Article-4

Cardiac-Structure-Database

Material for the article "Cardiac structure discontinuities revealed by ex-vivo microstructural characterization. A focus on the basal inferoseptal left ventricle region" have been uploaded on the zenodo platform. The link is indicated at the bottom of this page.

Additionnal materials including data and codes for dwi and tractography processing.

If you use the data, please cite:

Data associated with the article can be accessed at this link :

Environnement

ANTs and MRtrix are mandatory dependencies.

OS version

Ubuntu 20.04.2 LTS

MRtrix version

== mrconvert 3.0.2-108-g6844eb03 == 64 bit release version, built Jun 9 2021, using Eigen 3.3.7 Author(s): J-Donald Tournier ([email protected]) and Robert E. Smith ([email protected]) Copyright (c) 2008-2021 the MRtrix3 contributors.

ANTs version

ANTs Version: 2.3.5.dev212-g44225 Compiled: Feb 4 2021 11:20:35

Code

A code for the computation of the diffusion tensor metric and streamlines is available. The code is subject to change at any moment. As an example, the code automatically produces the following figures. Sample S1 has been re-tested, other should work the same.

Figures

Human Sample 1 in LA Aligned space

Human Sample 2 in LA Aligned space

Human Sample 3 in LA Aligned space

Human Sample 4 in LA Aligned space

Human Sample 5 in LA Aligned space

Sample 1 in LA space

Sample 2 in LA space

Sample 3 in LA space

Sample 4 in LA space

Sample 5 in LA space

Data folder

The data are available on the Zenodo Platform.

• v0.1 Initial Push

Data Hierarchy

├── Human
│   ├── 1
│   ├── 2
│   ├── 3
│   ├── 4
│   └── 5
└── Sheep
    ├── 1
    ├── 2
    ├── 3
    ├── 4
    └── 5

File Hierarchy

.
├── 1
│   ├── cube-Segment_1-label.nii.gz
│   ├── grad.b
│   ├── mask_mean_b0.nii.gz
│   ├── mean_b0_RVIP.nii.gz
│   ├── tensor_RVIP.nii.gz
│   └── transform_itk_to_LA.txt