon_id: '27615' + order: Anura + scientific_name: Gastrophryne carolinensis + status: 2-data_progress + taxon_id: '8429' techs: 10X: status: 4 url: '#' BN: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Kogia_breviceps/mKogBre1/genomic_data/bionano/ + status: 3 + url: '#' HiC: - status: 1 + status: 2 url: '#' Ilm: status: 4 @@ -6894,61 +6864,29 @@ toc: status: 4 url: '#' PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Kogia_breviceps/mKogBre1/genomic_data/pacbio/ - trio: '' - vglId: mKogBre1 - vgp_phase: phase2 -- asm: '#' - class: Actinopterygii,Bony fishes - common_name: John dory - family: Zeidae - hub: others - order: Zeiformes - scientific_name: Zeus faber - status: 2-data_progress - taxon_id: '64108' - techs: - 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Zeus_faber/fZeuFab1/genomic_data/10x/ - BN: - status: 0 - url: '#' - HiC: - status: 0 - url: '#' - Ilm: - status: 0 - url: '#' - ONT: - status: 0 + status: 2 url: '#' - PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Zeus_faber/fZeuFab1/genomic_data/pacbio/ - trio: '' - vglId: fZeuFab1 + vglId: aGasCar1 vgp_phase: phase1 -- asm: '#' - class: Mammalia,mammals - common_name: tammar wallaby - family: Macropodidae +- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Spatula_cyanoptera/bSpaCya1/assembly_vgp_standard_1.5/ + class: Aves,birds + common_name: cinnamon teal + family: Anatidae hub: vgl - order: Diprotodontia - scientific_name: Macropus eugenii - status: 3-data_done - taxon_id: '9315' + order: Anseriformes + scientific_name: Spatula cyanoptera + status: 5-asm_done + taxon_id: '75840' techs: 10X: status: 4 url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Macropus_eugenii/mMacEug1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Spatula_cyanoptera/bSpaCya1/genomic_data/bionano/ HiC: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Macropus_eugenii/mMacEug1/genomic_data/arima/ + status: 4 + url: '#' Ilm: status: 4 url: '#' @@ -6957,29 +6895,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Macropus_eugenii/mMacEug1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Spatula_cyanoptera/bSpaCya1/genomic_data/pacbio/ trio: '' - vglId: mMacEug1 - vgp_phase: phase1 -- asm: '#' + vglId: bSpaCya1 + vgp_phase: phase3 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_017639555.1 class: Aves,birds - common_name: blue-and-yellow macaw - family: Psittacidae + common_name: maguari stork + family: Ciconiidae hub: vgl - order: Psittaciformes - scientific_name: Ara ararauna - status: 2-data_progress - taxon_id: '9226' + order: Ciconiiformes + scientific_name: Ciconia maguari + status: 8-NCBI + taxon_id: '52777' techs: 10X: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Ciconia_maguari/bCicMag1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Ara_ararauna/bAraAra1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Ciconia_maguari/bCicMag1/genomic_data/bionano/ HiC: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Ciconia_maguari/bCicMag1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -6987,30 +6925,30 @@ toc: status: 4 url: '#' PB: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Ciconia_maguari/bCicMag1/genomic_data/pacbio/ trio: '' - vglId: bAraAra1 - vgp_phase: phase3 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_014839995.1 - class: Actinopterygii,Bony fishes - common_name: freshwater garfish - family: Belonidae + vglId: bCicMag1 + vgp_phase: phase1 +- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Scatophagus_argus/fScaArg1/assembly_curated/ + class: Enteropneusta,Bony fishes + common_name: spotted scat + family: Scatophagidae hub: others - order: Beloniformes - scientific_name: Xenentodon cancila - status: 8-NCBI - taxon_id: '129108' + order: '' + scientific_name: Scatophagus argus + status: 7-asm_curated + taxon_id: '75038' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Xenentodon_cancila/fXenCan1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Scatophagus_argus/fScaArg1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Xenentodon_cancila/fXenCan1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Scatophagus_argus/fScaArg1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Xenentodon_cancila/fXenCan1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Scatophagus_argus/fScaArg1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -7019,29 +6957,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Xenentodon_cancila/fXenCan1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Scatophagus_argus/fScaArg1/genomic_data/pacbio/ trio: '' - vglId: fXenCan1 + vglId: fScaArg1 vgp_phase: phase1 -- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dendrocygna_viduata/bDenVid1/assembly_vgp_standard_1.5/ - class: Aves,birds - common_name: white-faced whistling-duck - family: Anatidae +- asm: '#' + class: Actinopterygii,Bony fishes + common_name: trahira + family: Erythrinidae hub: vgl - order: Anseriformes - scientific_name: Dendrocygna viduata - status: 5-asm_done - taxon_id: '8876' + order: Characiformes + scientific_name: Hoplias malabaricus + status: 2-data_progress + taxon_id: '27720' techs: 10X: status: 4 url: '#' BN: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dendrocygna_viduata/bDenVid1/genomic_data/bionano/ + status: 2 + url: '#' HiC: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dendrocygna_viduata/bDenVid1/genomic_data/arima/ + status: 0 + url: '#' Ilm: status: 4 url: '#' @@ -7049,30 +6987,29 @@ toc: status: 4 url: '#' PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dendrocygna_viduata/bDenVid1/genomic_data/pacbio/ - trio: '' - vglId: bDenVid1 - vgp_phase: phase3 + status: 0 + url: '#' + vglId: fHopMal1 + vgp_phase: phase2 - asm: '#' - class: Amphibia,amphibians - common_name: wood frog - family: Ranidae + class: Aves,birds + common_name: seaside sparrow + family: Passerellidae hub: vgl - order: Anura - scientific_name: Rana sylvatica - status: 3-data_done - taxon_id: '45438' + order: Passeriformes + scientific_name: Ammodramus maritimus + status: 2-data_progress + taxon_id: '371905' techs: 10X: status: 4 url: '#' BN: status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Ammodramus_maritimus/bAmmMai1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rana_sylvatica/aRanSyl1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Ammodramus_maritimus/bAmmMai1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -7080,30 +7017,30 @@ toc: status: 4 url: '#' PB: - status: 1 + status: 2 url: '#' trio: '' - vglId: aRanSyl1 + vglId: bAmmMai1 vgp_phase: phase4 -- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Theristicus_caerulescens/bTheCae1/assembly_curated/ - class: Aves,birds - common_name: plumbeous ibis - family: Threskiornithidae +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_900747795.4 + class: Actinopterygii,Bony fishes + common_name: reedfish + family: Polypteridae hub: vgl - order: Pelecaniformes - scientific_name: Theristicus caerulescens - status: 7-asm_curated - taxon_id: '1118847' + order: Polypteriformes + scientific_name: Erpetoichthys calabaricus + status: 8-NCBI + taxon_id: '27687' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Theristicus_caerulescens/bTheCae1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Erpetoichthys_calabaricus/fErpCal1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Theristicus_caerulescens/bTheCae1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Erpetoichthys_calabaricus/fErpCal1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Theristicus_caerulescens/bTheCae1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Erpetoichthys_calabaricus/fErpCal1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -7112,29 +7049,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Theristicus_caerulescens/bTheCae1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Erpetoichthys_calabaricus/fErpCal1/genomic_data/pacbio/ trio: '' - vglId: bTheCae1 + vglId: fErpCal1 vgp_phase: phase1 - asm: '#' - class: Aves,birds - common_name: Eastern phoebe - family: Tyrannidae + class: Actinopterygii,Bony fishes + common_name: rainbow smelt + family: Osmeridae hub: vgl - order: Passeriformes - scientific_name: Sayornis phoebe - status: 0-data_queued - taxon_id: '56315' + order: Osmeriformes + scientific_name: Osmerus mordax + status: 3-data_done + taxon_id: '8014' techs: 10X: status: 4 url: '#' BN: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Osmerus_mordax/fOsmMor3/genomic_data/bionano/ HiC: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Osmerus_mordax/fOsmMor3/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -7142,59 +7079,92 @@ toc: status: 4 url: '#' PB: - status: 0 - url: '#' - vglId: bSayPho1 - vgp_phase: phase2 -- asm: '#' - class: Aves,birds - common_name: chicken - family: Phasianidae - hub: vgl - order: Galliformes - scientific_name: Gallus gallus - status: 7-asm_curated - taxon_id: '9031' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Osmerus_mordax/fOsmMor3/genomic_data/pacbio/ + trio: '' + vglId: fOsmMor3 + vgp_phase: phase1 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_910596095.1 + class: Actinopterygii,Bony fishes + common_name: southern bluefin tuna + family: Scombridae + hub: others + order: Scombriformes + scientific_name: Thunnus maccoyii + status: 8-NCBI + taxon_id: '8240' techs: 10X: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Thunnus_maccoyii/fThuMac1/genomic_data/10x/ BN: status: 1 url: '#' HiC: status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Thunnus_maccoyii/fThuMac1/genomic_data/arima/ Ilm: - status: 4 + status: 1 url: '#' ONT: - status: 4 + status: 1 url: '#' PB: status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Thunnus_maccoyii/fThuMac1/genomic_data/pacbio/ + trio: '' + vglId: fThuMac1 + vgp_phase: phase3 +- asm: '#' + class: Actinopterygii,Bony fishes + common_name: John dory + family: Zeidae + hub: others + order: Zeiformes + scientific_name: Zeus faber + status: 2-data_progress + taxon_id: '64108' + techs: + 10X: + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Zeus_faber/fZeuFab1/genomic_data/10x/ + BN: + status: 0 url: '#' - vglId: bGalGal5 - vgp_phase: other -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_009829125.1 + HiC: + status: 0 + url: '#' + Ilm: + status: 0 + url: '#' + ONT: + status: 0 + url: '#' + PB: + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Zeus_faber/fZeuFab1/genomic_data/pacbio/ + trio: '' + vglId: fZeuFab1 + vgp_phase: phase1 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_007364275.1 class: Actinopterygii,Bony fishes - common_name: Korean giant-fin mudskipper - family: Gobiidae + common_name: flier cichlid + family: Cichlidae hub: vgl - order: Gobiiformes - scientific_name: Periophthalmus magnuspinnatus + order: Cichliformes + scientific_name: Archocentrus centrarchus status: 8-NCBI - taxon_id: '409849' + taxon_id: '63155' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Periophthalmus_magnuspinnatus/fPerMag1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Archocentrus_centrarchus/fArcCen1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Periophthalmus_magnuspinnatus/fPerMag1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Archocentrus_centrarchus/fArcCen1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Periophthalmus_magnuspinnatus/fPerMag1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Archocentrus_centrarchus/fArcCen1/genomic_data/phase/ Ilm: status: 4 url: '#' @@ -7203,28 +7173,28 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Periophthalmus_magnuspinnatus/fPerMag1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Archocentrus_centrarchus/fArcCen1/genomic_data/pacbio/ trio: '' - vglId: fPerMag1 - vgp_phase: phase2 + vglId: fArcCen1 + vgp_phase: phase1 - asm: '#' - class: Chondrichthyes,cartilaginous fishes - common_name: Yucatan manta ray - family: Mobulidae + class: Aves,birds + common_name: blue-and-yellow macaw + family: Psittacidae hub: vgl - order: Myliobatiformes - scientific_name: Manta giorna + order: Psittaciformes + scientific_name: Ara ararauna status: 2-data_progress - taxon_id: '000000' + taxon_id: '9226' techs: 10X: status: 4 url: '#' BN: status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Ara_ararauna/bAraAra1/genomic_data/bionano/ HiC: - status: 1 + status: 0 url: '#' Ilm: status: 4 @@ -7233,29 +7203,30 @@ toc: status: 4 url: '#' PB: - status: 2 + status: 0 url: '#' - vglId: sManGio1 - vgp_phase: phase2 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_015220075.1 + trio: '' + vglId: bAraAra1 + vgp_phase: phase3 +- asm: '#' class: Aves,birds - common_name: gyrfalcon - family: Falconidae + common_name: speckled mousebird + family: Coliidae hub: vgl - order: Falconiformes - scientific_name: Falco rusticolus - status: 8-NCBI - taxon_id: '120794' + order: Coliiformes + scientific_name: Colius striatus + status: 2-data_progress + taxon_id: '57412' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Falco_rusticolus/bFalRus1/genomic_data/10x/ + status: 4 + url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Falco_rusticolus/bFalRus1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Colius_striatus/bColStr4/genomic_data/bionano/ HiC: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Falco_rusticolus/bFalRus1/genomic_data/arima/ + status: 2 + url: '#' Ilm: status: 4 url: '#' @@ -7263,61 +7234,61 @@ toc: status: 4 url: '#' PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Falco_rusticolus/bFalRus1/genomic_data/pacbio/ + status: 0 + url: '#' trio: '' - vglId: bFalRus1 + vglId: bColStr4 vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_017639515.1 - class: Chondrichthyes,cartilaginous fishes - common_name: great white shark - family: Alopiidae - hub: vgl - order: Lamniformes - scientific_name: Carcharodon carcharias - status: 8-NCBI - taxon_id: '13397' +- asm: '#' + class: Mammalia,mammals + common_name: Eurasian badger + family: Mustelidae + hub: others + order: Carnivora + scientific_name: Meles meles + status: 2-data_progress + taxon_id: '9662' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Carcharodon_carcharias/sCarCar2/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Meles_meles/mMelMel3/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Carcharodon_carcharias/sCarCar2/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Meles_meles/mMelMel3/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Carcharodon_carcharias/sCarCar2/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Meles_meles/mMelMel3/genomic_data/arima/ Ilm: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Carcharodon_carcharias/sCarCar2/genomic_data/illumina/ + status: 0 + url: '#' ONT: - status: 4 + status: 0 url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Carcharodon_carcharias/sCarCar2/genomic_data/pacbio/ - trio: '' - vglId: sCarCar2 - vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_009762535.1 - class: Actinopterygii,Bony fishes - common_name: New Zealand spotty - family: Labridae + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Meles_meles/mMelMel3/genomic_data/pacbio/ + trio: mMelMel1/mMelMel2 + vglId: mMelMel3 + vgp_phase: phase3 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_017639485.1 + class: Aves,birds + common_name: European golden plover + family: Charadriidae hub: vgl - order: Perciformes - scientific_name: Notolabrus celidotus + order: Charadriiformes + scientific_name: Pluvialis apricaria status: 8-NCBI - taxon_id: '1203425' + taxon_id: '670352' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Notolabrus_celidotus/fNotCel1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pluvialis_apricaria/bPluApr1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Notolabrus_celidotus/fNotCel1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pluvialis_apricaria/bPluApr1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Notolabrus_celidotus/fNotCel1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pluvialis_apricaria/bPluApr1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -7326,60 +7297,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Notolabrus_celidotus/fNotCel1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pluvialis_apricaria/bPluApr1/genomic_data/pacbio/ trio: '' - vglId: fNotCel1 + vglId: bPluApr1 vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_004027225.2 +- asm: '#' class: Aves,birds - common_name: Kakapo - family: Psittacidae - hub: others - order: Psittaciformes - scientific_name: Strigops habroptilus - status: 8-NCBI - taxon_id: '57251' + common_name: kagu + family: Rhynochetidae + hub: vgl + order: Gruiformes + scientific_name: Rhynochetos jubatus + status: 2-data_progress + taxon_id: '54386' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Strigops_habroptilus/bStrHab1/genomic_data/10x/ - BN: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Strigops_habroptilus/bStrHab1/genomic_data/bionano/ - HiC: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Strigops_habroptilus/bStrHab1/genomic_data/arima/ - Ilm: - status: 4 - url: '#' - ONT: status: 4 url: '#' - PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Strigops_habroptilus/bStrHab1/genomic_data/pacbio/ - trio: '' - vglId: bStrHab1 - vgp_phase: phase1 -- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Gopherus_flavomarginatus/rGopFla2/assembly_nhgri_trio_1.6/ - class: Reptilia,reptiles - common_name: Mexican gopher tortoise - family: Testudinidae - hub: vgl - order: Testudines - scientific_name: Gopherus flavomarginatus - status: 6-asm_curation - taxon_id: '286002' - techs: - 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Gopherus_flavomarginatus/rGopFla2/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Gopherus_flavomarginatus/rGopFla2/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rhynochetos_jubatus/bRhyJub1/genomic_data/bionano/ HiC: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Gopherus_flavomarginatus/rGopFla2/genomic_data/arima/ + status: 0 + url: '#' Ilm: status: 4 url: '#' @@ -7387,30 +7327,30 @@ toc: status: 4 url: '#' PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Gopherus_flavomarginatus/rGopFla2/genomic_data/pacbio/ - trio: rGopFla1/rGopFla3 - vglId: rGopFla2 - vgp_phase: phase4 -- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lagopus_muta/bLagMut1/assembly_vgp_standard_2.0/ + status: 0 + url: '#' + trio: '' + vglId: bRhyJub1 + vgp_phase: phase1 +- asm: '#' class: Aves,birds - common_name: rock ptarmigan - family: Phasianidae - hub: others - order: Galliformes - scientific_name: Lagopus muta - status: 5-asm_done - taxon_id: '64668' + common_name: Brown-headed cowbird + family: Icteridae + hub: vgl + order: Passeriformes + scientific_name: Molothrus ater + status: 0-data_queued + taxon_id: '84834' techs: 10X: status: 4 url: '#' BN: - status: 4 + status: 0 url: '#' HiC: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lagopus_muta/bLagMut1/genomic_data/dovetail/ + status: 0 + url: '#' Ilm: status: 4 url: '#' @@ -7418,30 +7358,29 @@ toc: status: 4 url: '#' PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lagopus_muta/bLagMut1/genomic_data/pacbio/ - trio: '' - vglId: bLagMut1 - vgp_phase: phase3 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_007399415.2 - class: Reptilia,reptiles - common_name: Goodes thornscrub tortoise - family: Testudinidae - hub: vgl - order: Testudines - scientific_name: Gopherus evgoodei + status: 0 + url: '#' + vglId: bMolAte1 + vgp_phase: phase2 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_900880675.2 + class: Actinopterygii,Bony fishes + common_name: gilthead seabream + family: Sparidae + hub: others + order: Spariformes + scientific_name: Sparus aurata status: 8-NCBI - taxon_id: '1825980' + taxon_id: '8175' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Gopherus_evgoodei/rGopEvg1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sparus_aurata/fSpaAur1/genomic_data/10x/ BN: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Gopherus_evgoodei/rGopEvg1/genomic_data/bionano/ + status: 4 + url: '#' HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Gopherus_evgoodei/rGopEvg1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sparus_aurata/fSpaAur1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -7450,29 +7389,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Gopherus_evgoodei/rGopEvg1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sparus_aurata/fSpaAur1/genomic_data/pacbio/ trio: '' - vglId: rGopEvg1 + vglId: fSpaAur1 vgp_phase: phase1 - asm: '#' class: Aves,birds - common_name: common myna - family: Sturnidae + common_name: American goldfinch + family: Fringillidae hub: vgl order: Passeriformes - scientific_name: Acridotheres tristis - status: 4-asm_progress - taxon_id: '279927' + scientific_name: Spinus tristis + status: 1-DNA_isolation + taxon_id: '54773' techs: 10X: status: 4 url: '#' BN: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Acridotheres_tristis/bAcrTri1/genomic_data/bionano/ + status: 0 + url: '#' HiC: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Acridotheres_tristis/bAcrTri1/genomic_data/arima/ + status: 0 + url: '#' Ilm: status: 4 url: '#' @@ -7480,29 +7419,28 @@ toc: status: 4 url: '#' PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Acridotheres_tristis/bAcrTri1/genomic_data/pacbio/ - trio: '' - vglId: bAcrTri1 + status: 0 + url: '#' + vglId: bSpiTri1 vgp_phase: phase3 - asm: '#' - class: Reptilia,reptiles - common_name: American alligator - family: Alligatoridae + class: Chondrichthyes,cartilaginous fishes + common_name: Yucatan manta ray + family: Mobulidae hub: vgl - order: Crocodylia - scientific_name: Alligator mississippiensis + order: Myliobatiformes + scientific_name: Manta giorna status: 2-data_progress - taxon_id: '8496' + taxon_id: '000000' techs: 10X: status: 4 url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Alligator_mississippiensis/rAllMis1/genomic_data/bionano/ + url: '#' HiC: - status: 0 + status: 1 url: '#' Ilm: status: 4 @@ -7511,30 +7449,29 @@ toc: status: 4 url: '#' PB: - status: 0 + status: 2 url: '#' - trio: '' - vglId: rAllMis1 - vgp_phase: phase1 -- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rhinolophus_sinicus/mRhiSin1/assembly_curated/ - class: Mammalia,mammals - common_name: Chinese rufous horseshoe bat - family: Rhinolophidae + vglId: sManGio1 + vgp_phase: phase2 +- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Theristicus_caerulescens/bTheCae1/assembly_curated/ + class: Aves,birds + common_name: plumbeous ibis + family: Threskiornithidae hub: vgl - order: Chiroptera - scientific_name: Rhinolophus sinicus + order: Pelecaniformes + scientific_name: Theristicus caerulescens status: 7-asm_curated - taxon_id: '89399' + taxon_id: '1118847' techs: 10X: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Theristicus_caerulescens/bTheCae1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rhinolophus_sinicus/mRhiSin1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Theristicus_caerulescens/bTheCae1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rhinolophus_sinicus/mRhiSin1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Theristicus_caerulescens/bTheCae1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -7543,29 +7480,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rhinolophus_sinicus/mRhiSin1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Theristicus_caerulescens/bTheCae1/genomic_data/pacbio/ trio: '' - vglId: mRhiSin1 - vgp_phase: phase4 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_901709675.1 + vglId: bTheCae1 + vgp_phase: phase1 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_017976325.1 class: Actinopterygii,Bony fishes - common_name: greater pipefish - family: Syngnathidae + common_name: copperband butterflyfish + family: Chaetodontidae hub: others - order: Syngnathiformes - scientific_name: Syngnathus acus + order: Chaetodontiformes + scientific_name: Chelmon rostratus status: 8-NCBI - taxon_id: '161584' + taxon_id: '109905' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Syngnathus_acus/fSynAcu1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Chelmon_rostratus/fCheRos1/genomic_data/10x/ BN: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Chelmon_rostratus/fCheRos1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Syngnathus_acus/fSynAcu1/genomic_data/dovetail/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Chelmon_rostratus/fCheRos1/genomic_data/hic/ Ilm: status: 4 url: '#' @@ -7574,60 +7511,60 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Syngnathus_acus/fSynAcu1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Chelmon_rostratus/fCheRos1/genomic_data/pacbio/ trio: '' - vglId: fSynAcu1 + vglId: fCheRos1 vgp_phase: phase1 -- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Hemiscyllium_ocellatum/sHemOce1/assembly_curated/ - class: Chondrichthyes,cartilaginous fishes - common_name: epaulette shark - family: Hemiscylliidae - hub: vgl - order: Orectolobiformes - scientific_name: Hemiscyllium ocellatum - status: 7-asm_curated - taxon_id: '170820' +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_902459465.1 + class: Asteroidea,echinoderms + common_name: European starfish + family: Asteriidae + hub: others + order: Forcipulatida + scientific_name: Asterias rubens + status: 8-NCBI + taxon_id: '7604' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Hemiscyllium_ocellatum/sHemOce1/genomic_data/10x/ + status: 4 + url: '#' BN: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Hemiscyllium_ocellatum/sHemOce1/genomic_data/bionano/ + status: 4 + url: '#' HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Hemiscyllium_ocellatum/sHemOce1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Asterias_rubens/eAstRub1/genomic_data/dovetail/ Ilm: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Asterias_rubens/eAstRub1/genomic_data/illumina/ ONT: status: 4 url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Hemiscyllium_ocellatum/sHemOce1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Asterias_rubens/eAstRub1/genomic_data/pacbio/ trio: '' - vglId: sHemOce1 + vglId: eAstRub1 vgp_phase: phase1 -- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Falco_cherrug/bFalChe1/assembly_vgp_standard_2.0/ - class: Aves,birds - common_name: Saker falcon - family: Falconidae +- asm: '#' + class: Mammalia,mammals + common_name: false killer whale + family: Delphinidae hub: vgl - order: Falconiformes - scientific_name: Falco cherrug - status: 6-asm_curation - taxon_id: '345164' + order: Artiodactyla + scientific_name: Pseudorca crassidens + status: 2-data_progress + taxon_id: '82174' techs: 10X: status: 4 url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Falco_cherrug/bFalChe1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pseudorca_crassidens/mPseCra1/genomic_data/bionano/ HiC: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Falco_cherrug/bFalChe1/genomic_data/arima/ + status: 0 + url: '#' Ilm: status: 4 url: '#' @@ -7636,29 +7573,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Falco_cherrug/bFalChe1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pseudorca_crassidens/mPseCra1/genomic_data/pacbio/ trio: '' - vglId: bFalChe1 - vgp_phase: phase4 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_009762305.2 + vglId: mPseCra1 + vgp_phase: phase3 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_011762505.1 class: Mammalia,mammals - common_name: California sea lion - family: Otariidae + common_name: African grass rat + family: Muridae hub: vgl - order: Carnivora - scientific_name: Zalophus californianus + order: Rodentia + scientific_name: Arvicanthis niloticus status: 8-NCBI - taxon_id: '9704' + taxon_id: '61156' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Zalophus_californianus/mZalCal1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Arvicanthis_niloticus/mArvNil1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Zalophus_californianus/mZalCal1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Arvicanthis_niloticus/mArvNil1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Zalophus_californianus/mZalCal1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Arvicanthis_niloticus/mArvNil1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -7667,28 +7604,28 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Zalophus_californianus/mZalCal1/genomic_data/pacbio/ - trio: '' - vglId: mZalCal1 - vgp_phase: phase2 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Arvicanthis_niloticus/mArvNil1/genomic_data/pacbio/ + trio: mArvNil2/mArvNil3 + vglId: mArvNil1 + vgp_phase: phase3 - asm: '#' - class: Mammalia,mammals - common_name: Asiatic elephant - family: Elephantidae + class: Aves,birds + common_name: red-winged blackbird + family: Icteridae hub: vgl - order: Proboscidea - scientific_name: Elephas maximus - status: 2-data_progress - taxon_id: '9783' + order: Passeriformes + scientific_name: Agelaius phoeniceus + status: 1-DNA_isolation + taxon_id: '39638' techs: 10X: status: 4 url: '#' BN: - status: 1 + status: 0 url: '#' HiC: - status: 2 + status: 0 url: '#' Ilm: status: 4 @@ -7697,19 +7634,19 @@ toc: status: 4 url: '#' PB: - status: 2 + status: 0 url: '#' - vglId: mEleMax1 - vgp_phase: phase1 + vglId: bAgePho1 + vgp_phase: phase3 - asm: '#' class: Aves,birds - common_name: chipping sparrow - family: Passerellidae + common_name: Common canary + family: Fringillidae hub: vgl order: Passeriformes - scientific_name: Spizella passerina + scientific_name: Serinus canaria status: 0-data_queued - taxon_id: '40210' + taxon_id: '9135' techs: 10X: status: 4 @@ -7729,27 +7666,27 @@ toc: PB: status: 0 url: '#' - vglId: bSpiPas1 + vglId: bSerCaa1 vgp_phase: phase3 -- asm: '#' - class: Chondrichthyes,cartilaginous fishes - common_name: sharpnose sevengill shark - family: Hexanchidae +- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Diceros_bicornis/mDicBic1/assembly_curated/ + class: Mammalia,mammals + common_name: black rhinoceros + family: Rhinocerotidae hub: vgl - order: Hexanchiformes - scientific_name: Heptranchias perlo - status: 2-data_progress - taxon_id: '212740' + order: Perissodactyla + scientific_name: Diceros bicornis + status: 7-asm_curated + taxon_id: '9805' techs: 10X: status: 4 url: '#' BN: - status: 2 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Diceros_bicornis/mDicBic1/genomic_data/bionano/ HiC: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Diceros_bicornis/mDicBic1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -7757,60 +7694,61 @@ toc: status: 4 url: '#' PB: - status: 0 - url: '#' - vglId: sHepPer1 + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Diceros_bicornis/mDicBic1/genomic_data/pacbio/ + trio: mDicBic2/mDicBic3 + vglId: mDicBic1 vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_010909765.2 - class: Chondrichthyes,cartilaginous fishes - common_name: thorny skate - family: Rajidae +- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Erethizon_dorsatum/mEreDor1/assembly_vgp_standard_1.7/ + class: Mammalia,mammals + common_name: North American porcupine + family: Erethizontidae hub: vgl - order: Rajiformes - scientific_name: Amblyraja radiata - status: 8-NCBI - taxon_id: '386614' + order: Rodentia + scientific_name: Erethizon dorsatum + status: 6-asm_curation + taxon_id: '34844' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Amblyraja_radiata/sAmbRad1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Erethizon_dorsatum/mEreDor1/genomic_data/10x/ BN: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Amblyraja_radiata/sAmbRad1/genomic_data/bionano/ + status: 4 + url: '#' HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Amblyraja_radiata/sAmbRad1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Erethizon_dorsatum/mEreDor1/genomic_data/arima/ Ilm: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Amblyraja_radiata/sAmbRad1/genomic_data/illumina/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Erethizon_dorsatum/mEreDor1/genomic_data/illumina/ ONT: status: 4 url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Amblyraja_radiata/sAmbRad1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Erethizon_dorsatum/mEreDor1/genomic_data/pacbio/ trio: '' - vglId: sAmbRad1 + vglId: mEreDor1 vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_003369685.2 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_009829155.1 class: Mammalia,mammals - common_name: cattle - family: Bovidae - hub: others - order: Artiodactyla - scientific_name: Bos taurus + common_name: ermine + family: Mustelidae + hub: vgl + order: Carnivora + scientific_name: Mustela erminea status: 8-NCBI - taxon_id: '9913' + taxon_id: '36723' techs: 10X: status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Mustela_erminea/mMusErm1/genomic_data/10x/ BN: status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Mustela_erminea/mMusErm1/genomic_data/bionano/ HiC: status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Mustela_erminea/mMusErm1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -7819,28 +7757,28 @@ toc: url: '#' PB: status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Mustela_erminea/mMusErm1/genomic_data/pacbio/ trio: '' - vglId: mBosTau1 - vgp_phase: phase1 + vglId: mMusErm1 + vgp_phase: phase3 - asm: '#' - class: Mammalia,mammals - common_name: American pika - family: Ochotonidae + class: Amphibia,amphibians + common_name: Riggenbach's reed frog + family: Hyperoliidae hub: vgl - order: Lagomorpha - scientific_name: Ochotona princeps + order: Anura + scientific_name: Hyperolius riggenbachi status: 2-data_progress - taxon_id: '9978' + taxon_id: '752182' techs: 10X: status: 4 url: '#' BN: - status: 0 + status: 1 url: '#' HiC: - status: 0 + status: 2 url: '#' Ilm: status: 4 @@ -7849,29 +7787,30 @@ toc: status: 4 url: '#' PB: - status: 2 + status: 0 url: '#' - vglId: mOchPri1 + vglId: aHypRig1 vgp_phase: phase1 -- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pangasianodon_hypophthalmus/fPanHyp1/assembly_vgp_standard_2.1/ - class: Actinopterygii,Bony fishes - common_name: striped catfish - family: Pangasiidae - hub: others - order: Siluriformes - scientific_name: Pangasianodon hypophthalmus - status: 5-asm_done - taxon_id: '310915' +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_017976375.1 + class: Aves,birds + common_name: common cuckoo + family: Cuculidae + hub: vgl + order: Cuculiformes + scientific_name: Cuculus canorus + status: 8-NCBI + taxon_id: '55661' techs: 10X: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cuculus_canorus/bCucCan1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pangasianodon_hypophthalmus/fPanHyp1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cuculus_canorus/bCucCan1/genomic_data/bionano/ HiC: + link: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cuculus_canorus/bCucCan2/genomic_data/arima/ status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pangasianodon_hypophthalmus/fPanHyp1/genomic_data/arima/ + url: '#' Ilm: status: 4 url: '#' @@ -7880,60 +7819,91 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pangasianodon_hypophthalmus/fPanHyp1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cuculus_canorus/bCucCan1/genomic_data/pacbio/ trio: '' - vglId: fPanHyp1 - vgp_phase: phase2 -- asm: '#' - class: Chondrichthyes,cartilaginous fishes - common_name: gold dust stingray - family: Potamotrygonidae - hub: vgl - order: Myliobatiformes - scientific_name: Potamotrygon marinae - status: 4-asm_progress - taxon_id: '000000' + vglId: bCucCan1 + vgp_phase: phase1 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_910594005.1 + class: Mammalia,mammals + common_name: red deer + family: Cervidae + hub: others + order: Artiodactyla + scientific_name: Cervus elaphus + status: 8-NCBI + taxon_id: '9860' techs: 10X: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cervus_elaphus/mCerEla1/genomic_data/10x/ BN: status: 1 url: '#' HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Potamotrygon_marinae/sPotMar1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cervus_elaphus/mCerEla1/genomic_data/arima/ Ilm: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Potamotrygon_marinae/sPotMar1/genomic_data/illumina/ + url: '#' ONT: - status: 4 + status: 1 url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Potamotrygon_marinae/sPotMar1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cervus_elaphus/mCerEla1/genomic_data/pacbio/ trio: '' - vglId: sPotMar1 - vgp_phase: phase1 -- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Falco_peregrinus/bFalPer1/assembly_vgp_standard_2.0/ - class: Aves,birds - common_name: peregrine falcon - family: Falconidae - hub: vgl - order: Falconiformes - scientific_name: Falco peregrinus - status: 6-asm_curation - taxon_id: '8954' + vglId: mCerEla1 + vgp_phase: phase2 +- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Discoglossus_pictus/aDisPic1/assembly_vgp_standard_1.6/ + class: Amphibia,amphibians + common_name: painted frog + family: Alytidae + hub: others + order: Anura + scientific_name: Discoglossus pictus + status: 5-asm_done + taxon_id: '8351' techs: 10X: + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Discoglossus_pictus/aDisPic1/genomic_data/10x/ + BN: + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Discoglossus_pictus/aDisPic1/genomic_data/bionano/ + HiC: + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Discoglossus_pictus/aDisPic1/genomic_data/arima/ + Ilm: status: 4 url: '#' + ONT: + status: 4 + url: '#' + PB: + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Discoglossus_pictus/aDisPic1/genomic_data/pacbio/ + trio: '' + vglId: aDisPic1 + vgp_phase: phase1 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_014108235.1 + class: Mammalia,mammals + common_name: '' + family: Vespertilionidae + hub: others + order: Chiroptera + scientific_name: Myotis myotis + status: 8-NCBI + taxon_id: '51298' + techs: + 10X: + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Myotis_myotis/mMyoMyo1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Falco_peregrinus/bFalPer1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Myotis_myotis/mMyoMyo1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Falco_peregrinus/bFalPer1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Myotis_myotis/mMyoMyo1/genomic_data/phase/ Ilm: status: 4 url: '#' @@ -7942,60 +7912,91 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Falco_peregrinus/bFalPer1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Myotis_myotis/mMyoMyo1/genomic_data/pacbio/ trio: '' - vglId: bFalPer1 - vgp_phase: phase4 -- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Harpia_harpyja/bHarHar1/assembly_vgp_standard_2.0/ - class: Aves,birds - common_name: Harpy eagle - family: Accipitridae + vglId: mMyoMyo1 + vgp_phase: phase3 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_900700375.2 + class: Actinopterygii,Bony fishes + common_name: denticle herring + family: Denticipitidae hub: vgl - order: Falconiformes - scientific_name: Harpia harpyja - status: 6-asm_curation - taxon_id: '202280' + order: Clupeiformes + scientific_name: Denticeps clupeoides + status: 8-NCBI + taxon_id: '299321' techs: 10X: + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Denticeps_clupeoides/fDenClu1/genomic_data/10x/ + BN: + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Denticeps_clupeoides/fDenClu1/genomic_data/bionano/ + HiC: + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Denticeps_clupeoides/fDenClu1/genomic_data/arima/ + Ilm: + status: 4 + url: '#' + ONT: status: 4 url: '#' - BN: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Harpia_harpyja/bHarHar1/genomic_data/bionano/ + PB: + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Denticeps_clupeoides/fDenClu1/genomic_data/pacbio/ + trio: '' + vglId: fDenClu1 + vgp_phase: phase1 +- asm: '#' + class: Actinopterygii,Bony fishes + common_name: stoplight loosejaw + family: Stomiidae + hub: others + order: Stomiiformes + scientific_name: Malacosteus niger + status: 2-data_progress + taxon_id: '76143' + techs: + 10X: + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Malacosteus_niger/fMalNig1/genomic_data/10x/ + BN: + status: 0 + url: '#' HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Harpia_harpyja/bHarHar1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Malacosteus_niger/fMalNig1/genomic_data/arima/ Ilm: - status: 4 + status: 0 url: '#' ONT: - status: 4 + status: 0 url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Harpia_harpyja/bHarHar1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Malacosteus_niger/fMalNig1/genomic_data/pacbio/ trio: '' - vglId: bHarHar1 - vgp_phase: phase3 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_008658365.1 + vglId: fMalNig1 + vgp_phase: phase2 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_017639655.2 class: Aves,birds - common_name: razorbill - family: Alcidae + common_name: lesser kestrel + family: Falconidae hub: vgl - order: Charadriiformes - scientific_name: Alca torda + order: Falconiformes + scientific_name: Falco naumanni status: 8-NCBI - taxon_id: '28689' + taxon_id: '148594' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Alca_torda/bAlcTor1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Falco_naumanni/bFalNau1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Alca_torda/bAlcTor1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Falco_naumanni/bFalNau1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Alca_torda/bAlcTor1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Falco_naumanni/bFalNau1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -8004,29 +8005,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Alca_torda/bAlcTor1/genomic_data/pacbio/ - trio: '' - vglId: bAlcTor1 - vgp_phase: phase2 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_009769535.1 - class: Reptilia,reptiles - common_name: Western terrestrial garter snake - family: Colubridae + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Falco_naumanni/bFalNau1/genomic_data/pacbio/ + trio: bFalNau2/bFalNau3 + vglId: bFalNau1 + vgp_phase: phase4 +- asm: '#' + class: Mammalia,mammals + common_name: Blainville's beaked whale + family: Ziphiidae hub: vgl - order: Squamata - scientific_name: Thamnophis elegans - status: 8-NCBI - taxon_id: '35005' + order: Artiodactyla + scientific_name: Mesoplodon densirostris + status: 3-data_done + taxon_id: '48708' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Thamnophis_elegans/rThaEle1/genomic_data/10x/ + status: 4 + url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Thamnophis_elegans/rThaEle1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Mesoplodon_densirostris/mMesDen1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Thamnophis_elegans/rThaEle1/genomic_data/dovetail/ + url: '#' Ilm: status: 4 url: '#' @@ -8035,29 +8036,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Thamnophis_elegans/rThaEle1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Mesoplodon_densirostris/mMesDen1/genomic_data/pacbio/ trio: '' - vglId: rThaEle1 - vgp_phase: phase1 -- asm: '#' - class: Chondrichthyes,cartilaginous fishes - common_name: horn shark - family: Heterodontidae + vglId: mMesDen1 + vgp_phase: phase2 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_007474595.2 + class: Mammalia,mammals + common_name: Canada lynx + family: Felidae hub: vgl - order: Heterodontiformes - scientific_name: Heterodontus francisci - status: 2-data_progress - taxon_id: '7792' + order: Carnivora + scientific_name: Lynx canadensis + status: 8-NCBI + taxon_id: '61383' techs: 10X: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lynx_canadensis/mLynCan4/genomic_data/10x/ BN: status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lynx_canadensis/mLynCan4/genomic_data/bionano/ HiC: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lynx_canadensis/mLynCan4/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -8065,29 +8066,30 @@ toc: status: 4 url: '#' PB: - status: 0 - url: '#' - vglId: sHetFra1 + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lynx_canadensis/mLynCan4/genomic_data/pacbio/ + trio: '' + vglId: mLynCan4 vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_011004845.1 - class: Actinopterygii,Bony fishes - common_name: northern pike - family: Esocidae +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_905319845.1 + class: Mammalia,mammals + common_name: Greenland wolf + family: Canidae hub: others - order: Esociformes - scientific_name: Esox lucius + order: Carnivora + scientific_name: Canis lupus orion status: 8-NCBI - taxon_id: '8010' + taxon_id: '2605939' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Esox_lucius/fEsoLuc1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Canis_lupus_orion/mCanLor1/genomic_data/10x/ BN: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Esox_lucius/fEsoLuc1/genomic_data/bionano/ + status: 4 + url: '#' HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Esox_lucius/fEsoLuc1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Canis_lupus_orion/mCanLor1/genomic_data/dovetail/ Ilm: status: 4 url: '#' @@ -8096,29 +8098,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Esox_lucius/fEsoLuc1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Canis_lupus_orion/mCanLor1/genomic_data/pacbio/ trio: '' - vglId: fEsoLuc1 - vgp_phase: phase1 + vglId: mCanLor1 + vgp_phase: phase2 - asm: '#' - class: Aves,birds - common_name: Savannah sparrow - family: Passerellidae + class: Actinopterygii,Bony fishes + common_name: midwater eelpout + family: Zoarcidae hub: vgl - order: Passeriformes - scientific_name: Passerculus sandwichensis + order: Perciformes + scientific_name: Melanostigma pammelas status: 2-data_progress - taxon_id: '161624' + taxon_id: '557412' techs: 10X: status: 4 url: '#' BN: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Passerculus_sandwichensis/bPasSan1/genomic_data/bionano/ + status: 0 + url: '#' HiC: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Passerculus_sandwichensis/bPasSan1/genomic_data/arima/ + status: 0 + url: '#' Ilm: status: 4 url: '#' @@ -8126,30 +8128,29 @@ toc: status: 4 url: '#' PB: - status: 2 + status: 1 url: '#' - trio: '' - vglId: bPasSan1 - vgp_phase: phase3 -- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Discoglossus_pictus/aDisPic1/assembly_vgp_standard_1.6/ - class: Amphibia,amphibians - common_name: painted frog - family: Alytidae - hub: others - order: Anura - scientific_name: Discoglossus pictus - status: 5-asm_done - taxon_id: '8351' + vglId: fMelPam1 + vgp_phase: phase2 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_015220235.1 + class: Mammalia,mammals + common_name: southern two-toed sloth + family: Megalonychidae + hub: vgl + order: Folivora + scientific_name: Choloepus didactylus + status: 8-NCBI + taxon_id: '27675' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Discoglossus_pictus/aDisPic1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Choloepus_didactylus/mChoDid1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Discoglossus_pictus/aDisPic1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Choloepus_didactylus/mChoDid1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Discoglossus_pictus/aDisPic1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Choloepus_didactylus/mChoDid1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -8158,28 +8159,28 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Discoglossus_pictus/aDisPic1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Choloepus_didactylus/mChoDid1/genomic_data/pacbio/ trio: '' - vglId: aDisPic1 + vglId: mChoDid1 vgp_phase: phase1 - asm: '#' - class: Actinopterygii,Bony fishes - common_name: Adriatic sturgeon - family: Acipenseridae + class: Amphibia,amphibians + common_name: Puerto Rican coqui + family: Eleutherodactylidae hub: vgl - order: Acipenseriformes - scientific_name: Acipenser naccarii + order: Anura + scientific_name: Eleutherodactylus coqui status: 2-data_progress - taxon_id: '42330' + taxon_id: '57060' techs: 10X: status: 4 url: '#' BN: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Acipenser_naccarii/fAciNac1/genomic_data/bionano/ + status: 2 + url: '#' HiC: - status: 1 + status: 0 url: '#' Ilm: status: 4 @@ -8190,28 +8191,27 @@ toc: PB: status: 0 url: '#' - trio: '' - vglId: fAciNac1 - vgp_phase: phase4 -- asm: '#' - class: Mammalia,mammals - common_name: Clouded leopard - family: Felidae - hub: vgl - order: Carnivora - scientific_name: Neofelis nebulosa - status: 2-data_progress - taxon_id: '61452' + vglId: aEleCoq1 + vgp_phase: phase1 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_900246225.5 + class: Actinopterygii,Bony fishes + common_name: eastern happy + family: Cichlidae + hub: others + order: Cichliformes + scientific_name: Astatotilapia calliptera + status: 8-NCBI + taxon_id: '8154' techs: 10X: - status: 4 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Astatotilapia_calliptera/fAstCal1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Neofelis_nebulosa/mNeoNeb1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Astatotilapia_calliptera/fAstCal1/genomic_data/bionano/ HiC: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Neofelis_nebulosa/mNeoNeb1/genomic_data/arima/ + status: 4 + url: '#' Ilm: status: 4 url: '#' @@ -8219,30 +8219,30 @@ toc: status: 4 url: '#' PB: - status: 2 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Astatotilapia_calliptera/fAstCal1/genomic_data/pacbio/ trio: '' - vglId: mNeoNeb1 + vglId: fAstCal1 vgp_phase: phase3 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_009819535.1 - class: Reptilia,reptiles - common_name: sand lizard - family: Lacertidae - hub: vgl - order: Squamata - scientific_name: Lacerta agilis +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_019393635.1 + class: Mammalia,mammals + common_name: monito del monte + family: Microbiotheriidae + hub: others + order: Microbiotheria + scientific_name: Dromiciops gliroides status: 8-NCBI - taxon_id: '80427' + taxon_id: '33562' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lacerta_agilis/rLacAgi1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dromiciops_gliroides/mDroGli1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lacerta_agilis/rLacAgi1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dromiciops_gliroides/mDroGli1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lacerta_agilis/rLacAgi1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dromiciops_gliroides/mDroGli1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -8251,29 +8251,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lacerta_agilis/rLacAgi1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Dromiciops_gliroides/mDroGli1/genomic_data/pacbio/ trio: '' - vglId: rLacAgi1 + vglId: mDroGli1 vgp_phase: phase1 - asm: '#' - class: Aves,birds - common_name: kagu - family: Rhynochetidae + class: Reptilia,reptiles + common_name: European pond turtle + family: Emydidae hub: vgl - order: Gruiformes - scientific_name: Rhynochetos jubatus - status: 2-data_progress - taxon_id: '54386' + order: Testudines + scientific_name: Emys orbicularis + status: 3-data_done + taxon_id: '82168' techs: 10X: status: 4 url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Rhynochetos_jubatus/bRhyJub1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Emys_orbicularis/rEmyOrb1/genomic_data/bionano/ HiC: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Emys_orbicularis/rEmyOrb1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -8281,30 +8281,30 @@ toc: status: 4 url: '#' PB: - status: 0 - url: '#' + status: 1 + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Emys_orbicularis/rEmyOrb1/genomic_data/pacbio/ trio: '' - vglId: bRhyJub1 - vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_007364275.1 - class: Actinopterygii,Bony fishes - common_name: flier cichlid - family: Cichlidae - hub: vgl - order: Cichliformes - scientific_name: Archocentrus centrarchus - status: 8-NCBI - taxon_id: '63155' + vglId: rEmyOrb1 + vgp_phase: phase3 +- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Heterohyrax_brucei/mHetBru1/assembly_vgp_standard_2.1/ + class: Mammalia,mammals + common_name: yellow-spotted hyrax + family: Procaviidae + hub: others + order: Hyracoidea + scientific_name: Heterohyrax brucei + status: 5-asm_done + taxon_id: '77598' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Archocentrus_centrarchus/fArcCen1/genomic_data/10x/ + status: 4 + url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Archocentrus_centrarchus/fArcCen1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Heterohyrax_brucei/mHetBru1/genomic_data/bionano/ HiC: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Archocentrus_centrarchus/fArcCen1/genomic_data/phase/ + status: 4 + url: '#' Ilm: status: 4 url: '#' @@ -8313,29 +8313,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Archocentrus_centrarchus/fArcCen1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Heterohyrax_brucei/mHetBru1/genomic_data/pacbio/ trio: '' - vglId: fArcCen1 + vglId: mHetBru1 vgp_phase: phase1 -- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Suncus_etruscus/mSunEtr1/assembly_vgp_standard_1.7/ - class: Mammalia,mammals - common_name: white-toothed pygmy shrew - family: Soricidae +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_009829125.1 + class: Actinopterygii,Bony fishes + common_name: Korean giant-fin mudskipper + family: Gobiidae hub: vgl - order: Eulipotyphla - scientific_name: Suncus etruscus - status: 6-asm_curation - taxon_id: '109475' + order: Gobiiformes + scientific_name: Periophthalmus magnuspinnatus + status: 8-NCBI + taxon_id: '409849' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Suncus_etruscus/mSunEtr1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Periophthalmus_magnuspinnatus/fPerMag1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Suncus_etruscus/mSunEtr1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Periophthalmus_magnuspinnatus/fPerMag1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Suncus_etruscus/mSunEtr1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Periophthalmus_magnuspinnatus/fPerMag1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -8344,29 +8344,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Suncus_etruscus/mSunEtr1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Periophthalmus_magnuspinnatus/fPerMag1/genomic_data/pacbio/ trio: '' - vglId: mSunEtr1 - vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCA_901001165.2 - class: Actinopterygii,Bony fishes - common_name: river trout - family: Salmonidae + vglId: fPerMag1 + vgp_phase: phase2 +- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Harpia_harpyja/bHarHar1/assembly_vgp_standard_2.0/ + class: Aves,birds + common_name: Harpy eagle + family: Accipitridae hub: vgl - order: Salmoniformes - scientific_name: Salmo trutta - status: 8-NCBI - taxon_id: '8032' + order: Falconiformes + scientific_name: Harpia harpyja + status: 6-asm_curation + taxon_id: '202280' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Salmo_trutta/fSalTru1/genomic_data/10x/ + status: 4 + url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Salmo_trutta/fSalTru1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Harpia_harpyja/bHarHar1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Salmo_trutta/fSalTru1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Harpia_harpyja/bHarHar1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -8375,29 +8375,29 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Salmo_trutta/fSalTru1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Harpia_harpyja/bHarHar1/genomic_data/pacbio/ trio: '' - vglId: fSalTru1 - vgp_phase: phase1 -- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Tamandua_tetradactyla/mTamTet1/assembly_vgp_standard_1.7/ - class: Mammalia,mammals - common_name: southern tamandua - family: Myrmecophagidae - hub: others - order: Pilosa - scientific_name: Tamandua tetradactyla - status: 5-asm_done - taxon_id: '48850' + vglId: bHarHar1 + vgp_phase: phase3 +- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Falco_cherrug/bFalChe1/assembly_vgp_standard_2.0/ + class: Aves,birds + common_name: Saker falcon + family: Falconidae + hub: vgl + order: Falconiformes + scientific_name: Falco cherrug + status: 6-asm_curation + taxon_id: '345164' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Tamandua_tetradactyla/mTamTet1/genomic_data/10x/ + status: 4 + url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Tamandua_tetradactyla/mTamTet1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Falco_cherrug/bFalChe1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Tamandua_tetradactyla/mTamTet1/genomic_data/hic/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Falco_cherrug/bFalChe1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -8406,60 +8406,60 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Tamandua_tetradactyla/mTamTet1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Falco_cherrug/bFalChe1/genomic_data/pacbio/ trio: '' - vglId: mTamTet1 - vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_910594005.1 - class: Mammalia,mammals - common_name: red deer - family: Cervidae + vglId: bFalChe1 + vgp_phase: phase4 +- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_902500255.1 + class: Actinopterygii,Bony fishes + common_name: prehistoric monster fish + family: Batrachoididae hub: others - order: Artiodactyla - scientific_name: Cervus elaphus + order: Batrachoidiformes + scientific_name: Thalassophryne amazonica status: 8-NCBI - taxon_id: '9860' + taxon_id: '390379' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cervus_elaphus/mCerEla1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Thalassophryne_amazonica/fThaAma1/genomic_data/10x/ BN: status: 1 - url: '#' + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Thalassophryne_amazonica/fThaAma1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cervus_elaphus/mCerEla1/genomic_data/arima/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Thalassophryne_amazonica/fThaAma1/genomic_data/dovetail/ Ilm: - status: 1 + status: 4 url: '#' ONT: - status: 1 + status: 4 url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Cervus_elaphus/mCerEla1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Thalassophryne_amazonica/fThaAma1/genomic_data/pacbio/ trio: '' - vglId: mCerEla1 - vgp_phase: phase2 -- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lemur_catta/mLemCat1/assembly_curated/ - class: Mammalia,mammals - common_name: Ring-tailed lemur - family: Lemuridae + vglId: fThaAma1 + vgp_phase: phase1 +- asm: '#' + class: Aves,birds + common_name: Kauai elepaio + family: Monarchidae hub: vgl - order: Lemuriformes - scientific_name: Lemur catta - status: 7-asm_curated - taxon_id: '9447' + order: Passeriformes + scientific_name: Chasiempis sclateri + status: 2-data_progress + taxon_id: '1576535' techs: 10X: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lemur_catta/mLemCat1/genomic_data/10x/ + status: 4 + url: '#' BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lemur_catta/mLemCat1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Chasiempis_sclateri/bChaScl1/genomic_data/bionano/ HiC: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lemur_catta/mLemCat1/genomic_data/arima/ + status: 3 + url: '#' Ilm: status: 4 url: '#' @@ -8467,30 +8467,30 @@ toc: status: 4 url: '#' PB: - status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Lemur_catta/mLemCat1/genomic_data/pacbio/ + status: 0 + url: '#' trio: '' - vglId: mLemCat1 - vgp_phase: phase1 -- asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_013358815.1 - class: Actinopterygii,Bony fishes - common_name: electric eel - family: Gymnotidae - hub: others - order: Gymnotiformes - scientific_name: Electrophorus electricus - status: 8-NCBI - taxon_id: '8005' + vglId: bChaScl1 + vgp_phase: phase2 +- asm: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Hemiprocne_comata/bHemCom1/assembly_curated/ + class: Aves,birds + common_name: whiskered treeswift + family: Apodidae + hub: vgl + order: Apodiformes + scientific_name: Hemiprocne comata + status: 7-asm_curated + taxon_id: '243314' techs: 10X: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Electrophorus_electricus/fEleEle1/genomic_data/10x/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Hemiprocne_comata/bHemCom1/genomic_data/10x/ BN: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Electrophorus_electricus/fEleEle1/genomic_data/bionano/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Hemiprocne_comata/bHemCom1/genomic_data/bionano/ HiC: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Electrophorus_electricus/fEleEle1/genomic_data/hic/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Hemiprocne_comata/bHemCom1/genomic_data/arima/ Ilm: status: 4 url: '#' @@ -8499,9 +8499,9 @@ toc: url: '#' PB: status: 1 - url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Electrophorus_electricus/fEleEle1/genomic_data/pacbio/ + url: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Hemiprocne_comata/bHemCom1/genomic_data/pacbio/ trio: '' - vglId: fEleEle1 + vglId: bHemCom1 vgp_phase: phase1 - asm: https://www.ncbi.nlm.nih.gov/assembly/GCF_914725855.1 class: Actinopterygii,Bony fishes