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pom.xml
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pom.xml
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<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<groupId>gov.nist.isg</groupId>
<artifactId>MIST_</artifactId>
<version>2.1</version>
<packaging>jar</packaging>
<build>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-shade-plugin</artifactId>
<version>3.5.0</version>
<executions>
<execution>
<goals>
<goal>shade</goal>
</goals>
<configuration>
<shadedArtifactAttached>true</shadedArtifactAttached>
<transformers>
<transformer implementation=
"org.apache.maven.plugins.shade.resource.ManifestResourceTransformer">
<mainClass>gov.nist.isg.mist.MISTMain</mainClass>
</transformer>
</transformers>
</configuration>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-compiler-plugin</artifactId>
<version>3.1</version>
<configuration>
<source>1.7</source>
<target>1.7</target>
</configuration>
<executions>
<execution>
<configuration>
<manifest>
<mainClass>
gov.nist.isg.mist.MISTMain
</mainClass>
</manifest>
</configuration>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-assembly-plugin</artifactId>
<executions>
<execution>
<phase>package</phase>
<goals>
<goal>single</goal>
</goals>
</execution>
</executions>
<configuration>
<archive>
<manifest>
<addClasspath>true</addClasspath>
<classpathPrefix>src/</classpathPrefix>
<mainClass>gov.nist.isg.mist.MISTMain</mainClass>
</manifest>
</archive>
<descriptorRefs>
<descriptorRef>jar-with-dependencies</descriptorRef>
</descriptorRefs>
</configuration>
</plugin>
</plugins>
<!--<outputDirectory>${project.build.directory}/maven-results/</outputDirectory>-->
</build>
<repositories>
<repository>
<id>scijava.public</id>
<url>https://maven.scijava.org/content/groups/public</url>
</repository>
<repository>
<id>imagej.public</id>
<url>http://maven.imagej.net/content/groups/public</url>
</repository>
<repository>
<id>mist.in-project</id>
<name>In Project Repo</name>
<url>file://${project.basedir}/java_libs</url>
</repository>
<repository>
<id>ome.snapshots</id>
<url>http://artifacts.openmicroscopy.org/artifactory/ome.snapshots</url>
</repository>
</repositories>
<dependencies>
<dependency>
<groupId>net.imagej</groupId>
<artifactId>ij</artifactId>
<version>1.51d</version>
</dependency>
<dependency>
<groupId>com.nativelibs4java</groupId>
<artifactId>bridj</artifactId>
<version>0.6.2</version>
</dependency>
<dependency>
<groupId>org.jcuda</groupId>
<artifactId>jcuda</artifactId>
<version>0.9.0d</version>
<!--<version>6.5</version>-->
<!--<version>0.8.0</version>-->
</dependency>
<dependency>
<groupId>org.jcuda</groupId>
<artifactId>jcufft</artifactId>
<version>0.9.0d</version>
<!--<version>6.5</version>-->
<!--<version>0.8.0</version>-->
</dependency>
<dependency>
<groupId>edu.mines</groupId>
<artifactId>mines-jtk</artifactId>
<version>20100113</version>
</dependency>
<dependency>
<groupId>ome</groupId>
<artifactId>formats-bsd</artifactId>
<version>6.6.1</version>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>ome</groupId>
<artifactId>bio-formats_plugins</artifactId>
<version>6.6.1</version>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>commons-cli</groupId>
<artifactId>commons-cli</artifactId>
<version>1.4</version>
</dependency>
<dependency>
<groupId>io.scif</groupId>
<artifactId>scifio</artifactId>
<version>0.24.0</version>
</dependency>
</dependencies>
</project>