docker-latest.yml

name: Publish Docker image (latest)
on:
  workflow_dispatch:
  push:
    branches:
    # Default branches below
      - main
      - master
jobs:
  push_to_registries:
    name: Push Docker image to multiple registries
    runs-on: ubuntu-latest
    permissions:
      packages: write
      contents: read
    steps:
      -
        name: Checkout
        uses: actions/checkout@v3
        with:
          submodules: recursive
      -
        name: Set up QEMU
        uses: docker/setup-qemu-action@v2
      -
        name: Set up Docker Buildx
        uses: docker/setup-buildx-action@v2
      - name: Log in to Docker Hub
        uses: docker/login-action@v2
        with:
          username: ${{ secrets.DOCKERHUB_USERNAME }}
          password: ${{ secrets.DOCKERHUB_TOKEN }}
      - name: Log in to GitHub Docker Registry
        uses: docker/login-action@v2
        with:
          registry: ghcr.io
          username: ${{ github.repository_owner }}
          password: ${{ secrets.GITHUB_TOKEN }}
      -
        name: Build Docker
        uses: docker/build-push-action@v3
        with:
          context: .
          platforms: linux/amd64,linux/arm64
          push: true
          tags: ghcr.io/${{ github.repository_owner }}/vast-tools:latest
      - 
        name: Sleep for 30 seconds
        uses: whatnick/wait-action@master
        with:
          time: '30s'
      -
        name: Testing Docker image
        uses: addnab/docker-run-action@v3
        with:
          registry: ghcr.io
          username: ${{ github.repository_owner }}
          password: ${{ secrets.GITHUB_TOKEN }}
          image: ${{ github.repository_owner }}/vast-tools:latest
          options: -v ${{ github.workspace }}/db:/VASTDB -v ${{ github.workspace }}/share:/share -v ${{ github.workspace }}/tests:/tests
          run: |
            echo "Download DB"
            cd /VASTDB
            curl --silent --remote-name https://vastdb.crg.eu/libs/vastdb.hsa.16.02.18.tar.gz
            tar zxf vastdb.hsa.16.02.18.tar.gz
            rm vastdb.hsa.16.02.18.tar.gz
            echo "Running test"
            mkdir -p /share/reads
            mkdir -p /share/out
            cp /tests/data/NewFQ_Test_Hsa-51/NewFQ_Test_Hsa-51.fq.gz /share/reads
            vast-tools align /share/reads/NewFQ_Test_Hsa-51.fq.gz -sp Hsa --expr -o /share/out/test
            bash /tests/tests.sh /tests/data /share/out/test
      -
        name: Push Docker
        uses: docker/build-push-action@v3
        with:
          context: .
          platforms: linux/amd64,linux/arm64
          push: true
          tags: |
            ${{ secrets.DOCKERHUB_ACCOUNT }}/vast-tools:latest
            ghcr.io/${{ github.repository_owner }}/vast-tools:latest