Skip to content

Releases: veg/hyphy

2.5.9

21 Apr 12:00
@spond spond
2.5.9
466f29f
This commit was created on GitHub.com and signed with GitHub’s verified signature. The key has expired.
GPG key ID: 4AEE18F83AFDEB23
Expired
Learn about vigilant mode.
Compare
Choose a tag to compare
2.5.9

Bug fixes and improvements
added MH support for aBSREL
added state imputation for PRIME
zero-branch length squashing for standard selection analyses

Assets 2
Loading

2.5.8

24 Mar 23:22
@spond spond
2.5.8
933d4f4
This commit was created on GitHub.com and signed with GitHub’s verified signature. The key has expired.
GPG key ID: 4AEE18F83AFDEB23
Expired
Learn about vigilant mode.
Compare
Choose a tag to compare
2.5.8

Adding PRIME, minor enchacements

Assets 2
Loading

2.5.7

19 Mar 03:11
@spond spond
2.5.7
3f9f3e9
Compare
Choose a tag to compare
2.5.7

-- Fixing pesky optimizer boundary cases
-- Fixing a serious memory bloat issue in MPI-enabled analyses, esp GARD
-- Basic Iterators in HBL
-- Improvements to some optimization settings

Assets 2
Loading

2.5.6

14 Mar 13:01
@spond spond
2.5.6
a1b28dd
This commit was created on GitHub.com and signed with GitHub’s verified signature. The key has expired.
GPG key ID: 4AEE18F83AFDEB23
Expired
Learn about vigilant mode.
Compare
Choose a tag to compare
2.5.6

Better testing, fixes for bugs in MEME and RELAX in 2.5.5

Assets 2
Loading

2.5.5

29 Feb 16:11
@spond spond
2.5.5
0e4c12a
This commit was created on GitHub.com and signed with GitHub’s verified signature. The key has expired.
GPG key ID: 4AEE18F83AFDEB23
Expired
Learn about vigilant mode.
Compare
Choose a tag to compare
2.5.5

THIS RELEASE IS BUGGY

Do not use for MEME AND RELAX analyses.

Assets 2
Loading

2.5.4

20 Feb 15:22
@spond spond
2.5.4
5228300
This commit was created on GitHub.com and signed with GitHub’s verified signature. The key has expired.
GPG key ID: 4AEE18F83AFDEB23
Expired
Learn about vigilant mode.
Compare
Choose a tag to compare
2.5.4

GARD fixes.

Assets 2
Loading

2.5.3

16 Feb 00:30
@spond spond
2.5.3
e86b950
This commit was created on GitHub.com and signed with GitHub’s verified signature. The key has expired.
GPG key ID: 4AEE18F83AFDEB23
Expired
Learn about vigilant mode.
Compare
Choose a tag to compare
2.5.3

GARD issue hot fix, prevent crash that could occur during error handling

Assets 2
Loading

2.5.2

06 Feb 15:46
@spond spond
2.5.2
fac1356
This commit was created on GitHub.com and signed with GitHub’s verified signature. The key has expired.
GPG key ID: 4AEE18F83AFDEB23
Expired
Learn about vigilant mode.
Compare
Choose a tag to compare
2.5.2

Incremental bug fixes, analysis updates.

Assets 2
Loading

2.5.1

22 Aug 17:15
@stevenweaver stevenweaver
2.5.1
558050e
This commit was created on GitHub.com and signed with GitHub’s verified signature. The key has expired.
GPG key ID: 4AEE18F83AFDEB23
Expired
Learn about vigilant mode.
Compare
Choose a tag to compare
2.5.1
  • Allows -DNOAVX=ON rule to work with Clang
Assets 2
Loading

2.5.0

31 May 17:10
@rdvelazquez rdvelazquez
2.5.0
9d7ac2d
This commit was created on GitHub.com and signed with GitHub’s verified signature. The key has expired.
GPG key ID: 4AEE18F83AFDEB23
Expired
Learn about vigilant mode.
Compare
Choose a tag to compare
2.5.0

Notable Changes:
Far to many to list here in detail but to name a few...

  • Completely re-engineered computational core and analysis library
  • New classes of evolutionary models and statistical tests
  • Dramatic performance and stability enhancements
  • Significant usability improvements including command line arguments and relative paths

Stay tuned for a release note describing the redesign in detail.

Assets 2
Loading