From 54b2e1891e305235af3c33d9edbc281680d89ea2 Mon Sep 17 00:00:00 2001 From: Andrea Bollini Date: Sun, 8 Sep 2024 14:31:01 +0200 Subject: [PATCH 01/35] DSC-1848 merge dspace 8.0 tag --- .github/workflows/build.yml | 15 +- .github/workflows/codescan.yml | 4 +- .github/workflows/docker.yml | 355 +------- .github/workflows/issue_opened.yml | 2 +- .github/workflows/reusable-docker-build.yml | 26 +- .lgtm.yml | 9 - Dockerfile | 31 +- Dockerfile.cli | 19 +- Dockerfile.dependencies | 8 +- Dockerfile.test | 39 +- LICENSES_THIRD_PARTY | 794 ++++++++++-------- docker-compose-cli.yml | 1 - docker-compose.yml | 9 +- dspace-api/pom.xml | 164 ++-- .../org/dspace/alerts/SystemWideAlert.java | 20 +- .../dao/impl/SystemWideAlertDAOImpl.java | 6 +- .../dspace/app/bulkedit/MetadataImport.java | 12 +- .../app/itemexport/ItemExportServiceImpl.java | 2 +- .../itemexport/service/ItemExportService.java | 2 +- .../app/itemimport/ItemImportServiceImpl.java | 99 +-- .../itemimport/service/ItemImportService.java | 2 +- .../itemupdate/DeleteBitstreamsAction.java | 13 +- .../dspace/app/ldn/LDNMessageConsumer.java | 12 + .../org/dspace/app/ldn/LDNMessageEntity.java | 18 +- .../app/ldn/NotifyPatternToTrigger.java | 19 +- .../dspace/app/ldn/NotifyServiceEntity.java | 16 +- .../app/ldn/NotifyServiceInboundPattern.java | 19 +- .../action/LDNRelationCorrectionAction.java | 8 +- .../app/ldn/action/SendLDNMessageAction.java | 2 +- .../app/ldn/dao/impl/LDNMessageDaoImpl.java | 10 +- .../impl/NotifyPatternToTriggerDaoImpl.java | 6 +- .../ldn/dao/impl/NotifyServiceDaoImpl.java | 8 +- .../NotifyServiceInboundPatternDaoImpl.java | 6 +- .../org/dspace/app/ldn/model/Citation.java | 2 +- .../ldn/processor/LDNMetadataProcessor.java | 90 +- .../app/ldn/service/LDNMessageService.java | 10 +- .../dspace/app/ldn/service/NotifyService.java | 3 +- .../service/impl/LDNMessageServiceImpl.java | 182 ++-- .../ldn/service/impl/NotifyServiceImpl.java | 3 +- .../dspace/app/requestitem/RequestItem.java | 24 +- .../requestitem/RequestItemEmailNotifier.java | 8 +- .../dao/impl/RequestItemDAOImpl.java | 16 +- .../org/dspace/app/sherpa/SHERPAService.java | 4 +- .../SolrDatabaseResyncCli.java | 70 +- .../app/suggestion/SuggestionServiceImpl.java | 2 +- .../org/dspace/app/util/AuthorizeUtil.java | 2 +- .../java/org/dspace/app/util/DCInput.java | 2 +- .../app/util/DSpaceContextListener.java | 4 +- .../dspace/app/util/DSpaceWebappListener.java | 5 +- .../app/util/OpenSearchServiceImpl.java | 2 +- .../app/util/SubmissionConfigReader.java | 21 +- .../dspace/app/util/SubmissionStepConfig.java | 2 +- .../org/dspace/app/util/SyndicationFeed.java | 19 +- .../main/java/org/dspace/app/util/Util.java | 2 +- .../main/java/org/dspace/app/util/WebApp.java | 18 +- .../authenticate/AuthenticationMethod.java | 4 +- .../AuthenticationServiceImpl.java | 2 +- .../dspace/authenticate/IPAuthentication.java | 4 +- .../authenticate/LDAPAuthentication.java | 4 +- .../authenticate/OidcAuthentication.java | 4 +- .../authenticate/OidcAuthenticationBean.java | 4 +- .../authenticate/OrcidAuthentication.java | 4 +- .../authenticate/OrcidAuthenticationBean.java | 4 +- .../authenticate/PasswordAuthentication.java | 4 +- .../authenticate/ShibAuthentication.java | 4 +- .../authenticate/X509Authentication.java | 8 +- .../oidc/impl/OidcClientImpl.java | 2 +- .../service/AuthenticationService.java | 2 +- .../authority/AuthoritySolrServiceImpl.java | 4 +- .../authorize/AuthorizeServiceImpl.java | 10 +- .../dspace/authorize/FixDefaultPolicies.java | 3 +- .../java/org/dspace/authorize/PolicySet.java | 9 +- .../org/dspace/authorize/ResourcePolicy.java | 35 +- .../authorize/ResourcePolicyServiceImpl.java | 16 +- .../dao/impl/ResourcePolicyDAOImpl.java | 58 +- .../service/ResourcePolicyService.java | 30 +- .../java/org/dspace/browse/ItemCountDAO.java | 13 +- .../dspace/browse/ItemCountDAOFactory.java | 67 -- .../org/dspace/browse/ItemCountDAOSolr.java | 59 +- .../org/dspace/browse/ItemCountException.java | 32 - .../java/org/dspace/browse/ItemCounter.java | 87 +- .../org/dspace/checker/ChecksumHistory.java | 24 +- .../org/dspace/checker/ChecksumResult.java | 13 +- .../dspace/checker/DailyReportEmailer.java | 4 +- .../dspace/checker/MostRecentChecksum.java | 18 +- .../dao/impl/ChecksumHistoryDAOImpl.java | 4 +- .../dao/impl/ChecksumResultDAOImpl.java | 6 +- .../dao/impl/MostRecentChecksumDAOImpl.java | 14 +- .../java/org/dspace/content/Bitstream.java | 20 +- .../org/dspace/content/BitstreamFormat.java | 35 +- .../dspace/content/BitstreamServiceImpl.java | 2 +- .../main/java/org/dspace/content/Bundle.java | 22 +- .../dspace/content/CacheableDSpaceObject.java | 20 + .../java/org/dspace/content/Collection.java | 45 +- .../dspace/content/CollectionServiceImpl.java | 10 +- .../java/org/dspace/content/Community.java | 43 +- .../dspace/content/CommunityServiceImpl.java | 9 +- .../main/java/org/dspace/content/DCDate.java | 7 + .../java/org/dspace/content/DSpaceObject.java | 24 +- .../content/DSpaceObjectServiceImpl.java | 36 +- .../org/dspace/content/EntityServiceImpl.java | 29 +- .../java/org/dspace/content/EntityType.java | 14 +- .../dspace/content/EntityTypeServiceImpl.java | 2 +- .../dspace/content/FeedbackServiceImpl.java | 4 +- .../content/InstallItemServiceImpl.java | 20 +- .../main/java/org/dspace/content/Item.java | 29 +- .../org/dspace/content/ItemServiceImpl.java | 102 ++- .../org/dspace/content/MetadataField.java | 27 +- .../org/dspace/content/MetadataFieldName.java | 3 +- .../org/dspace/content/MetadataSchema.java | 19 +- .../org/dspace/content/MetadataValue.java | 36 +- .../content/PredefinedUUIDGenerator.java | 3 +- .../org/dspace/content/QAEventProcessed.java | 16 +- .../java/org/dspace/content/Relationship.java | 24 +- .../org/dspace/content/RelationshipType.java | 26 +- .../main/java/org/dspace/content/Site.java | 13 +- .../org/dspace/content/WorkspaceItem.java | 24 +- .../content/WorkspaceItemServiceImpl.java | 77 +- .../authority/DSpaceControlledVocabulary.java | 6 +- ...ommonsRDFStreamDisseminationCrosswalk.java | 1 - ...mmonsTextStreamDisseminationCrosswalk.java | 1 - .../LicenseStreamDisseminationCrosswalk.java | 1 - .../crosswalk/METSRightsCrosswalk.java | 109 +-- ...ubscriptionDsoMetadataForEmailCompose.java | 2 +- .../java/org/dspace/content/dao/ItemDAO.java | 13 +- .../content/dao/impl/BitstreamDAOImpl.java | 76 +- .../dao/impl/BitstreamFormatDAOImpl.java | 17 +- .../content/dao/impl/CollectionDAOImpl.java | 21 +- .../content/dao/impl/CommunityDAOImpl.java | 24 +- .../content/dao/impl/EntityTypeDAOImpl.java | 12 +- .../dspace/content/dao/impl/ItemDAOImpl.java | 113 ++- .../dao/impl/MetadataFieldDAOImpl.java | 12 +- .../dao/impl/MetadataSchemaDAOImpl.java | 10 +- .../dao/impl/MetadataValueDAOImpl.java | 14 +- .../content/dao/impl/ProcessDAOImpl.java | 22 +- .../content/dao/impl/RelationshipDAOImpl.java | 47 +- .../dao/impl/RelationshipTypeDAOImpl.java | 12 +- .../dspace/content/dao/impl/SiteDAOImpl.java | 6 +- .../dao/impl/WorkspaceItemDAOImpl.java | 12 +- .../dspace/content/dto/MetadataValueDTO.java | 59 ++ .../packager/AbstractMETSDisseminator.java | 1 + .../packager/AbstractMETSIngester.java | 3 + .../content/packager/PackageParameters.java | 3 +- .../dspace/content/packager/PackageUtils.java | 2 +- .../content/packager/RoleDisseminator.java | 2 +- .../content/service/BitstreamService.java | 2 +- .../content/service/CollectionService.java | 5 +- .../content/service/CommunityService.java | 5 +- .../content/service/FeedbackService.java | 4 +- .../dspace/content/service/ItemService.java | 12 + .../content/service/WorkspaceItemService.java | 21 +- .../dspace/contentreport/QueryOperator.java | 8 +- .../org/dspace/core/AbstractHibernateDAO.java | 27 +- .../dspace/core/AbstractHibernateDSODAO.java | 6 +- .../src/main/java/org/dspace/core/Email.java | 34 +- .../dspace/core/HibernateDBConnection.java | 1 - .../org/dspace/core/HibernateProxyHelper.java | 39 + .../main/java/org/dspace/core/I18nUtil.java | 6 +- .../src/main/java/org/dspace/core/LDN.java | 2 +- .../org/dspace/core/LicenseServiceImpl.java | 2 +- .../discovery/FullTextContentStreams.java | 2 +- .../org/dspace/discovery/SolrSearchCore.java | 2 +- .../org/dspace/discovery/SolrServiceImpl.java | 2 +- .../DiscoverySortConfiguration.java | 2 +- .../dspace/eperson/AccountServiceImpl.java | 14 +- .../dspace/eperson/CaptchaServiceImpl.java | 2 +- .../main/java/org/dspace/eperson/EPerson.java | 26 +- .../org/dspace/eperson/EPersonConsumer.java | 2 +- .../main/java/org/dspace/eperson/Group.java | 26 +- .../org/dspace/eperson/Group2GroupCache.java | 14 +- .../org/dspace/eperson/RegistrationData.java | 34 +- .../java/org/dspace/eperson/Subscription.java | 24 +- .../dspace/eperson/SubscriptionParameter.java | 19 +- .../eperson/dao/impl/EPersonDAOImpl.java | 8 +- .../dao/impl/Group2GroupCacheDAOImpl.java | 10 +- .../dspace/eperson/dao/impl/GroupDAOImpl.java | 2 +- .../dao/impl/RegistrationDataDAOImpl.java | 10 +- .../eperson/dao/impl/SubscriptionDAOImpl.java | 25 +- .../eperson/service/AccountService.java | 2 +- .../eperson/service/EPersonService.java | 2 +- .../external/OpenaireRestConnector.java | 3 +- .../external/model/ExternalDataObject.java | 62 ++ .../provider/orcid/xml/Converter.java | 6 +- .../google/GoogleAsyncEventListener.java | 4 +- .../google/GoogleRecorderEventListener.java | 2 +- .../main/java/org/dspace/handle/Handle.java | 21 +- .../dspace/handle/dao/impl/HandleDAOImpl.java | 13 +- .../dspace/harvest/HarvestedCollection.java | 26 +- .../org/dspace/harvest/HarvestedItem.java | 24 +- .../java/org/dspace/harvest/OAIHarvester.java | 34 +- .../dao/impl/HarvestedCollectionDAOImpl.java | 17 +- .../dao/impl/HarvestedItemDAOImpl.java | 8 +- .../main/java/org/dspace/health/Report.java | 2 +- .../main/java/org/dspace/identifier/DOI.java | 21 +- .../org/dspace/identifier/DOIServiceImpl.java | 10 + .../identifier/HandleIdentifierProvider.java | 2 - .../VersionedHandleIdentifierProvider.java | 2 - ...dentifierProviderWithCanonicalHandles.java | 2 - .../identifier/dao/impl/DOIDAOImpl.java | 8 +- .../dspace/identifier/doi/DOIOrganiser.java | 2 +- .../dspace/identifier/service/DOIService.java | 17 + ...rallelImportMetadataSourceServiceImpl.java | 2 +- .../external/ads/ADSFieldMapping.java | 2 +- .../ADSImportMetadataSourceServiceImpl.java | 2 +- .../metadatamapping/ArXivFieldMapping.java | 2 +- .../ArXivImportMetadataSourceServiceImpl.java | 14 +- ...BibtexImportMetadataSourceServiceImpl.java | 2 +- .../external/cinii/CiniiFieldMapping.java | 2 +- .../CiniiImportMetadataSourceServiceImpl.java | 2 +- .../crossref/CrossRefAbstractProcessor.java | 123 +++ .../crossref/CrossRefFieldMapping.java | 2 +- ...ossRefImportMetadataSourceServiceImpl.java | 16 +- .../datacite/DataCiteFieldMapping.java | 2 +- ...taCiteImportMetadataSourceServiceImpl.java | 53 +- .../external/epo/service/EpoFieldMapping.java | 2 +- .../AuthorMetadataContributor.java | 5 +- .../contributor/EpoIdMetadataContributor.java | 17 +- .../SimpleXpathMetadatumContributor.java | 2 +- .../WosAttribute2ValueContributor.java | 2 +- .../OpenAIREPublicationFieldMapping.java | 2 +- ...enAireImportMetadataSourceServiceImpl.java | 20 +- .../metadatamapping/PubmedFieldMapping.java | 2 +- .../PubmedEuropeFieldMapping.java | 2 +- ...PubmedEuropeMetadataSourceServiceImpl.java | 2 +- .../RisImportMetadataSourceServiceImpl.java | 2 +- .../external/ror/service/RorFieldMapping.java | 2 +- .../RorImportMetadataSourceServiceImpl.java | 2 +- .../scielo/service/ScieloFieldMapping.java | 2 +- ...ScieloImportMetadataSourceServiceImpl.java | 4 +- .../scopus/service/ScopusFieldMapping.java | 2 +- ...ScopusImportMetadataSourceServiceImpl.java | 22 +- .../importer/external/service/DoiCheck.java | 11 +- .../AbstractRemoteMetadataSource.java | 9 +- ...VuFindImportMetadataSourceServiceImpl.java | 2 +- .../metadatamapping/VuFindFieldMapping.java | 2 +- .../external/wos/service/WOSFieldMapping.java | 2 +- .../WOSImportMetadataSourceServiceImpl.java | 2 +- .../java/org/dspace/orcid/OrcidHistory.java | 41 +- .../java/org/dspace/orcid/OrcidQueue.java | 33 +- .../java/org/dspace/orcid/OrcidToken.java | 21 +- .../dspace/orcid/client/OrcidClientImpl.java | 8 +- .../orcid/dao/impl/OrcidHistoryDAOImpl.java | 2 +- .../orcid/dao/impl/OrcidQueueDAOImpl.java | 2 +- .../orcid/dao/impl/OrcidTokenDAOImpl.java | 2 +- .../impl/OrcidSynchronizationServiceImpl.java | 15 + .../profile/ResearcherProfileServiceImpl.java | 2 +- .../qaevent/dao/impl/QAEventsDAOImpl.java | 2 +- .../main/java/org/dspace/rdf/RDFConsumer.java | 2 +- .../src/main/java/org/dspace/rdf/RDFUtil.java | 2 +- .../src/main/java/org/dspace/rdf/RDFizer.java | 2 +- .../rdf/conversion/ConverterPlugin.java | 2 +- .../java/org/dspace/rdf/conversion/DMRM.java | 8 +- .../conversion/MetadataConverterPlugin.java | 20 +- .../rdf/conversion/MetadataRDFMapping.java | 16 +- .../dspace/rdf/conversion/RDFConverter.java | 2 +- .../rdf/conversion/RDFConverterImpl.java | 4 +- .../SimpleDSORelationsConverterPlugin.java | 8 +- .../conversion/StaticDSOConverterPlugin.java | 8 +- .../rdf/negotiation/NegotiationFilter.java | 16 +- .../dspace/rdf/negotiation/Negotiator.java | 2 +- .../org/dspace/rdf/storage/RDFStorage.java | 2 +- .../dspace/rdf/storage/RDFStorageImpl.java | 94 +-- .../main/java/org/dspace/scripts/Process.java | 45 +- .../configuration/ScriptConfiguration.java | 1 + .../org/dspace/service/ClientInfoService.java | 2 +- .../service/impl/ClientInfoServiceImpl.java | 2 +- .../impl/HttpConnectionPoolService.java | 8 +- .../statistics/HttpSolrClientFactory.java | 28 + .../dspace/statistics/SolrClientFactory.java | 25 + .../statistics/SolrLoggerServiceImpl.java | 142 +--- .../dspace/statistics/SolrStatisticsCore.java | 7 +- .../statistics/export/OpenURLTracker.java | 21 +- .../processor/BitstreamEventProcessor.java | 2 +- .../processor/ExportEventProcessor.java | 2 +- .../export/processor/ItemEventProcessor.java | 3 +- .../statistics/service/SolrLoggerService.java | 28 +- .../org/dspace/statistics/util/IPTable.java | 3 + .../statistics/util/SpiderDetector.java | 20 +- .../util/SpiderDetectorService.java | 40 +- .../util/SpiderDetectorServiceImpl.java | 43 +- .../statistics/util/StatisticsClient.java | 9 +- .../bitstore/BitstreamStorageServiceImpl.java | 2 +- .../storage/bitstore/S3BitStoreService.java | 103 ++- .../service/BitstreamStorageService.java | 2 +- .../dspace/storage/rdbms/DatabaseUtils.java | 2 +- .../consumer/SubmissionConfigConsumer.java | 49 +- .../submit/model/UploadConfiguration.java | 2 +- .../subscriptions/ContentGenerator.java | 1 + .../dspace/supervision/SupervisionOrder.java | 21 +- .../dao/impl/SupervisionOrderDaoImpl.java | 6 +- .../java/org/dspace/usage/UsageEvent.java | 2 +- .../org/dspace/usage/UsageSearchEvent.java | 2 +- .../dspace/util/DSpacePostgreSQLDialect.java | 35 +- .../dspace/util/JpaCriteriaBuilderKit.java | 6 +- .../dspace/util/MultiFormatDateParser.java | 2 +- .../DefaultItemVersionProvider.java | 4 +- .../java/org/dspace/versioning/Version.java | 27 +- .../org/dspace/versioning/VersionHistory.java | 23 +- .../versioning/dao/impl/VersionDAOImpl.java | 16 +- .../dao/impl/VersionHistoryDAOImpl.java | 10 +- .../main/java/org/dspace/web/ContextUtil.java | 6 +- .../dspace/workflow/CurationTaskConfig.java | 8 +- .../java/org/dspace/workflow/FlowStep.java | 3 +- .../main/java/org/dspace/workflow/Task.java | 3 +- .../java/org/dspace/workflow/TaskSet.java | 3 +- .../org/dspace/xmlworkflow/WorkflowUtils.java | 4 +- .../xmlworkflow/XmlWorkflowServiceImpl.java | 22 +- .../service/XmlWorkflowService.java | 4 +- .../xmlworkflow/state/actions/Action.java | 2 +- .../AcceptEditRejectAction.java | 2 +- .../processingaction/FinalEditAction.java | 2 +- .../processingaction/ProcessingAction.java | 2 +- .../processingaction/ReviewAction.java | 2 +- .../ScoreEvaluationAction.java | 2 +- .../processingaction/ScoreReviewAction.java | 2 +- .../SelectReviewerAction.java | 4 +- .../SingleUserReviewAction.java | 2 +- .../actions/userassignment/AssignAction.java | 2 +- .../AssignOriginalSubmitterAction.java | 4 +- .../userassignment/AutoAssignAction.java | 2 +- .../actions/userassignment/ClaimAction.java | 4 +- .../userassignment/InheritUsersAction.java | 2 +- .../userassignment/NoUserSelectionAction.java | 2 +- .../userassignment/UserSelectionAction.java | 2 +- .../storedcomponents/ClaimedTask.java | 27 +- .../storedcomponents/CollectionRole.java | 22 +- .../storedcomponents/InProgressUser.java | 21 +- .../storedcomponents/PoolTask.java | 29 +- .../storedcomponents/WorkflowItemRole.java | 22 +- .../storedcomponents/XmlWorkflowItem.java | 23 +- .../dao/impl/ClaimedTaskDAOImpl.java | 6 +- .../dao/impl/CollectionRoleDAOImpl.java | 8 +- .../dao/impl/InProgressUserDAOImpl.java | 10 +- .../dao/impl/PoolTaskDAOImpl.java | 6 +- .../dao/impl/WorkflowItemRoleDAOImpl.java | 6 +- .../dao/impl/XmlWorkflowItemDAOImpl.java | 14 +- ...ce_group_or_eperson_for_resourcepolicy.sql | 12 + ...24.03.07__set_eperson_process_nullable.sql | 9 + ...2024.05.07__process_eperson_constraint.sql | 13 + ...ce_group_or_eperson_for_resourcepolicy.sql | 12 + ...24.03.07__set_eperson_process_nullable.sql | 9 + ...2024.05.07__process_eperson_constraint.sql | 13 + .../org/dspace/workflow/workflow-curation.xsd | 4 +- .../dspaceFolder/config/item-submission.xml | 5 + .../test/data/dspaceFolder/config/local.cfg | 6 + .../config/spring/api/item-filters.xml | 6 +- .../config/spring/api/solr-services.xml | 8 +- .../AbstractIntegrationTestWithDatabase.java | 24 +- .../status/DefaultAccessStatusHelperTest.java | 25 +- .../dspace/app/bulkedit/MetadataImportIT.java | 27 +- .../app/itemexport/ItemExportCLIIT.java | 4 +- .../app/itemimport/ItemImportCLIIT.java | 4 +- .../dspace/app/ldn/LDNMessageConsumerIT.java | 15 +- .../ldn/action/SendLDNMessageActionIT.java | 9 +- .../org/dspace/app/packager/PackagerIT.java | 2 +- .../requestitem/JavaMailTestTransport.java | 12 +- .../RequestItemEmailNotifierTest.java | 19 +- .../RequestItemHelpdeskStrategyTest.java | 6 +- .../RequestItemSubmitterStrategyTest.java | 6 +- .../app/sherpa/SHERPADataProviderTest.java | 85 ++ .../SolrDatabaseResyncIT.java | 69 ++ .../app/suggestion/SuggestionUtilsIT.java | 4 +- .../dspace/app/util/GoogleMetadataTest.java | 56 +- .../dspace/app/util/SubmissionConfigIT.java | 9 + .../org/dspace/builder/AbstractBuilder.java | 5 + .../org/dspace/builder/BitstreamBuilder.java | 26 +- .../org/dspace/builder/CollectionBuilder.java | 3 +- .../java/org/dspace/builder/DOIBuilder.java | 90 ++ .../dspace/builder/NotifyServiceBuilder.java | 34 +- .../dspace/builder/RequestItemBuilder.java | 2 +- .../dspace/builder/ResourcePolicyBuilder.java | 20 +- .../dspace/builder/WorkspaceItemBuilder.java | 10 +- .../dao/impl/ChecksumHistoryDAOImplTest.java | 4 +- .../dspace/content/BitstreamFormatTest.java | 2 + .../java/org/dspace/content/BundleTest.java | 6 +- .../java/org/dspace/content/DCDateTest.java | 22 + .../dspace/content/EntityServiceImplTest.java | 10 +- .../java/org/dspace/content/ItemTest.java | 134 ++- .../dspace/content/packager/ITDSpaceAIP.java | 11 +- .../dspace/content/service/ItemServiceIT.java | 12 +- .../org/dspace/discovery/DiscoveryIT.java | 2 +- .../dspace/eperson/EPersonInWorkflowIT.java | 2 +- .../java/org/dspace/eperson/EPersonTest.java | 2 +- .../external/MockOpenaireRestConnector.java | 7 +- .../impl/OrcidPublicationDataProviderIT.java | 4 +- .../java/org/dspace/process/ProcessIT.java | 11 + .../java/org/dspace/solr/MockSolrServer.java | 24 +- .../statistics/EmbeddedSolrClientFactory.java | 85 ++ .../statistics/SolrLoggerServiceImplIT.java | 308 +++++++ .../ITIrusExportUsageEventListener.java | 2 +- .../processor/BitstreamEventProcessorIT.java | 4 +- .../processor/ExportEventProcessorIT.java | 2 +- .../util/DummyHttpServletRequest.java | 199 ++--- .../util/SpiderDetectorServiceImplTest.java | 2 +- .../statistics/util/SpiderDetectorTest.java | 2 +- .../storage/bitstore/S3BitStoreServiceIT.java | 24 +- .../util/DSpaceConfigurationInitializer.java | 6 +- .../java/org/dspace/util/DSpaceH2Dialect.java | 15 +- .../workflow/CurationTaskConfigTest.java | 2 +- .../dspace/workflow/WorkflowCurationIT.java | 1 + .../xmlworkflow/XmlWorkflowServiceIT.java | 2 +- .../actions/processingaction/NoAction.java | 2 +- dspace-iiif/pom.xml | 7 + .../model/generator/AnnotationGenerator.java | 2 +- .../generator/AnnotationListGenerator.java | 2 +- .../iiif/model/generator/CanvasGenerator.java | 2 +- .../generator/ContentSearchGenerator.java | 2 +- .../generator/ExternalLinksGenerator.java | 3 +- .../generator/ImageContentGenerator.java | 3 +- .../model/generator/ManifestGenerator.java | 2 +- .../iiif/model/generator/RangeGenerator.java | 2 +- dspace-oai/pom.xml | 4 +- .../app/configuration/OAIWebConfig.java | 4 +- .../controller/DSpaceOAIDataProvider.java | 8 +- .../impl/DSpaceEarliestDateResolver.java | 2 +- .../services/impl/DSpaceHandleResolver.java | 2 +- .../impl/context/DSpaceContextService.java | 3 +- .../xoai/DSpaceRepositoryConfiguration.java | 2 +- dspace-rdf/pom.xml | 4 +- .../rdf/providing/DataProviderServlet.java | 10 +- .../providing/LocalURIRedirectionServlet.java | 8 +- dspace-server-webapp/pom.xml | 38 +- .../rest/AuthenticationRestController.java | 4 +- .../app/rest/BitstreamBundleController.java | 4 +- .../rest/BitstreamCategoryRestController.java | 2 +- .../app/rest/BitstreamRestController.java | 42 +- .../rest/BundleUploadBitstreamController.java | 2 +- .../rest/CollectionGroupRestController.java | 4 +- .../CollectionHarvestSettingsController.java | 4 +- .../CollectionItemTemplateController.java | 4 +- .../app/rest/CollectionLogoController.java | 2 +- .../CommunityAdminGroupRestController.java | 4 +- .../app/rest/CommunityLogoController.java | 2 +- .../app/rest/ContentReportRestController.java | 4 +- .../dspace/app/rest/CsrfRestController.java | 62 ++ .../rest/EntityTypeLabelRestController.java | 4 +- .../dspace/app/rest/GroupRestController.java | 4 +- .../app/rest/HarvesterMetadataController.java | 4 +- .../app/rest/ItemAddBundleController.java | 4 +- ...mOwningCollectionUpdateRestController.java | 4 +- .../app/rest/ItemTemplateRestController.java | 2 +- .../dspace/app/rest/LDNInboxController.java | 4 +- .../rest/MappedCollectionRestController.java | 4 +- .../dspace/app/rest/OidcRestController.java | 4 +- .../dspace/app/rest/OpenSearchController.java | 7 +- .../app/rest/PrimaryBitstreamController.java | 2 +- .../app/rest/RelationshipRestController.java | 4 +- ...rcePolicyEPersonReplaceRestController.java | 4 +- ...ourcePolicyGroupReplaceRestController.java | 4 +- .../app/rest/RestResourceController.java | 23 +- .../app/rest/RootRestResourceController.java | 3 +- .../app/rest/SitemapRestController.java | 4 +- .../SubmissionCCLicenseUrlRepository.java | 2 +- .../app/rest/UUIDLookupRestController.java | 4 +- .../org/dspace/app/rest/WebApplication.java | 2 +- ...owDefinitionCollectionsLinkRepository.java | 4 +- ...WorkflowDefinitionStepsLinkRepository.java | 4 +- .../WorkflowStepActionsLinkRepository.java | 4 +- .../authorization/impl/DeleteFeature.java | 6 +- .../configuration/ActuatorConfiguration.java | 2 +- .../converter/AInprogressItemConverter.java | 9 - .../rest/converter/CollectionConverter.java | 9 +- .../rest/converter/CommunityConverter.java | 10 +- .../app/rest/converter/ConverterService.java | 4 +- .../rest/converter/JsonPatchConverter.java | 2 +- .../app/rest/converter/QAEventConverter.java | 2 +- .../rest/converter/RequestItemConverter.java | 3 +- .../rest/converter/SearchEventConverter.java | 2 +- .../SubmissionDefinitionConverter.java | 2 +- .../exception/DSpaceAccessDeniedHandler.java | 6 +- .../DSpaceApiExceptionControllerAdvice.java | 29 +- .../ContentLanguageHeaderResponseFilter.java | 14 +- .../filter/DSpaceRequestContextFilter.java | 12 +- .../HdlResolverRestController.java | 2 +- .../app/rest/health/SolrHealthIndicator.java | 123 +++ .../rest/model/AInprogressSubmissionRest.java | 29 +- .../app/rest/model/WorkflowItemRest.java | 25 +- .../app/rest/model/WorkspaceItemRest.java | 15 + .../rest/model/patch/JsonValueEvaluator.java | 3 +- .../app/rest/projection/Projection.java | 3 +- .../AuthorizationEpersonLinkRepository.java | 4 +- .../AuthorizationFeatureLinkRepository.java | 5 +- .../AuthorizationObjectLinkRepository.java | 4 +- .../BitstreamBundleLinkRepository.java | 4 +- .../BitstreamFormatLinkRepository.java | 4 +- .../BitstreamFormatRestRepository.java | 4 +- .../repository/BitstreamRestRepository.java | 5 +- .../BitstreamThumbnailLinkRepository.java | 4 +- .../repository/BrowseEntryLinkRepository.java | 2 +- .../repository/BrowseItemLinkRepository.java | 2 +- .../BundleBitstreamLinkRepository.java | 4 +- .../repository/BundleItemLinkRepository.java | 4 +- .../BundlePrimaryBitstreamLinkRepository.java | 4 +- .../rest/repository/BundleRestRepository.java | 2 +- .../repository/ClaimedTaskRestRepository.java | 4 +- .../ClaimedTaskStepLinkRepository.java | 4 +- .../CollectionAdminGroupLinkRepository.java | 4 +- ...ctionBitstreamReadGroupLinkRepository.java | 4 +- ...CollectionItemReadGroupLinkRepository.java | 4 +- .../CollectionLicenseLinkRepository.java | 4 +- .../CollectionLogoLinkRepository.java | 4 +- .../CollectionMappedItemLinkRepository.java | 4 +- ...llectionParentCommunityLinkRepository.java | 4 +- .../repository/CollectionRestRepository.java | 4 +- ...ollectionSubmitterGroupLinkRepository.java | 4 +- .../CommunityAdminGroupLinkRepository.java | 4 +- .../CommunityCollectionLinkRepository.java | 4 +- .../CommunityLogoLinkRepository.java | 4 +- ...ommunityParentCommunityLinkRepository.java | 4 +- .../repository/CommunityRestRepository.java | 4 +- .../CommunitySubcommunityLinkRepository.java | 4 +- .../rest/repository/DSpaceRestRepository.java | 7 +- .../EPersonGroupLinkRepository.java | 4 +- .../repository/EPersonRestRepository.java | 2 +- .../EntityTypeRelationshipLinkRepository.java | 4 +- ...xternalSourceEntityTypeLinkRepository.java | 4 +- .../repository/FeedbackRestRepository.java | 12 +- .../GroupEPersonLinkRepository.java | 4 +- .../repository/GroupGroupLinkRepository.java | 4 +- .../GroupParentObjectLinkRepository.java | 4 +- .../rest/repository/GroupRestRepository.java | 2 +- .../HarvestedCollectionRestRepository.java | 4 +- .../repository/IdentifierRestRepository.java | 6 +- .../ItemAccessStatusLinkRepository.java | 4 +- .../repository/ItemBundleLinkRepository.java | 4 +- .../ItemIdentifierLinkRepository.java | 4 +- .../ItemMappedCollectionLinkRepository.java | 4 +- .../ItemOwningCollectionLinkRepository.java | 4 +- .../ItemRelationshipLinkRepository.java | 4 +- .../rest/repository/ItemRestRepository.java | 4 +- .../ItemTemplateItemOfLinkRepository.java | 4 +- .../ItemThumbnailLinkRepository.java | 4 +- .../repository/ItemVersionLinkRepository.java | 4 +- .../repository/LDNMessageRestRepository.java | 2 +- .../MetadataFieldRestRepository.java | 2 +- .../MetadataSchemaRestRepository.java | 2 +- .../NotifyServiceRestRepository.java | 13 +- .../OrcidHistoryRestRepository.java | 2 +- .../PoolTaskStepLinkRepository.java | 4 +- .../ProcessFileTypesLinkRepository.java | 4 +- .../ProcessFilesLinkRepository.java | 4 +- .../ProcessOutputLinkRepository.java | 4 +- .../QAEventRelatedLinkRepository.java | 4 +- .../repository/QAEventRestRepository.java | 4 +- .../QAEventTargetLinkRepository.java | 4 +- .../QAEventTopicLinkRepository.java | 5 +- .../RegistrationRestRepository.java | 11 +- .../RelationshipRestRepository.java | 37 +- ...ionshipTypeRelationshipLinkRepository.java | 4 +- .../repository/RequestItemRepository.java | 8 +- ...esearcherProfileEPersonLinkRepository.java | 4 +- .../ResearcherProfileItemLinkRepository.java | 4 +- .../ResearcherProfileRestRepository.java | 2 +- .../ResourcePolicyRestRepository.java | 33 +- .../repository/SearchEventRestRepository.java | 4 +- .../rest/repository/SiteRestRepository.java | 2 +- ...ubscriptionDSpaceObjectLinkRepository.java | 4 +- .../SubscriptionEPersonLinkRepository.java | 4 +- .../SubscriptionRestRepository.java | 4 +- .../SuggestionTargetTargetLinkRepository.java | 4 +- .../SupervisionOrderRestRepository.java | 2 +- .../SystemWideAlertRestRepository.java | 4 +- ...sionHistoryDraftVersionLinkRepository.java | 4 +- .../VersionHistoryLinkRepository.java | 4 +- .../repository/VersionItemLinkRepository.java | 4 +- .../repository/VersionRestRepository.java | 2 +- .../repository/VersionsLinkRepository.java | 4 +- .../repository/ViewEventRestRepository.java | 4 +- ...aryEntryDetailsChildrenLinkRepository.java | 4 +- ...ularyEntryDetailsParentLinkRepository.java | 7 +- .../VocabularyEntryLinkRepository.java | 4 +- .../WorkflowItemCollectionLinkRepository.java | 60 ++ .../WorkflowItemItemLinkRepository.java | 60 ++ .../WorkflowItemRestRepository.java | 2 +- .../WorkflowItemStepLinkRepository.java | 4 +- .../WorkflowItemSubmitterLinkRepository.java | 60 ++ ...WorkspaceItemCollectionLinkRepository.java | 60 ++ .../WorkspaceItemItemLinkRepository.java | 60 ++ .../WorkspaceItemRestRepository.java | 2 +- .../WorkspaceItemSubmitterLinkRepository.java | 60 ++ ...ceItemSupervisionOrdersLinkRepository.java | 4 +- ...nalSourceCorrectionTypeUriListHandler.java | 2 +- ...SourceEntryArchivedItemUriListHandler.java | 2 +- ...ExternalSourceEntryItemUriListHandler.java | 2 +- ...alSourceEntryOrcidQueueUriListHandler.java | 2 +- ...rnalSourceEntryPoolTaskUriListHandler.java | 2 +- ...ourceEntryWorkspaceItemUriListHandler.java | 2 +- .../ExternalSourceItemUriListHandler.java | 2 +- .../repository/handler/UriListHandler.java | 2 +- .../service/UriListHandlerService.java | 2 +- ...ServiceInboundPatternsRemoveOperation.java | 2 +- ...nonymousAdditionalAuthorizationFilter.java | 8 +- .../rest/security/CustomLogoutHandler.java | 5 +- .../DSpace401AuthenticationEntryPoint.java | 6 +- .../DSpaceCsrfAuthenticationStrategy.java | 78 +- .../security/DSpaceCsrfTokenRepository.java | 234 ++++-- .../security/DSpacePermissionEvaluator.java | 3 +- .../EPersonRestAuthenticationProvider.java | 4 +- .../EPersonRestPermissionEvaluatorPlugin.java | 5 +- ...orOfAInprogressSubmissionInformations.java | 4 +- .../GroupRestPermissionEvaluatorPlugin.java | 3 + .../rest/security/MethodSecurityConfig.java | 59 +- .../app/rest/security/OidcLoginFilter.java | 17 +- .../app/rest/security/OrcidLoginFilter.java | 18 +- ...rProfileRestPermissionEvaluatorPlugin.java | 2 +- .../security/RestAuthenticationService.java | 4 +- .../rest/security/ShibbolethLoginFilter.java | 12 +- .../StatelessAuthenticationFilter.java | 8 +- .../rest/security/StatelessLoginFilter.java | 23 +- .../security/WebSecurityConfiguration.java | 145 ++-- .../WebSecurityExpressionEvaluator.java | 6 +- .../AuthenticationMethodClaimProvider.java | 2 +- .../security/jwt/EPersonClaimProvider.java | 2 +- .../rest/security/jwt/JWTClaimProvider.java | 2 +- .../rest/security/jwt/JWTTokenHandler.java | 2 +- ...JWTTokenRestAuthenticationServiceImpl.java | 20 +- .../jwt/ShortLivedJWTTokenHandler.java | 2 +- .../jwt/SpecialGroupClaimProvider.java | 2 +- .../controller/LinksetRestController.java | 4 +- .../processor/SignPostingProcessor.java | 2 +- .../bitstream/BitstreamLinksetProcessor.java | 2 +- .../BitstreamParentItemProcessor.java | 2 +- .../bitstream/BitstreamTypeProcessor.java | 2 +- .../processor/item/ItemAuthorProcessor.java | 2 +- .../item/ItemContentBitstreamsProcessor.java | 2 +- .../item/ItemDescribedbyProcessor.java | 2 +- .../item/ItemIdentifierProcessor.java | 2 +- .../processor/item/ItemLicenseProcessor.java | 2 +- .../processor/item/ItemLinksetProcessor.java | 2 +- .../processor/item/ItemTypeProcessor.java | 2 +- ...MetadataDescribesSignpostingProcessor.java | 2 +- .../signposting/service/LinksetService.java | 2 +- .../service/impl/LinksetServiceImpl.java | 2 +- .../app/rest/submit/DataProcessingStep.java | 2 +- .../app/rest/submit/SubmissionService.java | 2 +- .../AccessConditionAddPatchOperation.java | 2 +- ...tionDiscoverableReplacePatchOperation.java | 2 +- .../AccessConditionRemovePatchOperation.java | 2 +- .../AccessConditionReplacePatchOperation.java | 2 +- .../factory/impl/AddPatchOperation.java | 3 +- ...tstreamMetadataValueAddPatchOperation.java | 7 +- ...streamMetadataValueMovePatchOperation.java | 2 +- ...reamMetadataValueRemovePatchOperation.java | 2 +- ...eamMetadataValueReplacePatchOperation.java | 4 +- .../impl/BitstreamMovePatchOperation.java | 3 +- .../impl/BitstreamRemovePatchOperation.java | 2 +- ...streamResourcePolicyAddPatchOperation.java | 2 +- ...eamResourcePolicyRemovePatchOperation.java | 2 +- ...amResourcePolicyReplacePatchOperation.java | 2 +- .../impl/CCLicenseAddPatchOperation.java | 5 +- .../impl/CCLicenseRemovePatchOperation.java | 3 +- .../impl/CollectionReplacePatchOperation.java | 2 +- .../ItemMetadataValueAddPatchOperation.java | 7 +- .../ItemMetadataValueMovePatchOperation.java | 3 +- ...ItemMetadataValueRemovePatchOperation.java | 3 +- ...temMetadataValueReplacePatchOperation.java | 8 +- .../impl/LicenseAddPatchOperation.java | 3 +- .../impl/LicenseRemovePatchOperation.java | 3 +- .../impl/LicenseReplacePatchOperation.java | 3 +- .../factory/impl/MovePatchOperation.java | 3 +- .../impl/NotifyServiceAddPatchOperation.java | 2 +- .../NotifyServiceRemovePatchOperation.java | 2 +- .../NotifyServiceReplacePatchOperation.java | 2 +- .../submit/factory/impl/PatchOperation.java | 11 +- .../PrimaryBitstreamAddPatchOperation.java | 2 +- .../PrimaryBitstreamRemovePatchOperation.java | 2 +- ...PrimaryBitstreamReplacePatchOperation.java | 2 +- .../factory/impl/RemovePatchOperation.java | 3 +- .../factory/impl/ReplacePatchOperation.java | 3 +- .../rest/submit/step/AccessConditionStep.java | 2 +- .../app/rest/submit/step/CCLicenseStep.java | 3 +- .../app/rest/submit/step/CollectionStep.java | 2 +- .../app/rest/submit/step/DescribeStep.java | 2 +- .../submit/step/DuplicateDetectionStep.java | 5 +- .../app/rest/submit/step/LicenseStep.java | 3 +- .../app/rest/submit/step/NotifyStep.java | 3 +- .../rest/submit/step/SherpaPolicyStep.java | 2 +- .../rest/submit/step/ShowIdentifiersStep.java | 2 +- .../app/rest/submit/step/UploadStep.java | 2 +- .../BitstreamMetadataValuePathUtils.java | 13 +- .../dspace/app/rest/utils/ContextUtil.java | 6 +- .../utils/DSpaceAPIRequestLoggingFilter.java | 2 +- .../utils/DSpaceConfigurationInitializer.java | 6 +- .../rest/utils/HttpHeadersInitializer.java | 6 +- .../dspace/app/rest/utils/ScopeResolver.java | 22 + .../java/org/dspace/app/rest/utils/Utils.java | 6 +- .../opensearch/OpenSearchControllerIT.java | 55 +- .../test/java/org/dspace/app/rdf/RdfIT.java | 2 +- .../ADSImportMetadataSourceServiceIT.java | 2 +- .../rest/AuthenticationRestControllerIT.java | 11 +- .../app/rest/BitstreamControllerIT.java | 130 +-- .../rest/BitstreamFormatRestRepositoryIT.java | 2 +- .../app/rest/BitstreamRestControllerIT.java | 106 ++- .../app/rest/BitstreamRestRepositoryIT.java | 62 +- .../app/rest/BundleRestRepositoryIT.java | 6 +- .../rest/CCLicenseAddPatchOperationIT.java | 6 +- .../rest/CCLicenseRemovePatchOperationIT.java | 6 +- .../app/rest/CollectionRestRepositoryIT.java | 35 +- .../app/rest/CommunityRestRepositoryIT.java | 18 +- .../rest/ConfigurationRestRepositoryIT.java | 5 + ...CrossRefImportMetadataSourceServiceIT.java | 2 +- .../dspace/app/rest/CsrfRestControllerIT.java | 60 ++ ...DataCiteImportMetadataSourceServiceIT.java | 21 +- .../app/rest/DiscoveryRestControllerIT.java | 30 +- .../app/rest/DuplicateDetectionRestIT.java | 2 +- .../app/rest/EPersonRestRepositoryIT.java | 2 +- .../app/rest/GroupRestRepositoryIT.java | 20 +- ...wningCollectionUpdateRestControllerIT.java | 32 +- .../dspace/app/rest/ItemRestRepositoryIT.java | 10 +- .../rest/ItemTemplateRestControllerIT.java | 12 +- .../dspace/app/rest/LDNInboxControllerIT.java | 27 +- .../app/rest/LDNMessageRestControllerIT.java | 3 +- .../app/rest/LDNMessageRestRepositoryIT.java | 8 +- .../org/dspace/app/rest/LoginAsEPersonIT.java | 4 +- .../MappedCollectionRestRepositoryIT.java | 26 +- .../NotifyRequestStatusRestControllerIT.java | 45 +- .../rest/NotifyServiceRestRepositoryIT.java | 188 ++--- .../OidcAuthenticationRestControllerIT.java | 2 +- .../dspace/app/rest/OrcidLoginFilterIT.java | 2 +- .../org/dspace/app/rest/PatchMetadataIT.java | 32 +- .../app/rest/QAEventRestRepositoryIT.java | 6 +- .../rest/RegistrationRestRepositoryIT.java | 2 +- .../RelationshipDeleteRestRepositoryIT.java | 371 ++++---- .../rest/RelationshipRestRepositoryIT.java | 74 +- .../app/rest/RequestItemRepositoryIT.java | 20 +- .../ResearcherProfileRestRepositoryIT.java | 151 ++++ .../rest/ResourcePolicyRestRepositoryIT.java | 521 +++++++----- .../ScieloImportMetadataSourceServiceIT.java | 2 +- .../ScopusImportMetadataSourceServiceIT.java | 5 +- .../dspace/app/rest/SiteRestRepositoryIT.java | 2 +- .../app/rest/SitemapRestControllerIT.java | 12 +- .../app/rest/StatisticsRestRepositoryIT.java | 52 +- .../app/rest/SuggestionRestRepositoryIT.java | 4 +- .../SupervisionOrderRestRepositoryIT.java | 2 +- .../app/rest/TaskRestRepositoriesIT.java | 4 +- .../app/rest/VersionRestRepositoryIT.java | 32 +- .../VuFindImportMetadataSourceServiceIT.java | 2 +- .../WorkflowItemRestLinkRepositoryIT.java | 226 +++++ .../rest/WorkflowItemRestRepositoryIT.java | 2 +- .../WorkspaceItemRestLinkRepositoryIT.java | 222 +++++ .../rest/WorkspaceItemRestRepositoryIT.java | 201 +++-- .../authorization/CCLicenseFeatureRestIT.java | 6 +- .../CanManageBitstreamBundlesFeatureIT.java | 20 +- .../CanManageMappingsFeatureIT.java | 9 +- .../authorization/CanSubscribeFeatureIT.java | 5 +- .../CollectionAdminFeatureIT.java | 8 +- .../authorization/ComColAdminFeatureIT.java | 12 +- .../rest/authorization/EditItemFeatureIT.java | 12 +- .../GenericAuthorizationFeatureIT.java | 91 +- .../ManageAdminGroupFeatureIT.java | 6 +- .../ManageSubmitterGroupFeatureIT.java | 6 +- .../ManageTemplateItemFeatureIT.java | 6 +- .../ManageWorkflowGroupFeatureIT.java | 6 +- .../rest/authorization/SubmitFeatureIT.java | 24 +- .../eperson/DeleteEPersonSubmitterIT.java | 2 +- .../app/rest/iiif/IIIFControllerIT.java | 2 +- .../rest/matcher/ResourcePolicyMatcher.java | 3 +- .../app/rest/projection/MockProjection.java | 3 +- ...AbstractMockObjectChildLinkRepository.java | 4 +- .../DSpaceCsrfTokenRepositoryTest.java | 326 +++++-- .../security/ShibbolethLoginFilterIT.java | 2 +- .../jwt/EPersonClaimProviderTest.java | 2 +- .../security/jwt/JWTTokenHandlerTest.java | 2 +- .../jwt/ShortLivedJWTTokenHandlerTest.java | 2 +- .../jwt/SpecialGroupClaimProviderTest.java | 2 +- .../AbstractControllerIntegrationTest.java | 193 ++++- .../AbstractWebClientIntegrationTest.java | 2 +- .../app/rest/test/MetadataPatchSuite.java | 3 +- .../java/org/dspace/app/sword2/Swordv2IT.java | 139 ++- .../impl/MockOpenaireFundingDataProvider.java | 7 +- .../org/dspace/app/rest/cinii-second.xml | 4 +- .../dspace/app/rest/dataCite-noResults.json | 1 + .../org/dspace/app/rest/dataCite-test.json | 2 +- .../app/rest/ldn_announce_endorsement.json | 2 +- .../dspace/app/rest/ldn_announce_release.json | 4 +- .../dspace/app/rest/ldn_announce_review.json | 2 +- .../app/rest/ldn_offer_endorsement.json | 2 +- .../ldn_offer_endorsement_badrequest.json | 2 +- .../rest/ldn_offer_endorsement_object.json | 2 +- .../org/dspace/app/rest/ldn_offer_review.json | 2 +- .../dspace/app/rest/ldn_offer_review2.json | 2 +- .../dspace/app/rest/ldn_offer_review3.json | 39 + .../rest/ldn_origin_inbox_unregistered.json | 2 +- .../org/dspace/app/rest/ror-record.json | 4 +- .../org/dspace/app/rest/ror-records.json | 42 +- .../org/dspace/app/rest/scopus-empty-resp.xml | 8 +- .../org/dspace/license/cc-license-rdf.xml | 36 +- dspace-services/pom.xml | 19 +- .../servicemanager/DSpaceServiceManager.java | 9 +- ...aceConfigurationPlaceholderConfigurer.java | 5 +- .../DSpaceConfigurationPropertySource.java | 64 ++ .../org/dspace/services/EmailService.java | 2 +- .../org/dspace/services/RequestService.java | 4 +- .../services/email/EmailServiceImpl.java | 10 +- .../services/events/SystemEventService.java | 2 +- .../org/dspace/services/model/Request.java | 8 +- .../org/dspace/services/model/Session.java | 3 +- .../sessions/StatelessRequestServiceImpl.java | 8 +- .../sessions/model/HttpRequestImpl.java | 9 +- .../sessions/model/InternalRequestImpl.java | 8 +- .../main/java/org/dspace/utils/DSpace.java | 8 + .../servlet/DSpaceWebappServletFilter.java | 22 +- .../DSpaceServiceManagerTest.java | 4 +- .../servicemanager/SampleAnnotationBean.java | 5 +- .../fakeservices/FakeService1.java | 4 +- .../fakeservices/FakeService2.java | 3 +- .../services/email/EmailServiceImplTest.java | 7 +- dspace-sword/pom.xml | 18 +- .../java/org/purl/sword/base/Deposit.java | 2 +- .../java/org/purl/sword/base/HttpHeaders.java | 2 +- .../org/purl/sword/client/ServletClient.java | 455 ---------- .../sword/server/AtomDocumentServlet.java | 6 +- .../org/purl/sword/server/DepositServlet.java | 12 +- .../org/purl/sword/server/DummyServer.java | 2 +- .../sword/server/ServiceDocumentServlet.java | 12 +- dspace-swordv2/pom.xml | 61 +- .../dspace/sword2/ContainerManagerDSpace.java | 2 +- .../sword2/GenericStatementDisseminator.java | 18 + .../org/dspace/sword2/ReceiptGenerator.java | 43 +- dspace/config/dspace.cfg | 38 +- dspace/config/emails/batch_import_error | 19 + dspace/config/emails/batch_import_success | 16 + dspace/config/hibernate.cfg.xml | 2 +- dspace/config/ldn/announce-relationship | 62 ++ dspace/config/ldn/request-endorsement | 2 +- dspace/config/ldn/request-ingest | 2 +- dspace/config/ldn/request-review | 2 +- dspace/config/modules/identifiers.cfg | 9 +- dspace/config/modules/ldn.cfg | 11 +- dspace/config/modules/openaire-client.cfg | 4 +- dspace/config/modules/orcid.cfg | 3 + .../config/modules/rdf/fuseki-assembler.ttl | 2 +- dspace/config/modules/rest.cfg | 151 +--- dspace/config/modules/solr-statistics.cfg | 4 - .../config/registries/bitstream-formats.xml | 9 + dspace/config/spring/api/core-hibernate.xml | 2 +- dspace/config/spring/api/core-services.xml | 3 + .../spring/api/crossref-integration.xml | 5 +- dspace/config/spring/api/discovery.xml | 8 +- .../config/spring/api/external-services.xml | 2 - .../config/spring/api/identifier-service.xml | 16 +- dspace/config/spring/api/item-filters.xml | 2 - dspace/config/spring/api/ldn-coar-notify.xml | 17 + dspace/config/spring/api/orcid-services.xml | 2 +- dspace/config/spring/api/solr-services.xml | 29 +- dspace/config/spring/api/virtual-metadata.xml | 2 +- dspace/modules/additions/pom.xml | 11 +- dspace/modules/server/pom.xml | 7 + dspace/pom.xml | 4 +- dspace/solr/search/conf/schema.xml | 1 + dspace/src/main/assembly/assembly.xml | 21 +- dspace/src/main/config/build.xml | 19 +- dspace/src/main/docker-compose/README.md | 60 +- .../main/docker-compose/cli.assetstore.yml | 2 - dspace/src/main/docker-compose/cli.ingest.yml | 2 - .../src/main/docker-compose/db.entities.yml | 25 +- dspace/src/main/docker-compose/db.restore.yml | 2 - .../docker-compose/docker-compose-angular.yml | 1 - .../docker-compose/docker-compose-iiif.yml | 1 - .../docker-compose-shibboleth.yml | 1 - dspace/src/main/docker/README.md | 26 +- .../dspace-postgres-pgcrypto-curl/Dockerfile | 2 +- .../install-pgcrypto.sh | 6 +- .../dspace-postgres-pgcrypto/Dockerfile | 2 +- .../install-pgcrypto.sh | 4 +- .../httpd-shibd-foreground.sh | 0 dspace/src/main/docker/test/rest_web.xml | 118 --- pom.xml | 323 ++++--- .../license/LICENSES_THIRD_PARTY.properties | 86 +- 869 files changed, 9594 insertions(+), 6841 deletions(-) delete mode 100644 .lgtm.yml delete mode 100644 dspace-api/src/main/java/org/dspace/browse/ItemCountDAOFactory.java delete mode 100644 dspace-api/src/main/java/org/dspace/browse/ItemCountException.java create mode 100644 dspace-api/src/main/java/org/dspace/content/CacheableDSpaceObject.java create mode 100644 dspace-api/src/main/java/org/dspace/core/HibernateProxyHelper.java create mode 100644 dspace-api/src/main/java/org/dspace/importer/external/crossref/CrossRefAbstractProcessor.java create mode 100644 dspace-api/src/main/java/org/dspace/statistics/HttpSolrClientFactory.java create mode 100644 dspace-api/src/main/java/org/dspace/statistics/SolrClientFactory.java create mode 100644 dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/h2/V7.6_2023.09.28__enforce_group_or_eperson_for_resourcepolicy.sql create mode 100644 dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/h2/V7.6_2024.03.07__set_eperson_process_nullable.sql create mode 100644 dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/h2/V7.6_2024.05.07__process_eperson_constraint.sql create mode 100644 dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/postgres/V7.6_2023.09.28__enforce_group_or_eperson_for_resourcepolicy.sql create mode 100644 dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/postgres/V7.6_2024.03.07__set_eperson_process_nullable.sql create mode 100644 dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/postgres/V7.6_2024.05.07__process_eperson_constraint.sql create mode 100644 dspace-api/src/test/java/org/dspace/builder/DOIBuilder.java create mode 100644 dspace-api/src/test/java/org/dspace/statistics/EmbeddedSolrClientFactory.java create mode 100644 dspace-api/src/test/java/org/dspace/statistics/SolrLoggerServiceImplIT.java create mode 100644 dspace-server-webapp/src/main/java/org/dspace/app/rest/CsrfRestController.java create mode 100644 dspace-server-webapp/src/main/java/org/dspace/app/rest/health/SolrHealthIndicator.java create mode 100644 dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/WorkflowItemCollectionLinkRepository.java create mode 100644 dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/WorkflowItemItemLinkRepository.java create mode 100644 dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/WorkflowItemSubmitterLinkRepository.java create mode 100644 dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/WorkspaceItemCollectionLinkRepository.java create mode 100644 dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/WorkspaceItemItemLinkRepository.java create mode 100644 dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/WorkspaceItemSubmitterLinkRepository.java create mode 100644 dspace-server-webapp/src/test/java/org/dspace/app/rest/CsrfRestControllerIT.java create mode 100644 dspace-server-webapp/src/test/java/org/dspace/app/rest/WorkflowItemRestLinkRepositoryIT.java create mode 100644 dspace-server-webapp/src/test/java/org/dspace/app/rest/WorkspaceItemRestLinkRepositoryIT.java create mode 100644 dspace-server-webapp/src/test/resources/org/dspace/app/rest/dataCite-noResults.json create mode 100644 dspace-server-webapp/src/test/resources/org/dspace/app/rest/ldn_offer_review3.json create mode 100644 dspace-services/src/main/java/org/dspace/servicemanager/config/DSpaceConfigurationPropertySource.java delete mode 100644 dspace-sword/src/main/java/org/purl/sword/client/ServletClient.java create mode 100644 dspace/config/emails/batch_import_error create mode 100644 dspace/config/emails/batch_import_success create mode 100644 dspace/config/ldn/announce-relationship mode change 100644 => 100755 dspace/src/main/docker/dspace-shibboleth/httpd-shibd-foreground.sh delete mode 100644 dspace/src/main/docker/test/rest_web.xml diff --git a/.github/workflows/build.yml b/.github/workflows/build.yml index 723e85ea6028..0144b58510f9 100644 --- a/.github/workflows/build.yml +++ b/.github/workflows/build.yml @@ -24,7 +24,7 @@ jobs: # NOTE: Unit Tests include a retry for occasionally failing tests # - surefire.rerunFailingTestsCount => try again for flakey tests, and keep track of/report on number of retries - type: "Unit Tests" - java: 11 + java: 17 mvnflags: "-Dtest.argLine=-Xmx2048m -DskipUnitTests=false -Dsurefire.rerunFailingTestsCount=2" resultsdir: "**/target/surefire-reports/**" # NOTE: ITs skip all code validation checks, as they are already done by Unit Test job. @@ -34,7 +34,7 @@ jobs: # - xml.skip => Skip all XML/XSLT validation by xml-maven-plugin # - failsafe.rerunFailingTestsCount => try again for flakey tests, and keep track of/report on number of retries - type: "Integration Tests" - java: 11 + java: 17 mvnflags: "-DskipIntegrationTests=false -Denforcer.skip=true -Dcheckstyle.skip=true -Dlicense.skip=true -Dxml.skip=true -Dfailsafe.rerunFailingTestsCount=2" resultsdir: "**/target/failsafe-reports/**" # Do NOT exit immediately if one matrix job fails @@ -49,7 +49,7 @@ jobs: # https://github.com/actions/setup-java - name: Install JDK ${{ matrix.java }} - uses: actions/setup-java@v3 + uses: actions/setup-java@v4 with: java-version: ${{ matrix.java }} distribution: 'temurin' @@ -74,14 +74,14 @@ jobs: # (This artifact is downloadable at the bottom of any job's summary page) - name: Upload Results of ${{ matrix.type }} to Artifact if: ${{ failure() }} - uses: actions/upload-artifact@v3 + uses: actions/upload-artifact@v4 with: name: ${{ matrix.type }} results path: ${{ matrix.resultsdir }} # Upload code coverage report to artifact, so that it can be shared with the 'codecov' job (see below) - name: Upload code coverage report to Artifact - uses: actions/upload-artifact@v3 + uses: actions/upload-artifact@v4 with: name: ${{ matrix.type }} coverage report path: 'dspace/target/site/jacoco-aggregate/jacoco.xml' @@ -100,7 +100,7 @@ jobs: # Download artifacts from previous 'tests' job - name: Download coverage artifacts - uses: actions/download-artifact@v3 + uses: actions/download-artifact@v4 # Now attempt upload to Codecov using its action. # NOTE: We use a retry action to retry the Codecov upload if it fails the first time. @@ -110,10 +110,11 @@ jobs: - name: Upload coverage to Codecov.io uses: Wandalen/wretry.action@v1.3.0 with: - action: codecov/codecov-action@v3 + action: codecov/codecov-action@v4 # Ensure codecov-action throws an error when it fails to upload with: | fail_ci_if_error: true + token: ${{ secrets.CODECOV_TOKEN }} # Try re-running action 5 times max attempt_limit: 5 # Run again in 30 seconds diff --git a/.github/workflows/codescan.yml b/.github/workflows/codescan.yml index 13bb0d2278ad..3a563c6fa39c 100644 --- a/.github/workflows/codescan.yml +++ b/.github/workflows/codescan.yml @@ -39,9 +39,9 @@ jobs: # https://github.com/actions/setup-java - name: Install JDK - uses: actions/setup-java@v3 + uses: actions/setup-java@v4 with: - java-version: 11 + java-version: 17 distribution: 'temurin' # Initializes the CodeQL tools for scanning. diff --git a/.github/workflows/docker.yml b/.github/workflows/docker.yml index 719e953fa601..a9ff8760e763 100644 --- a/.github/workflows/docker.yml +++ b/.github/workflows/docker.yml @@ -43,7 +43,7 @@ jobs: needs: dspace-dependencies uses: ./.github/workflows/reusable-docker-build.yml with: - build_id: dspace + build_id: dspace-prod image_name: dspace/dspace dockerfile_path: ./Dockerfile secrets: @@ -120,7 +120,7 @@ jobs: if: github.repository == 'dspace/dspace' uses: ./.github/workflows/reusable-docker-build.yml with: - build_id: dspace-postgres-pgcrypto + build_id: dspace-postgres-pgcrypto-prod image_name: dspace/dspace-postgres-pgcrypto # Must build out of subdirectory to have access to install script for pgcrypto. # NOTE: this context will build the image based on the Dockerfile in the specified directory @@ -129,354 +129,6 @@ jobs: DOCKER_USERNAME: ${{ secrets.DOCKER_USERNAME }} DOCKER_ACCESS_TOKEN: ${{ secrets.DOCKER_ACCESS_TOKEN }} -<<<<<<< HEAD - # https://github.com/docker/build-push-action - - name: Build and push 'dspace-dependencies' image - id: docker_build_deps - uses: docker/build-push-action@v4 - with: - context: . - file: ./Dockerfile.dependencies - platforms: ${{ env.PLATFORMS }} - # For pull requests, we run the Docker build (to ensure no PR changes break the build), - # but we ONLY do an image push to DockerHub if it's NOT a PR - push: ${{ github.event_name != 'pull_request' }} - # Use tags / labels provided by 'docker/metadata-action' above - tags: ${{ steps.meta_build_deps.outputs.tags }} - labels: ${{ steps.meta_build_deps.outputs.labels }} - - ####################################### - # Build/Push the 'dspace/dspace' image - ####################################### - dspace: - # Ensure this job never runs on forked repos. It's only executed for 'dspace/dspace' - if: github.repository == 'dspace/dspace' - # Must run after 'dspace-dependencies' job above - needs: dspace-dependencies - runs-on: ubuntu-latest - - steps: - # https://github.com/actions/checkout - - name: Checkout codebase - uses: actions/checkout@v3 - - # https://github.com/docker/setup-buildx-action - - name: Setup Docker Buildx - uses: docker/setup-buildx-action@v2 - - # https://github.com/docker/setup-qemu-action - - name: Set up QEMU emulation to build for multiple architectures - uses: docker/setup-qemu-action@v2 - - # https://github.com/docker/login-action - - name: Login to DockerHub - # Only login if not a PR, as PRs only trigger a Docker build and not a push - if: github.event_name != 'pull_request' - uses: docker/login-action@v2 - with: - username: ${{ secrets.DOCKER_USERNAME }} - password: ${{ secrets.DOCKER_ACCESS_TOKEN }} - - # Get Metadata for docker_build step below - - name: Sync metadata (tags, labels) from GitHub to Docker for 'dspace' image - id: meta_build - uses: docker/metadata-action@v4 - with: - images: dspace/dspace - tags: ${{ env.IMAGE_TAGS }} - flavor: ${{ env.TAGS_FLAVOR }} - - - name: Build and push 'dspace' image - id: docker_build - uses: docker/build-push-action@v4 - with: - context: . - file: ./Dockerfile - platforms: ${{ env.PLATFORMS }} - # For pull requests, we run the Docker build (to ensure no PR changes break the build), - # but we ONLY do an image push to DockerHub if it's NOT a PR - push: ${{ github.event_name != 'pull_request' }} - # Use tags / labels provided by 'docker/metadata-action' above - tags: ${{ steps.meta_build.outputs.tags }} - labels: ${{ steps.meta_build.outputs.labels }} - - ############################################################# - # Build/Push the 'dspace/dspace' image ('-test' tag) - ############################################################# - dspace-test: - # Ensure this job never runs on forked repos. It's only executed for 'dspace/dspace' - if: github.repository == 'dspace/dspace' - # Must run after 'dspace-dependencies' job above - needs: dspace-dependencies - runs-on: ubuntu-latest - - steps: - # https://github.com/actions/checkout - - name: Checkout codebase - uses: actions/checkout@v3 - - # https://github.com/docker/setup-buildx-action - - name: Setup Docker Buildx - uses: docker/setup-buildx-action@v2 - - # https://github.com/docker/setup-qemu-action - - name: Set up QEMU emulation to build for multiple architectures - uses: docker/setup-qemu-action@v2 - - # https://github.com/docker/login-action - - name: Login to DockerHub - # Only login if not a PR, as PRs only trigger a Docker build and not a push - if: github.event_name != 'pull_request' - uses: docker/login-action@v2 - with: - username: ${{ secrets.DOCKER_USERNAME }} - password: ${{ secrets.DOCKER_ACCESS_TOKEN }} - - # Get Metadata for docker_build_test step below - - name: Sync metadata (tags, labels) from GitHub to Docker for 'dspace-test' image - id: meta_build_test - uses: docker/metadata-action@v4 - with: - images: dspace/dspace - tags: ${{ env.IMAGE_TAGS }} - # As this is a test/development image, its tags are all suffixed with "-test". Otherwise, it uses the same - # tagging logic as the primary 'dspace/dspace' image above. - flavor: ${{ env.TAGS_FLAVOR }} - suffix=-test - - - name: Build and push 'dspace-test' image - id: docker_build_test - uses: docker/build-push-action@v4 - with: - context: . - file: ./Dockerfile.test - platforms: ${{ env.PLATFORMS }} - # For pull requests, we run the Docker build (to ensure no PR changes break the build), - # but we ONLY do an image push to DockerHub if it's NOT a PR - push: ${{ github.event_name != 'pull_request' }} - # Use tags / labels provided by 'docker/metadata-action' above - tags: ${{ steps.meta_build_test.outputs.tags }} - labels: ${{ steps.meta_build_test.outputs.labels }} - - ########################################### - # Build/Push the 'dspace/dspace-cli' image - ########################################### - dspace-cli: - # Ensure this job never runs on forked repos. It's only executed for 'dspace/dspace' - if: github.repository == 'dspace/dspace' - # Must run after 'dspace-dependencies' job above - needs: dspace-dependencies - runs-on: ubuntu-latest - - steps: - # https://github.com/actions/checkout - - name: Checkout codebase - uses: actions/checkout@v3 - - # https://github.com/docker/setup-buildx-action - - name: Setup Docker Buildx - uses: docker/setup-buildx-action@v2 - - # https://github.com/docker/setup-qemu-action - - name: Set up QEMU emulation to build for multiple architectures - uses: docker/setup-qemu-action@v2 - - # https://github.com/docker/login-action - - name: Login to DockerHub - # Only login if not a PR, as PRs only trigger a Docker build and not a push - if: github.event_name != 'pull_request' - uses: docker/login-action@v2 - with: - username: ${{ secrets.DOCKER_USERNAME }} - password: ${{ secrets.DOCKER_ACCESS_TOKEN }} - - # Get Metadata for docker_build_test step below - - name: Sync metadata (tags, labels) from GitHub to Docker for 'dspace-cli' image - id: meta_build_cli - uses: docker/metadata-action@v4 - with: - images: dspace/dspace-cli - tags: ${{ env.IMAGE_TAGS }} - flavor: ${{ env.TAGS_FLAVOR }} - - - name: Build and push 'dspace-cli' image - id: docker_build_cli - uses: docker/build-push-action@v4 - with: - context: . - file: ./Dockerfile.cli - platforms: ${{ env.PLATFORMS }} - # For pull requests, we run the Docker build (to ensure no PR changes break the build), - # but we ONLY do an image push to DockerHub if it's NOT a PR - push: ${{ github.event_name != 'pull_request' }} - # Use tags / labels provided by 'docker/metadata-action' above - tags: ${{ steps.meta_build_cli.outputs.tags }} - labels: ${{ steps.meta_build_cli.outputs.labels }} - - ########################################### - # Build/Push the 'dspace/dspace-solr' image - ########################################### - dspace-solr: - # Ensure this job never runs on forked repos. It's only executed for 'dspace/dspace' - if: github.repository == 'dspace/dspace' - runs-on: ubuntu-latest - - steps: - # https://github.com/actions/checkout - - name: Checkout codebase - uses: actions/checkout@v3 - - # https://github.com/docker/setup-buildx-action - - name: Setup Docker Buildx - uses: docker/setup-buildx-action@v2 - - # https://github.com/docker/setup-qemu-action - - name: Set up QEMU emulation to build for multiple architectures - uses: docker/setup-qemu-action@v2 - - # https://github.com/docker/login-action - - name: Login to DockerHub - # Only login if not a PR, as PRs only trigger a Docker build and not a push - if: github.event_name != 'pull_request' - uses: docker/login-action@v2 - with: - username: ${{ secrets.DOCKER_USERNAME }} - password: ${{ secrets.DOCKER_ACCESS_TOKEN }} - - # Get Metadata for docker_build_solr step below - - name: Sync metadata (tags, labels) from GitHub to Docker for 'dspace-solr' image - id: meta_build_solr - uses: docker/metadata-action@v4 - with: - images: dspace/dspace-solr - tags: ${{ env.IMAGE_TAGS }} - flavor: ${{ env.TAGS_FLAVOR }} - - - name: Build and push 'dspace-solr' image - id: docker_build_solr - uses: docker/build-push-action@v4 - with: - context: . - file: ./dspace/src/main/docker/dspace-solr/Dockerfile - platforms: ${{ env.PLATFORMS }} - # For pull requests, we run the Docker build (to ensure no PR changes break the build), - # but we ONLY do an image push to DockerHub if it's NOT a PR - push: ${{ github.event_name != 'pull_request' }} - # Use tags / labels provided by 'docker/metadata-action' above - tags: ${{ steps.meta_build_solr.outputs.tags }} - labels: ${{ steps.meta_build_solr.outputs.labels }} - - ########################################################### - # Build/Push the 'dspace/dspace-postgres-pgcrypto' image - ########################################################### - dspace-postgres-pgcrypto: - # Ensure this job never runs on forked repos. It's only executed for 'dspace/dspace' - if: github.repository == 'dspace/dspace' - runs-on: ubuntu-latest - - steps: - # https://github.com/actions/checkout - - name: Checkout codebase - uses: actions/checkout@v3 - - # https://github.com/docker/setup-buildx-action - - name: Setup Docker Buildx - uses: docker/setup-buildx-action@v2 - - # https://github.com/docker/setup-qemu-action - - name: Set up QEMU emulation to build for multiple architectures - uses: docker/setup-qemu-action@v2 - - # https://github.com/docker/login-action - - name: Login to DockerHub - # Only login if not a PR, as PRs only trigger a Docker build and not a push - if: github.event_name != 'pull_request' - uses: docker/login-action@v2 - with: - username: ${{ secrets.DOCKER_USERNAME }} - password: ${{ secrets.DOCKER_ACCESS_TOKEN }} - - # Get Metadata for docker_build_postgres step below - - name: Sync metadata (tags, labels) from GitHub to Docker for 'dspace-postgres-pgcrypto' image - id: meta_build_postgres - uses: docker/metadata-action@v4 - with: - images: dspace/dspace-postgres-pgcrypto - tags: ${{ env.IMAGE_TAGS }} - flavor: ${{ env.TAGS_FLAVOR }} - - - name: Build and push 'dspace-postgres-pgcrypto' image - id: docker_build_postgres - uses: docker/build-push-action@v4 - with: - # Must build out of subdirectory to have access to install script for pgcrypto - context: ./dspace/src/main/docker/dspace-postgres-pgcrypto/ - dockerfile: Dockerfile - platforms: ${{ env.PLATFORMS }} - # For pull requests, we run the Docker build (to ensure no PR changes break the build), - # but we ONLY do an image push to DockerHub if it's NOT a PR - push: ${{ github.event_name != 'pull_request' }} - # Use tags / labels provided by 'docker/metadata-action' above - tags: ${{ steps.meta_build_postgres.outputs.tags }} - labels: ${{ steps.meta_build_postgres.outputs.labels }} - - ######################################################################## - # Build/Push the 'dspace/dspace-postgres-pgcrypto' image (-loadsql tag) - ######################################################################## - dspace-postgres-pgcrypto-loadsql: - # Ensure this job never runs on forked repos. It's only executed for 'dspace/dspace' - if: github.repository == 'dspace/dspace' - runs-on: ubuntu-latest - - steps: - # https://github.com/actions/checkout - - name: Checkout codebase - uses: actions/checkout@v3 - - # https://github.com/docker/setup-buildx-action - - name: Setup Docker Buildx - uses: docker/setup-buildx-action@v2 - - # https://github.com/docker/setup-qemu-action - - name: Set up QEMU emulation to build for multiple architectures - uses: docker/setup-qemu-action@v2 - - # https://github.com/docker/login-action - - name: Login to DockerHub - # Only login if not a PR, as PRs only trigger a Docker build and not a push - if: github.event_name != 'pull_request' - uses: docker/login-action@v2 - with: - username: ${{ secrets.DOCKER_USERNAME }} - password: ${{ secrets.DOCKER_ACCESS_TOKEN }} - - # Get Metadata for docker_build_postgres_loadsql step below - - name: Sync metadata (tags, labels) from GitHub to Docker for 'dspace-postgres-pgcrypto-loadsql' image - id: meta_build_postgres_loadsql - uses: docker/metadata-action@v4 - with: - images: dspace/dspace-postgres-pgcrypto - tags: ${{ env.IMAGE_TAGS }} - # Suffix all tags with "-loadsql". Otherwise, it uses the same - # tagging logic as the primary 'dspace/dspace-postgres-pgcrypto' image above. - flavor: ${{ env.TAGS_FLAVOR }} - suffix=-loadsql - - - name: Build and push 'dspace-postgres-pgcrypto-loadsql' image - id: docker_build_postgres_loadsql - uses: docker/build-push-action@v4 - with: - # Must build out of subdirectory to have access to install script for pgcrypto - context: ./dspace/src/main/docker/dspace-postgres-pgcrypto-curl/ - dockerfile: Dockerfile - platforms: ${{ env.PLATFORMS }} - # For pull requests, we run the Docker build (to ensure no PR changes break the build), - # but we ONLY do an image push to DockerHub if it's NOT a PR - push: ${{ github.event_name != 'pull_request' }} - # Use tags / labels provided by 'docker/metadata-action' above - tags: ${{ steps.meta_build_postgres_loadsql.outputs.tags }} - labels: ${{ steps.meta_build_postgres_loadsql.outputs.labels }} -======= ######################################################################## # Build/Push the 'dspace/dspace-postgres-pgcrypto' image (-loadsql tag) ######################################################################## @@ -495,5 +147,4 @@ jobs: tags_flavor: suffix=-loadsql secrets: DOCKER_USERNAME: ${{ secrets.DOCKER_USERNAME }} - DOCKER_ACCESS_TOKEN: ${{ secrets.DOCKER_ACCESS_TOKEN }} ->>>>>>> refs/remotes/githubDSpace/main + DOCKER_ACCESS_TOKEN: ${{ secrets.DOCKER_ACCESS_TOKEN }} \ No newline at end of file diff --git a/.github/workflows/issue_opened.yml b/.github/workflows/issue_opened.yml index b4436dca3aad..0a35a6a95044 100644 --- a/.github/workflows/issue_opened.yml +++ b/.github/workflows/issue_opened.yml @@ -16,7 +16,7 @@ jobs: # Only add to project board if issue is flagged as "needs triage" or has no labels # NOTE: By default we flag new issues as "needs triage" in our issue template if: (contains(github.event.issue.labels.*.name, 'needs triage') || join(github.event.issue.labels.*.name) == '') - uses: actions/add-to-project@v0.5.0 + uses: actions/add-to-project@v1.0.0 # Note, the authentication token below is an ORG level Secret. # It must be created/recreated manually via a personal access token with admin:org, project, public_repo permissions # See: https://docs.github.com/en/actions/configuring-and-managing-workflows/authenticating-with-the-github_token#permissions-for-the-github_token diff --git a/.github/workflows/reusable-docker-build.yml b/.github/workflows/reusable-docker-build.yml index aa8327f4d11b..019dab51eddb 100644 --- a/.github/workflows/reusable-docker-build.yml +++ b/.github/workflows/reusable-docker-build.yml @@ -68,9 +68,9 @@ env: # See "Redeploy" steps below for more details. REDEPLOY_SANDBOX_URL: ${{ secrets.REDEPLOY_SANDBOX_URL }} REDEPLOY_DEMO_URL: ${{ secrets.REDEPLOY_DEMO_URL }} - # Current DSpace maintenance branch (and architecture) which is deployed to demo.dspace.org / sandbox.dspace.org - # (NOTE: No deployment branch specified for sandbox.dspace.org as it uses the default_branch) + # Current DSpace branches (and architecture) which are deployed to demo.dspace.org & sandbox.dspace.org respectively DEPLOY_DEMO_BRANCH: 'dspace-7_x' + DEPLOY_SANDBOX_BRANCH: 'main' DEPLOY_ARCH: 'linux/amd64' jobs: @@ -93,6 +93,14 @@ jobs: runs-on: ${{ matrix.os }} steps: + # This step converts the slashes in the "arch" matrix values above into dashes & saves to env.ARCH_NAME + # E.g. "linux/amd64" becomes "linux-amd64" + # This is necessary because all upload artifacts CANNOT have special chars (like slashes) + - name: Prepare + run: | + platform=${{ matrix.arch }} + echo "ARCH_NAME=${platform//\//-}" >> $GITHUB_ENV + # https://github.com/actions/checkout - name: Checkout codebase uses: actions/checkout@v4 @@ -152,9 +160,9 @@ jobs: # Upload digest to an artifact, so that it can be used in manifest below - name: Upload Docker build digest to artifact if: ${{ ! matrix.isPr }} - uses: actions/upload-artifact@v3 + uses: actions/upload-artifact@v4 with: - name: digests-${{ inputs.build_id }} + name: digests-${{ inputs.build_id }}-${{ env.ARCH_NAME }} path: /tmp/digests/* if-no-files-found: error retention-days: 1 @@ -166,13 +174,13 @@ jobs: !matrix.isPR && env.REDEPLOY_SANDBOX_URL != '' && matrix.arch == env.DEPLOY_ARCH && - github.ref_name == github.event.repository.default_branch + github.ref_name == env.DEPLOY_SANDBOX_BRANCH run: | curl -X POST $REDEPLOY_SANDBOX_URL # If this build is NOT a PR and passed in a REDEPLOY_DEMO_URL secret, # Then redeploy https://demo.dspace.org if this build is for our deployment architecture and demo branch. - - name: Redeploy demo.dspace.org (based on maintenace branch) + - name: Redeploy demo.dspace.org (based on maintenance branch) if: | !matrix.isPR && env.REDEPLOY_DEMO_URL != '' && @@ -192,10 +200,12 @@ jobs: - docker-build steps: - name: Download Docker build digests - uses: actions/download-artifact@v3 + uses: actions/download-artifact@v4 with: - name: digests-${{ inputs.build_id }} path: /tmp/digests + # Download digests for both AMD64 and ARM64 into same directory + pattern: digests-${{ inputs.build_id }}-* + merge-multiple: true - name: Set up Docker Buildx uses: docker/setup-buildx-action@v3 diff --git a/.lgtm.yml b/.lgtm.yml deleted file mode 100644 index 132de8a6de5a..000000000000 --- a/.lgtm.yml +++ /dev/null @@ -1,9 +0,0 @@ -# LGTM Settings (https://lgtm.com/) -# For reference, see https://lgtm.com/help/lgtm/lgtm.yml-configuration-file -# or template at https://lgtm.com/static/downloads/lgtm.template.yml - -extraction: - java: - index: - # Specify the Java version required to build the project - java_version: 11 diff --git a/Dockerfile b/Dockerfile index ff113770209c..096fea313cde 100644 --- a/Dockerfile +++ b/Dockerfile @@ -3,9 +3,9 @@ # # - note: default tag for branch: dspace/dspace: dspace/dspace:dspace-8_x -# This Dockerfile uses JDK11 by default, but has also been tested with JDK17. -# To build with JDK17, use "--build-arg JDK_VERSION=17" -ARG JDK_VERSION=11 +# This Dockerfile uses JDK17 by default. +# To build with other versions, use "--build-arg JDK_VERSION=[value]" +ARG JDK_VERSION=17 ARG DSPACE_VERSION=latest # Step 1 - Run Maven Build @@ -27,9 +27,11 @@ ENV MAVEN_FLAGS="-P-test-environment -Denforcer.skip=true -Dcheckstyle.skip=true RUN mvn --no-transfer-progress package ${MAVEN_FLAGS} && \ mv /app/dspace/target/${TARGET_DIR}/* /install && \ mvn clean +# Remove the server webapp to keep image small. +RUN rm -rf /install/webapps/server/ # Step 2 - Run Ant Deploy -FROM openjdk:${JDK_VERSION}-slim as ant_build +FROM eclipse-temurin:${JDK_VERSION} as ant_build ARG TARGET_DIR=dspace-installer # COPY the /install directory from 'build' container to /dspace-src in this container COPY --from=build /install /dspace-src @@ -49,23 +51,16 @@ RUN mkdir $ANT_HOME && \ # Run necessary 'ant' deploy scripts RUN ant init_installation update_configs update_code update_webapps -# Step 3 - Run tomcat -# Create a new tomcat image that does not retain the the build directory contents -FROM tomcat:9-jdk${JDK_VERSION} +# Step 3 - Start up DSpace via Runnable JAR +FROM eclipse-temurin:${JDK_VERSION} # NOTE: DSPACE_INSTALL must align with the "dspace.dir" default configuration. ENV DSPACE_INSTALL=/dspace # Copy the /dspace directory from 'ant_build' container to /dspace in this container COPY --from=ant_build /dspace $DSPACE_INSTALL -# Expose Tomcat port and AJP port -EXPOSE 8080 8009 +WORKDIR $DSPACE_INSTALL +# Expose Tomcat port +EXPOSE 8080 # Give java extra memory (2GB) ENV JAVA_OPTS=-Xmx2000m - -# Link the DSpace 'server' webapp into Tomcat's webapps directory. -# This ensures that when we start Tomcat, it runs from /server path (e.g. http://localhost:8080/server/) -RUN ln -s $DSPACE_INSTALL/webapps/server /usr/local/tomcat/webapps/server -# If you wish to run "server" webapp off the ROOT path, then comment out the above RUN, and uncomment the below RUN. -# You also MUST update the 'dspace.server.url' configuration to match. -# Please note that server webapp should only run on one path at a time. -#RUN mv /usr/local/tomcat/webapps/ROOT /usr/local/tomcat/webapps/ROOT.bk && \ -# ln -s $DSPACE_INSTALL/webapps/server /usr/local/tomcat/webapps/ROOT +# On startup, run DSpace Runnable JAR +ENTRYPOINT ["java", "-jar", "webapps/server-boot.jar", "--dspace.dir=$DSPACE_INSTALL"] diff --git a/Dockerfile.cli b/Dockerfile.cli index d54978375e54..7dd35c9651d9 100644 --- a/Dockerfile.cli +++ b/Dockerfile.cli @@ -3,9 +3,9 @@ # # - note: default tag for branch: dspace/dspace-cli: dspace/dspace-cli:latest -# This Dockerfile uses JDK11 by default, but has also been tested with JDK17. -# To build with JDK17, use "--build-arg JDK_VERSION=17" -ARG JDK_VERSION=11 +# This Dockerfile uses JDK17 by default. +# To build with other versions, use "--build-arg JDK_VERSION=[value]" +ARG JDK_VERSION=17 ARG DSPACE_VERSION=latest # Step 1 - Run Maven Build @@ -25,7 +25,7 @@ RUN mvn --no-transfer-progress package && \ mvn clean # Step 2 - Run Ant Deploy -FROM openjdk:${JDK_VERSION}-slim as ant_build +FROM eclipse-temurin:${JDK_VERSION} as ant_build ARG TARGET_DIR=dspace-installer # COPY the /install directory from 'build' container to /dspace-src in this container COPY --from=build /install /dspace-src @@ -34,9 +34,9 @@ WORKDIR /dspace-src ENV ANT_VERSION 1.10.13 ENV ANT_HOME /tmp/ant-$ANT_VERSION ENV PATH $ANT_HOME/bin:$PATH -# Need wget to install ant, and unzip for managing AIPs +# Need wget to install ant RUN apt-get update \ - && apt-get install -y --no-install-recommends wget unzip \ + && apt-get install -y --no-install-recommends wget \ && apt-get purge -y --auto-remove \ && rm -rf /var/lib/apt/lists/* # Download and install 'ant' @@ -46,10 +46,15 @@ RUN mkdir $ANT_HOME && \ RUN ant init_installation update_configs update_code # Step 3 - Run jdk -FROM openjdk:${JDK_VERSION} +FROM eclipse-temurin:${JDK_VERSION} # NOTE: DSPACE_INSTALL must align with the "dspace.dir" default configuration. ENV DSPACE_INSTALL=/dspace # Copy the /dspace directory from 'ant_build' container to /dspace in this container COPY --from=ant_build /dspace $DSPACE_INSTALL # Give java extra memory (1GB) ENV JAVA_OPTS=-Xmx1000m +# Install unzip for AIPs +RUN apt-get update \ + && apt-get install -y --no-install-recommends unzip \ + && apt-get purge -y --auto-remove \ + && rm -rf /var/lib/apt/lists/* diff --git a/Dockerfile.dependencies b/Dockerfile.dependencies index 6f72ab058536..2ca4d3040e98 100644 --- a/Dockerfile.dependencies +++ b/Dockerfile.dependencies @@ -2,12 +2,12 @@ # The purpose of this image is to make the build for dspace/dspace run faster # -# This Dockerfile uses JDK11 by default, but has also been tested with JDK17. -# To build with JDK17, use "--build-arg JDK_VERSION=17" -ARG JDK_VERSION=11 +# This Dockerfile uses JDK17 by default. +# To build with other versions, use "--build-arg JDK_VERSION=[value]" +ARG JDK_VERSION=17 # Step 1 - Run Maven Build -FROM maven:3-openjdk-${JDK_VERSION}-slim as build +FROM maven:3-eclipse-temurin-${JDK_VERSION} as build ARG TARGET_DIR=dspace-installer WORKDIR /app # Create the 'dspace' user account & home directory diff --git a/Dockerfile.test b/Dockerfile.test index 6fcc4eda6be1..cdfd5e83af5f 100644 --- a/Dockerfile.test +++ b/Dockerfile.test @@ -5,9 +5,9 @@ # # This image is meant for TESTING/DEVELOPMENT ONLY as it deploys the old v6 REST API under HTTP (not HTTPS) -# This Dockerfile uses JDK11 by default, but has also been tested with JDK17. -# To build with JDK17, use "--build-arg JDK_VERSION=17" -ARG JDK_VERSION=11 +# This Dockerfile uses JDK17 by default. +# To build with other versions, use "--build-arg JDK_VERSION=[value]" +ARG JDK_VERSION=17 ARG DSPACE_VERSION=latest # Step 1 - Run Maven Build @@ -26,9 +26,11 @@ ADD --chown=dspace . /app/ RUN mvn --no-transfer-progress package && \ mv /app/dspace/target/${TARGET_DIR}/* /install && \ mvn clean +# Remove the server webapp to keep image small. Rename runnable JAR to server-boot.jar. +RUN rm -rf /install/webapps/server/ # Step 2 - Run Ant Deploy -FROM openjdk:${JDK_VERSION}-slim as ant_build +FROM eclipse-temurin:${JDK_VERSION} as ant_build ARG TARGET_DIR=dspace-installer # COPY the /install directory from 'build' container to /dspace-src in this container COPY --from=build /install /dspace-src @@ -48,29 +50,18 @@ RUN mkdir $ANT_HOME && \ # Run necessary 'ant' deploy scripts RUN ant init_installation update_configs update_code update_webapps -# Step 3 - Run tomcat -# Create a new tomcat image that does not retain the the build directory contents -FROM tomcat:9-jdk${JDK_VERSION} +# Step 3 - Start up DSpace via Runnable JAR +FROM eclipse-temurin:${JDK_VERSION} +# NOTE: DSPACE_INSTALL must align with the "dspace.dir" default configuration. ENV DSPACE_INSTALL=/dspace -ENV TOMCAT_INSTALL=/usr/local/tomcat -# Copy the /dspace directory from 'ant_build' containger to /dspace in this container +# Copy the /dspace directory from 'ant_build' container to /dspace in this container COPY --from=ant_build /dspace $DSPACE_INSTALL -# Enable the AJP connector in Tomcat's server.xml -# NOTE: secretRequired="false" should only be used when AJP is NOT accessible from an external network. But, secretRequired="true" isn't supported by mod_proxy_ajp until Apache 2.5 -RUN sed -i '/Service name="Catalina".*/a \\n ' $TOMCAT_INSTALL/conf/server.xml -# Expose Tomcat port and AJP port -EXPOSE 8080 8009 8000 +WORKDIR $DSPACE_INSTALL +# Expose Tomcat port and debugging port +EXPOSE 8080 8000 # Give java extra memory (2GB) ENV JAVA_OPTS=-Xmx2000m # Set up debugging ENV CATALINA_OPTS=-Xrunjdwp:transport=dt_socket,server=y,suspend=n,address=*:8000 - -# Link the DSpace 'server' webapp into Tomcat's webapps directory. -# This ensures that when we start Tomcat, it runs from /server path (e.g. http://localhost:8080/server/) -RUN ln -s $DSPACE_INSTALL/webapps/server /usr/local/tomcat/webapps/server -# If you wish to run "server" webapp off the ROOT path, then comment out the above RUN, and uncomment the below RUN. -# You also MUST update the 'dspace.server.url' configuration to match. -# Please note that server webapp should only run on one path at a time. -#RUN mv /usr/local/tomcat/webapps/ROOT /usr/local/tomcat/webapps/ROOT.bk && \ -# ln -s $DSPACE_INSTALL/webapps/server /usr/local/tomcat/webapps/ROOT - +# On startup, run DSpace Runnable JAR +ENTRYPOINT ["java", "-jar", "webapps/server-boot.jar", "--dspace.dir=$DSPACE_INSTALL"] diff --git a/LICENSES_THIRD_PARTY b/LICENSES_THIRD_PARTY index e494c80c5d6e..d7e928147c89 100644 --- a/LICENSES_THIRD_PARTY +++ b/LICENSES_THIRD_PARTY @@ -25,25 +25,29 @@ https://wiki.lyrasis.org/display/DSPACE/Code+Contribution+Guidelines * AWS Java SDK for AWS KMS (com.amazonaws:aws-java-sdk-kms:1.12.261 - https://aws.amazon.com/sdkforjava) * AWS Java SDK for Amazon S3 (com.amazonaws:aws-java-sdk-s3:1.12.261 - https://aws.amazon.com/sdkforjava) * JMES Path Query library (com.amazonaws:jmespath-java:1.12.261 - https://aws.amazon.com/sdkforjava) + * Titanium JSON-LD 1.1 (JRE11) (com.apicatalog:titanium-json-ld:1.3.2 - https://github.com/filip26/titanium-json-ld) * HPPC Collections (com.carrotsearch:hppc:0.8.1 - http://labs.carrotsearch.com/hppc.html/hppc) - * com.drewnoakes:metadata-extractor (com.drewnoakes:metadata-extractor:2.18.0 - https://drewnoakes.com/code/exif/) + * com.drewnoakes:metadata-extractor (com.drewnoakes:metadata-extractor:2.19.0 - https://drewnoakes.com/code/exif/) * parso (com.epam:parso:2.0.14 - https://github.com/epam/parso) - * Esri Geometry API for Java (com.esri.geometry:esri-geometry-api:2.2.0 - https://github.com/Esri/geometry-api-java) - * ClassMate (com.fasterxml:classmate:1.3.0 - http://github.com/cowtowncoder/java-classmate) - * Jackson-annotations (com.fasterxml.jackson.core:jackson-annotations:2.13.4 - http://github.com/FasterXML/jackson) - * Jackson-core (com.fasterxml.jackson.core:jackson-core:2.13.4 - https://github.com/FasterXML/jackson-core) - * jackson-databind (com.fasterxml.jackson.core:jackson-databind:2.13.4.2 - http://github.com/FasterXML/jackson) + * ClassMate (com.fasterxml:classmate:1.6.0 - https://github.com/FasterXML/java-classmate) + * Jackson-annotations (com.fasterxml.jackson.core:jackson-annotations:2.16.0 - https://github.com/FasterXML/jackson) + * Jackson-core (com.fasterxml.jackson.core:jackson-core:2.16.0 - https://github.com/FasterXML/jackson-core) + * jackson-databind (com.fasterxml.jackson.core:jackson-databind:2.16.0 - https://github.com/FasterXML/jackson) * Jackson dataformat: CBOR (com.fasterxml.jackson.dataformat:jackson-dataformat-cbor:2.12.6 - http://github.com/FasterXML/jackson-dataformats-binary) - * Jackson dataformat: Smile (com.fasterxml.jackson.dataformat:jackson-dataformat-smile:2.13.3 - http://github.com/FasterXML/jackson-dataformats-binary) - * Jackson-dataformat-YAML (com.fasterxml.jackson.dataformat:jackson-dataformat-yaml:2.11.1 - https://github.com/FasterXML/jackson-dataformats-text) - * Jackson datatype: jdk8 (com.fasterxml.jackson.datatype:jackson-datatype-jdk8:2.13.5 - https://github.com/FasterXML/jackson-modules-java8/jackson-datatype-jdk8) - * Jackson datatype: JSR310 (com.fasterxml.jackson.datatype:jackson-datatype-jsr310:2.11.1 - https://github.com/FasterXML/jackson-modules-java8/jackson-datatype-jsr310) - * Jackson datatype: JSR310 (com.fasterxml.jackson.datatype:jackson-datatype-jsr310:2.13.5 - https://github.com/FasterXML/jackson-modules-java8/jackson-datatype-jsr310) - * Jackson-module-parameter-names (com.fasterxml.jackson.module:jackson-module-parameter-names:2.13.5 - https://github.com/FasterXML/jackson-modules-java8/jackson-module-parameter-names) + * Jackson dataformat: Smile (com.fasterxml.jackson.dataformat:jackson-dataformat-smile:2.15.2 - https://github.com/FasterXML/jackson-dataformats-binary) + * Jackson-dataformat-TOML (com.fasterxml.jackson.dataformat:jackson-dataformat-toml:2.15.2 - https://github.com/FasterXML/jackson-dataformats-text) + * Jackson-dataformat-YAML (com.fasterxml.jackson.dataformat:jackson-dataformat-yaml:2.16.2 - https://github.com/FasterXML/jackson-dataformats-text) + * Jackson datatype: jdk8 (com.fasterxml.jackson.datatype:jackson-datatype-jdk8:2.15.4 - https://github.com/FasterXML/jackson-modules-java8/jackson-datatype-jdk8) + * Jackson datatype: JSR310 (com.fasterxml.jackson.datatype:jackson-datatype-jsr310:2.16.0 - https://github.com/FasterXML/jackson-modules-java8/jackson-datatype-jsr310) + * Jackson Jakarta-RS: base (com.fasterxml.jackson.jakarta.rs:jackson-jakarta-rs-base:2.16.2 - https://github.com/FasterXML/jackson-jakarta-rs-providers/jackson-jakarta-rs-base) + * Jackson Jakarta-RS: JSON (com.fasterxml.jackson.jakarta.rs:jackson-jakarta-rs-json-provider:2.16.2 - https://github.com/FasterXML/jackson-jakarta-rs-providers/jackson-jakarta-rs-json-provider) + * Jackson module: Jakarta XML Bind Annotations (jakarta.xml.bind) (com.fasterxml.jackson.module:jackson-module-jakarta-xmlbind-annotations:2.16.2 - https://github.com/FasterXML/jackson-modules-base) + * Jackson-module-parameter-names (com.fasterxml.jackson.module:jackson-module-parameter-names:2.15.4 - https://github.com/FasterXML/jackson-modules-java8/jackson-module-parameter-names) * Java UUID Generator (com.fasterxml.uuid:java-uuid-generator:4.0.1 - https://github.com/cowtowncoder/java-uuid-generator) - * Woodstox (com.fasterxml.woodstox:woodstox-core:6.2.4 - https://github.com/FasterXML/woodstox) - * zjsonpatch (com.flipkart.zjsonpatch:zjsonpatch:0.4.6 - https://github.com/flipkart-incubator/zjsonpatch/) - * Caffeine cache (com.github.ben-manes.caffeine:caffeine:2.9.2 - https://github.com/ben-manes/caffeine) + * Woodstox (com.fasterxml.woodstox:woodstox-core:6.5.1 - https://github.com/FasterXML/woodstox) + * zjsonpatch (com.flipkart.zjsonpatch:zjsonpatch:0.4.16 - https://github.com/flipkart-incubator/zjsonpatch/) + * Caffeine cache (com.github.ben-manes.caffeine:caffeine:2.9.3 - https://github.com/ben-manes/caffeine) + * Caffeine cache (com.github.ben-manes.caffeine:caffeine:3.1.6 - https://github.com/ben-manes/caffeine) * btf (com.github.java-json-tools:btf:1.3 - https://github.com/java-json-tools/btf) * jackson-coreutils (com.github.java-json-tools:jackson-coreutils:2.0 - https://github.com/java-json-tools/jackson-coreutils) * jackson-coreutils-equivalence (com.github.java-json-tools:jackson-coreutils-equivalence:1.0 - https://github.com/java-json-tools/jackson-coreutils) @@ -54,9 +58,9 @@ https://wiki.lyrasis.org/display/DSPACE/Code+Contribution+Guidelines * JCIP Annotations under Apache License (com.github.stephenc.jcip:jcip-annotations:1.0-1 - http://stephenc.github.com/jcip-annotations) * Google APIs Client Library for Java (com.google.api-client:google-api-client:1.23.0 - https://github.com/google/google-api-java-client/google-api-client) * Google Analytics API v3-rev145-1.23.0 (com.google.apis:google-api-services-analytics:v3-rev145-1.23.0 - http://nexus.sonatype.org/oss-repository-hosting.html/google-api-services-analytics) - * FindBugs-jsr305 (com.google.code.findbugs:jsr305:3.0.1 - http://findbugs.sourceforge.net/) - * Gson (com.google.code.gson:gson:2.9.0 - https://github.com/google/gson/gson) - * error-prone annotations (com.google.errorprone:error_prone_annotations:2.18.0 - https://errorprone.info/error_prone_annotations) + * FindBugs-jsr305 (com.google.code.findbugs:jsr305:3.0.2 - http://findbugs.sourceforge.net/) + * Gson (com.google.code.gson:gson:2.10.1 - https://github.com/google/gson/gson) + * error-prone annotations (com.google.errorprone:error_prone_annotations:2.10.0 - https://errorprone.info/error_prone_annotations) * Guava InternalFutureFailureAccess and InternalFutures (com.google.guava:failureaccess:1.0.1 - https://github.com/google/guava/failureaccess) * Guava: Google Core Libraries for Java (com.google.guava:guava:32.0.0-jre - https://github.com/google/guava) * Guava: Google Core Libraries for Java (JDK5 Backport) (com.google.guava:guava-jdk5:17.0 - http://code.google.com/p/guava-libraries/guava-jdk5) @@ -64,25 +68,24 @@ https://wiki.lyrasis.org/display/DSPACE/Code+Contribution+Guidelines * Google HTTP Client Library for Java (com.google.http-client:google-http-client:1.23.0 - https://github.com/google/google-http-java-client/google-http-client) * GSON extensions to the Google HTTP Client Library for Java. (com.google.http-client:google-http-client-gson:1.41.7 - https://github.com/googleapis/google-http-java-client/google-http-client-gson) * Jackson 2 extensions to the Google HTTP Client Library for Java. (com.google.http-client:google-http-client-jackson2:1.23.0 - https://github.com/google/google-http-java-client/google-http-client-jackson2) + * J2ObjC Annotations (com.google.j2objc:j2objc-annotations:1.3 - https://github.com/google/j2objc/) * J2ObjC Annotations (com.google.j2objc:j2objc-annotations:2.8 - https://github.com/google/j2objc/) * Google OAuth Client Library for Java (com.google.oauth-client:google-oauth-client:1.33.3 - https://github.com/googleapis/google-oauth-java-client/google-oauth-client) * ConcurrentLinkedHashMap (com.googlecode.concurrentlinkedhashmap:concurrentlinkedhashmap-lru:1.4.2 - http://code.google.com/p/concurrentlinkedhashmap) * libphonenumber (com.googlecode.libphonenumber:libphonenumber:8.11.1 - https://github.com/google/libphonenumber/) - * Jackcess (com.healthmarketscience.jackcess:jackcess:4.0.2 - https://jackcess.sourceforge.io) - * Jackcess Encrypt (com.healthmarketscience.jackcess:jackcess-encrypt:4.0.1 - http://jackcessencrypt.sf.net) - * project ':json-path' (com.jayway.jsonpath:json-path:2.6.0 - https://github.com/jayway/JsonPath) - * project ':json-path-assert' (com.jayway.jsonpath:json-path-assert:2.6.0 - https://github.com/jayway/JsonPath) + * Jackcess (com.healthmarketscience.jackcess:jackcess:4.0.5 - https://jackcess.sourceforge.io) + * Jackcess Encrypt (com.healthmarketscience.jackcess:jackcess-encrypt:4.0.2 - http://jackcessencrypt.sf.net) + * json-path (com.jayway.jsonpath:json-path:2.9.0 - https://github.com/jayway/JsonPath) + * json-path-assert (com.jayway.jsonpath:json-path-assert:2.9.0 - https://github.com/jayway/JsonPath) * Disruptor Framework (com.lmax:disruptor:3.4.2 - http://lmax-exchange.github.com/disruptor) - * builder-commons (com.lyncode:builder-commons:1.0.2 - http://nexus.sonatype.org/oss-repository-hosting.html/builder-commons) - * MaxMind DB Reader (com.maxmind.db:maxmind-db:1.2.2 - http://dev.maxmind.com/) - * MaxMind GeoIP2 API (com.maxmind.geoip2:geoip2:2.11.0 - http://dev.maxmind.com/geoip/geoip2/web-services) - * Nimbus JOSE+JWT (com.nimbusds:nimbus-jose-jwt:7.9 - https://bitbucket.org/connect2id/nimbus-jose-jwt) - * opencsv (com.opencsv:opencsv:5.6 - http://opencsv.sf.net) + * MaxMind DB Reader (com.maxmind.db:maxmind-db:2.1.0 - http://dev.maxmind.com/) + * MaxMind GeoIP2 API (com.maxmind.geoip2:geoip2:2.17.0 - https://dev.maxmind.com/geoip?lang=en) + * Nimbus JOSE+JWT (com.nimbusds:nimbus-jose-jwt:9.37.3 - https://bitbucket.org/connect2id/nimbus-jose-jwt) + * opencsv (com.opencsv:opencsv:5.9 - http://opencsv.sf.net) * java-libpst (com.pff:java-libpst:0.9.3 - https://github.com/rjohnsondev/java-libpst) * rome (com.rometools:rome:1.19.0 - http://rometools.com/rome) * rome-modules (com.rometools:rome-modules:1.19.0 - http://rometools.com/rome-modules) * rome-utils (com.rometools:rome-utils:1.19.0 - http://rometools.com/rome-utils) - * fastinfoset (com.sun.xml.fastinfoset:FastInfoset:1.2.15 - http://fi.java.net) * T-Digest (com.tdunning:t-digest:3.1 - https://github.com/tdunning/t-digest) * config (com.typesafe:config:1.3.3 - https://github.com/lightbend/config) * ssl-config-core (com.typesafe:ssl-config-core_2.13:0.3.8 - https://github.com/lightbend/ssl-config) @@ -94,240 +97,282 @@ https://wiki.lyrasis.org/display/DSPACE/Code+Contribution+Guidelines * akka-stream (com.typesafe.akka:akka-stream_2.13:2.5.31 - https://akka.io/) * scala-logging (com.typesafe.scala-logging:scala-logging_2.13:3.9.2 - https://github.com/lightbend/scala-logging) * JSON library from Android SDK (com.vaadin.external.google:android-json:0.0.20131108.vaadin1 - http://developer.android.com/sdk) - * SparseBitSet (com.zaxxer:SparseBitSet:1.2 - https://github.com/brettwooldridge/SparseBitSet) + * SparseBitSet (com.zaxxer:SparseBitSet:1.3 - https://github.com/brettwooldridge/SparseBitSet) * Apache Commons BeanUtils (commons-beanutils:commons-beanutils:1.9.4 - https://commons.apache.org/proper/commons-beanutils/) - * Apache Commons CLI (commons-cli:commons-cli:1.4 - http://commons.apache.org/proper/commons-cli/) - * Apache Commons Codec (commons-codec:commons-codec:1.10 - http://commons.apache.org/proper/commons-codec/) + * Apache Commons CLI (commons-cli:commons-cli:1.6.0 - https://commons.apache.org/proper/commons-cli/) + * Apache Commons Codec (commons-codec:commons-codec:1.16.0 - https://commons.apache.org/proper/commons-codec/) * Apache Commons Collections (commons-collections:commons-collections:3.2.2 - http://commons.apache.org/collections/) - * Commons Digester (commons-digester:commons-digester:1.8.1 - http://commons.apache.org/digester/) - * Apache Commons FileUpload (commons-fileupload:commons-fileupload:1.5 - https://commons.apache.org/proper/commons-fileupload/) - * Apache Commons IO (commons-io:commons-io:2.7 - https://commons.apache.org/proper/commons-io/) + * Commons Digester (commons-digester:commons-digester:2.1 - http://commons.apache.org/digester/) + * Apache Commons IO (commons-io:commons-io:2.15.1 - https://commons.apache.org/proper/commons-io/) * Commons Lang (commons-lang:commons-lang:2.6 - http://commons.apache.org/lang/) - * Apache Commons Logging (commons-logging:commons-logging:1.2 - http://commons.apache.org/proper/commons-logging/) - * Apache Commons Validator (commons-validator:commons-validator:1.5.0 - http://commons.apache.org/proper/commons-validator/) + * Apache Commons Logging (commons-logging:commons-logging:1.3.0 - https://commons.apache.org/proper/commons-logging/) + * Apache Commons Validator (commons-validator:commons-validator:1.7 - http://commons.apache.org/proper/commons-validator/) * GeoJson POJOs for Jackson (de.grundid.opendatalab:geojson-jackson:1.14 - https://github.com/opendatalab-de/geojson-jackson) + * broker-client (eu.openaire:broker-client:1.1.2 - http://api.openaire.eu/broker/broker-client) * OpenAIRE Funders Model (eu.openaire:funders-model:2.0.0 - https://api.openaire.eu) * Metrics Core (io.dropwizard.metrics:metrics-core:4.1.5 - https://metrics.dropwizard.io/metrics-core) * Graphite Integration for Metrics (io.dropwizard.metrics:metrics-graphite:4.1.5 - https://metrics.dropwizard.io/metrics-graphite) * Metrics Integration for Jetty 9.3 and higher (io.dropwizard.metrics:metrics-jetty9:4.1.5 - https://metrics.dropwizard.io/metrics-jetty9) * Metrics Integration with JMX (io.dropwizard.metrics:metrics-jmx:4.1.5 - https://metrics.dropwizard.io/metrics-jmx) * JVM Integration for Metrics (io.dropwizard.metrics:metrics-jvm:4.1.5 - https://metrics.dropwizard.io/metrics-jvm) - * micrometer-core (io.micrometer:micrometer-core:1.9.11 - https://github.com/micrometer-metrics/micrometer) - * Netty/Buffer (io.netty:netty-buffer:4.1.68.Final - https://netty.io/netty-buffer/) - * Netty/Codec (io.netty:netty-codec:4.1.68.Final - https://netty.io/netty-codec/) + * SWORD v2 Common Server Library (forked) (io.gdcc:sword2-server:2.0.0 - https://github.com/gdcc/sword2-server) + * micrometer-commons (io.micrometer:micrometer-commons:1.12.6 - https://github.com/micrometer-metrics/micrometer) + * micrometer-core (io.micrometer:micrometer-core:1.12.6 - https://github.com/micrometer-metrics/micrometer) + * micrometer-jakarta9 (io.micrometer:micrometer-jakarta9:1.12.6 - https://github.com/micrometer-metrics/micrometer) + * micrometer-observation (io.micrometer:micrometer-observation:1.12.6 - https://github.com/micrometer-metrics/micrometer) + * Netty/Buffer (io.netty:netty-buffer:4.1.106.Final - https://netty.io/netty-buffer/) + * Netty/Buffer (io.netty:netty-buffer:4.1.99.Final - https://netty.io/netty-buffer/) + * Netty/Codec (io.netty:netty-codec:4.1.106.Final - https://netty.io/netty-codec/) + * Netty/Codec (io.netty:netty-codec:4.1.99.Final - https://netty.io/netty-codec/) * Netty/Codec/HTTP (io.netty:netty-codec-http:4.1.53.Final - https://netty.io/netty-codec-http/) * Netty/Codec/Socks (io.netty:netty-codec-socks:4.1.53.Final - https://netty.io/netty-codec-socks/) - * Netty/Common (io.netty:netty-common:4.1.68.Final - https://netty.io/netty-common/) - * Netty/Handler (io.netty:netty-handler:4.1.68.Final - https://netty.io/netty-handler/) + * Netty/Common (io.netty:netty-common:4.1.106.Final - https://netty.io/netty-common/) + * Netty/Common (io.netty:netty-common:4.1.99.Final - https://netty.io/netty-common/) + * Netty/Handler (io.netty:netty-handler:4.1.106.Final - https://netty.io/netty-handler/) + * Netty/Handler (io.netty:netty-handler:4.1.99.Final - https://netty.io/netty-handler/) * Netty/Handler/Proxy (io.netty:netty-handler-proxy:4.1.53.Final - https://netty.io/netty-handler-proxy/) - * Netty/Resolver (io.netty:netty-resolver:4.1.68.Final - https://netty.io/netty-resolver/) - * Netty/Transport (io.netty:netty-transport:4.1.68.Final - https://netty.io/netty-transport/) - * Netty/Transport/Native/Epoll (io.netty:netty-transport-native-epoll:4.1.68.Final - https://netty.io/netty-transport-native-epoll/) - * Netty/Transport/Native/Unix/Common (io.netty:netty-transport-native-unix-common:4.1.68.Final - https://netty.io/netty-transport-native-unix-common/) + * Netty/Resolver (io.netty:netty-resolver:4.1.99.Final - https://netty.io/netty-resolver/) + * Netty/Transport (io.netty:netty-transport:4.1.106.Final - https://netty.io/netty-transport/) + * Netty/Transport (io.netty:netty-transport:4.1.99.Final - https://netty.io/netty-transport/) + * Netty/Transport/Native/Epoll (io.netty:netty-transport-native-epoll:4.1.99.Final - https://netty.io/netty-transport-native-epoll/) + * Netty/Transport/Native/Unix/Common (io.netty:netty-transport-native-unix-common:4.1.106.Final - https://netty.io/netty-transport-native-unix-common/) + * Netty/Transport/Native/Unix/Common (io.netty:netty-transport-native-unix-common:4.1.99.Final - https://netty.io/netty-transport-native-unix-common/) * OpenTracing API (io.opentracing:opentracing-api:0.33.0 - https://github.com/opentracing/opentracing-java/opentracing-api) * OpenTracing-noop (io.opentracing:opentracing-noop:0.33.0 - https://github.com/opentracing/opentracing-java/opentracing-noop) * OpenTracing-util (io.opentracing:opentracing-util:0.33.0 - https://github.com/opentracing/opentracing-java/opentracing-util) * Google S2 geometry library (io.sgr:s2-geometry-library-java:1.0.0 - https://github.com/sgr-io/s2-geometry-library-java) + * Jandex: Core (io.smallrye:jandex:3.1.2 - https://smallrye.io) * swagger-annotations (io.swagger:swagger-annotations:1.6.2 - https://github.com/swagger-api/swagger-core/modules/swagger-annotations) * swagger-compat-spec-parser (io.swagger:swagger-compat-spec-parser:1.0.52 - http://nexus.sonatype.org/oss-repository-hosting.html/swagger-parser-project/modules/swagger-compat-spec-parser) * swagger-core (io.swagger:swagger-core:1.6.2 - https://github.com/swagger-api/swagger-core/modules/swagger-core) * swagger-models (io.swagger:swagger-models:1.6.2 - https://github.com/swagger-api/swagger-core/modules/swagger-models) * swagger-parser (io.swagger:swagger-parser:1.0.52 - http://nexus.sonatype.org/oss-repository-hosting.html/swagger-parser-project/modules/swagger-parser) * swagger-annotations (io.swagger.core.v3:swagger-annotations:2.1.5 - https://github.com/swagger-api/swagger-core/modules/swagger-annotations) + * swagger-annotations-jakarta (io.swagger.core.v3:swagger-annotations-jakarta:2.2.21 - https://github.com/swagger-api/swagger-core/modules/swagger-annotations-jakarta) * swagger-core (io.swagger.core.v3:swagger-core:2.1.5 - https://github.com/swagger-api/swagger-core/modules/swagger-core) + * swagger-core-jakarta (io.swagger.core.v3:swagger-core-jakarta:2.2.21 - https://github.com/swagger-api/swagger-core/modules/swagger-core-jakarta) + * swagger-integration-jakarta (io.swagger.core.v3:swagger-integration-jakarta:2.2.21 - https://github.com/swagger-api/swagger-core/modules/swagger-integration-jakarta) + * swagger-jaxrs2-jakarta (io.swagger.core.v3:swagger-jaxrs2-jakarta:2.2.21 - https://github.com/swagger-api/swagger-core/modules/swagger-jaxrs2-jakarta) * swagger-models (io.swagger.core.v3:swagger-models:2.1.5 - https://github.com/swagger-api/swagger-core/modules/swagger-models) + * swagger-models-jakarta (io.swagger.core.v3:swagger-models-jakarta:2.2.21 - https://github.com/swagger-api/swagger-core/modules/swagger-models-jakarta) * swagger-parser (io.swagger.parser.v3:swagger-parser:2.0.23 - http://nexus.sonatype.org/oss-repository-hosting.html/swagger-parser-project/modules/swagger-parser) * swagger-parser (io.swagger.parser.v3:swagger-parser-core:2.0.23 - http://nexus.sonatype.org/oss-repository-hosting.html/swagger-parser-project/modules/swagger-parser-core) * swagger-parser-v2-converter (io.swagger.parser.v3:swagger-parser-v2-converter:2.0.23 - http://nexus.sonatype.org/oss-repository-hosting.html/swagger-parser-project/modules/swagger-parser-v2-converter) * swagger-parser-v3 (io.swagger.parser.v3:swagger-parser-v3:2.0.23 - http://nexus.sonatype.org/oss-repository-hosting.html/swagger-parser-project/modules/swagger-parser-v3) - * Jakarta Bean Validation API (jakarta.validation:jakarta.validation-api:2.0.2 - https://beanvalidation.org) - * JSR107 API and SPI (javax.cache:cache-api:1.1.0 - https://github.com/jsr107/jsr107spec) + * Jakarta Dependency Injection (jakarta.inject:jakarta.inject-api:2.0.1 - https://github.com/eclipse-ee4j/injection-api) + * Jakarta Bean Validation API (jakarta.validation:jakarta.validation-api:3.0.2 - https://beanvalidation.org) + * JSR107 API and SPI (javax.cache:cache-api:1.1.1 - https://github.com/jsr107/jsr107spec) * javax.inject (javax.inject:javax.inject:1 - http://code.google.com/p/atinject/) - * Bean Validation API (javax.validation:validation-api:2.0.1.Final - http://beanvalidation.org) + * Bean Validation API (javax.validation:validation-api:1.1.0.Final - http://beanvalidation.org) * jdbm (jdbm:jdbm:1.0 - no url defined) - * Joda-Time (joda-time:joda-time:2.9.2 - http://www.joda.org/joda-time/) + * Joda-Time (joda-time:joda-time:2.12.5 - https://www.joda.org/joda-time/) * Byte Buddy (without dependencies) (net.bytebuddy:byte-buddy:1.11.13 - https://bytebuddy.net/byte-buddy) * Byte Buddy agent (net.bytebuddy:byte-buddy-agent:1.11.13 - https://bytebuddy.net/byte-buddy-agent) * eigenbase-properties (net.hydromatic:eigenbase-properties:1.1.5 - http://github.com/julianhyde/eigenbase-properties) * json-unit-core (net.javacrumbs.json-unit:json-unit-core:2.19.0 - https://github.com/lukas-krecan/JsonUnit/json-unit-core) * "Java Concurrency in Practice" book annotations (net.jcip:jcip-annotations:1.0 - http://jcip.net/) - * ASM based accessors helper used by json-smart (net.minidev:accessors-smart:1.2 - http://www.minidev.net/) - * ASM based accessors helper used by json-smart (net.minidev:accessors-smart:2.4.7 - https://urielch.github.io/) - * JSON Small and Fast Parser (net.minidev:json-smart:2.3 - http://www.minidev.net/) - * JSON Small and Fast Parser (net.minidev:json-smart:2.4.7 - https://urielch.github.io/) + * ASM based accessors helper used by json-smart (net.minidev:accessors-smart:2.5.0 - https://urielch.github.io/) + * JSON Small and Fast Parser (net.minidev:json-smart:2.5.0 - https://urielch.github.io/) * Abdera Core (org.apache.abdera:abdera-core:1.1.3 - http://abdera.apache.org/abdera-core) * I18N Libraries (org.apache.abdera:abdera-i18n:1.1.3 - http://abdera.apache.org) - * Apache Ant Core (org.apache.ant:ant:1.10.11 - https://ant.apache.org/) - * Apache Ant Launcher (org.apache.ant:ant-launcher:1.10.11 - https://ant.apache.org/) - * Apache Commons BCEL (org.apache.bcel:bcel:6.6.0 - https://commons.apache.org/proper/commons-bcel) - * Calcite Core (org.apache.calcite:calcite-core:1.27.0 - https://calcite.apache.org) - * Calcite Linq4j (org.apache.calcite:calcite-linq4j:1.27.0 - https://calcite.apache.org) - * Apache Calcite Avatica (org.apache.calcite.avatica:avatica-core:1.18.0 - https://calcite.apache.org/avatica) - * Apache Commons Collections (org.apache.commons:commons-collections4:4.1 - http://commons.apache.org/proper/commons-collections/) - * Apache Commons Compress (org.apache.commons:commons-compress:1.21 - https://commons.apache.org/proper/commons-compress/) - * Apache Commons Configuration (org.apache.commons:commons-configuration2:2.8.0 - https://commons.apache.org/proper/commons-configuration/) - * Apache Commons CSV (org.apache.commons:commons-csv:1.9.0 - https://commons.apache.org/proper/commons-csv/) - * Apache Commons DBCP (org.apache.commons:commons-dbcp2:2.9.0 - https://commons.apache.org/dbcp/) + * Abdera Parser (org.apache.abdera:abdera-parser:1.1.3 - http://abdera.apache.org/abdera-parser) + * Apache Ant Core (org.apache.ant:ant:1.10.14 - https://ant.apache.org/) + * Apache Ant Launcher (org.apache.ant:ant-launcher:1.10.14 - https://ant.apache.org/) + * Apache Commons BCEL (org.apache.bcel:bcel:6.7.0 - https://commons.apache.org/proper/commons-bcel) + * Calcite Core (org.apache.calcite:calcite-core:1.35.0 - https://calcite.apache.org) + * Calcite Linq4j (org.apache.calcite:calcite-linq4j:1.35.0 - https://calcite.apache.org) + * Apache Calcite Avatica (org.apache.calcite.avatica:avatica-core:1.23.0 - https://calcite.apache.org/avatica) + * Apache Calcite Avatica Metrics (org.apache.calcite.avatica:avatica-metrics:1.23.0 - https://calcite.apache.org/avatica) + * Apache Commons Collections (org.apache.commons:commons-collections4:4.4 - https://commons.apache.org/proper/commons-collections/) + * Apache Commons Compress (org.apache.commons:commons-compress:1.26.0 - https://commons.apache.org/proper/commons-compress/) + * Apache Commons Configuration (org.apache.commons:commons-configuration2:2.10.1 - https://commons.apache.org/proper/commons-configuration/) + * Apache Commons CSV (org.apache.commons:commons-csv:1.10.0 - https://commons.apache.org/proper/commons-csv/) + * Apache Commons DBCP (org.apache.commons:commons-dbcp2:2.11.0 - https://commons.apache.org/dbcp/) * Apache Commons Exec (org.apache.commons:commons-exec:1.3 - http://commons.apache.org/proper/commons-exec/) - * Apache Commons Lang (org.apache.commons:commons-lang3:3.12.0 - https://commons.apache.org/proper/commons-lang/) + * Apache Commons Exec (org.apache.commons:commons-exec:1.4.0 - https://commons.apache.org/proper/commons-exec/) + * Apache Commons Lang (org.apache.commons:commons-lang3:3.14.0 - https://commons.apache.org/proper/commons-lang/) * Apache Commons Math (org.apache.commons:commons-math3:3.6.1 - http://commons.apache.org/proper/commons-math/) - * Apache Commons Pool (org.apache.commons:commons-pool2:2.11.1 - https://commons.apache.org/proper/commons-pool/) + * Apache Commons Pool (org.apache.commons:commons-pool2:2.12.0 - https://commons.apache.org/proper/commons-pool/) * Apache Commons Text (org.apache.commons:commons-text:1.10.0 - https://commons.apache.org/proper/commons-text) * Curator Client (org.apache.curator:curator-client:2.13.0 - http://curator.apache.org/curator-client) * Curator Framework (org.apache.curator:curator-framework:2.13.0 - http://curator.apache.org/curator-framework) * Curator Recipes (org.apache.curator:curator-recipes:2.13.0 - http://curator.apache.org/curator-recipes) - * Apache Hadoop Annotations (org.apache.hadoop:hadoop-annotations:3.2.2 - no url defined) - * Apache Hadoop Auth (org.apache.hadoop:hadoop-auth:3.2.2 - no url defined) - * Apache Hadoop Common (org.apache.hadoop:hadoop-common:3.2.2 - no url defined) - * Apache Hadoop HDFS Client (org.apache.hadoop:hadoop-hdfs-client:3.2.2 - no url defined) + * Apache Hadoop Annotations (org.apache.hadoop:hadoop-annotations:3.2.4 - no url defined) + * Apache Hadoop Auth (org.apache.hadoop:hadoop-auth:3.2.4 - no url defined) + * Apache Hadoop Common (org.apache.hadoop:hadoop-common:3.2.4 - no url defined) + * Apache Hadoop HDFS Client (org.apache.hadoop:hadoop-hdfs-client:3.2.4 - no url defined) * htrace-core4 (org.apache.htrace:htrace-core4:4.1.0-incubating - http://incubator.apache.org/projects/htrace.html) - * Apache HttpClient (org.apache.httpcomponents:httpclient:4.5.13 - http://hc.apache.org/httpcomponents-client) - * Apache HttpClient Cache (org.apache.httpcomponents:httpclient-cache:4.2.6 - http://hc.apache.org/httpcomponents-client) - * Apache HttpCore (org.apache.httpcomponents:httpcore:4.4.15 - http://hc.apache.org/httpcomponents-core-ga) - * Apache HttpClient Mime (org.apache.httpcomponents:httpmime:4.5.13 - http://hc.apache.org/httpcomponents-client) - * Apache James :: Mime4j :: Core (org.apache.james:apache-mime4j-core:0.8.4 - http://james.apache.org/mime4j/apache-mime4j-core) - * Apache James :: Mime4j :: DOM (org.apache.james:apache-mime4j-dom:0.8.4 - http://james.apache.org/mime4j/apache-mime4j-dom) - * Apache Jena - Libraries POM (org.apache.jena:apache-jena-libs:2.13.0 - http://jena.apache.org/apache-jena-libs/) - * Apache Jena - ARQ (SPARQL 1.1 Query Engine) (org.apache.jena:jena-arq:2.13.0 - http://jena.apache.org/jena-arq/) - * Apache Jena - Core (org.apache.jena:jena-core:2.13.0 - http://jena.apache.org/jena-core/) - * Apache Jena - IRI (org.apache.jena:jena-iri:1.1.2 - http://jena.apache.org/jena-iri/) - * Apache Jena - TDB (Native Triple Store) (org.apache.jena:jena-tdb:1.1.2 - http://jena.apache.org/jena-tdb/) + * Apache HttpClient (org.apache.httpcomponents:httpclient:4.5.14 - http://hc.apache.org/httpcomponents-client-ga) + * Apache HttpClient Cache (org.apache.httpcomponents:httpclient-cache:4.5.14 - http://hc.apache.org/httpcomponents-client-ga) + * Apache HttpCore (org.apache.httpcomponents:httpcore:4.4.16 - http://hc.apache.org/httpcomponents-core-ga) + * Apache HttpClient Mime (org.apache.httpcomponents:httpmime:4.5.14 - http://hc.apache.org/httpcomponents-client-ga) + * Apache HttpClient (org.apache.httpcomponents.client5:httpclient5:5.1.3 - https://hc.apache.org/httpcomponents-client-5.0.x/5.1.3/httpclient5/) + * Apache HttpClient (org.apache.httpcomponents.client5:httpclient5:5.3.1 - https://hc.apache.org/httpcomponents-client-5.0.x/5.3.1/httpclient5/) + * Apache HttpComponents Core HTTP/1.1 (org.apache.httpcomponents.core5:httpcore5:5.1.3 - https://hc.apache.org/httpcomponents-core-5.1.x/5.1.3/httpcore5/) + * Apache HttpComponents Core HTTP/1.1 (org.apache.httpcomponents.core5:httpcore5:5.2.4 - https://hc.apache.org/httpcomponents-core-5.2.x/5.2.4/httpcore5/) + * Apache HttpComponents Core HTTP/2 (org.apache.httpcomponents.core5:httpcore5-h2:5.1.3 - https://hc.apache.org/httpcomponents-core-5.1.x/5.1.3/httpcore5-h2/) + * Apache HttpComponents Core HTTP/2 (org.apache.httpcomponents.core5:httpcore5-h2:5.2.4 - https://hc.apache.org/httpcomponents-core-5.2.x/5.2.4/httpcore5-h2/) + * Apache James :: Mime4j :: Core (org.apache.james:apache-mime4j-core:0.8.10 - http://james.apache.org/mime4j/apache-mime4j-core) + * Apache James :: Mime4j :: DOM (org.apache.james:apache-mime4j-dom:0.8.11 - http://james.apache.org/mime4j/apache-mime4j-dom) + * Apache Jena - Libraries POM (org.apache.jena:apache-jena-libs:4.9.0 - https://jena.apache.org/apache-jena-libs/) + * Apache Jena - ARQ (org.apache.jena:jena-arq:4.9.0 - https://jena.apache.org/jena-arq/) + * Apache Jena - Base (org.apache.jena:jena-base:4.9.0 - https://jena.apache.org/jena-base/) + * Apache Jena - Core (org.apache.jena:jena-core:4.9.0 - https://jena.apache.org/jena-core/) + * Apache Jena - DBOE Base (org.apache.jena:jena-dboe-base:4.9.0 - https://jena.apache.org/jena-dboe-base/) + * Apache Jena - DBOE Indexes (org.apache.jena:jena-dboe-index:4.9.0 - https://jena.apache.org/jena-dboe-index/) + * Apache Jena - DBOE Storage (org.apache.jena:jena-dboe-storage:4.9.0 - https://jena.apache.org/jena-dboe-storage/) + * Apache Jena - DBOE Transactional Datastructures (org.apache.jena:jena-dboe-trans-data:4.9.0 - https://jena.apache.org/jena-dboe-trans-data/) + * Apache Jena - DBOE Transactions (org.apache.jena:jena-dboe-transaction:4.9.0 - https://jena.apache.org/jena-dboe-transaction/) + * Apache Jena - IRI (org.apache.jena:jena-iri:4.9.0 - https://jena.apache.org/jena-iri/) + * Apache Jena - RDF Connection (org.apache.jena:jena-rdfconnection:4.9.0 - https://jena.apache.org/jena-rdfconnection/) + * Apache Jena - RDF Patch (org.apache.jena:jena-rdfpatch:4.9.0 - https://jena.apache.org/jena-rdfpatch/) + * Apache Jena - SHACL (org.apache.jena:jena-shacl:4.9.0 - https://jena.apache.org/jena-shacl/) + * Apache Jena - ShEx (org.apache.jena:jena-shex:4.9.0 - https://jena.apache.org/jena-shex/) + * Apache Jena - TDB1 (Native Triple Store) (org.apache.jena:jena-tdb:4.9.0 - https://jena.apache.org/jena-tdb/) + * Apache Jena - TDB2 (Native Triple Store) (org.apache.jena:jena-tdb2:4.9.0 - https://jena.apache.org/jena-tdb2/) * Kerby-kerb core (org.apache.kerby:kerb-core:1.0.1 - http://directory.apache.org/kerby/kerby-kerb/kerb-core) * Kerby-kerb Util (org.apache.kerby:kerb-util:1.0.1 - http://directory.apache.org/kerby/kerby-kerb/kerb-util) * Kerby ASN1 Project (org.apache.kerby:kerby-asn1:1.0.1 - http://directory.apache.org/kerby/kerby-common/kerby-asn1) * Kerby PKIX Project (org.apache.kerby:kerby-pkix:1.0.1 - http://directory.apache.org/kerby/kerby-pkix) - * Apache Log4j 1.x Compatibility API (org.apache.logging.log4j:log4j-1.2-api:2.20.0 - https://logging.apache.org/log4j/2.x/log4j-1.2-api/) - * Apache Log4j API (org.apache.logging.log4j:log4j-api:2.20.0 - https://logging.apache.org/log4j/2.x/log4j-api/) - * Apache Log4j Core (org.apache.logging.log4j:log4j-core:2.20.0 - https://logging.apache.org/log4j/2.x/log4j-core/) - * Apache Log4j JUL Adapter (org.apache.logging.log4j:log4j-jul:2.20.0 - https://logging.apache.org/log4j/2.x/log4j-jul/) - * Apache Log4j Layout for JSON template (org.apache.logging.log4j:log4j-layout-template-json:2.17.1 - https://logging.apache.org/log4j/2.x/log4j-layout-template-json/) - * Apache Log4j SLF4J Binding (org.apache.logging.log4j:log4j-slf4j-impl:2.20.0 - https://logging.apache.org/log4j/2.x/log4j-slf4j-impl/) - * Apache Log4j Web (org.apache.logging.log4j:log4j-web:2.20.0 - https://logging.apache.org/log4j/2.x/log4j-web/) - * Lucene Common Analyzers (org.apache.lucene:lucene-analyzers-common:8.11.2 - https://lucene.apache.org/lucene-parent/lucene-analyzers-common) - * Lucene ICU Analysis Components (org.apache.lucene:lucene-analyzers-icu:8.11.2 - https://lucene.apache.org/lucene-parent/lucene-analyzers-icu) - * Lucene Kuromoji Japanese Morphological Analyzer (org.apache.lucene:lucene-analyzers-kuromoji:8.11.2 - https://lucene.apache.org/lucene-parent/lucene-analyzers-kuromoji) - * Lucene Nori Korean Morphological Analyzer (org.apache.lucene:lucene-analyzers-nori:8.11.2 - https://lucene.apache.org/lucene-parent/lucene-analyzers-nori) - * Lucene Phonetic Filters (org.apache.lucene:lucene-analyzers-phonetic:8.11.2 - https://lucene.apache.org/lucene-parent/lucene-analyzers-phonetic) - * Lucene Smart Chinese Analyzer (org.apache.lucene:lucene-analyzers-smartcn:8.11.2 - https://lucene.apache.org/lucene-parent/lucene-analyzers-smartcn) - * Lucene Stempel Analyzer (org.apache.lucene:lucene-analyzers-stempel:8.11.2 - https://lucene.apache.org/lucene-parent/lucene-analyzers-stempel) - * Lucene Memory (org.apache.lucene:lucene-backward-codecs:8.11.2 - https://lucene.apache.org/lucene-parent/lucene-backward-codecs) - * Lucene Classification (org.apache.lucene:lucene-classification:8.11.2 - https://lucene.apache.org/lucene-parent/lucene-classification) - * Lucene codecs (org.apache.lucene:lucene-codecs:8.11.2 - https://lucene.apache.org/lucene-parent/lucene-codecs) - * Lucene Core (org.apache.lucene:lucene-core:8.11.2 - https://lucene.apache.org/lucene-parent/lucene-core) - * Lucene Expressions (org.apache.lucene:lucene-expressions:8.11.2 - https://lucene.apache.org/lucene-parent/lucene-expressions) - * Lucene Grouping (org.apache.lucene:lucene-grouping:8.11.2 - https://lucene.apache.org/lucene-parent/lucene-grouping) - * Lucene Highlighter (org.apache.lucene:lucene-highlighter:8.11.2 - https://lucene.apache.org/lucene-parent/lucene-highlighter) - * Lucene Join (org.apache.lucene:lucene-join:8.11.2 - https://lucene.apache.org/lucene-parent/lucene-join) - * Lucene Memory (org.apache.lucene:lucene-memory:8.11.2 - https://lucene.apache.org/lucene-parent/lucene-memory) - * Lucene Miscellaneous (org.apache.lucene:lucene-misc:8.11.2 - https://lucene.apache.org/lucene-parent/lucene-misc) - * Lucene Queries (org.apache.lucene:lucene-queries:8.11.2 - https://lucene.apache.org/lucene-parent/lucene-queries) - * Lucene QueryParsers (org.apache.lucene:lucene-queryparser:8.11.2 - https://lucene.apache.org/lucene-parent/lucene-queryparser) - * Lucene Sandbox (org.apache.lucene:lucene-sandbox:8.11.2 - https://lucene.apache.org/lucene-parent/lucene-sandbox) - * Lucene Spatial Extras (org.apache.lucene:lucene-spatial-extras:8.11.2 - https://lucene.apache.org/lucene-parent/lucene-spatial-extras) - * Lucene Spatial 3D (org.apache.lucene:lucene-spatial3d:8.11.2 - https://lucene.apache.org/lucene-parent/lucene-spatial3d) - * Lucene Suggest (org.apache.lucene:lucene-suggest:8.11.2 - https://lucene.apache.org/lucene-parent/lucene-suggest) - * Apache FontBox (org.apache.pdfbox:fontbox:2.0.28 - http://pdfbox.apache.org/) + * Apache Log4j 1.x Compatibility API (org.apache.logging.log4j:log4j-1.2-api:2.23.1 - https://logging.apache.org/log4j/2.x/log4j/log4j-1.2-api/) + * Apache Log4j API (org.apache.logging.log4j:log4j-api:2.23.1 - https://logging.apache.org/log4j/2.x/log4j/log4j-api/) + * Apache Log4j Core (org.apache.logging.log4j:log4j-core:2.23.1 - https://logging.apache.org/log4j/2.x/log4j/log4j-core/) + * Apache Log4j JUL Adapter (org.apache.logging.log4j:log4j-jul:2.23.1 - https://logging.apache.org/log4j/2.x/log4j/log4j-jul/) + * Apache Log4j Layout for JSON template (org.apache.logging.log4j:log4j-layout-template-json:2.17.2 - https://logging.apache.org/log4j/2.x/log4j-layout-template-json/) + * Apache Log4j SLF4J Binding (org.apache.logging.log4j:log4j-slf4j-impl:2.23.1 - https://logging.apache.org/log4j/2.x/log4j/log4j-slf4j-impl/) + * Apache Log4j SLF4J 2.0 Binding (org.apache.logging.log4j:log4j-slf4j2-impl:2.21.1 - https://logging.apache.org/log4j/2.x/log4j/log4j-slf4j2-impl/) + * Apache Log4j Web (org.apache.logging.log4j:log4j-web:2.23.1 - https://logging.apache.org/log4j/2.x/log4j/log4j-web/) + * Lucene Common Analyzers (org.apache.lucene:lucene-analyzers-common:8.11.3 - https://lucene.apache.org/lucene-parent/lucene-analyzers-common) + * Lucene ICU Analysis Components (org.apache.lucene:lucene-analyzers-icu:8.11.3 - https://lucene.apache.org/lucene-parent/lucene-analyzers-icu) + * Lucene Kuromoji Japanese Morphological Analyzer (org.apache.lucene:lucene-analyzers-kuromoji:8.11.3 - https://lucene.apache.org/lucene-parent/lucene-analyzers-kuromoji) + * Lucene Nori Korean Morphological Analyzer (org.apache.lucene:lucene-analyzers-nori:8.11.3 - https://lucene.apache.org/lucene-parent/lucene-analyzers-nori) + * Lucene Phonetic Filters (org.apache.lucene:lucene-analyzers-phonetic:8.11.3 - https://lucene.apache.org/lucene-parent/lucene-analyzers-phonetic) + * Lucene Smart Chinese Analyzer (org.apache.lucene:lucene-analyzers-smartcn:8.11.3 - https://lucene.apache.org/lucene-parent/lucene-analyzers-smartcn) + * Lucene Stempel Analyzer (org.apache.lucene:lucene-analyzers-stempel:8.11.3 - https://lucene.apache.org/lucene-parent/lucene-analyzers-stempel) + * Lucene Memory (org.apache.lucene:lucene-backward-codecs:8.11.3 - https://lucene.apache.org/lucene-parent/lucene-backward-codecs) + * Lucene Classification (org.apache.lucene:lucene-classification:8.11.3 - https://lucene.apache.org/lucene-parent/lucene-classification) + * Lucene codecs (org.apache.lucene:lucene-codecs:8.11.3 - https://lucene.apache.org/lucene-parent/lucene-codecs) + * Lucene Core (org.apache.lucene:lucene-core:8.11.3 - https://lucene.apache.org/lucene-parent/lucene-core) + * Lucene Expressions (org.apache.lucene:lucene-expressions:8.11.3 - https://lucene.apache.org/lucene-parent/lucene-expressions) + * Lucene Grouping (org.apache.lucene:lucene-grouping:8.11.3 - https://lucene.apache.org/lucene-parent/lucene-grouping) + * Lucene Highlighter (org.apache.lucene:lucene-highlighter:8.11.3 - https://lucene.apache.org/lucene-parent/lucene-highlighter) + * Lucene Join (org.apache.lucene:lucene-join:8.11.3 - https://lucene.apache.org/lucene-parent/lucene-join) + * Lucene Memory (org.apache.lucene:lucene-memory:8.11.3 - https://lucene.apache.org/lucene-parent/lucene-memory) + * Lucene Miscellaneous (org.apache.lucene:lucene-misc:8.11.3 - https://lucene.apache.org/lucene-parent/lucene-misc) + * Lucene Queries (org.apache.lucene:lucene-queries:8.11.3 - https://lucene.apache.org/lucene-parent/lucene-queries) + * Lucene QueryParsers (org.apache.lucene:lucene-queryparser:8.11.3 - https://lucene.apache.org/lucene-parent/lucene-queryparser) + * Lucene Sandbox (org.apache.lucene:lucene-sandbox:8.11.3 - https://lucene.apache.org/lucene-parent/lucene-sandbox) + * Lucene Spatial Extras (org.apache.lucene:lucene-spatial-extras:8.11.3 - https://lucene.apache.org/lucene-parent/lucene-spatial-extras) + * Lucene Spatial 3D (org.apache.lucene:lucene-spatial3d:8.11.3 - https://lucene.apache.org/lucene-parent/lucene-spatial3d) + * Lucene Suggest (org.apache.lucene:lucene-suggest:8.11.3 - https://lucene.apache.org/lucene-parent/lucene-suggest) + * Apache FontBox (org.apache.pdfbox:fontbox:2.0.31 - http://pdfbox.apache.org/) * PDFBox JBIG2 ImageIO plugin (org.apache.pdfbox:jbig2-imageio:3.0.4 - https://www.apache.org/jbig2-imageio/) * Apache JempBox (org.apache.pdfbox:jempbox:1.8.17 - http://www.apache.org/pdfbox-parent/jempbox/) - * Apache PDFBox (org.apache.pdfbox:pdfbox:2.0.28 - https://www.apache.org/pdfbox-parent/pdfbox/) - * Apache PDFBox tools (org.apache.pdfbox:pdfbox-tools:2.0.27 - https://www.apache.org/pdfbox-parent/pdfbox-tools/) - * Apache XmpBox (org.apache.pdfbox:xmpbox:2.0.27 - https://www.apache.org/pdfbox-parent/xmpbox/) - * Apache POI - Common (org.apache.poi:poi:5.2.3 - https://poi.apache.org/) - * Apache POI - API based on OPC and OOXML schemas (org.apache.poi:poi-ooxml:5.2.3 - https://poi.apache.org/) - * Apache POI (org.apache.poi:poi-ooxml-lite:5.2.3 - https://poi.apache.org/) - * Apache POI (org.apache.poi:poi-scratchpad:5.2.3 - https://poi.apache.org/) - * Apache Solr Core (org.apache.solr:solr-core:8.11.2 - https://lucene.apache.org/solr-parent/solr-core) - * Apache Solr Solrj (org.apache.solr:solr-solrj:8.11.2 - https://lucene.apache.org/solr-parent/solr-solrj) + * Apache PDFBox (org.apache.pdfbox:pdfbox:2.0.31 - https://www.apache.org/pdfbox-parent/pdfbox/) + * Apache PDFBox tools (org.apache.pdfbox:pdfbox-tools:2.0.31 - https://www.apache.org/pdfbox-parent/pdfbox-tools/) + * Apache XmpBox (org.apache.pdfbox:xmpbox:2.0.31 - https://www.apache.org/pdfbox-parent/xmpbox/) + * Apache POI - Common (org.apache.poi:poi:5.2.5 - https://poi.apache.org/) + * Apache POI - API based on OPC and OOXML schemas (org.apache.poi:poi-ooxml:5.2.5 - https://poi.apache.org/) + * Apache POI (org.apache.poi:poi-ooxml-lite:5.2.5 - https://poi.apache.org/) + * Apache POI (org.apache.poi:poi-scratchpad:5.2.5 - https://poi.apache.org/) + * Apache Solr Core (org.apache.solr:solr-core:8.11.3 - https://lucene.apache.org/solr-parent/solr-core) + * Apache Solr Solrj (org.apache.solr:solr-solrj:8.11.3 - https://lucene.apache.org/solr-parent/solr-solrj) * Apache Standard Taglib Implementation (org.apache.taglibs:taglibs-standard-impl:1.2.5 - http://tomcat.apache.org/taglibs/standard-1.2.5/taglibs-standard-impl) * Apache Standard Taglib Specification API (org.apache.taglibs:taglibs-standard-spec:1.2.5 - http://tomcat.apache.org/taglibs/standard-1.2.5/taglibs-standard-spec) - * Apache Thrift (org.apache.thrift:libthrift:0.9.2 - http://thrift.apache.org) - * Apache Tika core (org.apache.tika:tika-core:2.5.0 - https://tika.apache.org/) - * Apache Tika Apple parser module (org.apache.tika:tika-parser-apple-module:2.5.0 - https://tika.apache.org/tika-parser-apple-module/) - * Apache Tika audiovideo parser module (org.apache.tika:tika-parser-audiovideo-module:2.5.0 - https://tika.apache.org/tika-parser-audiovideo-module/) - * Apache Tika cad parser module (org.apache.tika:tika-parser-cad-module:2.5.0 - https://tika.apache.org/tika-parser-cad-module/) - * Apache Tika code parser module (org.apache.tika:tika-parser-code-module:2.5.0 - https://tika.apache.org/tika-parser-code-module/) - * Apache Tika crypto parser module (org.apache.tika:tika-parser-crypto-module:2.5.0 - https://tika.apache.org/tika-parser-crypto-module/) - * Apache Tika digest commons (org.apache.tika:tika-parser-digest-commons:2.5.0 - https://tika.apache.org/tika-parser-digest-commons/) - * Apache Tika font parser module (org.apache.tika:tika-parser-font-module:2.5.0 - https://tika.apache.org/tika-parser-font-module/) - * Apache Tika html parser module (org.apache.tika:tika-parser-html-module:2.5.0 - https://tika.apache.org/tika-parser-html-module/) - * Apache Tika image parser module (org.apache.tika:tika-parser-image-module:2.5.0 - https://tika.apache.org/tika-parser-image-module/) - * Apache Tika mail commons (org.apache.tika:tika-parser-mail-commons:2.5.0 - https://tika.apache.org/tika-parser-mail-commons/) - * Apache Tika mail parser module (org.apache.tika:tika-parser-mail-module:2.5.0 - https://tika.apache.org/tika-parser-mail-module/) - * Apache Tika Microsoft parser module (org.apache.tika:tika-parser-microsoft-module:2.5.0 - https://tika.apache.org/tika-parser-microsoft-module/) - * Apache Tika miscellaneous office format parser module (org.apache.tika:tika-parser-miscoffice-module:2.5.0 - https://tika.apache.org/tika-parser-miscoffice-module/) - * Apache Tika news parser module (org.apache.tika:tika-parser-news-module:2.5.0 - https://tika.apache.org/tika-parser-news-module/) - * Apache Tika OCR parser module (org.apache.tika:tika-parser-ocr-module:2.5.0 - https://tika.apache.org/tika-parser-ocr-module/) - * Apache Tika PDF parser module (org.apache.tika:tika-parser-pdf-module:2.5.0 - https://tika.apache.org/tika-parser-pdf-module/) - * Apache Tika package parser module (org.apache.tika:tika-parser-pkg-module:2.5.0 - https://tika.apache.org/tika-parser-pkg-module/) - * Apache Tika text parser module (org.apache.tika:tika-parser-text-module:2.5.0 - https://tika.apache.org/tika-parser-text-module/) - * Apache Tika WARC parser module (org.apache.tika:tika-parser-webarchive-module:2.5.0 - https://tika.apache.org/tika-parser-webarchive-module/) - * Apache Tika XML parser module (org.apache.tika:tika-parser-xml-module:2.5.0 - https://tika.apache.org/tika-parser-xml-module/) - * Apache Tika XMP commons (org.apache.tika:tika-parser-xmp-commons:2.5.0 - https://tika.apache.org/tika-parser-xmp-commons/) - * Apache Tika ZIP commons (org.apache.tika:tika-parser-zip-commons:2.5.0 - https://tika.apache.org/tika-parser-zip-commons/) - * Apache Tika standard parser package (org.apache.tika:tika-parsers-standard-package:2.5.0 - https://tika.apache.org/tika-parsers/tika-parsers-standard/tika-parsers-standard-package/) - * tomcat-embed-core (org.apache.tomcat.embed:tomcat-embed-core:9.0.75 - https://tomcat.apache.org/) - * tomcat-embed-el (org.apache.tomcat.embed:tomcat-embed-el:9.0.75 - https://tomcat.apache.org/) - * tomcat-embed-websocket (org.apache.tomcat.embed:tomcat-embed-websocket:9.0.75 - https://tomcat.apache.org/) + * Apache Thrift (org.apache.thrift:libthrift:0.18.1 - http://thrift.apache.org) + * Apache Tika core (org.apache.tika:tika-core:2.9.2 - https://tika.apache.org/) + * Apache Tika Apple parser module (org.apache.tika:tika-parser-apple-module:2.9.2 - https://tika.apache.org/tika-parser-apple-module/) + * Apache Tika audiovideo parser module (org.apache.tika:tika-parser-audiovideo-module:2.9.2 - https://tika.apache.org/tika-parser-audiovideo-module/) + * Apache Tika cad parser module (org.apache.tika:tika-parser-cad-module:2.9.2 - https://tika.apache.org/tika-parser-cad-module/) + * Apache Tika code parser module (org.apache.tika:tika-parser-code-module:2.9.2 - https://tika.apache.org/tika-parser-code-module/) + * Apache Tika crypto parser module (org.apache.tika:tika-parser-crypto-module:2.9.2 - https://tika.apache.org/tika-parser-crypto-module/) + * Apache Tika digest commons (org.apache.tika:tika-parser-digest-commons:2.9.2 - https://tika.apache.org/tika-parser-digest-commons/) + * Apache Tika font parser module (org.apache.tika:tika-parser-font-module:2.9.2 - https://tika.apache.org/tika-parser-font-module/) + * Apache Tika html parser module (org.apache.tika:tika-parser-html-module:2.9.2 - https://tika.apache.org/tika-parser-html-module/) + * Apache Tika image parser module (org.apache.tika:tika-parser-image-module:2.9.2 - https://tika.apache.org/tika-parser-image-module/) + * Apache Tika mail commons (org.apache.tika:tika-parser-mail-commons:2.9.2 - https://tika.apache.org/tika-parser-mail-commons/) + * Apache Tika mail parser module (org.apache.tika:tika-parser-mail-module:2.9.2 - https://tika.apache.org/tika-parser-mail-module/) + * Apache Tika Microsoft parser module (org.apache.tika:tika-parser-microsoft-module:2.9.2 - https://tika.apache.org/tika-parser-microsoft-module/) + * Apache Tika miscellaneous office format parser module (org.apache.tika:tika-parser-miscoffice-module:2.9.2 - https://tika.apache.org/tika-parser-miscoffice-module/) + * Apache Tika news parser module (org.apache.tika:tika-parser-news-module:2.9.2 - https://tika.apache.org/tika-parser-news-module/) + * Apache Tika OCR parser module (org.apache.tika:tika-parser-ocr-module:2.9.2 - https://tika.apache.org/tika-parser-ocr-module/) + * Apache Tika PDF parser module (org.apache.tika:tika-parser-pdf-module:2.9.2 - https://tika.apache.org/tika-parser-pdf-module/) + * Apache Tika package parser module (org.apache.tika:tika-parser-pkg-module:2.9.2 - https://tika.apache.org/tika-parser-pkg-module/) + * Apache Tika text parser module (org.apache.tika:tika-parser-text-module:2.9.2 - https://tika.apache.org/tika-parser-text-module/) + * Apache Tika WARC parser module (org.apache.tika:tika-parser-webarchive-module:2.9.2 - https://tika.apache.org/tika-parser-webarchive-module/) + * Apache Tika XML parser module (org.apache.tika:tika-parser-xml-module:2.9.2 - https://tika.apache.org/tika-parser-xml-module/) + * Apache Tika XMP commons (org.apache.tika:tika-parser-xmp-commons:2.9.2 - https://tika.apache.org/tika-parser-xmp-commons/) + * Apache Tika ZIP commons (org.apache.tika:tika-parser-zip-commons:2.9.2 - https://tika.apache.org/tika-parser-zip-commons/) + * Apache Tika standard parser package (org.apache.tika:tika-parsers-standard-package:2.9.2 - https://tika.apache.org/tika-parsers/tika-parsers-standard/tika-parsers-standard-package/) + * tomcat-embed-core (org.apache.tomcat.embed:tomcat-embed-core:10.1.24 - https://tomcat.apache.org/) + * tomcat-embed-el (org.apache.tomcat.embed:tomcat-embed-el:10.1.24 - https://tomcat.apache.org/) + * tomcat-embed-websocket (org.apache.tomcat.embed:tomcat-embed-websocket:10.1.24 - https://tomcat.apache.org/) * Apache Velocity - Engine (org.apache.velocity:velocity-engine-core:2.3 - http://velocity.apache.org/engine/devel/velocity-engine-core/) * Apache Velocity - JSR 223 Scripting (org.apache.velocity:velocity-engine-scripting:2.2 - http://velocity.apache.org/engine/devel/velocity-engine-scripting/) - * Axiom API (org.apache.ws.commons.axiom:axiom-api:1.2.22 - http://ws.apache.org/axiom/) - * Abdera Model (FOM) Implementation (org.apache.ws.commons.axiom:fom-impl:1.2.22 - http://ws.apache.org/axiom/implementations/fom-impl/) - * XmlBeans (org.apache.xmlbeans:xmlbeans:5.1.1 - https://xmlbeans.apache.org/) + * Axiom API (org.apache.ws.commons.axiom:axiom-api:1.2.14 - http://ws.apache.org/axiom/) + * Axiom Impl (org.apache.ws.commons.axiom:axiom-impl:1.2.14 - http://ws.apache.org/axiom/) + * XmlBeans (org.apache.xmlbeans:xmlbeans:5.2.0 - https://xmlbeans.apache.org/) * Apache ZooKeeper - Server (org.apache.zookeeper:zookeeper:3.6.2 - http://zookeeper.apache.org/zookeeper) * Apache ZooKeeper - Jute (org.apache.zookeeper:zookeeper-jute:3.6.2 - http://zookeeper.apache.org/zookeeper-jute) - * org.apiguardian:apiguardian-api (org.apiguardian:apiguardian-api:1.1.0 - https://github.com/apiguardian-team/apiguardian) - * AssertJ fluent assertions (org.assertj:assertj-core:3.22.0 - https://assertj.github.io/doc/assertj-core/) + * org.apiguardian:apiguardian-api (org.apiguardian:apiguardian-api:1.1.2 - https://github.com/apiguardian-team/apiguardian) + * AssertJ Core (org.assertj:assertj-core:3.24.2 - https://assertj.github.io/doc/#assertj-core) * Evo Inflector (org.atteo:evo-inflector:1.3 - http://atteo.org/static/evo-inflector) + * Awaitility (org.awaitility:awaitility:4.2.1 - http://awaitility.org) * jose4j (org.bitbucket.b_c:jose4j:0.6.5 - https://bitbucket.org/b_c/jose4j/) * TagSoup (org.ccil.cowan.tagsoup:tagsoup:1.2.1 - http://home.ccil.org/~cowan/XML/tagsoup/) + * Woodstox (org.codehaus.woodstox:wstx-asl:3.2.6 - http://woodstox.codehaus.org) * jems (org.dmfs:jems:1.18 - https://github.com/dmfs/jems) * rfc3986-uri (org.dmfs:rfc3986-uri:0.8.1 - https://github.com/dmfs/uri-toolkit) * Jetty :: Apache JSP Implementation (org.eclipse.jetty:apache-jsp:9.4.15.v20190215 - http://www.eclipse.org/jetty) * Apache :: JSTL module (org.eclipse.jetty:apache-jstl:9.4.15.v20190215 - http://tomcat.apache.org/taglibs/standard/) - * Jetty :: ALPN :: Client (org.eclipse.jetty:jetty-alpn-client:9.4.44.v20210927 - https://eclipse.org/jetty/jetty-alpn-parent/jetty-alpn-client) - * Jetty :: ALPN :: JDK9 Client Implementation (org.eclipse.jetty:jetty-alpn-java-client:9.4.44.v20210927 - https://eclipse.org/jetty/jetty-alpn-parent/jetty-alpn-java-client) - * Jetty :: ALPN :: JDK9 Server Implementation (org.eclipse.jetty:jetty-alpn-java-server:9.4.51.v20230217 - https://eclipse.org/jetty/jetty-alpn-parent/jetty-alpn-java-server) - * Jetty :: ALPN :: Server (org.eclipse.jetty:jetty-alpn-server:9.4.44.v20210927 - https://eclipse.org/jetty/jetty-alpn-parent/jetty-alpn-server) - * Jetty :: ALPN :: Server (org.eclipse.jetty:jetty-alpn-server:9.4.51.v20230217 - https://eclipse.org/jetty/jetty-alpn-parent/jetty-alpn-server) + * Jetty :: ALPN :: Client (org.eclipse.jetty:jetty-alpn-client:9.4.53.v20231009 - https://eclipse.org/jetty/jetty-alpn-parent/jetty-alpn-client) + * Jetty :: ALPN :: JDK9 Client Implementation (org.eclipse.jetty:jetty-alpn-java-client:9.4.53.v20231009 - https://eclipse.org/jetty/jetty-alpn-parent/jetty-alpn-java-client) + * Jetty :: ALPN :: JDK9 Server Implementation (org.eclipse.jetty:jetty-alpn-java-server:9.4.15.v20190215 - https://eclipse.org/jetty/jetty-alpn-parent/jetty-alpn-java-server) + * Jetty :: ALPN :: JDK9 Server Implementation (org.eclipse.jetty:jetty-alpn-java-server:9.4.53.v20231009 - https://eclipse.org/jetty/jetty-alpn-parent/jetty-alpn-java-server) + * Jetty :: ALPN :: Server (org.eclipse.jetty:jetty-alpn-server:9.4.15.v20190215 - https://eclipse.org/jetty/jetty-alpn-parent/jetty-alpn-server) + * Jetty :: ALPN :: Server (org.eclipse.jetty:jetty-alpn-server:9.4.53.v20231009 - https://eclipse.org/jetty/jetty-alpn-parent/jetty-alpn-server) * Jetty :: Servlet Annotations (org.eclipse.jetty:jetty-annotations:9.4.15.v20190215 - http://www.eclipse.org/jetty) - * Jetty :: Asynchronous HTTP Client (org.eclipse.jetty:jetty-client:9.4.44.v20210927 - https://eclipse.org/jetty/jetty-client) - * Jetty :: Continuation (org.eclipse.jetty:jetty-continuation:9.4.44.v20210927 - https://eclipse.org/jetty/jetty-continuation) - * Jetty :: Continuation (org.eclipse.jetty:jetty-continuation:9.4.51.v20230217 - https://eclipse.org/jetty/jetty-continuation) - * Jetty :: Deployers (org.eclipse.jetty:jetty-deploy:9.4.51.v20230217 - https://eclipse.org/jetty/jetty-deploy) - * Jetty :: Http Utility (org.eclipse.jetty:jetty-http:9.4.51.v20230217 - https://eclipse.org/jetty/jetty-http) - * Jetty :: IO Utility (org.eclipse.jetty:jetty-io:9.4.51.v20230217 - https://eclipse.org/jetty/jetty-io) - * Jetty :: JMX Management (org.eclipse.jetty:jetty-jmx:9.4.44.v20210927 - https://eclipse.org/jetty/jetty-jmx) + * Jetty :: Asynchronous HTTP Client (org.eclipse.jetty:jetty-client:9.4.53.v20231009 - https://eclipse.org/jetty/jetty-client) + * Jetty :: Continuation (org.eclipse.jetty:jetty-continuation:9.4.15.v20190215 - http://www.eclipse.org/jetty) + * Jetty :: Continuation (org.eclipse.jetty:jetty-continuation:9.4.53.v20231009 - https://eclipse.org/jetty/jetty-continuation) + * Jetty :: Deployers (org.eclipse.jetty:jetty-deploy:9.4.54.v20240208 - https://eclipse.org/jetty/jetty-deploy) + * Jetty :: Http Utility (org.eclipse.jetty:jetty-http:9.4.54.v20240208 - https://eclipse.org/jetty/jetty-http) + * Jetty :: IO Utility (org.eclipse.jetty:jetty-io:9.4.54.v20240208 - https://eclipse.org/jetty/jetty-io) + * Jetty :: JMX Management (org.eclipse.jetty:jetty-jmx:9.4.53.v20231009 - https://eclipse.org/jetty/jetty-jmx) * Jetty :: JNDI Naming (org.eclipse.jetty:jetty-jndi:9.4.15.v20190215 - http://www.eclipse.org/jetty) * Jetty :: Plus (org.eclipse.jetty:jetty-plus:9.4.15.v20190215 - http://www.eclipse.org/jetty) - * Jetty :: Rewrite Handler (org.eclipse.jetty:jetty-rewrite:9.4.44.v20210927 - https://eclipse.org/jetty/jetty-rewrite) - * Jetty :: Security (org.eclipse.jetty:jetty-security:9.4.44.v20210927 - https://eclipse.org/jetty/jetty-security) - * Jetty :: Security (org.eclipse.jetty:jetty-security:9.4.51.v20230217 - https://eclipse.org/jetty/jetty-security) - * Jetty :: Server Core (org.eclipse.jetty:jetty-server:9.4.51.v20230217 - https://eclipse.org/jetty/jetty-server) - * Jetty :: Servlet Handling (org.eclipse.jetty:jetty-servlet:9.4.51.v20230217 - https://eclipse.org/jetty/jetty-servlet) - * Jetty :: Utility Servlets and Filters (org.eclipse.jetty:jetty-servlets:9.4.51.v20230217 - https://eclipse.org/jetty/jetty-servlets) - * Jetty :: Utilities (org.eclipse.jetty:jetty-util:9.4.51.v20230217 - https://eclipse.org/jetty/jetty-util) - * Jetty :: Utilities :: Ajax(JSON) (org.eclipse.jetty:jetty-util-ajax:9.4.51.v20230217 - https://eclipse.org/jetty/jetty-util-ajax) - * Jetty :: Webapp Application Support (org.eclipse.jetty:jetty-webapp:9.4.51.v20230217 - https://eclipse.org/jetty/jetty-webapp) - * Jetty :: XML utilities (org.eclipse.jetty:jetty-xml:9.4.51.v20230217 - https://eclipse.org/jetty/jetty-xml) - * Jetty :: HTTP2 :: Client (org.eclipse.jetty.http2:http2-client:9.4.44.v20210927 - https://eclipse.org/jetty/http2-parent/http2-client) - * Jetty :: HTTP2 :: Common (org.eclipse.jetty.http2:http2-common:9.4.51.v20230217 - https://eclipse.org/jetty/http2-parent/http2-common) - * Jetty :: HTTP2 :: HPACK (org.eclipse.jetty.http2:http2-hpack:9.4.44.v20210927 - https://eclipse.org/jetty/http2-parent/http2-hpack) - * Jetty :: HTTP2 :: HTTP Client Transport (org.eclipse.jetty.http2:http2-http-client-transport:9.4.44.v20210927 - https://eclipse.org/jetty/http2-parent/http2-http-client-transport) - * Jetty :: HTTP2 :: Server (org.eclipse.jetty.http2:http2-server:9.4.51.v20230217 - https://eclipse.org/jetty/http2-parent/http2-server) + * Jetty :: Rewrite Handler (org.eclipse.jetty:jetty-rewrite:9.4.53.v20231009 - https://eclipse.org/jetty/jetty-rewrite) + * Jetty :: Security (org.eclipse.jetty:jetty-security:9.4.53.v20231009 - https://eclipse.org/jetty/jetty-security) + * Jetty :: Security (org.eclipse.jetty:jetty-security:9.4.54.v20240208 - https://eclipse.org/jetty/jetty-security) + * Jetty :: Server Core (org.eclipse.jetty:jetty-server:9.4.54.v20240208 - https://eclipse.org/jetty/jetty-server) + * Jetty :: Servlet Handling (org.eclipse.jetty:jetty-servlet:9.4.54.v20240208 - https://eclipse.org/jetty/jetty-servlet) + * Jetty :: Utility Servlets and Filters (org.eclipse.jetty:jetty-servlets:9.4.15.v20190215 - http://www.eclipse.org/jetty) + * Jetty :: Utility Servlets and Filters (org.eclipse.jetty:jetty-servlets:9.4.53.v20231009 - https://eclipse.org/jetty/jetty-servlets) + * Jetty :: Utilities (org.eclipse.jetty:jetty-util:9.4.54.v20240208 - https://eclipse.org/jetty/jetty-util) + * Jetty :: Utilities :: Ajax(JSON) (org.eclipse.jetty:jetty-util-ajax:9.4.54.v20240208 - https://eclipse.org/jetty/jetty-util-ajax) + * Jetty :: Webapp Application Support (org.eclipse.jetty:jetty-webapp:9.4.54.v20240208 - https://eclipse.org/jetty/jetty-webapp) + * Jetty :: XML utilities (org.eclipse.jetty:jetty-xml:9.4.53.v20231009 - https://eclipse.org/jetty/jetty-xml) + * Jetty :: XML utilities (org.eclipse.jetty:jetty-xml:9.4.54.v20240208 - https://eclipse.org/jetty/jetty-xml) + * Jetty :: ALPN :: API (org.eclipse.jetty.alpn:alpn-api:1.1.3.v20160715 - http://www.eclipse.org/jetty/alpn-api) + * Jetty :: HTTP2 :: Client (org.eclipse.jetty.http2:http2-client:9.4.53.v20231009 - https://eclipse.org/jetty/http2-parent/http2-client) + * Jetty :: HTTP2 :: Common (org.eclipse.jetty.http2:http2-common:9.4.54.v20240208 - https://eclipse.org/jetty/http2-parent/http2-common) + * Jetty :: HTTP2 :: HPACK (org.eclipse.jetty.http2:http2-hpack:9.4.53.v20231009 - https://eclipse.org/jetty/http2-parent/http2-hpack) + * Jetty :: HTTP2 :: HTTP Client Transport (org.eclipse.jetty.http2:http2-http-client-transport:9.4.53.v20231009 - https://eclipse.org/jetty/http2-parent/http2-http-client-transport) + * Jetty :: HTTP2 :: Server (org.eclipse.jetty.http2:http2-server:9.4.15.v20190215 - https://eclipse.org/jetty/http2-parent/http2-server) + * Jetty :: HTTP2 :: Server (org.eclipse.jetty.http2:http2-server:9.4.53.v20231009 - https://eclipse.org/jetty/http2-parent/http2-server) * Jetty :: Schemas (org.eclipse.jetty.toolchain:jetty-schemas:3.1.2 - https://eclipse.org/jetty/jetty-schemas) - * Ehcache (org.ehcache:ehcache:3.4.0 - http://ehcache.org) - * flyway-core (org.flywaydb:flyway-core:8.4.4 - https://flywaydb.org/flyway-core) + * Ehcache (org.ehcache:ehcache:3.10.8 - http://ehcache.org) + * flyway-core (org.flywaydb:flyway-core:10.10.0 - https://flywaydb.org/flyway-core) + * flyway-database-postgresql (org.flywaydb:flyway-database-postgresql:10.10.0 - https://flywaydb.org/flyway-database-postgresql) * Ogg and Vorbis for Java, Core (org.gagravarr:vorbis-java-core:0.8 - https://github.com/Gagravarr/VorbisJava) * Apache Tika plugin for Ogg, Vorbis and FLAC (org.gagravarr:vorbis-java-tika:0.8 - https://github.com/Gagravarr/VorbisJava) - * jersey-core-client (org.glassfish.jersey.core:jersey-client:2.35 - https://projects.eclipse.org/projects/ee4j.jersey/jersey-client) - * jersey-core-common (org.glassfish.jersey.core:jersey-common:2.35 - https://projects.eclipse.org/projects/ee4j.jersey/jersey-common) - * jersey-inject-hk2 (org.glassfish.jersey.inject:jersey-hk2:2.35 - https://projects.eclipse.org/projects/ee4j.jersey/project/jersey-hk2) - * Hibernate Validator Engine (org.hibernate.validator:hibernate-validator:6.2.5.Final - http://hibernate.org/validator/hibernate-validator) - * Hibernate Validator Portable Extension (org.hibernate.validator:hibernate-validator-cdi:6.2.5.Final - http://hibernate.org/validator/hibernate-validator-cdi) + * jersey-core-common (org.glassfish.jersey.core:jersey-common:3.1.5 - https://projects.eclipse.org/projects/ee4j.jersey/jersey-common) + * Hibernate Validator Engine (org.hibernate.validator:hibernate-validator:8.0.1.Final - http://hibernate.org/validator/hibernate-validator) + * Hibernate Validator Portable Extension (org.hibernate.validator:hibernate-validator-cdi:8.0.1.Final - http://hibernate.org/validator/hibernate-validator-cdi) + * org.immutables.value-annotations (org.immutables:value-annotations:2.9.2 - http://immutables.org/value-annotations) * leveldb (org.iq80.leveldb:leveldb:0.12 - http://github.com/dain/leveldb/leveldb) * leveldb-api (org.iq80.leveldb:leveldb-api:0.12 - http://github.com/dain/leveldb/leveldb-api) - * Javassist (org.javassist:javassist:3.25.0-GA - http://www.javassist.org/) - * Java Annotation Indexer (org.jboss:jandex:2.4.2.Final - http://www.jboss.org/jandex) + * Javassist (org.javassist:javassist:3.29.2-GA - http://www.javassist.org/) * JBoss Logging 3 (org.jboss.logging:jboss-logging:3.4.3.Final - http://www.jboss.org) * JDOM (org.jdom:jdom2:2.0.6.1 - http://www.jdom.org) * jtwig-core (org.jtwig:jtwig-core:5.87.0.RELEASE - http://jtwig.org) @@ -335,115 +380,108 @@ https://wiki.lyrasis.org/display/DSPACE/Code+Contribution+Guidelines * jtwig-spring (org.jtwig:jtwig-spring:5.87.0.RELEASE - http://jtwig.org) * jtwig-spring-boot-starter (org.jtwig:jtwig-spring-boot-starter:5.87.0.RELEASE - http://jtwig.org) * jtwig-web (org.jtwig:jtwig-web:5.87.0.RELEASE - http://jtwig.org) + * Proj4J (org.locationtech.proj4j:proj4j:1.1.5 - https://github.com/locationtech/proj4j) * Spatial4J (org.locationtech.spatial4j:spatial4j:0.7 - https://projects.eclipse.org/projects/locationtech.spatial4j) * MockServer Java Client (org.mock-server:mockserver-client-java:5.11.2 - http://www.mock-server.com) * MockServer Core (org.mock-server:mockserver-core:5.11.2 - http://www.mock-server.com) * MockServer JUnit 4 Integration (org.mock-server:mockserver-junit-rule:5.11.2 - http://www.mock-server.com) * MockServer & Proxy Netty (org.mock-server:mockserver-netty:5.11.2 - http://www.mock-server.com) - * MortBay :: Apache EL :: API and Implementation (org.mortbay.jasper:apache-el:8.5.35.1 - https://github.com/jetty-project/jasper-jsp/apache-el) - * MortBay :: Apache Jasper :: JSP Implementation (org.mortbay.jasper:apache-jsp:8.5.35.1 - https://github.com/jetty-project/jasper-jsp/apache-jsp) * Jetty Server (org.mortbay.jetty:jetty:6.1.26 - http://www.eclipse.org/jetty/jetty-parent/project/modules/jetty) * Jetty Servlet Tester (org.mortbay.jetty:jetty-servlet-tester:6.1.26 - http://www.eclipse.org/jetty/jetty-parent/project/jetty-servlet-tester) * Jetty Utilities (org.mortbay.jetty:jetty-util:6.1.26 - http://www.eclipse.org/jetty/jetty-parent/project/jetty-util) * Servlet Specification API (org.mortbay.jetty:servlet-api:2.5-20081211 - http://jetty.mortbay.org/servlet-api) - * jwarc (org.netpreserve:jwarc:0.19.0 - https://github.com/iipc/jwarc) + * jwarc (org.netpreserve:jwarc:0.29.0 - https://github.com/iipc/jwarc) * Objenesis (org.objenesis:objenesis:3.2 - http://objenesis.org/objenesis) * parboiled-core (org.parboiled:parboiled-core:1.3.1 - http://parboiled.org) * parboiled-java (org.parboiled:parboiled-java:1.3.1 - http://parboiled.org) + * org.roaringbitmap:RoaringBitmap (org.roaringbitmap:RoaringBitmap:0.9.45 - https://github.com/RoaringBitmap/RoaringBitmap) + * org.roaringbitmap:shims (org.roaringbitmap:shims:0.9.45 - https://github.com/RoaringBitmap/RoaringBitmap) * RRD4J (org.rrd4j:rrd4j:3.5 - https://github.com/rrd4j/rrd4j/) - * Scala Library (org.scala-lang:scala-library:2.13.9 - https://www.scala-lang.org/) + * Scala Library (org.scala-lang:scala-library:2.13.11 - https://www.scala-lang.org/) * Scala Compiler (org.scala-lang:scala-reflect:2.13.0 - https://www.scala-lang.org/) * scala-collection-compat (org.scala-lang.modules:scala-collection-compat_2.13:2.1.6 - http://www.scala-lang.org/) * scala-java8-compat (org.scala-lang.modules:scala-java8-compat_2.13:0.9.0 - http://www.scala-lang.org/) * scala-parser-combinators (org.scala-lang.modules:scala-parser-combinators_2.13:1.1.2 - http://www.scala-lang.org/) * scala-xml (org.scala-lang.modules:scala-xml_2.13:1.3.0 - http://www.scala-lang.org/) * JSONassert (org.skyscreamer:jsonassert:1.5.1 - https://github.com/skyscreamer/JSONassert) - * JCL 1.2 implemented over SLF4J (org.slf4j:jcl-over-slf4j:1.7.36 - http://www.slf4j.org) - * Spring AOP (org.springframework:spring-aop:5.3.27 - https://github.com/spring-projects/spring-framework) - * Spring Beans (org.springframework:spring-beans:5.3.27 - https://github.com/spring-projects/spring-framework) - * Spring Context (org.springframework:spring-context:5.3.27 - https://github.com/spring-projects/spring-framework) - * Spring Context Support (org.springframework:spring-context-support:5.3.27 - https://github.com/spring-projects/spring-framework) - * Spring Core (org.springframework:spring-core:5.3.27 - https://github.com/spring-projects/spring-framework) - * Spring Expression Language (SpEL) (org.springframework:spring-expression:5.3.27 - https://github.com/spring-projects/spring-framework) - * Spring Commons Logging Bridge (org.springframework:spring-jcl:5.3.27 - https://github.com/spring-projects/spring-framework) - * Spring JDBC (org.springframework:spring-jdbc:5.3.27 - https://github.com/spring-projects/spring-framework) - * Spring Object/Relational Mapping (org.springframework:spring-orm:5.3.27 - https://github.com/spring-projects/spring-framework) - * Spring TestContext Framework (org.springframework:spring-test:5.3.27 - https://github.com/spring-projects/spring-framework) - * Spring Transaction (org.springframework:spring-tx:5.3.27 - https://github.com/spring-projects/spring-framework) - * Spring Web (org.springframework:spring-web:5.3.27 - https://github.com/spring-projects/spring-framework) - * Spring Web MVC (org.springframework:spring-webmvc:5.3.27 - https://github.com/spring-projects/spring-framework) - * spring-boot (org.springframework.boot:spring-boot:2.7.12 - https://spring.io/projects/spring-boot) - * spring-boot-actuator (org.springframework.boot:spring-boot-actuator:2.7.12 - https://spring.io/projects/spring-boot) - * spring-boot-actuator-autoconfigure (org.springframework.boot:spring-boot-actuator-autoconfigure:2.7.12 - https://spring.io/projects/spring-boot) - * spring-boot-autoconfigure (org.springframework.boot:spring-boot-autoconfigure:2.7.12 - https://spring.io/projects/spring-boot) + * JCL 1.2 implemented over SLF4J (org.slf4j:jcl-over-slf4j:2.0.11 - http://www.slf4j.org) + * Spring AOP (org.springframework:spring-aop:6.1.8 - https://github.com/spring-projects/spring-framework) + * Spring Beans (org.springframework:spring-beans:6.1.8 - https://github.com/spring-projects/spring-framework) + * Spring Context (org.springframework:spring-context:6.1.8 - https://github.com/spring-projects/spring-framework) + * Spring Context Support (org.springframework:spring-context-support:6.1.8 - https://github.com/spring-projects/spring-framework) + * Spring Core (org.springframework:spring-core:6.1.8 - https://github.com/spring-projects/spring-framework) + * Spring Expression Language (SpEL) (org.springframework:spring-expression:6.1.8 - https://github.com/spring-projects/spring-framework) + * Spring Commons Logging Bridge (org.springframework:spring-jcl:6.1.8 - https://github.com/spring-projects/spring-framework) + * Spring JDBC (org.springframework:spring-jdbc:6.1.8 - https://github.com/spring-projects/spring-framework) + * Spring Object/Relational Mapping (org.springframework:spring-orm:6.1.8 - https://github.com/spring-projects/spring-framework) + * Spring TestContext Framework (org.springframework:spring-test:6.1.8 - https://github.com/spring-projects/spring-framework) + * Spring Transaction (org.springframework:spring-tx:6.1.8 - https://github.com/spring-projects/spring-framework) + * Spring Web (org.springframework:spring-web:6.1.8 - https://github.com/spring-projects/spring-framework) + * Spring Web MVC (org.springframework:spring-webmvc:6.1.8 - https://github.com/spring-projects/spring-framework) + * spring-boot (org.springframework.boot:spring-boot:3.2.6 - https://spring.io/projects/spring-boot) + * spring-boot-actuator (org.springframework.boot:spring-boot-actuator:3.2.6 - https://spring.io/projects/spring-boot) + * spring-boot-actuator-autoconfigure (org.springframework.boot:spring-boot-actuator-autoconfigure:3.2.6 - https://spring.io/projects/spring-boot) + * spring-boot-autoconfigure (org.springframework.boot:spring-boot-autoconfigure:3.2.6 - https://spring.io/projects/spring-boot) * Spring Boot Configuration Processor (org.springframework.boot:spring-boot-configuration-processor:2.0.0.RELEASE - https://projects.spring.io/spring-boot/#/spring-boot-parent/spring-boot-tools/spring-boot-configuration-processor) - * spring-boot-starter (org.springframework.boot:spring-boot-starter:2.7.12 - https://spring.io/projects/spring-boot) - * spring-boot-starter-actuator (org.springframework.boot:spring-boot-starter-actuator:2.7.12 - https://spring.io/projects/spring-boot) - * spring-boot-starter-aop (org.springframework.boot:spring-boot-starter-aop:2.7.12 - https://spring.io/projects/spring-boot) - * spring-boot-starter-cache (org.springframework.boot:spring-boot-starter-cache:2.7.12 - https://spring.io/projects/spring-boot) - * spring-boot-starter-data-rest (org.springframework.boot:spring-boot-starter-data-rest:2.7.12 - https://spring.io/projects/spring-boot) - * spring-boot-starter-json (org.springframework.boot:spring-boot-starter-json:2.7.12 - https://spring.io/projects/spring-boot) - * spring-boot-starter-log4j2 (org.springframework.boot:spring-boot-starter-log4j2:2.7.12 - https://spring.io/projects/spring-boot) - * spring-boot-starter-security (org.springframework.boot:spring-boot-starter-security:2.7.12 - https://spring.io/projects/spring-boot) - * spring-boot-starter-test (org.springframework.boot:spring-boot-starter-test:2.7.12 - https://spring.io/projects/spring-boot) - * spring-boot-starter-tomcat (org.springframework.boot:spring-boot-starter-tomcat:2.7.12 - https://spring.io/projects/spring-boot) - * spring-boot-starter-web (org.springframework.boot:spring-boot-starter-web:2.7.12 - https://spring.io/projects/spring-boot) - * spring-boot-test (org.springframework.boot:spring-boot-test:2.7.12 - https://spring.io/projects/spring-boot) - * spring-boot-test-autoconfigure (org.springframework.boot:spring-boot-test-autoconfigure:2.7.12 - https://spring.io/projects/spring-boot) - * Spring Data Core (org.springframework.data:spring-data-commons:2.7.12 - https://www.spring.io/spring-data/spring-data-commons) - * Spring Data REST - Core (org.springframework.data:spring-data-rest-core:3.7.12 - https://www.spring.io/spring-data/spring-data-rest-parent/spring-data-rest-core) - * Spring Data REST - WebMVC (org.springframework.data:spring-data-rest-webmvc:3.7.12 - https://www.spring.io/spring-data/spring-data-rest-parent/spring-data-rest-webmvc) - * Spring HATEOAS (org.springframework.hateoas:spring-hateoas:1.5.4 - https://github.com/spring-projects/spring-hateoas) - * Spring Plugin - Core (org.springframework.plugin:spring-plugin-core:2.0.0.RELEASE - https://github.com/spring-projects/spring-plugin/spring-plugin-core) - * spring-security-config (org.springframework.security:spring-security-config:5.7.8 - https://spring.io/projects/spring-security) - * spring-security-core (org.springframework.security:spring-security-core:5.7.8 - https://spring.io/projects/spring-security) - * spring-security-crypto (org.springframework.security:spring-security-crypto:5.7.8 - https://spring.io/projects/spring-security) - * spring-security-test (org.springframework.security:spring-security-test:5.7.8 - https://spring.io/projects/spring-security) - * spring-security-web (org.springframework.security:spring-security-web:5.7.8 - https://spring.io/projects/spring-security) - * SWORD v2 :: Common Server Library (org.swordapp:sword2-server:1.0 - http://www.swordapp.org/) - * snappy-java (org.xerial.snappy:snappy-java:1.1.7.6 - https://github.com/xerial/snappy-java) + * spring-boot-starter (org.springframework.boot:spring-boot-starter:3.2.6 - https://spring.io/projects/spring-boot) + * spring-boot-starter-actuator (org.springframework.boot:spring-boot-starter-actuator:3.2.6 - https://spring.io/projects/spring-boot) + * spring-boot-starter-aop (org.springframework.boot:spring-boot-starter-aop:3.2.6 - https://spring.io/projects/spring-boot) + * spring-boot-starter-cache (org.springframework.boot:spring-boot-starter-cache:3.2.6 - https://spring.io/projects/spring-boot) + * spring-boot-starter-data-rest (org.springframework.boot:spring-boot-starter-data-rest:3.2.6 - https://spring.io/projects/spring-boot) + * spring-boot-starter-json (org.springframework.boot:spring-boot-starter-json:3.2.6 - https://spring.io/projects/spring-boot) + * spring-boot-starter-log4j2 (org.springframework.boot:spring-boot-starter-log4j2:3.2.6 - https://spring.io/projects/spring-boot) + * spring-boot-starter-security (org.springframework.boot:spring-boot-starter-security:3.2.6 - https://spring.io/projects/spring-boot) + * spring-boot-starter-test (org.springframework.boot:spring-boot-starter-test:3.2.6 - https://spring.io/projects/spring-boot) + * spring-boot-starter-tomcat (org.springframework.boot:spring-boot-starter-tomcat:3.2.6 - https://spring.io/projects/spring-boot) + * spring-boot-starter-web (org.springframework.boot:spring-boot-starter-web:3.2.6 - https://spring.io/projects/spring-boot) + * spring-boot-test (org.springframework.boot:spring-boot-test:3.2.6 - https://spring.io/projects/spring-boot) + * spring-boot-test-autoconfigure (org.springframework.boot:spring-boot-test-autoconfigure:3.2.6 - https://spring.io/projects/spring-boot) + * Spring Data Core (org.springframework.data:spring-data-commons:3.2.6 - https://spring.io/projects/spring-data) + * Spring Data REST - Core (org.springframework.data:spring-data-rest-core:4.2.6 - https://www.spring.io/spring-data/spring-data-rest-parent/spring-data-rest-core) + * Spring Data REST - WebMVC (org.springframework.data:spring-data-rest-webmvc:4.2.6 - https://www.spring.io/spring-data/spring-data-rest-parent/spring-data-rest-webmvc) + * Spring HATEOAS (org.springframework.hateoas:spring-hateoas:2.2.2 - https://github.com/spring-projects/spring-hateoas) + * Spring Plugin - Core (org.springframework.plugin:spring-plugin-core:3.0.0 - https://github.com/spring-projects/spring-plugin/spring-plugin-core) + * spring-security-config (org.springframework.security:spring-security-config:6.2.4 - https://spring.io/projects/spring-security) + * spring-security-core (org.springframework.security:spring-security-core:6.2.4 - https://spring.io/projects/spring-security) + * spring-security-crypto (org.springframework.security:spring-security-crypto:6.2.4 - https://spring.io/projects/spring-security) + * spring-security-test (org.springframework.security:spring-security-test:6.2.4 - https://spring.io/projects/spring-security) + * spring-security-web (org.springframework.security:spring-security-web:6.2.4 - https://spring.io/projects/spring-security) + * snappy-java (org.xerial.snappy:snappy-java:1.1.10.1 - https://github.com/xerial/snappy-java) * xml-matchers (org.xmlmatchers:xml-matchers:0.10 - http://code.google.com/p/xml-matchers/) - * org.xmlunit:xmlunit-core (org.xmlunit:xmlunit-core:2.8.0 - https://www.xmlunit.org/) + * org.xmlunit:xmlunit-core (org.xmlunit:xmlunit-core:2.10.0 - https://www.xmlunit.org/) * org.xmlunit:xmlunit-core (org.xmlunit:xmlunit-core:2.9.1 - https://www.xmlunit.org/) * org.xmlunit:xmlunit-placeholders (org.xmlunit:xmlunit-placeholders:2.8.0 - https://www.xmlunit.org/xmlunit-placeholders/) - * SnakeYAML (org.yaml:snakeyaml:1.30 - https://bitbucket.org/snakeyaml/snakeyaml) + * SnakeYAML (org.yaml:snakeyaml:2.2 - https://bitbucket.org/snakeyaml/snakeyaml) * software.amazon.ion:ion-java (software.amazon.ion:ion-java:1.0.2 - https://github.com/amznlabs/ion-java/) - * Xalan Java Serializer (xalan:serializer:2.7.2 - http://xml.apache.org/xalan-j/) - * xalan (xalan:xalan:2.7.0 - no url defined) - * Xalan Java (xalan:xalan:2.7.2 - http://xml.apache.org/xalan-j/) * Xerces2-j (xerces:xercesImpl:2.12.2 - https://xerces.apache.org/xerces2-j/) - * XML Commons External Components XML APIs (xml-apis:xml-apis:1.4.01 - http://xml.apache.org/commons/components/external/) BSD License: - * AntLR Parser Generator (antlr:antlr:2.7.7 - http://www.antlr.org/) * Adobe XMPCore (com.adobe.xmp:xmpcore:6.1.11 - https://www.adobe.com/devnet/xmp/library/eula-xmp-library-java.html) * coverity-escapers (com.coverity.security:coverity-escapers:1.1.1 - http://coverity.com/security) * Java Advanced Imaging Image I/O Tools API core (standalone) (com.github.jai-imageio:jai-imageio-core:1.4.0 - https://github.com/jai-imageio/jai-imageio-core) - * JSONLD Java :: Core (com.github.jsonld-java:jsonld-java:0.5.1 - http://github.com/jsonld-java/jsonld-java/jsonld-java/) - * curvesapi (com.github.virtuald:curvesapi:1.07 - https://github.com/virtuald/curvesapi) - * Protocol Buffers [Core] (com.google.protobuf:protobuf-java:3.11.0 - https://developers.google.com/protocol-buffers/protobuf-java/) + * JSONLD Java :: Core (com.github.jsonld-java:jsonld-java:0.13.4 - http://github.com/jsonld-java/jsonld-java/jsonld-java/) + * curvesapi (com.github.virtuald:curvesapi:1.08 - https://github.com/virtuald/curvesapi) + * Protocol Buffers [Core] (com.google.protobuf:protobuf-java:3.15.0 - https://developers.google.com/protocol-buffers/protobuf-java/) + * Protocol Buffers [Core] (com.google.protobuf:protobuf-java:3.23.3 - https://developers.google.com/protocol-buffers/protobuf-java/) * JZlib (com.jcraft:jzlib:1.1.3 - http://www.jcraft.com/jzlib/) - * dnsjava (dnsjava:dnsjava:2.1.7 - http://www.dnsjava.org) - * jaxen (jaxen:jaxen:1.1.6 - http://jaxen.codehaus.org/) - * ANTLR 4 Runtime (org.antlr:antlr4-runtime:4.5.1-1 - http://www.antlr.org/antlr4-runtime) - * commons-compiler (org.codehaus.janino:commons-compiler:3.0.9 - http://janino-compiler.github.io/commons-compiler/) - * janino (org.codehaus.janino:janino:3.0.9 - http://janino-compiler.github.io/janino/) + * dnsjava (dnsjava:dnsjava:2.1.9 - http://www.dnsjava.org) + * jaxen (jaxen:jaxen:2.0.0 - http://www.cafeconleche.org/jaxen/jaxen) + * ANTLR 4 Runtime (org.antlr:antlr4-runtime:4.13.1 - https://www.antlr.org/antlr4-runtime/) + * commons-compiler (org.codehaus.janino:commons-compiler:3.1.8 - http://janino-compiler.github.io/commons-compiler/) + * janino (org.codehaus.janino:janino:3.1.8 - http://janino-compiler.github.io/janino/) * Stax2 API (org.codehaus.woodstox:stax2-api:4.2.1 - http://github.com/FasterXML/stax2-api) - * Hamcrest Date (org.exparity:hamcrest-date:2.0.7 - https://github.com/exparity/hamcrest-date) - * jersey-core-client (org.glassfish.jersey.core:jersey-client:2.35 - https://projects.eclipse.org/projects/ee4j.jersey/jersey-client) - * jersey-inject-hk2 (org.glassfish.jersey.inject:jersey-hk2:2.35 - https://projects.eclipse.org/projects/ee4j.jersey/project/jersey-hk2) + * Hamcrest Date (org.exparity:hamcrest-date:2.0.8 - https://github.com/exparity/hamcrest-date) * Hamcrest (org.hamcrest:hamcrest:2.2 - http://hamcrest.org/JavaHamcrest/) - * Hamcrest All (org.hamcrest:hamcrest-all:1.3 - https://github.com/hamcrest/JavaHamcrest/hamcrest-all) - * Hamcrest Core (org.hamcrest:hamcrest-core:1.3 - https://github.com/hamcrest/JavaHamcrest/hamcrest-core) + * Hamcrest Core (org.hamcrest:hamcrest-core:2.2 - http://hamcrest.org/JavaHamcrest/) * HdrHistogram (org.hdrhistogram:HdrHistogram:2.1.12 - http://hdrhistogram.github.io/HdrHistogram/) * JBibTeX (org.jbibtex:jbibtex:1.0.20 - http://www.jbibtex.org) * asm (org.ow2.asm:asm:8.0.1 - http://asm.ow2.io/) - * asm-analysis (org.ow2.asm:asm-analysis:7.1 - http://asm.ow2.org/) + * asm-analysis (org.ow2.asm:asm-analysis:8.0.1 - http://asm.ow2.io/) * asm-commons (org.ow2.asm:asm-commons:8.0.1 - http://asm.ow2.io/) - * asm-tree (org.ow2.asm:asm-tree:7.1 - http://asm.ow2.org/) + * asm-tree (org.ow2.asm:asm-tree:8.0.1 - http://asm.ow2.io/) * asm-util (org.ow2.asm:asm-util:7.1 - http://asm.ow2.org/) - * PostgreSQL JDBC Driver (org.postgresql:postgresql:42.6.0 - https://jdbc.postgresql.org) + * PostgreSQL JDBC Driver (org.postgresql:postgresql:42.7.3 - https://jdbc.postgresql.org) * Reflections (org.reflections:reflections:0.9.12 - http://github.com/ronmamo/reflections) * JMatIO (org.tallison:jmatio:1.5 - https://github.com/tballison/jmatio) * XMLUnit for Java (xmlunit:xmlunit:1.3 - http://xmlunit.sourceforge.net/) @@ -454,101 +492,121 @@ https://wiki.lyrasis.org/display/DSPACE/Code+Contribution+Guidelines Common Development and Distribution License (CDDL): - * istack common utility code runtime (com.sun.istack:istack-commons-runtime:3.0.7 - http://java.net/istack-commons/istack-commons-runtime/) - * JavaMail API (com.sun.mail:javax.mail:1.6.2 - http://javaee.github.io/javamail/javax.mail) * JavaMail API (no providers) (com.sun.mail:mailapi:1.6.2 - http://javaee.github.io/javamail/mailapi) * Old JAXB Core (com.sun.xml.bind:jaxb-core:2.3.0.1 - http://jaxb.java.net/jaxb-bundles/jaxb-core) * Old JAXB Runtime (com.sun.xml.bind:jaxb-impl:2.3.1 - http://jaxb.java.net/jaxb-bundles/jaxb-impl) - * Jakarta Annotations API (jakarta.annotation:jakarta.annotation-api:1.3.5 - https://projects.eclipse.org/projects/ee4j.ca) - * jakarta.ws.rs-api (jakarta.ws.rs:jakarta.ws.rs-api:2.1.6 - https://github.com/eclipse-ee4j/jaxrs-api) - * JavaBeans Activation Framework (JAF) (javax.activation:activation:1.1 - http://java.sun.com/products/javabeans/jaf/index.jsp) + * Jakarta Annotations API (jakarta.annotation:jakarta.annotation-api:2.1.1 - https://projects.eclipse.org/projects/ee4j.ca) + * Jakarta Mail API (jakarta.mail:jakarta.mail-api:2.1.3 - https://projects.eclipse.org/projects/ee4j/jakarta.mail-api) + * Jakarta Servlet (jakarta.servlet:jakarta.servlet-api:6.0.0 - https://projects.eclipse.org/projects/ee4j.servlet) + * jakarta.transaction API (jakarta.transaction:jakarta.transaction-api:2.0.1 - https://projects.eclipse.org/projects/ee4j.jta) * JavaBeans Activation Framework API jar (javax.activation:javax.activation-api:1.2.0 - http://java.net/all/javax.activation-api/) - * javax.annotation API (javax.annotation:javax.annotation-api:1.3.2 - http://jcp.org/en/jsr/detail?id=250) + * javax.annotation API (javax.annotation:javax.annotation-api:1.3 - http://jcp.org/en/jsr/detail?id=250) * Java Servlet API (javax.servlet:javax.servlet-api:3.1.0 - http://servlet-spec.java.net) * javax.transaction API (javax.transaction:javax.transaction-api:1.3 - http://jta-spec.java.net) * jaxb-api (javax.xml.bind:jaxb-api:2.3.1 - https://github.com/javaee/jaxb-spec/jaxb-api) * JHighlight (org.codelibs:jhighlight:1.1.0 - https://github.com/codelibs/jhighlight) - * HK2 API module (org.glassfish.hk2:hk2-api:2.6.1 - https://github.com/eclipse-ee4j/glassfish-hk2/hk2-api) - * ServiceLocator Default Implementation (org.glassfish.hk2:hk2-locator:2.6.1 - https://github.com/eclipse-ee4j/glassfish-hk2/hk2-locator) - * HK2 Implementation Utilities (org.glassfish.hk2:hk2-utils:2.6.1 - https://github.com/eclipse-ee4j/glassfish-hk2/hk2-utils) + * Angus Mail default provider (org.eclipse.angus:jakarta.mail:2.0.3 - http://eclipse-ee4j.github.io/angus-mail/jakarta.mail) + * HK2 API module (org.glassfish.hk2:hk2-api:3.0.5 - https://github.com/eclipse-ee4j/glassfish-hk2/hk2-api) + * ServiceLocator Default Implementation (org.glassfish.hk2:hk2-locator:3.0.5 - https://github.com/eclipse-ee4j/glassfish-hk2/hk2-locator) + * HK2 Implementation Utilities (org.glassfish.hk2:hk2-utils:3.0.5 - https://github.com/eclipse-ee4j/glassfish-hk2/hk2-utils) * OSGi resource locator (org.glassfish.hk2:osgi-resource-locator:1.0.3 - https://projects.eclipse.org/projects/ee4j/osgi-resource-locator) - * aopalliance version 1.0 repackaged as a module (org.glassfish.hk2.external:aopalliance-repackaged:2.6.1 - https://github.com/eclipse-ee4j/glassfish-hk2/external/aopalliance-repackaged) - * javax.inject:1 as OSGi bundle (org.glassfish.hk2.external:jakarta.inject:2.6.1 - https://github.com/eclipse-ee4j/glassfish-hk2/external/jakarta.inject) - * JAXB Runtime (org.glassfish.jaxb:jaxb-runtime:2.3.1 - http://jaxb.java.net/jaxb-runtime-parent/jaxb-runtime) - * TXW2 Runtime (org.glassfish.jaxb:txw2:2.3.1 - http://jaxb.java.net/jaxb-txw-parent/txw2) - * jersey-core-client (org.glassfish.jersey.core:jersey-client:2.35 - https://projects.eclipse.org/projects/ee4j.jersey/jersey-client) - * jersey-inject-hk2 (org.glassfish.jersey.inject:jersey-hk2:2.35 - https://projects.eclipse.org/projects/ee4j.jersey/project/jersey-hk2) - * Java Transaction API (org.jboss.spec.javax.transaction:jboss-transaction-api_1.2_spec:1.1.1.Final - http://www.jboss.org/jboss-transaction-api_1.2_spec) - * Extended StAX API (org.jvnet.staxex:stax-ex:1.8 - http://stax-ex.java.net/) + * aopalliance version 1.0 repackaged as a module (org.glassfish.hk2.external:aopalliance-repackaged:3.0.5 - https://github.com/eclipse-ee4j/glassfish-hk2/external/aopalliance-repackaged) + * jersey-core-client (org.glassfish.jersey.core:jersey-client:3.1.5 - https://projects.eclipse.org/projects/ee4j.jersey/jersey-client) + * jersey-inject-hk2 (org.glassfish.jersey.inject:jersey-hk2:3.1.5 - https://projects.eclipse.org/projects/ee4j.jersey/project/jersey-hk2) + * jersey-media-multipart (org.glassfish.jersey.media:jersey-media-multipart:3.1.3 - https://projects.eclipse.org/projects/ee4j.jersey/project/jersey-media-multipart) Cordra (Version 2) License Agreement: - * net.cnri:cnri-servlet-container (net.cnri:cnri-servlet-container:3.0.0 - https://gitlab.com/cnri/cnri-servlet-container) - * net.cnri:cnri-servlet-container-lib (net.cnri:cnri-servlet-container-lib:3.0.0 - https://gitlab.com/cnri/cnri-servlet-container) + * net.cnri:cnri-servlet-container-lib (net.cnri:cnri-servlet-container-lib:3.1.0 - https://gitlab.com/cnri/cnri-servlet-container) * net.cnri:cnriutil (net.cnri:cnriutil:2.0 - https://gitlab.com/cnri/cnriutil) + Cordra (Version 2.5.0) License Agreement: + + * net.cnri:cnri-servlet-container (net.cnri:cnri-servlet-container:3.1.0 - https://gitlab.com/cnri/cnri-servlet-container) + Eclipse Distribution License, Version 1.0: - * Jakarta Activation API jar (jakarta.activation:jakarta.activation-api:1.2.2 - https://github.com/eclipse-ee4j/jaf/jakarta.activation-api) - * Jakarta XML Binding API (jakarta.xml.bind:jakarta.xml.bind-api:2.3.3 - https://github.com/eclipse-ee4j/jaxb-api/jakarta.xml.bind-api) - * javax.persistence-api (javax.persistence:javax.persistence-api:2.2 - https://github.com/javaee/jpa-spec) - * jersey-core-client (org.glassfish.jersey.core:jersey-client:2.35 - https://projects.eclipse.org/projects/ee4j.jersey/jersey-client) - * jersey-inject-hk2 (org.glassfish.jersey.inject:jersey-hk2:2.35 - https://projects.eclipse.org/projects/ee4j.jersey/project/jersey-hk2) - * Java Persistence API, Version 2.1 (org.hibernate.javax.persistence:hibernate-jpa-2.1-api:1.0.2.Final - http://hibernate.org) + * istack common utility code runtime (com.sun.istack:istack-commons-runtime:4.1.2 - https://projects.eclipse.org/projects/ee4j/istack-commons/istack-commons-runtime) + * Jakarta Activation API (jakarta.activation:jakarta.activation-api:2.1.3 - https://github.com/jakartaee/jaf-api) + * Jakarta Mail API (jakarta.mail:jakarta.mail-api:2.1.3 - https://projects.eclipse.org/projects/ee4j/jakarta.mail-api) + * Jakarta Persistence API (jakarta.persistence:jakarta.persistence-api:3.1.0 - https://github.com/eclipse-ee4j/jpa-api) + * Jakarta XML Binding API (jakarta.xml.bind:jakarta.xml.bind-api:4.0.2 - https://github.com/jakartaee/jaxb-api/jakarta.xml.bind-api) + * Angus Activation Registries (org.eclipse.angus:angus-activation:2.0.2 - https://github.com/eclipse-ee4j/angus-activation/angus-activation) + * Angus Mail default provider (org.eclipse.angus:jakarta.mail:2.0.3 - http://eclipse-ee4j.github.io/angus-mail/jakarta.mail) + * JAXB Core (org.glassfish.jaxb:jaxb-core:4.0.5 - https://eclipse-ee4j.github.io/jaxb-ri/) + * JAXB Runtime (org.glassfish.jaxb:jaxb-runtime:4.0.5 - https://eclipse-ee4j.github.io/jaxb-ri/) + * TXW2 Runtime (org.glassfish.jaxb:txw2:4.0.5 - https://eclipse-ee4j.github.io/jaxb-ri/) + * jersey-core-client (org.glassfish.jersey.core:jersey-client:3.1.5 - https://projects.eclipse.org/projects/ee4j.jersey/jersey-client) + * jersey-inject-hk2 (org.glassfish.jersey.inject:jersey-hk2:3.1.5 - https://projects.eclipse.org/projects/ee4j.jersey/project/jersey-hk2) + * jersey-media-multipart (org.glassfish.jersey.media:jersey-media-multipart:3.1.3 - https://projects.eclipse.org/projects/ee4j.jersey/project/jersey-media-multipart) + * MIME streaming extension (org.jvnet.mimepull:mimepull:1.9.15 - https://github.com/eclipse-ee4j/metro-mimepull) + * org.locationtech.jts:jts-core (org.locationtech.jts:jts-core:1.19.0 - https://www.locationtech.org/projects/technology.jts/jts-modules/jts-core) + * org.locationtech.jts.io:jts-io-common (org.locationtech.jts.io:jts-io-common:1.19.0 - https://www.locationtech.org/projects/technology.jts/jts-modules/jts-io/jts-io-common) Eclipse Public License: * System Rules (com.github.stefanbirkner:system-rules:1.19.0 - http://stefanbirkner.github.io/system-rules/) - * H2 Database Engine (com.h2database:h2:2.1.210 - https://h2database.com) - * Jakarta Annotations API (jakarta.annotation:jakarta.annotation-api:1.3.5 - https://projects.eclipse.org/projects/ee4j.ca) - * jakarta.ws.rs-api (jakarta.ws.rs:jakarta.ws.rs-api:2.1.6 - https://github.com/eclipse-ee4j/jaxrs-api) - * javax.persistence-api (javax.persistence:javax.persistence-api:2.2 - https://github.com/javaee/jpa-spec) - * JUnit (junit:junit:4.13.1 - http://junit.org) - * AspectJ Weaver (org.aspectj:aspectjweaver:1.9.7 - https://www.eclipse.org/aspectj/) - * Eclipse Compiler for Java(TM) (org.eclipse.jdt:ecj:3.14.0 - http://www.eclipse.org/jdt) + * H2 Database Engine (com.h2database:h2:2.2.224 - https://h2database.com) + * Jakarta Annotations API (jakarta.annotation:jakarta.annotation-api:2.1.1 - https://projects.eclipse.org/projects/ee4j.ca) + * Jakarta Expression Language API (jakarta.el:jakarta.el-api:5.0.1 - https://projects.eclipse.org/projects/ee4j.el) + * Jakarta Mail API (jakarta.mail:jakarta.mail-api:2.1.3 - https://projects.eclipse.org/projects/ee4j/jakarta.mail-api) + * Jakarta Persistence API (jakarta.persistence:jakarta.persistence-api:3.1.0 - https://github.com/eclipse-ee4j/jpa-api) + * Jakarta Servlet (jakarta.servlet:jakarta.servlet-api:6.0.0 - https://projects.eclipse.org/projects/ee4j.servlet) + * jakarta.transaction API (jakarta.transaction:jakarta.transaction-api:2.0.1 - https://projects.eclipse.org/projects/ee4j.jta) + * Jakarta RESTful WS API (jakarta.ws.rs:jakarta.ws.rs-api:3.1.0 - https://github.com/eclipse-ee4j/jaxrs-api) + * JUnit (junit:junit:4.13.2 - http://junit.org) + * AspectJ Weaver (org.aspectj:aspectjweaver:1.9.22 - https://www.eclipse.org/aspectj/) + * Angus Mail default provider (org.eclipse.angus:jakarta.mail:2.0.3 - http://eclipse-ee4j.github.io/angus-mail/jakarta.mail) * Jetty :: Apache JSP Implementation (org.eclipse.jetty:apache-jsp:9.4.15.v20190215 - http://www.eclipse.org/jetty) * Apache :: JSTL module (org.eclipse.jetty:apache-jstl:9.4.15.v20190215 - http://tomcat.apache.org/taglibs/standard/) - * Jetty :: ALPN :: Client (org.eclipse.jetty:jetty-alpn-client:9.4.44.v20210927 - https://eclipse.org/jetty/jetty-alpn-parent/jetty-alpn-client) - * Jetty :: ALPN :: JDK9 Client Implementation (org.eclipse.jetty:jetty-alpn-java-client:9.4.44.v20210927 - https://eclipse.org/jetty/jetty-alpn-parent/jetty-alpn-java-client) - * Jetty :: ALPN :: JDK9 Server Implementation (org.eclipse.jetty:jetty-alpn-java-server:9.4.51.v20230217 - https://eclipse.org/jetty/jetty-alpn-parent/jetty-alpn-java-server) - * Jetty :: ALPN :: Server (org.eclipse.jetty:jetty-alpn-server:9.4.44.v20210927 - https://eclipse.org/jetty/jetty-alpn-parent/jetty-alpn-server) - * Jetty :: ALPN :: Server (org.eclipse.jetty:jetty-alpn-server:9.4.51.v20230217 - https://eclipse.org/jetty/jetty-alpn-parent/jetty-alpn-server) + * Jetty :: ALPN :: Client (org.eclipse.jetty:jetty-alpn-client:9.4.53.v20231009 - https://eclipse.org/jetty/jetty-alpn-parent/jetty-alpn-client) + * Jetty :: ALPN :: JDK9 Client Implementation (org.eclipse.jetty:jetty-alpn-java-client:9.4.53.v20231009 - https://eclipse.org/jetty/jetty-alpn-parent/jetty-alpn-java-client) + * Jetty :: ALPN :: JDK9 Server Implementation (org.eclipse.jetty:jetty-alpn-java-server:9.4.15.v20190215 - https://eclipse.org/jetty/jetty-alpn-parent/jetty-alpn-java-server) + * Jetty :: ALPN :: JDK9 Server Implementation (org.eclipse.jetty:jetty-alpn-java-server:9.4.53.v20231009 - https://eclipse.org/jetty/jetty-alpn-parent/jetty-alpn-java-server) + * Jetty :: ALPN :: Server (org.eclipse.jetty:jetty-alpn-server:9.4.15.v20190215 - https://eclipse.org/jetty/jetty-alpn-parent/jetty-alpn-server) + * Jetty :: ALPN :: Server (org.eclipse.jetty:jetty-alpn-server:9.4.53.v20231009 - https://eclipse.org/jetty/jetty-alpn-parent/jetty-alpn-server) * Jetty :: Servlet Annotations (org.eclipse.jetty:jetty-annotations:9.4.15.v20190215 - http://www.eclipse.org/jetty) - * Jetty :: Asynchronous HTTP Client (org.eclipse.jetty:jetty-client:9.4.44.v20210927 - https://eclipse.org/jetty/jetty-client) - * Jetty :: Continuation (org.eclipse.jetty:jetty-continuation:9.4.44.v20210927 - https://eclipse.org/jetty/jetty-continuation) - * Jetty :: Continuation (org.eclipse.jetty:jetty-continuation:9.4.51.v20230217 - https://eclipse.org/jetty/jetty-continuation) - * Jetty :: Deployers (org.eclipse.jetty:jetty-deploy:9.4.51.v20230217 - https://eclipse.org/jetty/jetty-deploy) - * Jetty :: Http Utility (org.eclipse.jetty:jetty-http:9.4.51.v20230217 - https://eclipse.org/jetty/jetty-http) - * Jetty :: IO Utility (org.eclipse.jetty:jetty-io:9.4.51.v20230217 - https://eclipse.org/jetty/jetty-io) - * Jetty :: JMX Management (org.eclipse.jetty:jetty-jmx:9.4.44.v20210927 - https://eclipse.org/jetty/jetty-jmx) + * Jetty :: Asynchronous HTTP Client (org.eclipse.jetty:jetty-client:9.4.53.v20231009 - https://eclipse.org/jetty/jetty-client) + * Jetty :: Continuation (org.eclipse.jetty:jetty-continuation:9.4.15.v20190215 - http://www.eclipse.org/jetty) + * Jetty :: Continuation (org.eclipse.jetty:jetty-continuation:9.4.53.v20231009 - https://eclipse.org/jetty/jetty-continuation) + * Jetty :: Deployers (org.eclipse.jetty:jetty-deploy:9.4.54.v20240208 - https://eclipse.org/jetty/jetty-deploy) + * Jetty :: Http Utility (org.eclipse.jetty:jetty-http:9.4.54.v20240208 - https://eclipse.org/jetty/jetty-http) + * Jetty :: IO Utility (org.eclipse.jetty:jetty-io:9.4.54.v20240208 - https://eclipse.org/jetty/jetty-io) + * Jetty :: JMX Management (org.eclipse.jetty:jetty-jmx:9.4.53.v20231009 - https://eclipse.org/jetty/jetty-jmx) * Jetty :: JNDI Naming (org.eclipse.jetty:jetty-jndi:9.4.15.v20190215 - http://www.eclipse.org/jetty) * Jetty :: Plus (org.eclipse.jetty:jetty-plus:9.4.15.v20190215 - http://www.eclipse.org/jetty) - * Jetty :: Rewrite Handler (org.eclipse.jetty:jetty-rewrite:9.4.44.v20210927 - https://eclipse.org/jetty/jetty-rewrite) - * Jetty :: Security (org.eclipse.jetty:jetty-security:9.4.44.v20210927 - https://eclipse.org/jetty/jetty-security) - * Jetty :: Security (org.eclipse.jetty:jetty-security:9.4.51.v20230217 - https://eclipse.org/jetty/jetty-security) - * Jetty :: Server Core (org.eclipse.jetty:jetty-server:9.4.51.v20230217 - https://eclipse.org/jetty/jetty-server) - * Jetty :: Servlet Handling (org.eclipse.jetty:jetty-servlet:9.4.51.v20230217 - https://eclipse.org/jetty/jetty-servlet) - * Jetty :: Utility Servlets and Filters (org.eclipse.jetty:jetty-servlets:9.4.51.v20230217 - https://eclipse.org/jetty/jetty-servlets) - * Jetty :: Utilities (org.eclipse.jetty:jetty-util:9.4.51.v20230217 - https://eclipse.org/jetty/jetty-util) - * Jetty :: Utilities :: Ajax(JSON) (org.eclipse.jetty:jetty-util-ajax:9.4.51.v20230217 - https://eclipse.org/jetty/jetty-util-ajax) - * Jetty :: Webapp Application Support (org.eclipse.jetty:jetty-webapp:9.4.51.v20230217 - https://eclipse.org/jetty/jetty-webapp) - * Jetty :: XML utilities (org.eclipse.jetty:jetty-xml:9.4.51.v20230217 - https://eclipse.org/jetty/jetty-xml) - * Jetty :: HTTP2 :: Client (org.eclipse.jetty.http2:http2-client:9.4.44.v20210927 - https://eclipse.org/jetty/http2-parent/http2-client) - * Jetty :: HTTP2 :: Common (org.eclipse.jetty.http2:http2-common:9.4.51.v20230217 - https://eclipse.org/jetty/http2-parent/http2-common) - * Jetty :: HTTP2 :: HPACK (org.eclipse.jetty.http2:http2-hpack:9.4.44.v20210927 - https://eclipse.org/jetty/http2-parent/http2-hpack) - * Jetty :: HTTP2 :: HTTP Client Transport (org.eclipse.jetty.http2:http2-http-client-transport:9.4.44.v20210927 - https://eclipse.org/jetty/http2-parent/http2-http-client-transport) - * Jetty :: HTTP2 :: Server (org.eclipse.jetty.http2:http2-server:9.4.51.v20230217 - https://eclipse.org/jetty/http2-parent/http2-server) + * Jetty :: Rewrite Handler (org.eclipse.jetty:jetty-rewrite:9.4.53.v20231009 - https://eclipse.org/jetty/jetty-rewrite) + * Jetty :: Security (org.eclipse.jetty:jetty-security:9.4.53.v20231009 - https://eclipse.org/jetty/jetty-security) + * Jetty :: Security (org.eclipse.jetty:jetty-security:9.4.54.v20240208 - https://eclipse.org/jetty/jetty-security) + * Jetty :: Server Core (org.eclipse.jetty:jetty-server:9.4.54.v20240208 - https://eclipse.org/jetty/jetty-server) + * Jetty :: Servlet Handling (org.eclipse.jetty:jetty-servlet:9.4.54.v20240208 - https://eclipse.org/jetty/jetty-servlet) + * Jetty :: Utility Servlets and Filters (org.eclipse.jetty:jetty-servlets:9.4.15.v20190215 - http://www.eclipse.org/jetty) + * Jetty :: Utility Servlets and Filters (org.eclipse.jetty:jetty-servlets:9.4.53.v20231009 - https://eclipse.org/jetty/jetty-servlets) + * Jetty :: Utilities (org.eclipse.jetty:jetty-util:9.4.54.v20240208 - https://eclipse.org/jetty/jetty-util) + * Jetty :: Utilities :: Ajax(JSON) (org.eclipse.jetty:jetty-util-ajax:9.4.54.v20240208 - https://eclipse.org/jetty/jetty-util-ajax) + * Jetty :: Webapp Application Support (org.eclipse.jetty:jetty-webapp:9.4.54.v20240208 - https://eclipse.org/jetty/jetty-webapp) + * Jetty :: XML utilities (org.eclipse.jetty:jetty-xml:9.4.53.v20231009 - https://eclipse.org/jetty/jetty-xml) + * Jetty :: XML utilities (org.eclipse.jetty:jetty-xml:9.4.54.v20240208 - https://eclipse.org/jetty/jetty-xml) + * Jetty :: ALPN :: API (org.eclipse.jetty.alpn:alpn-api:1.1.3.v20160715 - http://www.eclipse.org/jetty/alpn-api) + * Jetty :: HTTP2 :: Client (org.eclipse.jetty.http2:http2-client:9.4.53.v20231009 - https://eclipse.org/jetty/http2-parent/http2-client) + * Jetty :: HTTP2 :: Common (org.eclipse.jetty.http2:http2-common:9.4.54.v20240208 - https://eclipse.org/jetty/http2-parent/http2-common) + * Jetty :: HTTP2 :: HPACK (org.eclipse.jetty.http2:http2-hpack:9.4.53.v20231009 - https://eclipse.org/jetty/http2-parent/http2-hpack) + * Jetty :: HTTP2 :: HTTP Client Transport (org.eclipse.jetty.http2:http2-http-client-transport:9.4.53.v20231009 - https://eclipse.org/jetty/http2-parent/http2-http-client-transport) + * Jetty :: HTTP2 :: Server (org.eclipse.jetty.http2:http2-server:9.4.15.v20190215 - https://eclipse.org/jetty/http2-parent/http2-server) + * Jetty :: HTTP2 :: Server (org.eclipse.jetty.http2:http2-server:9.4.53.v20231009 - https://eclipse.org/jetty/http2-parent/http2-server) * Jetty :: Schemas (org.eclipse.jetty.toolchain:jetty-schemas:3.1.2 - https://eclipse.org/jetty/jetty-schemas) - * HK2 API module (org.glassfish.hk2:hk2-api:2.6.1 - https://github.com/eclipse-ee4j/glassfish-hk2/hk2-api) - * ServiceLocator Default Implementation (org.glassfish.hk2:hk2-locator:2.6.1 - https://github.com/eclipse-ee4j/glassfish-hk2/hk2-locator) - * HK2 Implementation Utilities (org.glassfish.hk2:hk2-utils:2.6.1 - https://github.com/eclipse-ee4j/glassfish-hk2/hk2-utils) + * JSON-P Default Provider (org.glassfish:jakarta.json:2.0.1 - https://github.com/eclipse-ee4j/jsonp) + * HK2 API module (org.glassfish.hk2:hk2-api:3.0.5 - https://github.com/eclipse-ee4j/glassfish-hk2/hk2-api) + * ServiceLocator Default Implementation (org.glassfish.hk2:hk2-locator:3.0.5 - https://github.com/eclipse-ee4j/glassfish-hk2/hk2-locator) + * HK2 Implementation Utilities (org.glassfish.hk2:hk2-utils:3.0.5 - https://github.com/eclipse-ee4j/glassfish-hk2/hk2-utils) * OSGi resource locator (org.glassfish.hk2:osgi-resource-locator:1.0.3 - https://projects.eclipse.org/projects/ee4j/osgi-resource-locator) - * aopalliance version 1.0 repackaged as a module (org.glassfish.hk2.external:aopalliance-repackaged:2.6.1 - https://github.com/eclipse-ee4j/glassfish-hk2/external/aopalliance-repackaged) - * javax.inject:1 as OSGi bundle (org.glassfish.hk2.external:jakarta.inject:2.6.1 - https://github.com/eclipse-ee4j/glassfish-hk2/external/jakarta.inject) - * jersey-core-client (org.glassfish.jersey.core:jersey-client:2.35 - https://projects.eclipse.org/projects/ee4j.jersey/jersey-client) - * jersey-core-common (org.glassfish.jersey.core:jersey-common:2.35 - https://projects.eclipse.org/projects/ee4j.jersey/jersey-common) - * jersey-inject-hk2 (org.glassfish.jersey.inject:jersey-hk2:2.35 - https://projects.eclipse.org/projects/ee4j.jersey/project/jersey-hk2) - * Java Persistence API, Version 2.1 (org.hibernate.javax.persistence:hibernate-jpa-2.1-api:1.0.2.Final - http://hibernate.org) + * aopalliance version 1.0 repackaged as a module (org.glassfish.hk2.external:aopalliance-repackaged:3.0.5 - https://github.com/eclipse-ee4j/glassfish-hk2/external/aopalliance-repackaged) + * jersey-core-client (org.glassfish.jersey.core:jersey-client:3.1.5 - https://projects.eclipse.org/projects/ee4j.jersey/jersey-client) + * jersey-core-common (org.glassfish.jersey.core:jersey-common:3.1.5 - https://projects.eclipse.org/projects/ee4j.jersey/jersey-common) + * jersey-inject-hk2 (org.glassfish.jersey.inject:jersey-hk2:3.1.5 - https://projects.eclipse.org/projects/ee4j.jersey/project/jersey-hk2) + * jersey-media-multipart (org.glassfish.jersey.media:jersey-media-multipart:3.1.3 - https://projects.eclipse.org/projects/ee4j.jersey/project/jersey-media-multipart) + * org.locationtech.jts:jts-core (org.locationtech.jts:jts-core:1.19.0 - https://www.locationtech.org/projects/technology.jts/jts-modules/jts-core) + * org.locationtech.jts.io:jts-io-common (org.locationtech.jts.io:jts-io-common:1.19.0 - https://www.locationtech.org/projects/technology.jts/jts-modules/jts-io/jts-io-common) * Jetty Server (org.mortbay.jetty:jetty:6.1.26 - http://www.eclipse.org/jetty/jetty-parent/project/modules/jetty) * Jetty Servlet Tester (org.mortbay.jetty:jetty-servlet-tester:6.1.26 - http://www.eclipse.org/jetty/jetty-parent/project/jetty-servlet-tester) * Jetty Utilities (org.mortbay.jetty:jetty-util:6.1.26 - http://www.eclipse.org/jetty/jetty-parent/project/jetty-util) @@ -564,14 +622,13 @@ https://wiki.lyrasis.org/display/DSPACE/Code+Contribution+Guidelines * uri-template (com.github.java-json-tools:uri-template:0.10 - https://github.com/java-json-tools/uri-template) * FindBugs-Annotations (com.google.code.findbugs:annotations:3.0.1u2 - http://findbugs.sourceforge.net/) * JHighlight (org.codelibs:jhighlight:1.1.0 - https://github.com/codelibs/jhighlight) - * Hibernate ORM - hibernate-core (org.hibernate:hibernate-core:5.6.15.Final - https://hibernate.org/orm) - * Hibernate ORM - hibernate-jcache (org.hibernate:hibernate-jcache:5.6.15.Final - https://hibernate.org/orm) - * Hibernate ORM - hibernate-jpamodelgen (org.hibernate:hibernate-jpamodelgen:5.6.15.Final - https://hibernate.org/orm) - * Hibernate Commons Annotations (org.hibernate.common:hibernate-commons-annotations:5.1.2.Final - http://hibernate.org) + * Hibernate Commons Annotations (org.hibernate.common:hibernate-commons-annotations:6.0.6.Final - http://hibernate.org) + * Hibernate ORM - hibernate-core (org.hibernate.orm:hibernate-core:6.4.8.Final - https://hibernate.org/orm) + * Hibernate ORM - hibernate-jcache (org.hibernate.orm:hibernate-jcache:6.4.8.Final - https://hibernate.org/orm) + * Hibernate ORM - hibernate-jpamodelgen (org.hibernate.orm:hibernate-jpamodelgen:6.4.8.Final - https://hibernate.org/orm) * im4java (org.im4java:im4java:1.4.0 - http://sourceforge.net/projects/im4java/) - * Javassist (org.javassist:javassist:3.25.0-GA - http://www.javassist.org/) - * XOM (xom:xom:1.2.5 - http://xom.nu) - * XOM (xom:xom:1.3.7 - https://xom.nu) + * Javassist (org.javassist:javassist:3.29.2-GA - http://www.javassist.org/) + * XOM (xom:xom:1.3.9 - https://xom.nu) Go License: @@ -579,63 +636,70 @@ https://wiki.lyrasis.org/display/DSPACE/Code+Contribution+Guidelines Handle.Net Public License Agreement (Ver.2): - 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https://www.bouncycastle.org/java.html) + * Bouncy Castle Provider (org.bouncycastle:bcprov-jdk15on:1.67 - http://www.bouncycastle.org/java.html) + * Bouncy Castle Provider (org.bouncycastle:bcprov-jdk18on:1.78.1 - https://www.bouncycastle.org/java.html) + * Bouncy Castle ASN.1 Extension and Utility APIs (org.bouncycastle:bcutil-jdk18on:1.78.1 - https://www.bouncycastle.org/java.html) * org.brotli:dec (org.brotli:dec:0.1.2 - http://brotli.org/dec) - * Checker Qual (org.checkerframework:checker-qual:3.10.0 - https://checkerframework.org) * Checker Qual (org.checkerframework:checker-qual:3.31.0 - https://checkerframework.org) - * jersey-core-client (org.glassfish.jersey.core:jersey-client:2.35 - https://projects.eclipse.org/projects/ee4j.jersey/jersey-client) - * jersey-inject-hk2 (org.glassfish.jersey.inject:jersey-hk2:2.35 - https://projects.eclipse.org/projects/ee4j.jersey/project/jersey-hk2) + * jersey-core-client (org.glassfish.jersey.core:jersey-client:3.1.5 - https://projects.eclipse.org/projects/ee4j.jersey/jersey-client) + * jersey-inject-hk2 (org.glassfish.jersey.inject:jersey-hk2:3.1.5 - https://projects.eclipse.org/projects/ee4j.jersey/project/jersey-hk2) + * jersey-media-multipart (org.glassfish.jersey.media:jersey-media-multipart:3.1.3 - https://projects.eclipse.org/projects/ee4j.jersey/project/jersey-media-multipart) * mockito-core (org.mockito:mockito-core:3.12.4 - https://github.com/mockito/mockito) * mockito-inline (org.mockito:mockito-inline:3.12.4 - https://github.com/mockito/mockito) - * ORCID - Model (org.orcid:orcid-model:3.0.2 - http://github.com/ORCID/orcid-model) - * JUL to SLF4J bridge (org.slf4j:jul-to-slf4j:1.7.36 - http://www.slf4j.org) - * SLF4J API Module (org.slf4j:slf4j-api:1.7.36 - http://www.slf4j.org) + * SLF4J API Module (org.slf4j:slf4j-api:2.0.11 - http://www.slf4j.org) * SLF4J Extensions Module (org.slf4j:slf4j-ext:1.7.28 - http://www.slf4j.org) * HAL Browser (org.webjars:hal-browser:ad9b865 - http://webjars.org) * toastr (org.webjars.bowergithub.codeseven:toastr:2.1.4 - http://webjars.org) * backbone (org.webjars.bowergithub.jashkenas:backbone:1.4.1 - 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* H2 Database Engine (com.h2database:h2:2.1.210 - https://h2database.com) + * juniversalchardet (com.github.albfernandez:juniversalchardet:2.4.0 - https://github.com/albfernandez/juniversalchardet) + * H2 Database Engine (com.h2database:h2:2.2.224 - https://h2database.com) * Saxon-HE (net.sf.saxon:Saxon-HE:9.8.0-14 - http://www.saxonica.com/) - * Javassist (org.javassist:javassist:3.25.0-GA - http://www.javassist.org/) + * Javassist (org.javassist:javassist:3.29.2-GA - http://www.javassist.org/) * Mozilla Rhino (org.mozilla:rhino:1.7.7.2 - https://developer.mozilla.org/en/Rhino) Public Domain: - * jersey-core-client (org.glassfish.jersey.core:jersey-client:2.35 - https://projects.eclipse.org/projects/ee4j.jersey/jersey-client) - * jersey-core-common (org.glassfish.jersey.core:jersey-common:2.35 - https://projects.eclipse.org/projects/ee4j.jersey/jersey-common) - * jersey-inject-hk2 (org.glassfish.jersey.inject:jersey-hk2:2.35 - https://projects.eclipse.org/projects/ee4j.jersey/project/jersey-hk2) + * jersey-core-client (org.glassfish.jersey.core:jersey-client:3.1.5 - https://projects.eclipse.org/projects/ee4j.jersey/jersey-client) + * jersey-core-common (org.glassfish.jersey.core:jersey-common:3.1.5 - https://projects.eclipse.org/projects/ee4j.jersey/jersey-common) + * jersey-inject-hk2 (org.glassfish.jersey.inject:jersey-hk2:3.1.5 - https://projects.eclipse.org/projects/ee4j.jersey/project/jersey-hk2) + * jersey-media-multipart (org.glassfish.jersey.media:jersey-media-multipart:3.1.3 - https://projects.eclipse.org/projects/ee4j.jersey/project/jersey-media-multipart) * HdrHistogram (org.hdrhistogram:HdrHistogram:2.1.12 - http://hdrhistogram.github.io/HdrHistogram/) - * JSON in Java (org.json:json:20230227 - https://github.com/douglascrockford/JSON-java) + * JSON in Java (org.json:json:20231013 - https://github.com/douglascrockford/JSON-java) * LatencyUtils (org.latencyutils:LatencyUtils:2.0.3 - http://latencyutils.github.io/LatencyUtils/) * Reflections (org.reflections:reflections:0.9.12 - http://github.com/ronmamo/reflections) * XZ for Java (org.tukaani:xz:1.9 - 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* jersey-core-client (org.glassfish.jersey.core:jersey-client:2.35 - https://projects.eclipse.org/projects/ee4j.jersey/jersey-client) - * jersey-inject-hk2 (org.glassfish.jersey.inject:jersey-hk2:2.35 - https://projects.eclipse.org/projects/ee4j.jersey/project/jersey-hk2) + * jersey-core-client (org.glassfish.jersey.core:jersey-client:3.1.5 - https://projects.eclipse.org/projects/ee4j.jersey/jersey-client) + * jersey-inject-hk2 (org.glassfish.jersey.inject:jersey-hk2:3.1.5 - https://projects.eclipse.org/projects/ee4j.jersey/project/jersey-hk2) + * jersey-media-multipart (org.glassfish.jersey.media:jersey-media-multipart:3.1.3 - https://projects.eclipse.org/projects/ee4j.jersey/project/jersey-media-multipart) diff --git a/docker-compose-cli.yml b/docker-compose-cli.yml index 72b416d13454..dd77bdf108ca 100644 --- a/docker-compose-cli.yml +++ b/docker-compose-cli.yml @@ -1,4 +1,3 @@ -version: "3.7" networks: # Default to using network named 'dspacenet' from docker-compose.yml. # Its full name will be prepended with the project name (e.g. "-p d7" means it will be named "d7_dspacenet") diff --git a/docker-compose.yml b/docker-compose.yml index 8cd8b372eed5..94d3157c947e 100644 --- a/docker-compose.yml +++ b/docker-compose.yml @@ -1,4 +1,3 @@ -version: '3.7' networks: dspacenet: ipam: @@ -29,7 +28,7 @@ services: # from the host machine. This IP range MUST correspond to the 'dspacenet' subnet defined above. proxies__P__trusted__P__ipranges: '172.23.0' LOGGING_CONFIG: /dspace/config/log4j2-container.xml - image: "${DOCKER_OWNER:-dspace}/dspace:${DSPACE_VER:-dspace-8_x-test}" + image: "${DOCKER_OWNER:-dspace}/dspace:${DSPACE_VER:-latest-test}" build: context: . dockerfile: Dockerfile.test @@ -40,8 +39,6 @@ services: ports: - published: 8080 target: 8080 - - published: 8009 - target: 8009 - published: 8000 target: 8000 stdin_open: true @@ -55,14 +52,14 @@ services: # Ensure that the database is ready BEFORE starting tomcat # 1. While a TCP connection to dspacedb port 5432 is not available, continue to sleep # 2. Then, run database migration to init database tables - # 3. Finally, start Tomcat + # 3. Finally, start DSpace entrypoint: - /bin/bash - '-c' - | while (! /dev/null 2>&1; do sleep 1; done; /dspace/bin/dspace database migrate - catalina.sh run + java -jar /dspace/webapps/server-boot.jar --dspace.dir=/dspace # DSpace PostgreSQL database container dspacedb: container_name: dspacedb diff --git a/dspace-api/pom.xml b/dspace-api/pom.xml index ff5249c504b7..2f899c1df3d7 100644 --- a/dspace-api/pom.xml +++ b/dspace-api/pom.xml @@ -54,21 +54,21 @@ - org.hibernate + org.hibernate.orm hibernate-jpamodelgen ${hibernate.version} - javax.xml.bind - jaxb-api + jakarta.xml.bind + jakarta.xml.bind-api ${jaxb-api.version} - javax.annotation - javax.annotation-api - ${javax-annotation.version} + jakarta.annotation + jakarta.annotation-api + ${jakarta-annotation.version} @@ -177,7 +177,7 @@ org.codehaus.mojo jaxb2-maven-plugin - 2.5.0 + 3.1.0 workflow-curation @@ -342,18 +342,15 @@ log4j-api - org.hibernate + org.hibernate.orm hibernate-core - - - - org.javassist - javassist - - - org.hibernate + org.hibernate.orm + hibernate-jpamodelgen + + + org.hibernate.orm hibernate-jcache @@ -377,26 +374,16 @@ com.fasterxml.jackson.datatype jackson-datatype-jsr310 - 2.13.5 javax.cache cache-api - - org.hibernate - hibernate-jpamodelgen - org.hibernate.validator hibernate-validator-cdi ${hibernate-validator.version} - - org.hibernate.javax.persistence - hibernate-jpa-2.1-api - 1.0.2.Final - org.springframework @@ -407,30 +394,26 @@ net.handle handle + net.cnri cnri-servlet-container + runtime - - - org.ow2.asm - asm-commons - - - - org.bouncycastle - bcpkix-jdk15on - + - org.bouncycastle - bcprov-jdk15on + org.mortbay.jasper + apache-jsp - + + org.eclipse.jetty jetty-server + runtime org.dspace @@ -440,12 +423,6 @@ org.apache.jena apache-jena-libs pom - - - log4j - log4j - - commons-cli @@ -463,10 +440,6 @@ org.apache.commons commons-dbcp2 - - commons-fileupload - commons-fileupload - commons-io @@ -485,17 +458,26 @@ commons-validator - com.sun.mail - javax.mail + jakarta.mail + jakarta.mail-api + provided + + + org.eclipse.angus + jakarta.mail - javax.servlet - javax.servlet-api + jakarta.servlet + jakarta.servlet-api provided - javax.annotation - javax.annotation-api + jakarta.annotation + jakarta.annotation-api + + + jakarta.el + jakarta.el-api jaxen @@ -602,6 +584,11 @@ com.google.j2objc j2objc-annotations + + + org.antlr + antlr4-runtime + @@ -682,7 +669,12 @@ org.flywaydb flyway-core - 8.5.13 + ${flyway.version} + + + org.flywaydb + flyway-database-postgresql + ${flyway.version} @@ -722,23 +714,22 @@ joda-time - javax.inject - javax.inject - 1 - jar + jakarta.inject + jakarta.inject-api + 2.0.1 - javax.xml.bind - jaxb-api + jakarta.xml.bind + jakarta.xml.bind-api org.glassfish.jaxb jaxb-runtime - + org.glassfish.jersey.core jersey-client @@ -759,23 +750,14 @@ 1.12.261 + + - org.orcid - orcid-model - 3.0.7 + org.dspace + orcid-model-jakarta + 3.3.0 - - javax.validation - validation-api - - - com.fasterxml.jackson.jaxrs - jackson-jaxrs-json-provider - - - org.yaml - snakeyaml - org.javassist javassist @@ -923,7 +905,17 @@ com.fasterxml.jackson.datatype - jackson-datatype-jsr310 + jackson-datatype-jsr310 + + + + javax.xml.bind + jaxb-api + + + + javax.servlet + javax.servlet-api @@ -944,7 +936,6 @@ - @@ -990,7 +981,7 @@ org.xmlunit xmlunit-core - 2.9.1 + 2.10.0 test @@ -999,14 +990,9 @@ 2.2.14 - jakarta.xml.bind - jakarta.xml.bind-api - 2.3.3 - - - javax.validation - validation-api - 2.0.1.Final + jakarta.validation + jakarta.validation-api + 3.0.2 io.swagger diff --git a/dspace-api/src/main/java/org/dspace/alerts/SystemWideAlert.java b/dspace-api/src/main/java/org/dspace/alerts/SystemWideAlert.java index f56cbdcce9e9..432c633ea591 100644 --- a/dspace-api/src/main/java/org/dspace/alerts/SystemWideAlert.java +++ b/dspace-api/src/main/java/org/dspace/alerts/SystemWideAlert.java @@ -8,17 +8,17 @@ package org.dspace.alerts; import java.util.Date; -import javax.persistence.Cacheable; -import javax.persistence.Column; -import javax.persistence.Entity; -import javax.persistence.GeneratedValue; -import javax.persistence.GenerationType; -import javax.persistence.Id; -import javax.persistence.SequenceGenerator; -import javax.persistence.Table; -import javax.persistence.Temporal; -import javax.persistence.TemporalType; +import jakarta.persistence.Cacheable; +import jakarta.persistence.Column; +import jakarta.persistence.Entity; +import jakarta.persistence.GeneratedValue; +import jakarta.persistence.GenerationType; +import jakarta.persistence.Id; +import jakarta.persistence.SequenceGenerator; +import jakarta.persistence.Table; +import jakarta.persistence.Temporal; +import jakarta.persistence.TemporalType; import org.apache.commons.lang3.builder.EqualsBuilder; import org.apache.commons.lang3.builder.HashCodeBuilder; import org.dspace.core.ReloadableEntity; diff --git a/dspace-api/src/main/java/org/dspace/alerts/dao/impl/SystemWideAlertDAOImpl.java b/dspace-api/src/main/java/org/dspace/alerts/dao/impl/SystemWideAlertDAOImpl.java index 13a0e0af236a..79dc1bcf27a3 100644 --- a/dspace-api/src/main/java/org/dspace/alerts/dao/impl/SystemWideAlertDAOImpl.java +++ b/dspace-api/src/main/java/org/dspace/alerts/dao/impl/SystemWideAlertDAOImpl.java @@ -9,10 +9,10 @@ import java.sql.SQLException; import java.util.List; -import javax.persistence.criteria.CriteriaBuilder; -import javax.persistence.criteria.CriteriaQuery; -import javax.persistence.criteria.Root; +import jakarta.persistence.criteria.CriteriaBuilder; +import jakarta.persistence.criteria.CriteriaQuery; +import jakarta.persistence.criteria.Root; import org.dspace.alerts.SystemWideAlert; import org.dspace.alerts.SystemWideAlert_; import org.dspace.alerts.dao.SystemWideAlertDAO; diff --git a/dspace-api/src/main/java/org/dspace/app/bulkedit/MetadataImport.java b/dspace-api/src/main/java/org/dspace/app/bulkedit/MetadataImport.java index 7f7c64ff5ca8..33a4fc1e9f42 100644 --- a/dspace-api/src/main/java/org/dspace/app/bulkedit/MetadataImport.java +++ b/dspace-api/src/main/java/org/dspace/app/bulkedit/MetadataImport.java @@ -20,8 +20,8 @@ import java.util.Optional; import java.util.Set; import java.util.UUID; -import javax.annotation.Nullable; +import jakarta.annotation.Nullable; import org.apache.commons.cli.ParseException; import org.apache.commons.lang3.StringUtils; import org.apache.logging.log4j.Logger; @@ -830,8 +830,10 @@ protected void compareAndUpdate(Context c, Item item, String[] fromCSV, boolean addRelationships(c, item, element, values); } else { itemService.clearMetadata(c, item, schema, element, qualifier, language); - itemService.addMetadata(c, item, schema, element, qualifier, - language, values, authorities, confidences); + if (!values.isEmpty()) { + itemService.addMetadata(c, item, schema, element, qualifier, + language, values, authorities, confidences); + } itemService.update(c, item); } } @@ -1126,8 +1128,8 @@ protected void add(Context c, String[] fromCSV, String md, BulkEditChange change .getAuthoritySeparator() + dcv.getConfidence(); } - // Add it - if ((value != null) && (!"".equals(value))) { + // Add it, if value is not blank + if (value != null && StringUtils.isNotBlank(value)) { changes.registerAdd(dcv); } } diff --git a/dspace-api/src/main/java/org/dspace/app/itemexport/ItemExportServiceImpl.java b/dspace-api/src/main/java/org/dspace/app/itemexport/ItemExportServiceImpl.java index 7c80e1ea7dc6..9eaabc20e862 100644 --- a/dspace-api/src/main/java/org/dspace/app/itemexport/ItemExportServiceImpl.java +++ b/dspace-api/src/main/java/org/dspace/app/itemexport/ItemExportServiceImpl.java @@ -31,8 +31,8 @@ import java.util.UUID; import java.util.zip.ZipEntry; import java.util.zip.ZipOutputStream; -import javax.mail.MessagingException; +import jakarta.mail.MessagingException; import org.apache.commons.lang3.StringUtils; import org.apache.logging.log4j.Logger; import org.dspace.app.itemexport.service.ItemExportService; diff --git a/dspace-api/src/main/java/org/dspace/app/itemexport/service/ItemExportService.java b/dspace-api/src/main/java/org/dspace/app/itemexport/service/ItemExportService.java index 6ec1027709bb..cc53d952e79b 100644 --- a/dspace-api/src/main/java/org/dspace/app/itemexport/service/ItemExportService.java +++ b/dspace-api/src/main/java/org/dspace/app/itemexport/service/ItemExportService.java @@ -11,8 +11,8 @@ import java.util.Date; import java.util.Iterator; import java.util.List; -import javax.mail.MessagingException; +import jakarta.mail.MessagingException; import org.dspace.content.DSpaceObject; import org.dspace.content.Item; import org.dspace.core.Context; diff --git a/dspace-api/src/main/java/org/dspace/app/itemimport/ItemImportServiceImpl.java b/dspace-api/src/main/java/org/dspace/app/itemimport/ItemImportServiceImpl.java index 255f4bdcbb15..087a33026151 100644 --- a/dspace-api/src/main/java/org/dspace/app/itemimport/ItemImportServiceImpl.java +++ b/dspace-api/src/main/java/org/dspace/app/itemimport/ItemImportServiceImpl.java @@ -46,7 +46,6 @@ import java.util.UUID; import java.util.zip.ZipEntry; import java.util.zip.ZipFile; -import javax.mail.MessagingException; import javax.xml.parsers.DocumentBuilder; import javax.xml.parsers.DocumentBuilderFactory; import javax.xml.parsers.ParserConfigurationException; @@ -56,6 +55,7 @@ import javax.xml.xpath.XPathExpressionException; import javax.xml.xpath.XPathFactory; +import jakarta.mail.MessagingException; import org.apache.commons.collections4.ComparatorUtils; import org.apache.commons.io.FileDeleteStrategy; import org.apache.commons.io.FileUtils; @@ -1743,7 +1743,8 @@ protected void processOptions(Context c, Item myItem, List options) } else { logInfo("\tSetting special permissions for " + bitstreamName); - setPermission(c, myGroup, actionID, bs); + String rpType = useWorkflow ? ResourcePolicy.TYPE_SUBMISSION : ResourcePolicy.TYPE_INHERITED; + setPermission(c, myGroup, rpType, actionID, bs); } } @@ -1801,24 +1802,25 @@ protected void processOptions(Context c, Item myItem, List options) * * @param c DSpace Context * @param g Dspace Group + * @param rpType resource policy type string * @param actionID action identifier * @param bs Bitstream * @throws SQLException if database error * @throws AuthorizeException if authorization error * @see org.dspace.core.Constants */ - protected void setPermission(Context c, Group g, int actionID, Bitstream bs) + protected void setPermission(Context c, Group g, String rpType, int actionID, Bitstream bs) throws SQLException, AuthorizeException { if (!isTest) { // remove the default policy authorizeService.removeAllPolicies(c, bs); // add the policy - ResourcePolicy rp = resourcePolicyService.create(c); + ResourcePolicy rp = resourcePolicyService.create(c, null, g); rp.setdSpaceObject(bs); rp.setAction(actionID); - rp.setGroup(g); + rp.setRpType(rpType); resourcePolicyService.update(c, rp); } else { @@ -1957,58 +1959,57 @@ public String unzip(File zipfile, String destDir) throws IOException { try { while (entries.hasMoreElements()) { entry = entries.nextElement(); + String entryName = entry.getName(); + File outFile = new File(zipDir + entryName); + // Verify that this file/directory will be extracted into our zipDir (and not somewhere else!) + if (!outFile.toPath().normalize().startsWith(zipDir)) { + throw new IOException("Bad zip entry: '" + entryName + + "' in file '" + zipfile.getAbsolutePath() + "'!" + + " Cannot process this file or directory."); + } if (entry.isDirectory()) { - if (!new File(zipDir + entry.getName()).mkdirs()) { + if (!outFile.mkdirs()) { logError("Unable to create contents directory: " + zipDir + entry.getName()); } } else { - String entryName = entry.getName(); - File outFile = new File(zipDir + entryName); - // Verify that this file will be extracted into our zipDir (and not somewhere else!) - if (!outFile.toPath().normalize().startsWith(zipDir)) { - throw new IOException("Bad zip entry: '" + entryName - + "' in file '" + zipfile.getAbsolutePath() + "'!" - + " Cannot process this file."); - } else { - logInfo("Extracting file: " + entryName); + logInfo("Extracting file: " + entryName); - int index = entryName.lastIndexOf('/'); - if (index == -1) { - // Was it created on Windows instead? - index = entryName.lastIndexOf('\\'); + int index = entryName.lastIndexOf('/'); + if (index == -1) { + // Was it created on Windows instead? + index = entryName.lastIndexOf('\\'); + } + if (index > 0) { + File dir = new File(zipDir + entryName.substring(0, index)); + if (!dir.exists() && !dir.mkdirs()) { + logError("Unable to create directory: " + dir.getAbsolutePath()); } - if (index > 0) { - File dir = new File(zipDir + entryName.substring(0, index)); - if (!dir.exists() && !dir.mkdirs()) { - logError("Unable to create directory: " + dir.getAbsolutePath()); - } - //Entries could have too many directories, and we need to adjust the sourcedir - // file1.zip (SimpleArchiveFormat / item1 / contents|dublin_core|... - // SimpleArchiveFormat / item2 / contents|dublin_core|... - // or - // file2.zip (item1 / contents|dublin_core|... - // item2 / contents|dublin_core|... - - //regex supports either windows or *nix file paths - String[] entryChunks = entryName.split("/|\\\\"); - if (entryChunks.length > 2) { - if (StringUtils.equals(sourceDirForZip, sourcedir)) { - sourceDirForZip = sourcedir + "/" + entryChunks[0]; - } + //Entries could have too many directories, and we need to adjust the sourcedir + // file1.zip (SimpleArchiveFormat / item1 / contents|dublin_core|... + // SimpleArchiveFormat / item2 / contents|dublin_core|... + // or + // file2.zip (item1 / contents|dublin_core|... + // item2 / contents|dublin_core|... + + //regex supports either windows or *nix file paths + String[] entryChunks = entryName.split("/|\\\\"); + if (entryChunks.length > 2) { + if (StringUtils.equals(sourceDirForZip, sourcedir)) { + sourceDirForZip = sourcedir + "/" + entryChunks[0]; } } - byte[] buffer = new byte[1024]; - int len; - InputStream in = zf.getInputStream(entry); - BufferedOutputStream out = new BufferedOutputStream( - new FileOutputStream(outFile)); - while ((len = in.read(buffer)) >= 0) { - out.write(buffer, 0, len); - } - in.close(); - out.close(); } + byte[] buffer = new byte[1024]; + int len; + InputStream in = zf.getInputStream(entry); + BufferedOutputStream out = new BufferedOutputStream( + new FileOutputStream(outFile)); + while ((len = in.read(buffer)) >= 0) { + out.write(buffer, 0, len); + } + in.close(); + out.close(); } } } finally { @@ -2233,7 +2234,7 @@ public void emailSuccessMessage(Context context, EPerson eperson, String fileName) throws MessagingException { try { Locale supportedLocale = I18nUtil.getEPersonLocale(eperson); - Email email = Email.getEmail(I18nUtil.getEmailFilename(supportedLocale, "bte_batch_import_success")); + Email email = Email.getEmail(I18nUtil.getEmailFilename(supportedLocale, "batch_import_success")); email.addRecipient(eperson.getEmail()); email.addArgument(fileName); @@ -2249,7 +2250,7 @@ public void emailErrorMessage(EPerson eperson, String error) logError("An error occurred during item import, the user will be notified. " + error); try { Locale supportedLocale = I18nUtil.getEPersonLocale(eperson); - Email email = Email.getEmail(I18nUtil.getEmailFilename(supportedLocale, "bte_batch_import_error")); + Email email = Email.getEmail(I18nUtil.getEmailFilename(supportedLocale, "batch_import_error")); email.addRecipient(eperson.getEmail()); email.addArgument(error); email.addArgument(configurationService.getProperty("dspace.ui.url") + "/feedback"); diff --git a/dspace-api/src/main/java/org/dspace/app/itemimport/service/ItemImportService.java b/dspace-api/src/main/java/org/dspace/app/itemimport/service/ItemImportService.java index e99ece31b9bb..90cb6f9b803a 100644 --- a/dspace-api/src/main/java/org/dspace/app/itemimport/service/ItemImportService.java +++ b/dspace-api/src/main/java/org/dspace/app/itemimport/service/ItemImportService.java @@ -10,8 +10,8 @@ import java.io.File; import java.io.IOException; import java.util.List; -import javax.mail.MessagingException; +import jakarta.mail.MessagingException; import org.dspace.app.itemimport.BatchUpload; import org.dspace.content.Collection; import org.dspace.core.Context; diff --git a/dspace-api/src/main/java/org/dspace/app/itemupdate/DeleteBitstreamsAction.java b/dspace-api/src/main/java/org/dspace/app/itemupdate/DeleteBitstreamsAction.java index cb5dcfb75dc0..65157f5207e7 100644 --- a/dspace-api/src/main/java/org/dspace/app/itemupdate/DeleteBitstreamsAction.java +++ b/dspace-api/src/main/java/org/dspace/app/itemupdate/DeleteBitstreamsAction.java @@ -70,16 +70,19 @@ public void execute(Context context, ItemArchive itarch, boolean isTest, } } - if (alterProvenance) { + if (alterProvenance && !bundles.isEmpty()) { DtoMetadata dtom = DtoMetadata.create("dc.description.provenance", "en", ""); String append = "Bitstream " + bs.getName() + " deleted on " + DCDate .getCurrent() + "; "; - Item item = bundles.iterator().next().getItems().iterator().next(); - ItemUpdate.pr("Append provenance with: " + append); + List items = bundles.iterator().next().getItems(); + if (!items.isEmpty()) { + Item item = items.iterator().next(); + ItemUpdate.pr("Append provenance with: " + append); - if (!isTest) { - MetadataUtilities.appendMetadata(context, item, dtom, false, append); + if (!isTest) { + MetadataUtilities.appendMetadata(context, item, dtom, false, append); + } } } } diff --git a/dspace-api/src/main/java/org/dspace/app/ldn/LDNMessageConsumer.java b/dspace-api/src/main/java/org/dspace/app/ldn/LDNMessageConsumer.java index 9e03cf73927e..210aaa6c9c97 100644 --- a/dspace-api/src/main/java/org/dspace/app/ldn/LDNMessageConsumer.java +++ b/dspace-api/src/main/java/org/dspace/app/ldn/LDNMessageConsumer.java @@ -163,6 +163,9 @@ private void appendGeneratedMessage(LDN ldn, LDNMessageEntity ldnMessage, String ldn.addArgument(generateBitstreamDownloadUrl(item)); ldn.addArgument(getBitstreamMimeType(findPrimaryBitstream(item))); ldn.addArgument(ldnMessage.getID()); + ldn.addArgument(getRelationUri(item)); + ldn.addArgument("http://purl.org/vocab/frbr/core#supplement"); + ldn.addArgument(format("urn:uuid:%s", UUID.randomUUID())); ldnMessage.setMessage(ldn.generateLDNMessage()); } @@ -179,6 +182,15 @@ private String getIdentifierUri(Item item) { .orElse(""); } + private String getRelationUri(Item item) { + String relationMetadata = configurationService.getProperty("ldn.notify.relation.metadata", "dc.relation"); + return itemService.getMetadataByMetadataString(item, relationMetadata) + .stream() + .findFirst() + .map(MetadataValue::getValue) + .orElse(""); + } + private String generateBitstreamDownloadUrl(Item item) { String uiUrl = getUiUrl(); return findPrimaryBitstream(item) diff --git a/dspace-api/src/main/java/org/dspace/app/ldn/LDNMessageEntity.java b/dspace-api/src/main/java/org/dspace/app/ldn/LDNMessageEntity.java index 9fd63e62e47e..27257455e0ce 100644 --- a/dspace-api/src/main/java/org/dspace/app/ldn/LDNMessageEntity.java +++ b/dspace-api/src/main/java/org/dspace/app/ldn/LDNMessageEntity.java @@ -9,15 +9,15 @@ import java.lang.reflect.Field; import java.util.Date; -import javax.persistence.Column; -import javax.persistence.Entity; -import javax.persistence.Id; -import javax.persistence.JoinColumn; -import javax.persistence.ManyToOne; -import javax.persistence.Table; -import javax.persistence.Temporal; -import javax.persistence.TemporalType; +import jakarta.persistence.Column; +import jakarta.persistence.Entity; +import jakarta.persistence.Id; +import jakarta.persistence.JoinColumn; +import jakarta.persistence.ManyToOne; +import jakarta.persistence.Table; +import jakarta.persistence.Temporal; +import jakarta.persistence.TemporalType; import org.dspace.content.DSpaceObject; import org.dspace.core.ReloadableEntity; @@ -88,7 +88,7 @@ public class LDNMessageEntity implements ReloadableEntity { @JoinColumn(name = "object", referencedColumnName = "uuid") private DSpaceObject object; - @Column(name = "message", nullable = false, columnDefinition = "text") + @Column(name = "message", columnDefinition = "text") private String message; @Column(name = "type") diff --git a/dspace-api/src/main/java/org/dspace/app/ldn/NotifyPatternToTrigger.java b/dspace-api/src/main/java/org/dspace/app/ldn/NotifyPatternToTrigger.java index b393d8bedbc5..da23471a1c66 100644 --- a/dspace-api/src/main/java/org/dspace/app/ldn/NotifyPatternToTrigger.java +++ b/dspace-api/src/main/java/org/dspace/app/ldn/NotifyPatternToTrigger.java @@ -7,16 +7,15 @@ */ package org.dspace.app.ldn; -import javax.persistence.Column; -import javax.persistence.Entity; -import javax.persistence.GeneratedValue; -import javax.persistence.GenerationType; -import javax.persistence.Id; -import javax.persistence.JoinColumn; -import javax.persistence.ManyToOne; -import javax.persistence.SequenceGenerator; -import javax.persistence.Table; - +import jakarta.persistence.Column; +import jakarta.persistence.Entity; +import jakarta.persistence.GeneratedValue; +import jakarta.persistence.GenerationType; +import jakarta.persistence.Id; +import jakarta.persistence.JoinColumn; +import jakarta.persistence.ManyToOne; +import jakarta.persistence.SequenceGenerator; +import jakarta.persistence.Table; import org.dspace.content.Item; import org.dspace.core.ReloadableEntity; diff --git a/dspace-api/src/main/java/org/dspace/app/ldn/NotifyServiceEntity.java b/dspace-api/src/main/java/org/dspace/app/ldn/NotifyServiceEntity.java index 206ed16fa00e..c939256b52ba 100644 --- a/dspace-api/src/main/java/org/dspace/app/ldn/NotifyServiceEntity.java +++ b/dspace-api/src/main/java/org/dspace/app/ldn/NotifyServiceEntity.java @@ -9,15 +9,15 @@ import java.math.BigDecimal; import java.util.List; -import javax.persistence.Column; -import javax.persistence.Entity; -import javax.persistence.GeneratedValue; -import javax.persistence.GenerationType; -import javax.persistence.Id; -import javax.persistence.OneToMany; -import javax.persistence.SequenceGenerator; -import javax.persistence.Table; +import jakarta.persistence.Column; +import jakarta.persistence.Entity; +import jakarta.persistence.GeneratedValue; +import jakarta.persistence.GenerationType; +import jakarta.persistence.Id; +import jakarta.persistence.OneToMany; +import jakarta.persistence.SequenceGenerator; +import jakarta.persistence.Table; import org.dspace.core.ReloadableEntity; /** diff --git a/dspace-api/src/main/java/org/dspace/app/ldn/NotifyServiceInboundPattern.java b/dspace-api/src/main/java/org/dspace/app/ldn/NotifyServiceInboundPattern.java index 0c367d505131..329d6cb11cec 100644 --- a/dspace-api/src/main/java/org/dspace/app/ldn/NotifyServiceInboundPattern.java +++ b/dspace-api/src/main/java/org/dspace/app/ldn/NotifyServiceInboundPattern.java @@ -7,16 +7,15 @@ */ package org.dspace.app.ldn; -import javax.persistence.Column; -import javax.persistence.Entity; -import javax.persistence.GeneratedValue; -import javax.persistence.GenerationType; -import javax.persistence.Id; -import javax.persistence.JoinColumn; -import javax.persistence.ManyToOne; -import javax.persistence.SequenceGenerator; -import javax.persistence.Table; - +import jakarta.persistence.Column; +import jakarta.persistence.Entity; +import jakarta.persistence.GeneratedValue; +import jakarta.persistence.GenerationType; +import jakarta.persistence.Id; +import jakarta.persistence.JoinColumn; +import jakarta.persistence.ManyToOne; +import jakarta.persistence.SequenceGenerator; +import jakarta.persistence.Table; import org.dspace.core.ReloadableEntity; /** diff --git a/dspace-api/src/main/java/org/dspace/app/ldn/action/LDNRelationCorrectionAction.java b/dspace-api/src/main/java/org/dspace/app/ldn/action/LDNRelationCorrectionAction.java index 0c2f5dfc1729..f11a42ab2f90 100644 --- a/dspace-api/src/main/java/org/dspace/app/ldn/action/LDNRelationCorrectionAction.java +++ b/dspace-api/src/main/java/org/dspace/app/ldn/action/LDNRelationCorrectionAction.java @@ -10,6 +10,7 @@ import java.math.BigDecimal; import java.sql.SQLException; import java.util.Date; +import java.util.Set; import com.fasterxml.jackson.databind.ObjectMapper; import org.apache.logging.log4j.LogManager; @@ -57,7 +58,12 @@ public LDNActionStatus execute(Context context, Notification notification, Item QAEvent qaEvent = null; if (notification.getObject() != null) { NotifyMessageDTO message = new NotifyMessageDTO(); - message.setHref(notification.getObject().getAsSubject()); + if (notification.getType().containsAll(Set.of("Announce", + "coar-notify:RelationshipAction"))) { + message.setHref(notification.getObject().getAsSubject()); + } else { + message.setHref(notification.getObject().getAsObject()); + } message.setRelationship(notification.getObject().getAsRelationship()); if (notification.getOrigin() != null) { message.setServiceId(notification.getOrigin().getId()); diff --git a/dspace-api/src/main/java/org/dspace/app/ldn/action/SendLDNMessageAction.java b/dspace-api/src/main/java/org/dspace/app/ldn/action/SendLDNMessageAction.java index 16fb43317e2c..c0ecf04304b8 100644 --- a/dspace-api/src/main/java/org/dspace/app/ldn/action/SendLDNMessageAction.java +++ b/dspace-api/src/main/java/org/dspace/app/ldn/action/SendLDNMessageAction.java @@ -58,7 +58,7 @@ public LDNActionStatus execute(Context context, Notification notification, Item String url = notification.getTarget().getInbox(); HttpPost httpPost = new HttpPost(url); - httpPost.addHeader("Content-Type", "application, ld+json"); + httpPost.addHeader("Content-Type", "application/ld+json"); ObjectMapper mapper = new ObjectMapper(); httpPost.setEntity(new StringEntity(mapper.writeValueAsString(notification), "UTF-8")); diff --git a/dspace-api/src/main/java/org/dspace/app/ldn/dao/impl/LDNMessageDaoImpl.java b/dspace-api/src/main/java/org/dspace/app/ldn/dao/impl/LDNMessageDaoImpl.java index f3b620a706a2..d811f6d39f34 100644 --- a/dspace-api/src/main/java/org/dspace/app/ldn/dao/impl/LDNMessageDaoImpl.java +++ b/dspace-api/src/main/java/org/dspace/app/ldn/dao/impl/LDNMessageDaoImpl.java @@ -12,12 +12,12 @@ import java.util.Date; import java.util.LinkedList; import java.util.List; -import javax.persistence.criteria.CriteriaBuilder; -import javax.persistence.criteria.CriteriaQuery; -import javax.persistence.criteria.Order; -import javax.persistence.criteria.Predicate; -import javax.persistence.criteria.Root; +import jakarta.persistence.criteria.CriteriaBuilder; +import jakarta.persistence.criteria.CriteriaQuery; +import jakarta.persistence.criteria.Order; +import jakarta.persistence.criteria.Predicate; +import jakarta.persistence.criteria.Root; import org.apache.logging.log4j.Logger; import org.dspace.app.ldn.LDNMessageEntity; import org.dspace.app.ldn.LDNMessageEntity_; diff --git a/dspace-api/src/main/java/org/dspace/app/ldn/dao/impl/NotifyPatternToTriggerDaoImpl.java b/dspace-api/src/main/java/org/dspace/app/ldn/dao/impl/NotifyPatternToTriggerDaoImpl.java index 47c584518b14..53cbeabe005a 100644 --- a/dspace-api/src/main/java/org/dspace/app/ldn/dao/impl/NotifyPatternToTriggerDaoImpl.java +++ b/dspace-api/src/main/java/org/dspace/app/ldn/dao/impl/NotifyPatternToTriggerDaoImpl.java @@ -9,10 +9,10 @@ import java.sql.SQLException; import java.util.List; -import javax.persistence.criteria.CriteriaBuilder; -import javax.persistence.criteria.CriteriaQuery; -import javax.persistence.criteria.Root; +import jakarta.persistence.criteria.CriteriaBuilder; +import jakarta.persistence.criteria.CriteriaQuery; +import jakarta.persistence.criteria.Root; import org.dspace.app.ldn.NotifyPatternToTrigger; import org.dspace.app.ldn.NotifyPatternToTrigger_; import org.dspace.app.ldn.dao.NotifyPatternToTriggerDao; diff --git a/dspace-api/src/main/java/org/dspace/app/ldn/dao/impl/NotifyServiceDaoImpl.java b/dspace-api/src/main/java/org/dspace/app/ldn/dao/impl/NotifyServiceDaoImpl.java index cac804ef0c1f..bb4cf791da27 100644 --- a/dspace-api/src/main/java/org/dspace/app/ldn/dao/impl/NotifyServiceDaoImpl.java +++ b/dspace-api/src/main/java/org/dspace/app/ldn/dao/impl/NotifyServiceDaoImpl.java @@ -9,11 +9,11 @@ import java.sql.SQLException; import java.util.List; -import javax.persistence.criteria.CriteriaBuilder; -import javax.persistence.criteria.CriteriaQuery; -import javax.persistence.criteria.Join; -import javax.persistence.criteria.Root; +import jakarta.persistence.criteria.CriteriaBuilder; +import jakarta.persistence.criteria.CriteriaQuery; +import jakarta.persistence.criteria.Join; +import jakarta.persistence.criteria.Root; import org.dspace.app.ldn.NotifyServiceEntity; import org.dspace.app.ldn.NotifyServiceEntity_; import org.dspace.app.ldn.NotifyServiceInboundPattern; diff --git a/dspace-api/src/main/java/org/dspace/app/ldn/dao/impl/NotifyServiceInboundPatternDaoImpl.java b/dspace-api/src/main/java/org/dspace/app/ldn/dao/impl/NotifyServiceInboundPatternDaoImpl.java index 5168fd0bedf8..dc3dc1c74491 100644 --- a/dspace-api/src/main/java/org/dspace/app/ldn/dao/impl/NotifyServiceInboundPatternDaoImpl.java +++ b/dspace-api/src/main/java/org/dspace/app/ldn/dao/impl/NotifyServiceInboundPatternDaoImpl.java @@ -9,10 +9,10 @@ import java.sql.SQLException; import java.util.List; -import javax.persistence.criteria.CriteriaBuilder; -import javax.persistence.criteria.CriteriaQuery; -import javax.persistence.criteria.Root; +import jakarta.persistence.criteria.CriteriaBuilder; +import jakarta.persistence.criteria.CriteriaQuery; +import jakarta.persistence.criteria.Root; import org.dspace.app.ldn.NotifyServiceEntity; import org.dspace.app.ldn.NotifyServiceInboundPattern; import org.dspace.app.ldn.NotifyServiceInboundPattern_; diff --git a/dspace-api/src/main/java/org/dspace/app/ldn/model/Citation.java b/dspace-api/src/main/java/org/dspace/app/ldn/model/Citation.java index c6629f5e7b91..7abe5c8ef44a 100644 --- a/dspace-api/src/main/java/org/dspace/app/ldn/model/Citation.java +++ b/dspace-api/src/main/java/org/dspace/app/ldn/model/Citation.java @@ -18,7 +18,7 @@ public class Citation extends Base { @JsonProperty("ietf:cite-as") private String ietfCiteAs; - @JsonProperty("url") + @JsonProperty("ietf:item") private Url url; /** diff --git a/dspace-api/src/main/java/org/dspace/app/ldn/processor/LDNMetadataProcessor.java b/dspace-api/src/main/java/org/dspace/app/ldn/processor/LDNMetadataProcessor.java index 223c8b7a3422..43c50173ee61 100644 --- a/dspace-api/src/main/java/org/dspace/app/ldn/processor/LDNMetadataProcessor.java +++ b/dspace-api/src/main/java/org/dspace/app/ldn/processor/LDNMetadataProcessor.java @@ -13,6 +13,7 @@ import java.util.ArrayList; import java.util.List; import java.util.Objects; +import java.util.Set; import java.util.UUID; import org.apache.http.HttpStatus; @@ -22,6 +23,7 @@ import org.dspace.app.ldn.action.LDNAction; import org.dspace.app.ldn.action.LDNActionStatus; import org.dspace.app.ldn.model.Notification; +import org.dspace.app.ldn.service.LDNMessageService; import org.dspace.app.ldn.utility.LDNUtils; import org.dspace.content.DSpaceObject; import org.dspace.content.Item; @@ -29,6 +31,7 @@ import org.dspace.core.Constants; import org.dspace.core.Context; import org.dspace.handle.service.HandleService; +import org.dspace.services.ConfigurationService; import org.springframework.beans.factory.annotation.Autowired; /** @@ -42,6 +45,30 @@ public class LDNMetadataProcessor implements LDNProcessor { @Autowired private ItemService itemService; + @Autowired + private LDNMessageService ldnMessageService; + + @Autowired + private ConfigurationService configurationService; + + private static final Set OBJECT_SUBJECT_ITEM_TYPES = Set.of( + "Announce", + "coar-notify:RelationshipAction"); + + private static final Set CONTEXT_ID_ITEM_TYPES = Set.of( + "Announce", + "TentativeReject", + "Accept", + "coar-notify:ReviewAction", + "coar-notify:IngestAction", + "coar-notify:EndorsementAction"); + + private static final Set OBJECT_ID_ITEM_TYPES = Set.of( + "Offer", + "coar-notify:ReviewAction", + "coar-notify:EndorsementAction", + "coar-notify:IngestAction"); + @Autowired private HandleService handleService; @@ -138,16 +165,35 @@ public void setActions(List actions) { */ private Item lookupItem(Context context, Notification notification) throws SQLException, HttpResponseException { Item item = null; - String url = null; - if (notification.getContext() != null) { + + if (CONTEXT_ID_ITEM_TYPES.containsAll(notification.getType())) { url = notification.getContext().getId(); - } else { + } else if (OBJECT_ID_ITEM_TYPES.containsAll(notification.getType())) { url = notification.getObject().getId(); + } else if (OBJECT_SUBJECT_ITEM_TYPES.containsAll(notification.getType())) { + // need to understand if we're sender or receiver + if (ldnMessageService.isTargetCurrent(notification)) { + // this means we're sending the notification + url = notification.getObject().getAsObject(); + // use as:object for sender + } else { + // this means we're receiving the notification + url = notification.getObject().getAsSubject(); + // use as:subject for receiver + } } log.info("Looking up item {}", url); + item = resolveItemByUrl(context, url, notification); + + return item; + } + + private Item resolveItemByUrl(Context context, String url, Notification notification) + throws SQLException, HttpResponseException { + Item item = null; if (LDNUtils.hasUUIDInURL(url)) { UUID uuid = LDNUtils.getUUIDFromURL(url); @@ -155,32 +201,30 @@ private Item lookupItem(Context context, Notification notification) throws SQLEx if (Objects.isNull(item)) { throw new HttpResponseException(HttpStatus.SC_NOT_FOUND, - format("Item with uuid %s not found", uuid)); + format("Item with uuid %s not found", uuid)); } + return item; + } + String handle = handleService.resolveUrlToHandle(context, url); - } else { - String handle = handleService.resolveUrlToHandle(context, url); - - if (Objects.isNull(handle)) { - throw new HttpResponseException(HttpStatus.SC_NOT_FOUND, - format("Handle not found for %s", url)); - } + if (Objects.isNull(handle)) { + throw new HttpResponseException(HttpStatus.SC_NOT_FOUND, + format("Handle not found for %s", url)); + } - DSpaceObject object = handleService.resolveToObject(context, handle); + DSpaceObject object = handleService.resolveToObject(context, handle); - if (Objects.isNull(object)) { - throw new HttpResponseException(HttpStatus.SC_NOT_FOUND, - format("Item with handle %s not found", handle)); - } - - if (object.getType() == Constants.ITEM) { - item = (Item) object; - } else { - throw new HttpResponseException(HttpStatus.SC_UNPROCESSABLE_ENTITY, - format("Handle %s does not resolve to an item", handle)); - } + if (Objects.isNull(object)) { + throw new HttpResponseException(HttpStatus.SC_NOT_FOUND, + format("Item with handle %s not found", handle)); } + if (object.getType() == Constants.ITEM) { + item = (Item) object; + } else { + throw new HttpResponseException(HttpStatus.SC_UNPROCESSABLE_ENTITY, + format("Handle %s does not resolve to an item", handle)); + } return item; } diff --git a/dspace-api/src/main/java/org/dspace/app/ldn/service/LDNMessageService.java b/dspace-api/src/main/java/org/dspace/app/ldn/service/LDNMessageService.java index d200f0ce84ee..eb18c6a69a70 100644 --- a/dspace-api/src/main/java/org/dspace/app/ldn/service/LDNMessageService.java +++ b/dspace-api/src/main/java/org/dspace/app/ldn/service/LDNMessageService.java @@ -98,8 +98,9 @@ public interface LDNMessageService { * * @return number of messages fixed * @param context The DSpace context + * @throws SQLException */ - public int checkQueueMessageTimeout(Context context); + public int checkQueueMessageTimeout(Context context) throws SQLException; /** * Elaborates the oldest enqueued message @@ -154,4 +155,11 @@ public interface LDNMessageService { * @param sourceIp the ip to evaluate */ public boolean isValidIp(NotifyServiceEntity origin, String sourceIp); + + /** + * check if the notification is targeting the current system + * + * @param notification the LDN Message entity + */ + boolean isTargetCurrent(Notification notification); } diff --git a/dspace-api/src/main/java/org/dspace/app/ldn/service/NotifyService.java b/dspace-api/src/main/java/org/dspace/app/ldn/service/NotifyService.java index 6ff4c34780c5..e6ac0d63b438 100644 --- a/dspace-api/src/main/java/org/dspace/app/ldn/service/NotifyService.java +++ b/dspace-api/src/main/java/org/dspace/app/ldn/service/NotifyService.java @@ -43,10 +43,11 @@ public interface NotifyService { * create new notifyServiceEntity * * @param context the context + * @param name name of the service * @return the created NotifyServiceEntity * @throws SQLException if database error */ - public NotifyServiceEntity create(Context context) throws SQLException; + public NotifyServiceEntity create(Context context, String name) throws SQLException; /** * update the provided notifyServiceEntity diff --git a/dspace-api/src/main/java/org/dspace/app/ldn/service/impl/LDNMessageServiceImpl.java b/dspace-api/src/main/java/org/dspace/app/ldn/service/impl/LDNMessageServiceImpl.java index 193d8cebaf52..15f07a556112 100644 --- a/dspace-api/src/main/java/org/dspace/app/ldn/service/impl/LDNMessageServiceImpl.java +++ b/dspace-api/src/main/java/org/dspace/app/ldn/service/impl/LDNMessageServiceImpl.java @@ -11,9 +11,11 @@ import java.net.UnknownHostException; import java.sql.SQLException; import java.util.ArrayList; +import java.util.Collection; import java.util.Collections; import java.util.Date; import java.util.List; +import java.util.Optional; import java.util.Set; import java.util.UUID; @@ -103,7 +105,19 @@ public LDNMessageEntity create(Context context, String id) throws SQLException { @Override public LDNMessageEntity create(Context context, Notification notification, String sourceIp) throws SQLException { LDNMessageEntity ldnMessage = create(context, notification.getId()); - ldnMessage.setObject(findDspaceObjectByUrl(context, notification.getObject().getId())); + DSpaceObject obj = findDspaceObjectByUrl(context, notification.getObject().getId()); + if (obj == null) { + if (isTargetCurrent(notification)) { + // this means we're sending the notification + obj = findDspaceObjectByUrl(context, notification.getObject().getAsObject()); + // use as:object for sender + } else { + // this means we're receiving the notification + obj = findDspaceObjectByUrl(context, notification.getObject().getAsSubject()); + // use as:subject for receiver + } + } + ldnMessage.setObject(obj); if (null != notification.getContext()) { ldnMessage.setContext(findDspaceObjectByUrl(context, notification.getContext().getId())); } @@ -200,17 +214,17 @@ public void update(Context context, LDNMessageEntity ldnMessage) throws SQLExcep private DSpaceObject findDspaceObjectByUrl(Context context, String url) throws SQLException { String dspaceUrl = configurationService.getProperty("dspace.ui.url") + "/handle/"; - if (url.startsWith(dspaceUrl)) { + if (StringUtils.startsWith(url, dspaceUrl)) { return handleService.resolveToObject(context, url.substring(dspaceUrl.length())); } String handleResolver = configurationService.getProperty("handle.canonical.prefix", "https://hdl.handle.net/"); - if (url.startsWith(handleResolver)) { + if (StringUtils.startsWith(url, handleResolver)) { return handleService.resolveToObject(context, url.substring(handleResolver.length())); } dspaceUrl = configurationService.getProperty("dspace.ui.url") + "/items/"; - if (url.startsWith(dspaceUrl)) { + if (StringUtils.startsWith(url, dspaceUrl)) { return itemService.find(context, UUID.fromString(url.substring(dspaceUrl.length()))); } @@ -246,93 +260,77 @@ public List findProcessingTimedoutMessages(Context context) th @Override public int extractAndProcessMessageFromQueue(Context context) throws SQLException { - int result = 0; - int timeoutInMinutes = configurationService.getIntProperty("ldn.processor.queue.msg.timeout"); - if (timeoutInMinutes == 0) { - timeoutInMinutes = 60; - } - List msgs = new ArrayList(); - try { - msgs.addAll(findOldestMessagesToProcess(context)); - msgs.addAll(findMessagesToBeReprocessed(context)); - if (msgs != null && msgs.size() > 0) { - LDNMessageEntity msg = null; - LDNProcessor processor = null; - for (int i = 0; processor == null && i < msgs.size() && msgs.get(i) != null; i++) { - processor = ldnRouter.route(msgs.get(i)); - msg = msgs.get(i); - if (processor == null) { - log.info( - "No processor found for LDN message " + msgs.get(i)); - msg.setQueueStatus(LDNMessageEntity.QUEUE_STATUS_UNMAPPED_ACTION); - msg.setQueueAttempts(msg.getQueueAttempts() + 1); - update(context, msg); - } - } - if (processor != null) { - try { - msg.setQueueLastStartTime(new Date()); - msg.setQueueStatus(LDNMessageEntity.QUEUE_STATUS_PROCESSING); - msg.setQueueTimeout(DateUtils.addMinutes(new Date(), timeoutInMinutes)); - update(context, msg); - ObjectMapper mapper = new ObjectMapper(); - Notification notification = mapper.readValue(msg.getMessage(), Notification.class); - processor.process(context, notification); - msg.setQueueStatus(LDNMessageEntity.QUEUE_STATUS_PROCESSED); - result = 1; - } catch (JsonSyntaxException jse) { - result = -1; - log.error("Unable to read JSON notification from LdnMessage " + msg, jse); - msg.setQueueStatus(LDNMessageEntity.QUEUE_STATUS_FAILED); - } catch (Exception e) { - result = -1; - log.error(e); - msg.setQueueStatus(LDNMessageEntity.QUEUE_STATUS_FAILED); - } finally { - msg.setQueueAttempts(msg.getQueueAttempts() + 1); - update(context, msg); - } + int count = 0; + int timeoutInMinutes = configurationService.getIntProperty("ldn.processor.queue.msg.timeout", 60); + + List messages = findOldestMessagesToProcess(context); + messages.addAll(findMessagesToBeReprocessed(context)); + + Optional msgOpt = getSingleMessageEntity(messages); + + while (msgOpt.isPresent()) { + LDNProcessor processor = null; + LDNMessageEntity msg = msgOpt.get(); + processor = ldnRouter.route(msg); + try { + boolean isServiceDisabled = !isServiceEnabled(msg); + if (processor == null || isServiceDisabled) { + log.warn("No processor found for LDN message " + msg); + Integer status = isServiceDisabled ? LDNMessageEntity.QUEUE_STATUS_UNTRUSTED + : LDNMessageEntity.QUEUE_STATUS_UNMAPPED_ACTION; + msg.setQueueStatus(status); + msg.setQueueAttempts(msg.getQueueAttempts() + 1); + update(context, msg); } else { - log.info("Found x" + msgs.size() + " LDN messages but none processor found."); + msg.setQueueLastStartTime(new Date()); + msg.setQueueStatus(LDNMessageEntity.QUEUE_STATUS_PROCESSING); + msg.setQueueTimeout(DateUtils.addMinutes(new Date(), timeoutInMinutes)); + update(context, msg); + ObjectMapper mapper = new ObjectMapper(); + Notification notification = mapper.readValue(msg.getMessage(), Notification.class); + processor.process(context, notification); + msg.setQueueStatus(LDNMessageEntity.QUEUE_STATUS_PROCESSED); + count++; } + } catch (JsonSyntaxException jse) { + log.error("Unable to read JSON notification from LdnMessage " + msg, jse); + msg.setQueueStatus(LDNMessageEntity.QUEUE_STATUS_FAILED); + } catch (Exception e) { + log.error(e); + msg.setQueueStatus(LDNMessageEntity.QUEUE_STATUS_FAILED); + } finally { + msg.setQueueAttempts(msg.getQueueAttempts() + 1); + update(context, msg); } - } catch (SQLException e) { - result = -1; - log.error(e); + + messages = findOldestMessagesToProcess(context); + messages.addAll(findMessagesToBeReprocessed(context)); + msgOpt = getSingleMessageEntity(messages); } - return result; + return count; } - @Override - public int checkQueueMessageTimeout(Context context) { - int result = 0; - int timeoutInMinutes = configurationService.getIntProperty("ldn.processor.queue.msg.timeout"); - if (timeoutInMinutes == 0) { - timeoutInMinutes = 60; - } - int maxAttempts = configurationService.getIntProperty("ldn.processor.max.attempts"); - if (maxAttempts == 0) { - maxAttempts = 5; + private boolean isServiceEnabled(LDNMessageEntity msg) { + String localInboxUrl = configurationService.getProperty("ldn.notify.inbox"); + if (msg.getTarget() == null || StringUtils.equals(msg.getTarget().getLdnUrl(), localInboxUrl)) { + return msg.getOrigin().isEnabled(); } - log.debug("Using parameters: [timeoutInMinutes]=" + timeoutInMinutes + ",[maxAttempts]=" + maxAttempts); + return msg.getTarget().isEnabled(); + } + + @Override + public int checkQueueMessageTimeout(Context context) throws SQLException { + int count = 0; + int maxAttempts = configurationService.getIntProperty("ldn.processor.max.attempts", 5); /* * put failed on processing messages with timed-out timeout and * attempts >= configured_max_attempts put queue on processing messages with * timed-out timeout and attempts < configured_max_attempts */ - List msgsToCheck = null; - try { - msgsToCheck = findProcessingTimedoutMessages(context); - } catch (SQLException e) { - result = -1; - log.error("An error occured on searching for timedout LDN messages!", e); - return result; - } - if (msgsToCheck == null || msgsToCheck.isEmpty()) { - return result; - } - for (int i = 0; i < msgsToCheck.size() && msgsToCheck.get(i) != null; i++) { - LDNMessageEntity msg = msgsToCheck.get(i); + Optional msgOpt = getSingleMessageEntity(findProcessingTimedoutMessages(context)); + + while (msgOpt.isPresent()) { + LDNMessageEntity msg = msgOpt.get(); try { if (msg.getQueueAttempts() >= maxAttempts) { msg.setQueueStatus(LDNMessageEntity.QUEUE_STATUS_FAILED); @@ -340,13 +338,17 @@ public int checkQueueMessageTimeout(Context context) { msg.setQueueStatus(LDNMessageEntity.QUEUE_STATUS_QUEUED); } update(context, msg); - result++; + count++; } catch (SQLException e) { - log.error("Can't update LDN message " + msg); - log.error(e); + log.error("Can't update LDN message " + msg, e); } + msgOpt = getSingleMessageEntity(findProcessingTimedoutMessages(context)); } - return result; + return count; + } + + public Optional getSingleMessageEntity(Collection messages) { + return messages.stream().findFirst(); } @Override @@ -358,8 +360,12 @@ public NotifyRequestStatus findRequestsByItem(Context context, Item item) throws if (msgs != null && !msgs.isEmpty()) { for (LDNMessageEntity msg : msgs) { RequestStatus offer = new RequestStatus(); - offer.setServiceName(msg.getOrigin() == null ? "Unknown Service" : msg.getOrigin().getName()); - offer.setServiceUrl(msg.getOrigin() == null ? "" : msg.getOrigin().getUrl()); + NotifyServiceEntity nse = msg.getOrigin(); + if (nse == null) { + nse = msg.getTarget(); + } + offer.setServiceName(nse == null ? "Unknown Service" : nse.getName()); + offer.setServiceUrl(nse == null ? "" : nse.getUrl()); offer.setOfferType(LDNUtils.getNotifyType(msg.getCoarNotifyType())); List acks = ldnMessageDao.findAllRelatedMessagesByItem( context, msg, item, "Accept", "TentativeReject", "TentativeAccept", "Announce"); @@ -389,4 +395,10 @@ public void delete(Context context, LDNMessageEntity ldnMessage) throws SQLExcep ldnMessageDao.delete(context, ldnMessage); } + @Override + public boolean isTargetCurrent(Notification notification) { + String localInboxUrl = configurationService.getProperty("ldn.notify.inbox"); + return StringUtils.equals(notification.getTarget().getInbox(), localInboxUrl); + } + } diff --git a/dspace-api/src/main/java/org/dspace/app/ldn/service/impl/NotifyServiceImpl.java b/dspace-api/src/main/java/org/dspace/app/ldn/service/impl/NotifyServiceImpl.java index d2289fd77a1c..87be008371aa 100644 --- a/dspace-api/src/main/java/org/dspace/app/ldn/service/impl/NotifyServiceImpl.java +++ b/dspace-api/src/main/java/org/dspace/app/ldn/service/impl/NotifyServiceImpl.java @@ -37,8 +37,9 @@ public NotifyServiceEntity find(Context context, Integer id) throws SQLException } @Override - public NotifyServiceEntity create(Context context) throws SQLException { + public NotifyServiceEntity create(Context context, String name) throws SQLException { NotifyServiceEntity notifyServiceEntity = new NotifyServiceEntity(); + notifyServiceEntity.setName(name); return notifyServiceDao.create(context, notifyServiceEntity); } diff --git a/dspace-api/src/main/java/org/dspace/app/requestitem/RequestItem.java b/dspace-api/src/main/java/org/dspace/app/requestitem/RequestItem.java index cdefd1298c6e..bf2bfb4d60b2 100644 --- a/dspace-api/src/main/java/org/dspace/app/requestitem/RequestItem.java +++ b/dspace-api/src/main/java/org/dspace/app/requestitem/RequestItem.java @@ -8,19 +8,19 @@ package org.dspace.app.requestitem; import java.util.Date; -import javax.persistence.Column; -import javax.persistence.Entity; -import javax.persistence.FetchType; -import javax.persistence.GeneratedValue; -import javax.persistence.GenerationType; -import javax.persistence.Id; -import javax.persistence.JoinColumn; -import javax.persistence.ManyToOne; -import javax.persistence.SequenceGenerator; -import javax.persistence.Table; -import javax.persistence.Temporal; -import javax.persistence.TemporalType; +import jakarta.persistence.Column; +import jakarta.persistence.Entity; +import jakarta.persistence.FetchType; +import jakarta.persistence.GeneratedValue; +import jakarta.persistence.GenerationType; +import jakarta.persistence.Id; +import jakarta.persistence.JoinColumn; +import jakarta.persistence.ManyToOne; +import jakarta.persistence.SequenceGenerator; +import jakarta.persistence.Table; +import jakarta.persistence.Temporal; +import jakarta.persistence.TemporalType; import org.dspace.content.Bitstream; import org.dspace.content.Item; import org.dspace.core.Context; diff --git a/dspace-api/src/main/java/org/dspace/app/requestitem/RequestItemEmailNotifier.java b/dspace-api/src/main/java/org/dspace/app/requestitem/RequestItemEmailNotifier.java index 6499c45a7830..c489fb4b3ff0 100644 --- a/dspace-api/src/main/java/org/dspace/app/requestitem/RequestItemEmailNotifier.java +++ b/dspace-api/src/main/java/org/dspace/app/requestitem/RequestItemEmailNotifier.java @@ -11,11 +11,11 @@ import java.io.IOException; import java.sql.SQLException; import java.util.List; -import javax.annotation.ManagedBean; -import javax.inject.Inject; -import javax.inject.Singleton; -import javax.mail.MessagingException; +import jakarta.annotation.ManagedBean; +import jakarta.inject.Inject; +import jakarta.inject.Singleton; +import jakarta.mail.MessagingException; import org.apache.logging.log4j.LogManager; import org.apache.logging.log4j.Logger; import org.dspace.app.requestitem.service.RequestItemService; diff --git a/dspace-api/src/main/java/org/dspace/app/requestitem/dao/impl/RequestItemDAOImpl.java b/dspace-api/src/main/java/org/dspace/app/requestitem/dao/impl/RequestItemDAOImpl.java index 008174ded88c..c76bd50d1910 100644 --- a/dspace-api/src/main/java/org/dspace/app/requestitem/dao/impl/RequestItemDAOImpl.java +++ b/dspace-api/src/main/java/org/dspace/app/requestitem/dao/impl/RequestItemDAOImpl.java @@ -9,11 +9,11 @@ import java.sql.SQLException; import java.util.Iterator; -import javax.persistence.Query; -import javax.persistence.criteria.CriteriaBuilder; -import javax.persistence.criteria.CriteriaQuery; -import javax.persistence.criteria.Root; +import jakarta.persistence.Query; +import jakarta.persistence.criteria.CriteriaBuilder; +import jakarta.persistence.criteria.CriteriaQuery; +import jakarta.persistence.criteria.Root; import org.dspace.app.requestitem.RequestItem; import org.dspace.app.requestitem.RequestItem_; import org.dspace.app.requestitem.dao.RequestItemDAO; @@ -44,8 +44,12 @@ public RequestItem findByToken(Context context, String token) throws SQLExceptio } @Override public Iterator findByItem(Context context, Item item) throws SQLException { - Query query = createQuery(context, "FROM RequestItem WHERE item_id= :uuid"); - query.setParameter("uuid", item.getID()); + CriteriaBuilder criteriaBuilder = getCriteriaBuilder(context); + CriteriaQuery criteriaQuery = getCriteriaQuery(criteriaBuilder, RequestItem.class); + Root requestItemRoot = criteriaQuery.from(RequestItem.class); + criteriaQuery.select(requestItemRoot); + criteriaQuery.where(criteriaBuilder.equal(requestItemRoot.get(RequestItem_.item), item)); + Query query = createQuery(context, criteriaQuery); return iterate(query); } } diff --git a/dspace-api/src/main/java/org/dspace/app/sherpa/SHERPAService.java b/dspace-api/src/main/java/org/dspace/app/sherpa/SHERPAService.java index ac4b27c520b8..182609bbf3df 100644 --- a/dspace-api/src/main/java/org/dspace/app/sherpa/SHERPAService.java +++ b/dspace-api/src/main/java/org/dspace/app/sherpa/SHERPAService.java @@ -12,8 +12,8 @@ import java.net.URI; import java.net.URISyntaxException; import java.nio.charset.StandardCharsets; -import javax.annotation.PostConstruct; +import jakarta.annotation.PostConstruct; import org.apache.commons.io.IOUtils; import org.apache.commons.lang3.StringUtils; import org.apache.http.HttpEntity; @@ -94,7 +94,7 @@ private void init() { * @param query ISSN string to pass in an "issn equals" API query * @return SHERPAResponse containing an error or journal policies */ - @Cacheable(key = "#query", cacheNames = "sherpa.searchByJournalISSN") + @Cacheable(key = "#query", condition = "#query != null", cacheNames = "sherpa.searchByJournalISSN") public SHERPAResponse searchByJournalISSN(String query) { return performRequest("publication", "issn", "equals", query, 0, 1); } diff --git a/dspace-api/src/main/java/org/dspace/app/solrdatabaseresync/SolrDatabaseResyncCli.java b/dspace-api/src/main/java/org/dspace/app/solrdatabaseresync/SolrDatabaseResyncCli.java index f901c9ca569e..aac42ce1acf9 100644 --- a/dspace-api/src/main/java/org/dspace/app/solrdatabaseresync/SolrDatabaseResyncCli.java +++ b/dspace-api/src/main/java/org/dspace/app/solrdatabaseresync/SolrDatabaseResyncCli.java @@ -105,35 +105,17 @@ private void performStatusUpdate(Context context) throws SearchServiceException, solrQuery.addFilterQuery(dateRangeFilter); solrQuery.addField(SearchUtils.RESOURCE_ID_FIELD); solrQuery.addField(SearchUtils.RESOURCE_UNIQUE_ID); + solrQuery.setRows(0); QueryResponse response = solrSearchCore.getSolr().query(solrQuery, solrSearchCore.REQUEST_METHOD); - - if (response != null) { - logInfoAndOut(response.getResults().size() + " items found to process"); - - for (SolrDocument doc : response.getResults()) { - String uuid = (String) doc.getFirstValue(SearchUtils.RESOURCE_ID_FIELD); - String uniqueId = (String) doc.getFirstValue(SearchUtils.RESOURCE_UNIQUE_ID); - logDebugAndOut("Processing item with UUID: " + uuid); - - Optional indexableObject = Optional.empty(); - try { - indexableObject = indexObjectServiceFactory - .getIndexableObjectFactory(uniqueId).findIndexableObject(context, uuid); - } catch (SQLException e) { - log.warn("An exception occurred when attempting to retrieve item with UUID \"" + uuid + - "\" from the database, removing related solr document", e); - } - - try { - if (indexableObject.isPresent()) { - logDebugAndOut("Item exists in DB, updating solr document"); - updateItem(context, indexableObject.get()); - } else { - logDebugAndOut("Item doesn't exist in DB, removing solr document"); - removeItem(context, uniqueId); - } - } catch (SQLException | IOException e) { - log.error(e.getMessage(), e); + if (response != null && response.getResults() != null) { + long nrOfPreDBResults = response.getResults().getNumFound(); + if (nrOfPreDBResults > 0) { + logInfoAndOut(nrOfPreDBResults + " items found to process"); + int batchSize = configurationService.getIntProperty("script.solr-database-resync.batch-size", 100); + for (int start = 0; start < nrOfPreDBResults; start += batchSize) { + solrQuery.setStart(start); + solrQuery.setRows(batchSize); + performStatusUpdateOnNextBatch(context, solrQuery); } } } @@ -141,6 +123,38 @@ private void performStatusUpdate(Context context) throws SearchServiceException, indexingService.commit(); } + private void performStatusUpdateOnNextBatch(Context context, SolrQuery solrQuery) + throws SolrServerException, IOException { + QueryResponse response = solrSearchCore.getSolr().query(solrQuery, solrSearchCore.REQUEST_METHOD); + + for (SolrDocument doc : response.getResults()) { + String uuid = (String) doc.getFirstValue(SearchUtils.RESOURCE_ID_FIELD); + String uniqueId = (String) doc.getFirstValue(SearchUtils.RESOURCE_UNIQUE_ID); + logDebugAndOut("Processing item with UUID: " + uuid); + + Optional indexableObject = Optional.empty(); + try { + indexableObject = indexObjectServiceFactory + .getIndexableObjectFactory(uniqueId).findIndexableObject(context, uuid); + } catch (SQLException e) { + log.warn("An exception occurred when attempting to retrieve item with UUID \"" + uuid + + "\" from the database, removing related solr document", e); + } + + try { + if (indexableObject.isPresent()) { + logDebugAndOut("Item exists in DB, updating solr document"); + updateItem(context, indexableObject.get()); + } else { + logDebugAndOut("Item doesn't exist in DB, removing solr document"); + removeItem(context, uniqueId); + } + } catch (SQLException | IOException e) { + log.error(e.getMessage(), e); + } + } + } + private void updateItem(Context context, IndexableObject indexableObject) throws SolrServerException, IOException { Map fieldModifier = new HashMap<>(1); fieldModifier.put("remove", STATUS_FIELD_PREDB); diff --git a/dspace-api/src/main/java/org/dspace/app/suggestion/SuggestionServiceImpl.java b/dspace-api/src/main/java/org/dspace/app/suggestion/SuggestionServiceImpl.java index 66773fbc128d..57fe42806b12 100644 --- a/dspace-api/src/main/java/org/dspace/app/suggestion/SuggestionServiceImpl.java +++ b/dspace-api/src/main/java/org/dspace/app/suggestion/SuggestionServiceImpl.java @@ -13,8 +13,8 @@ import java.util.Map; import java.util.UUID; import java.util.stream.Collectors; -import javax.annotation.Resource; +import jakarta.annotation.Resource; import org.apache.logging.log4j.Logger; import org.dspace.core.Context; import org.springframework.stereotype.Service; diff --git a/dspace-api/src/main/java/org/dspace/app/util/AuthorizeUtil.java b/dspace-api/src/main/java/org/dspace/app/util/AuthorizeUtil.java index b498b693956a..6400820546ce 100644 --- a/dspace-api/src/main/java/org/dspace/app/util/AuthorizeUtil.java +++ b/dspace-api/src/main/java/org/dspace/app/util/AuthorizeUtil.java @@ -9,8 +9,8 @@ import java.sql.SQLException; import java.util.List; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.apache.logging.log4j.Logger; import org.dspace.authenticate.factory.AuthenticateServiceFactory; import org.dspace.authorize.AuthorizeConfiguration; diff --git a/dspace-api/src/main/java/org/dspace/app/util/DCInput.java b/dspace-api/src/main/java/org/dspace/app/util/DCInput.java index 57a9bbb75222..70296ad73a2f 100644 --- a/dspace-api/src/main/java/org/dspace/app/util/DCInput.java +++ b/dspace-api/src/main/java/org/dspace/app/util/DCInput.java @@ -15,8 +15,8 @@ import java.util.Optional; import java.util.regex.Pattern; import java.util.regex.PatternSyntaxException; -import javax.annotation.Nullable; +import jakarta.annotation.Nullable; import org.apache.commons.lang3.StringUtils; import org.apache.logging.log4j.LogManager; import org.apache.logging.log4j.Logger; diff --git a/dspace-api/src/main/java/org/dspace/app/util/DSpaceContextListener.java b/dspace-api/src/main/java/org/dspace/app/util/DSpaceContextListener.java index b0289ec4a4e1..51d78ccaba5c 100644 --- a/dspace-api/src/main/java/org/dspace/app/util/DSpaceContextListener.java +++ b/dspace-api/src/main/java/org/dspace/app/util/DSpaceContextListener.java @@ -13,9 +13,9 @@ import java.sql.Driver; import java.sql.DriverManager; import java.util.Enumeration; -import javax.servlet.ServletContextEvent; -import javax.servlet.ServletContextListener; +import jakarta.servlet.ServletContextEvent; +import jakarta.servlet.ServletContextListener; import org.apache.logging.log4j.Logger; /** diff --git a/dspace-api/src/main/java/org/dspace/app/util/DSpaceWebappListener.java b/dspace-api/src/main/java/org/dspace/app/util/DSpaceWebappListener.java index c2817169b21e..32c4ff9c1c71 100644 --- a/dspace-api/src/main/java/org/dspace/app/util/DSpaceWebappListener.java +++ b/dspace-api/src/main/java/org/dspace/app/util/DSpaceWebappListener.java @@ -8,8 +8,9 @@ package org.dspace.app.util; import java.lang.reflect.InvocationTargetException; -import javax.servlet.ServletContextEvent; -import javax.servlet.ServletContextListener; + +import jakarta.servlet.ServletContextEvent; +import jakarta.servlet.ServletContextListener; /** * Class that registers the web application upon startup of the application. diff --git a/dspace-api/src/main/java/org/dspace/app/util/OpenSearchServiceImpl.java b/dspace-api/src/main/java/org/dspace/app/util/OpenSearchServiceImpl.java index 514143c93ea0..bff741b5ca42 100644 --- a/dspace-api/src/main/java/org/dspace/app/util/OpenSearchServiceImpl.java +++ b/dspace-api/src/main/java/org/dspace/app/util/OpenSearchServiceImpl.java @@ -155,7 +155,7 @@ protected SyndicationFeed getResults(Context context, String format, String quer format = "atom_1.0"; } - SyndicationFeed feed = new SyndicationFeed(labels.get(SyndicationFeed.MSG_UITYPE)); + SyndicationFeed feed = new SyndicationFeed(); feed.populate(null, context, scope, results, labels); feed.setType(format); feed.addModule(openSearchMarkup(query, totalResults, start, pageSize)); diff --git a/dspace-api/src/main/java/org/dspace/app/util/SubmissionConfigReader.java b/dspace-api/src/main/java/org/dspace/app/util/SubmissionConfigReader.java index 7544718a2d53..da54145f1b9e 100644 --- a/dspace-api/src/main/java/org/dspace/app/util/SubmissionConfigReader.java +++ b/dspace-api/src/main/java/org/dspace/app/util/SubmissionConfigReader.java @@ -30,7 +30,6 @@ import org.dspace.content.factory.ContentServiceFactory; import org.dspace.content.service.CollectionService; import org.dspace.core.Context; -import org.dspace.discovery.SearchServiceException; import org.dspace.handle.factory.HandleServiceFactory; import org.dspace.services.RequestService; import org.dspace.services.factory.DSpaceServicesFactory; @@ -109,6 +108,13 @@ public class SubmissionConfigReader { */ private Map communityToSubmissionConfig = null; + /** + * Hashmap which stores which submission process configuration is used by + * which entityType, computed from the item submission config file + * (specifically, the 'submission-map' tag) + */ + private Map entityTypeToSubmissionConfig = null; + /** * Reference to the global submission step definitions defined in the * "step-definitions" section @@ -157,6 +163,7 @@ public SubmissionConfigReader() throws SubmissionConfigReaderException { public void reload() throws SubmissionConfigReaderException { collectionToSubmissionConfig = null; communityToSubmissionConfig = null; + entityTypeToSubmissionConfig = null; stepDefns = null; submitDefns = null; buildInputs(configDir + SUBMIT_DEF_FILE_PREFIX + SUBMIT_DEF_FILE_SUFFIX); @@ -176,6 +183,7 @@ public void reload() throws SubmissionConfigReaderException { private void buildInputs(String fileName) throws SubmissionConfigReaderException { collectionToSubmissionConfig = new HashMap(); communityToSubmissionConfig = new HashMap(); + entityTypeToSubmissionConfig = new HashMap(); submitDefns = new LinkedHashMap>>(); String uri = "file:" + new File(fileName).getAbsolutePath(); @@ -193,9 +201,6 @@ private void buildInputs(String fileName) throws SubmissionConfigReaderException } catch (FactoryConfigurationError fe) { throw new SubmissionConfigReaderException( "Cannot create Item Submission Configuration parser", fe); - } catch (SearchServiceException se) { - throw new SubmissionConfigReaderException( - "Cannot perform a discovery search for Item Submission Configuration", se); } catch (Exception e) { throw new SubmissionConfigReaderException( "Error creating Item Submission Configuration: " + e); @@ -460,7 +465,7 @@ public SubmissionStepConfig getStepConfig(String stepID) * should correspond to the collection-form maps, the form definitions, and * the display/storage word pairs. */ - private void doNodes(Node n) throws SAXException, SearchServiceException, SubmissionConfigReaderException { + private void doNodes(Node n) throws SAXException, SubmissionConfigReaderException { if (n == null) { return; } @@ -510,9 +515,7 @@ private void doNodes(Node n) throws SAXException, SearchServiceException, Submis * the collection handle and item submission name, put name in hashmap keyed * by the collection handle. */ - private void processMap(Node e) throws SAXException, SearchServiceException { - // create a context - Context context = new Context(); + private void processMap(Node e) throws SAXException { NodeList nl = e.getChildNodes(); int len = nl.getLength(); @@ -533,7 +536,7 @@ private void processMap(Node e) throws SAXException, SearchServiceException { throw new SAXException( "name-map element is missing submission-name attribute in 'item-submission.xml'"); } - if (content != null && content.length() > 0) { + if (content != null && !content.isEmpty()) { throw new SAXException( "name-map element has content in 'item-submission.xml', it should be empty."); } diff --git a/dspace-api/src/main/java/org/dspace/app/util/SubmissionStepConfig.java b/dspace-api/src/main/java/org/dspace/app/util/SubmissionStepConfig.java index 03d5dc6b7657..40d3ebae602a 100644 --- a/dspace-api/src/main/java/org/dspace/app/util/SubmissionStepConfig.java +++ b/dspace-api/src/main/java/org/dspace/app/util/SubmissionStepConfig.java @@ -13,7 +13,7 @@ import org.apache.commons.lang3.BooleanUtils; import org.dspace.content.InProgressSubmission; import org.dspace.content.WorkspaceItem; -import org.hibernate.proxy.HibernateProxyHelper; +import org.dspace.core.HibernateProxyHelper; /** * Class representing configuration for a single step within an Item Submission diff --git a/dspace-api/src/main/java/org/dspace/app/util/SyndicationFeed.java b/dspace-api/src/main/java/org/dspace/app/util/SyndicationFeed.java index c1402499c444..654036963572 100644 --- a/dspace-api/src/main/java/org/dspace/app/util/SyndicationFeed.java +++ b/dspace-api/src/main/java/org/dspace/app/util/SyndicationFeed.java @@ -13,7 +13,6 @@ import java.util.Date; import java.util.List; import java.util.Map; -import javax.servlet.http.HttpServletRequest; import com.rometools.modules.itunes.EntryInformation; import com.rometools.modules.itunes.EntryInformationImpl; @@ -35,6 +34,7 @@ import com.rometools.rome.feed.synd.SyndPersonImpl; import com.rometools.rome.io.FeedException; import com.rometools.rome.io.SyndFeedOutput; +import jakarta.servlet.http.HttpServletRequest; import org.apache.commons.lang3.ArrayUtils; import org.apache.commons.lang3.StringUtils; import org.apache.logging.log4j.Logger; @@ -84,11 +84,6 @@ public class SyndicationFeed { public static final String MSG_FEED_TITLE = "feed.title"; public static final String MSG_FEED_DESCRIPTION = "general-feed.description"; public static final String MSG_METADATA = "metadata."; - public static final String MSG_UITYPE = "ui.type"; - - // UI keywords - public static final String UITYPE_XMLUI = "xmlui"; - public static final String UITYPE_JSPUI = "jspui"; // default DC fields for entry protected String defaultTitleField = "dc.title"; @@ -145,10 +140,6 @@ public class SyndicationFeed { // the feed object we are building protected SyndFeed feed = null; - // memory of UI that called us, "xmlui" or "jspui" - // affects Bitstream retrieval URL and I18N keys - protected String uiType = null; - protected HttpServletRequest request = null; protected CollectionService collectionService; @@ -157,12 +148,9 @@ public class SyndicationFeed { /** * Constructor. - * - * @param ui either "xmlui" or "jspui" */ - public SyndicationFeed(String ui) { + public SyndicationFeed() { feed = new SyndFeedImpl(); - uiType = ui; ContentServiceFactory contentServiceFactory = ContentServiceFactory.getInstance(); itemService = contentServiceFactory.getItemService(); collectionService = contentServiceFactory.getCollectionService(); @@ -518,8 +506,7 @@ protected static String getDefaultedConfiguration(String key, String dfl) { protected String urlOfBitstream(HttpServletRequest request, Bitstream logo) { String name = logo.getName(); return resolveURL(request, null) + - (uiType.equalsIgnoreCase(UITYPE_XMLUI) ? "/bitstream/id/" : "/retrieve/") + - logo.getID() + "/" + (name == null ? "" : name); + "/bitstreams/" + logo.getID() + "/download"; } protected String baseURL = null; // cache the result for null diff --git a/dspace-api/src/main/java/org/dspace/app/util/Util.java b/dspace-api/src/main/java/org/dspace/app/util/Util.java index 11b6e3528669..cf88e08455e0 100644 --- a/dspace-api/src/main/java/org/dspace/app/util/Util.java +++ b/dspace-api/src/main/java/org/dspace/app/util/Util.java @@ -20,8 +20,8 @@ import java.util.Properties; import java.util.Set; import java.util.UUID; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.apache.commons.collections4.ListUtils; import org.apache.commons.lang3.StringUtils; import org.apache.logging.log4j.Logger; diff --git a/dspace-api/src/main/java/org/dspace/app/util/WebApp.java b/dspace-api/src/main/java/org/dspace/app/util/WebApp.java index 2f42c1459f63..c2fc133f41c6 100644 --- a/dspace-api/src/main/java/org/dspace/app/util/WebApp.java +++ b/dspace-api/src/main/java/org/dspace/app/util/WebApp.java @@ -8,16 +8,16 @@ package org.dspace.app.util; import java.util.Date; -import javax.persistence.Column; -import javax.persistence.Entity; -import javax.persistence.GeneratedValue; -import javax.persistence.GenerationType; -import javax.persistence.Id; -import javax.persistence.SequenceGenerator; -import javax.persistence.Table; -import javax.persistence.Temporal; -import javax.persistence.TemporalType; +import jakarta.persistence.Column; +import jakarta.persistence.Entity; +import jakarta.persistence.GeneratedValue; +import jakarta.persistence.GenerationType; +import jakarta.persistence.Id; +import jakarta.persistence.SequenceGenerator; +import jakarta.persistence.Table; +import jakarta.persistence.Temporal; +import jakarta.persistence.TemporalType; import org.dspace.core.Context; import org.dspace.core.ReloadableEntity; diff --git a/dspace-api/src/main/java/org/dspace/authenticate/AuthenticationMethod.java b/dspace-api/src/main/java/org/dspace/authenticate/AuthenticationMethod.java index 500ee04a979b..d316cb636f87 100644 --- a/dspace-api/src/main/java/org/dspace/authenticate/AuthenticationMethod.java +++ b/dspace-api/src/main/java/org/dspace/authenticate/AuthenticationMethod.java @@ -9,9 +9,9 @@ import java.sql.SQLException; import java.util.List; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; +import jakarta.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletResponse; import org.dspace.core.Context; import org.dspace.eperson.EPerson; import org.dspace.eperson.Group; diff --git a/dspace-api/src/main/java/org/dspace/authenticate/AuthenticationServiceImpl.java b/dspace-api/src/main/java/org/dspace/authenticate/AuthenticationServiceImpl.java index a1e096dc4d64..2b07f73c489c 100644 --- a/dspace-api/src/main/java/org/dspace/authenticate/AuthenticationServiceImpl.java +++ b/dspace-api/src/main/java/org/dspace/authenticate/AuthenticationServiceImpl.java @@ -13,8 +13,8 @@ import java.util.Date; import java.util.Iterator; import java.util.List; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.apache.logging.log4j.LogManager; import org.apache.logging.log4j.Logger; import org.dspace.authenticate.service.AuthenticationService; diff --git a/dspace-api/src/main/java/org/dspace/authenticate/IPAuthentication.java b/dspace-api/src/main/java/org/dspace/authenticate/IPAuthentication.java index 0c2be211a532..db71ec1c2ff1 100644 --- a/dspace-api/src/main/java/org/dspace/authenticate/IPAuthentication.java +++ b/dspace-api/src/main/java/org/dspace/authenticate/IPAuthentication.java @@ -14,9 +14,9 @@ import java.util.List; import java.util.Map; import java.util.UUID; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; +import jakarta.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletResponse; import org.apache.logging.log4j.Logger; import org.dspace.core.Context; import org.dspace.core.LogHelper; diff --git a/dspace-api/src/main/java/org/dspace/authenticate/LDAPAuthentication.java b/dspace-api/src/main/java/org/dspace/authenticate/LDAPAuthentication.java index 585eaf9cd8b1..b791df15b5c0 100644 --- a/dspace-api/src/main/java/org/dspace/authenticate/LDAPAuthentication.java +++ b/dspace-api/src/main/java/org/dspace/authenticate/LDAPAuthentication.java @@ -29,9 +29,9 @@ import javax.naming.ldap.LdapContext; import javax.naming.ldap.StartTlsRequest; import javax.naming.ldap.StartTlsResponse; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; +import jakarta.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletResponse; import org.apache.commons.lang3.StringUtils; import org.apache.logging.log4j.Logger; import org.dspace.authenticate.factory.AuthenticateServiceFactory; diff --git a/dspace-api/src/main/java/org/dspace/authenticate/OidcAuthentication.java b/dspace-api/src/main/java/org/dspace/authenticate/OidcAuthentication.java index 5d4635d48ef5..c7ac1ff55748 100644 --- a/dspace-api/src/main/java/org/dspace/authenticate/OidcAuthentication.java +++ b/dspace-api/src/main/java/org/dspace/authenticate/OidcAuthentication.java @@ -9,9 +9,9 @@ import java.sql.SQLException; import java.util.List; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; +import jakarta.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletResponse; import org.dspace.core.Context; import org.dspace.eperson.EPerson; import org.dspace.eperson.Group; diff --git a/dspace-api/src/main/java/org/dspace/authenticate/OidcAuthenticationBean.java b/dspace-api/src/main/java/org/dspace/authenticate/OidcAuthenticationBean.java index 572622aa8fda..cc1cc2654b62 100644 --- a/dspace-api/src/main/java/org/dspace/authenticate/OidcAuthenticationBean.java +++ b/dspace-api/src/main/java/org/dspace/authenticate/OidcAuthenticationBean.java @@ -21,9 +21,9 @@ import java.util.List; import java.util.Map; import java.util.Map.Entry; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; +import jakarta.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletResponse; import org.apache.commons.lang3.StringUtils; import org.apache.logging.log4j.LogManager; import org.apache.logging.log4j.Logger; diff --git a/dspace-api/src/main/java/org/dspace/authenticate/OrcidAuthentication.java b/dspace-api/src/main/java/org/dspace/authenticate/OrcidAuthentication.java index 3e9ff6638a61..932d963307f6 100644 --- a/dspace-api/src/main/java/org/dspace/authenticate/OrcidAuthentication.java +++ b/dspace-api/src/main/java/org/dspace/authenticate/OrcidAuthentication.java @@ -10,9 +10,9 @@ import java.sql.SQLException; import java.util.Iterator; import java.util.List; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; +import jakarta.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletResponse; import org.dspace.authenticate.factory.AuthenticateServiceFactory; import org.dspace.core.Context; import org.dspace.eperson.EPerson; diff --git a/dspace-api/src/main/java/org/dspace/authenticate/OrcidAuthenticationBean.java b/dspace-api/src/main/java/org/dspace/authenticate/OrcidAuthenticationBean.java index 6426aa67654a..cf166a34e671 100644 --- a/dspace-api/src/main/java/org/dspace/authenticate/OrcidAuthenticationBean.java +++ b/dspace-api/src/main/java/org/dspace/authenticate/OrcidAuthenticationBean.java @@ -18,9 +18,9 @@ import java.util.Collections; import java.util.List; import java.util.Optional; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; +import jakarta.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletResponse; import org.apache.commons.collections4.CollectionUtils; import org.apache.commons.lang3.StringUtils; import org.apache.logging.log4j.LogManager; diff --git a/dspace-api/src/main/java/org/dspace/authenticate/PasswordAuthentication.java b/dspace-api/src/main/java/org/dspace/authenticate/PasswordAuthentication.java index 0bf0f9bcbc95..414cb68a5e4c 100644 --- a/dspace-api/src/main/java/org/dspace/authenticate/PasswordAuthentication.java +++ b/dspace-api/src/main/java/org/dspace/authenticate/PasswordAuthentication.java @@ -12,9 +12,9 @@ import java.util.Collections; import java.util.List; import java.util.Optional; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; +import jakarta.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletResponse; import org.apache.commons.lang3.StringUtils; import org.apache.logging.log4j.LogManager; import org.apache.logging.log4j.Logger; diff --git a/dspace-api/src/main/java/org/dspace/authenticate/ShibAuthentication.java b/dspace-api/src/main/java/org/dspace/authenticate/ShibAuthentication.java index 791634a7dc25..24d8266012d4 100644 --- a/dspace-api/src/main/java/org/dspace/authenticate/ShibAuthentication.java +++ b/dspace-api/src/main/java/org/dspace/authenticate/ShibAuthentication.java @@ -20,9 +20,9 @@ import java.util.List; import java.util.Map; import java.util.Set; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; +import jakarta.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletResponse; import org.apache.commons.lang3.StringUtils; import org.apache.logging.log4j.LogManager; import org.apache.logging.log4j.Logger; diff --git a/dspace-api/src/main/java/org/dspace/authenticate/X509Authentication.java b/dspace-api/src/main/java/org/dspace/authenticate/X509Authentication.java index 12dc5feda583..55843c710760 100644 --- a/dspace-api/src/main/java/org/dspace/authenticate/X509Authentication.java +++ b/dspace-api/src/main/java/org/dspace/authenticate/X509Authentication.java @@ -25,10 +25,10 @@ import java.util.Enumeration; import java.util.List; import java.util.StringTokenizer; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; -import javax.servlet.http.HttpSession; +import jakarta.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletResponse; +import jakarta.servlet.http.HttpSession; import org.apache.commons.lang3.ArrayUtils; import org.apache.logging.log4j.Logger; import org.dspace.authenticate.factory.AuthenticateServiceFactory; @@ -505,7 +505,7 @@ public int authenticate(Context context, String username, String password, X509Certificate[] certs = null; if (request != null) { certs = (X509Certificate[]) request - .getAttribute("javax.servlet.request.X509Certificate"); + .getAttribute("jakarta.servlet.request.X509Certificate"); } if ((certs == null) || (certs.length == 0)) { diff --git a/dspace-api/src/main/java/org/dspace/authenticate/oidc/impl/OidcClientImpl.java b/dspace-api/src/main/java/org/dspace/authenticate/oidc/impl/OidcClientImpl.java index ddab01e8cb5d..68fffd3fb264 100644 --- a/dspace-api/src/main/java/org/dspace/authenticate/oidc/impl/OidcClientImpl.java +++ b/dspace-api/src/main/java/org/dspace/authenticate/oidc/impl/OidcClientImpl.java @@ -14,10 +14,10 @@ import java.util.ArrayList; import java.util.List; import java.util.Map; -import javax.annotation.PostConstruct; import com.fasterxml.jackson.databind.DeserializationFeature; import com.fasterxml.jackson.databind.ObjectMapper; +import jakarta.annotation.PostConstruct; import org.apache.commons.io.IOUtils; import org.apache.http.HttpEntity; import org.apache.http.HttpResponse; diff --git a/dspace-api/src/main/java/org/dspace/authenticate/service/AuthenticationService.java b/dspace-api/src/main/java/org/dspace/authenticate/service/AuthenticationService.java index e955302ec3d7..45ad8932daec 100644 --- a/dspace-api/src/main/java/org/dspace/authenticate/service/AuthenticationService.java +++ b/dspace-api/src/main/java/org/dspace/authenticate/service/AuthenticationService.java @@ -10,8 +10,8 @@ import java.sql.SQLException; import java.util.Iterator; import java.util.List; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.authenticate.AuthenticationMethod; import org.dspace.core.Context; import org.dspace.eperson.EPerson; diff --git a/dspace-api/src/main/java/org/dspace/authority/AuthoritySolrServiceImpl.java b/dspace-api/src/main/java/org/dspace/authority/AuthoritySolrServiceImpl.java index ca5b4a11b543..2ab2bbf90266 100644 --- a/dspace-api/src/main/java/org/dspace/authority/AuthoritySolrServiceImpl.java +++ b/dspace-api/src/main/java/org/dspace/authority/AuthoritySolrServiceImpl.java @@ -11,9 +11,9 @@ import java.net.MalformedURLException; import java.util.ArrayList; import java.util.List; -import javax.inject.Inject; -import javax.inject.Named; +import jakarta.inject.Inject; +import jakarta.inject.Named; import org.apache.logging.log4j.LogManager; import org.apache.logging.log4j.Logger; import org.apache.solr.client.solrj.SolrClient; diff --git a/dspace-api/src/main/java/org/dspace/authorize/AuthorizeServiceImpl.java b/dspace-api/src/main/java/org/dspace/authorize/AuthorizeServiceImpl.java index 8a14534d985e..6cb5db91a006 100644 --- a/dspace-api/src/main/java/org/dspace/authorize/AuthorizeServiceImpl.java +++ b/dspace-api/src/main/java/org/dspace/authorize/AuthorizeServiceImpl.java @@ -572,13 +572,11 @@ public void addPolicies(Context c, List policies, DSpaceObject d List newPolicies = new ArrayList<>(policies.size()); for (ResourcePolicy srp : policies) { - ResourcePolicy rp = resourcePolicyService.create(c); + ResourcePolicy rp = resourcePolicyService.create(c, srp.getEPerson(), srp.getGroup()); // copy over values rp.setdSpaceObject(dest); rp.setAction(srp.getAction()); - rp.setEPerson(srp.getEPerson()); - rp.setGroup(srp.getGroup()); rp.setStartDate(srp.getStartDate()); rp.setEndDate(srp.getEndDate()); rp.setRpName(srp.getRpName()); @@ -692,11 +690,9 @@ public ResourcePolicy createResourcePolicy(Context context, DSpaceObject dso, Gr "We need at least an eperson or a group in order to create a resource policy."); } - ResourcePolicy myPolicy = resourcePolicyService.create(context); + ResourcePolicy myPolicy = resourcePolicyService.create(context, eperson, group); myPolicy.setdSpaceObject(dso); myPolicy.setAction(type); - myPolicy.setGroup(group); - myPolicy.setEPerson(eperson); myPolicy.setRpType(rpType); myPolicy.setRpName(rpName); myPolicy.setRpDescription(rpDescription); @@ -719,7 +715,7 @@ public ResourcePolicy createOrModifyPolicy(ResourcePolicy policy, Context contex if (!duplicates.isEmpty()) { policy = duplicates.get(0); } - } else { + } else if (group != null) { // if an identical policy (same Action and same Group) is already in place modify it... policyTemp = findByTypeGroupAction(context, dso, group, action); } diff --git a/dspace-api/src/main/java/org/dspace/authorize/FixDefaultPolicies.java b/dspace-api/src/main/java/org/dspace/authorize/FixDefaultPolicies.java index 61e783920ae5..b430a2635fd9 100644 --- a/dspace-api/src/main/java/org/dspace/authorize/FixDefaultPolicies.java +++ b/dspace-api/src/main/java/org/dspace/authorize/FixDefaultPolicies.java @@ -126,10 +126,9 @@ private static void addAnonymousPolicy(Context c, DSpaceObject t, // now create the default policies for submitted items ResourcePolicyService resourcePolicyService = AuthorizeServiceFactory.getInstance().getResourcePolicyService(); - ResourcePolicy myPolicy = resourcePolicyService.create(c); + ResourcePolicy myPolicy = resourcePolicyService.create(c, null, anonymousGroup); myPolicy.setdSpaceObject(t); myPolicy.setAction(myaction); - myPolicy.setGroup(anonymousGroup); resourcePolicyService.update(c, myPolicy); } } diff --git a/dspace-api/src/main/java/org/dspace/authorize/PolicySet.java b/dspace-api/src/main/java/org/dspace/authorize/PolicySet.java index 72998b9fd18a..e22b8e9df026 100644 --- a/dspace-api/src/main/java/org/dspace/authorize/PolicySet.java +++ b/dspace-api/src/main/java/org/dspace/authorize/PolicySet.java @@ -229,11 +229,10 @@ public static void setPoliciesFilter(Context c, int containerType, // before create a new policy check if an identical policy is already in place if (!authorizeService.isAnIdenticalPolicyAlreadyInPlace(c, myitem, group, actionID, -1)) { // now add the policy - ResourcePolicy rp = resourcePolicyService.create(c); + ResourcePolicy rp = resourcePolicyService.create(c, null, group); rp.setdSpaceObject(myitem); rp.setAction(actionID); - rp.setGroup(group); rp.setRpName(name); rp.setRpDescription(description); @@ -262,11 +261,10 @@ public static void setPoliciesFilter(Context c, int containerType, // before create a new policy check if an identical policy is already in place if (!authorizeService.isAnIdenticalPolicyAlreadyInPlace(c, bundle, group, actionID, -1)) { // now add the policy - ResourcePolicy rp = resourcePolicyService.create(c); + ResourcePolicy rp = resourcePolicyService.create(c, null, group); rp.setdSpaceObject(bundle); rp.setAction(actionID); - rp.setGroup(group); rp.setRpName(name); rp.setRpDescription(description); @@ -305,11 +303,10 @@ public static void setPoliciesFilter(Context c, int containerType, if (!authorizeService .isAnIdenticalPolicyAlreadyInPlace(c, bitstream, group, actionID, -1)) { // now add the policy - ResourcePolicy rp = resourcePolicyService.create(c); + ResourcePolicy rp = resourcePolicyService.create(c, null, group); rp.setdSpaceObject(bitstream); rp.setAction(actionID); - rp.setGroup(group); rp.setRpName(name); rp.setRpDescription(description); diff --git a/dspace-api/src/main/java/org/dspace/authorize/ResourcePolicy.java b/dspace-api/src/main/java/org/dspace/authorize/ResourcePolicy.java index c781400bae45..68a59d46ae2f 100644 --- a/dspace-api/src/main/java/org/dspace/authorize/ResourcePolicy.java +++ b/dspace-api/src/main/java/org/dspace/authorize/ResourcePolicy.java @@ -9,29 +9,28 @@ import java.util.Date; import java.util.Objects; -import javax.persistence.CascadeType; -import javax.persistence.Column; -import javax.persistence.Entity; -import javax.persistence.FetchType; -import javax.persistence.GeneratedValue; -import javax.persistence.GenerationType; -import javax.persistence.Id; -import javax.persistence.JoinColumn; -import javax.persistence.Lob; -import javax.persistence.ManyToOne; -import javax.persistence.SequenceGenerator; -import javax.persistence.Table; -import javax.persistence.Temporal; -import javax.persistence.TemporalType; +import jakarta.persistence.CascadeType; +import jakarta.persistence.Column; +import jakarta.persistence.Entity; +import jakarta.persistence.FetchType; +import jakarta.persistence.GeneratedValue; +import jakarta.persistence.GenerationType; +import jakarta.persistence.Id; +import jakarta.persistence.JoinColumn; +import jakarta.persistence.ManyToOne; +import jakarta.persistence.SequenceGenerator; +import jakarta.persistence.Table; +import jakarta.persistence.Temporal; +import jakarta.persistence.TemporalType; import org.apache.solr.common.StringUtils; import org.dspace.content.DSpaceObject; import org.dspace.core.Context; +import org.dspace.core.HibernateProxyHelper; import org.dspace.core.ReloadableEntity; import org.dspace.eperson.EPerson; import org.dspace.eperson.Group; -import org.hibernate.annotations.Type; -import org.hibernate.proxy.HibernateProxyHelper; +import org.hibernate.Length; /** * Database entity representation of the ResourcePolicy table @@ -99,9 +98,7 @@ public class ResourcePolicy implements ReloadableEntity { @Column(name = "rptype", length = 30) private String rptype; - @Lob - @Type(type = "org.hibernate.type.TextType") - @Column(name = "rpdescription") + @Column(name = "rpdescription", length = Length.LONG32) private String rpdescription; /** diff --git a/dspace-api/src/main/java/org/dspace/authorize/ResourcePolicyServiceImpl.java b/dspace-api/src/main/java/org/dspace/authorize/ResourcePolicyServiceImpl.java index d633e303bf66..25875dbdb366 100644 --- a/dspace-api/src/main/java/org/dspace/authorize/ResourcePolicyServiceImpl.java +++ b/dspace-api/src/main/java/org/dspace/authorize/ResourcePolicyServiceImpl.java @@ -71,14 +71,22 @@ public ResourcePolicy find(Context context, int id) throws SQLException { * Create a new ResourcePolicy * * @param context DSpace context object + * @param ePerson + * @param group * @return ResourcePolicy * @throws SQLException if database error */ @Override - public ResourcePolicy create(Context context) throws SQLException { + public ResourcePolicy create(Context context, EPerson ePerson, Group group) throws SQLException { // FIXME: Check authorisation // Create a table row - ResourcePolicy resourcePolicy = resourcePolicyDAO.create(context, new ResourcePolicy()); + ResourcePolicy policyToBeCreated = new ResourcePolicy(); + if (ePerson == null && group == null) { + throw new IllegalArgumentException("A resource policy must contain a valid eperson or group"); + } + policyToBeCreated.setEPerson(ePerson); + policyToBeCreated.setGroup(group); + ResourcePolicy resourcePolicy = resourcePolicyDAO.create(context, policyToBeCreated); return resourcePolicy; } @@ -210,9 +218,7 @@ public boolean isDateValid(ResourcePolicy resourcePolicy) { @Override public ResourcePolicy clone(Context context, ResourcePolicy resourcePolicy) throws SQLException, AuthorizeException { - ResourcePolicy clone = create(context); - clone.setGroup(resourcePolicy.getGroup()); - clone.setEPerson(resourcePolicy.getEPerson()); + ResourcePolicy clone = create(context, resourcePolicy.getEPerson(), resourcePolicy.getGroup()); clone.setStartDate((Date) ObjectUtils.clone(resourcePolicy.getStartDate())); clone.setEndDate((Date) ObjectUtils.clone(resourcePolicy.getEndDate())); clone.setRpType((String) ObjectUtils.clone(resourcePolicy.getRpType())); diff --git a/dspace-api/src/main/java/org/dspace/authorize/dao/impl/ResourcePolicyDAOImpl.java b/dspace-api/src/main/java/org/dspace/authorize/dao/impl/ResourcePolicyDAOImpl.java index a2fe951c4845..0bb2a8f359d5 100644 --- a/dspace-api/src/main/java/org/dspace/authorize/dao/impl/ResourcePolicyDAOImpl.java +++ b/dspace-api/src/main/java/org/dspace/authorize/dao/impl/ResourcePolicyDAOImpl.java @@ -11,17 +11,19 @@ import java.sql.SQLException; import java.util.Date; +import java.util.Collections; import java.util.LinkedList; import java.util.List; import java.util.UUID; -import javax.persistence.Query; -import javax.persistence.criteria.CriteriaBuilder; -import javax.persistence.criteria.CriteriaQuery; -import javax.persistence.criteria.Join; -import javax.persistence.criteria.Order; -import javax.persistence.criteria.Root; - -import org.apache.commons.collections4.CollectionUtils; + +import jakarta.persistence.Query; +import jakarta.persistence.criteria.CriteriaBuilder; +import jakarta.persistence.criteria.CriteriaQuery; +import jakarta.persistence.criteria.Join; +import jakarta.persistence.criteria.Order; +import jakarta.persistence.criteria.Predicate; +import jakarta.persistence.criteria.Root; +import org.apache.commons.collections.CollectionUtils; import org.dspace.authorize.ResourcePolicy; import org.dspace.authorize.ResourcePolicyOwnerVO; import org.dspace.authorize.ResourcePolicy_; @@ -175,16 +177,30 @@ public List findByTypeGroupActionExceptId(Context context, DSpac public List findByEPersonGroupTypeIdAction(Context context, EPerson e, List groups, int action, int type_id) throws SQLException { + // If groups and eperson are empty, return immediately + if (CollectionUtils.isEmpty(groups) && e == null) { + return Collections.emptyList(); + } + CriteriaBuilder criteriaBuilder = getCriteriaBuilder(context); CriteriaQuery criteriaQuery = getCriteriaQuery(criteriaBuilder, ResourcePolicy.class); Root resourcePolicyRoot = criteriaQuery.from(ResourcePolicy.class); criteriaQuery.select(resourcePolicyRoot); + + // Determine which predicate to use to match EPerson or Group(s) based on which were specified in params + Predicate compareEpersonOrGroups = + (CollectionUtils.isNotEmpty(groups) && e != null) ? + // Both are non-empty, so check both via an OR clause + criteriaBuilder.or(criteriaBuilder.equal(resourcePolicyRoot.get(ResourcePolicy_.eperson), e), + resourcePolicyRoot.get(ResourcePolicy_.epersonGroup).in(groups)) : + // Otherwise only check one based on which is non-empty + (e != null ? criteriaBuilder.equal(resourcePolicyRoot.get(ResourcePolicy_.eperson), e) : + resourcePolicyRoot.get(ResourcePolicy_.epersonGroup).in(groups)); + criteriaQuery.where( criteriaBuilder.and(criteriaBuilder.equal(resourcePolicyRoot.get(ResourcePolicy_.resourceTypeId), type_id), criteriaBuilder.equal(resourcePolicyRoot.get(ResourcePolicy_.actionId), action), - criteriaBuilder - .or(criteriaBuilder.equal(resourcePolicyRoot.get(ResourcePolicy_.eperson), e), - (resourcePolicyRoot.get(ResourcePolicy_.epersonGroup).in(groups))) + compareEpersonOrGroups ) ); return list(context, criteriaQuery, false, ResourcePolicy.class, -1, -1); @@ -308,8 +324,8 @@ public List findByEPerson(Context context, EPerson ePerson, int @Override public int countByEPerson(Context context, EPerson ePerson) throws SQLException { Query query = createQuery(context, - "SELECT count(*) FROM " + ResourcePolicy.class.getSimpleName() + " WHERE eperson_id = (:epersonUuid) "); - query.setParameter("epersonUuid", ePerson.getID()); + "SELECT count(*) FROM " + ResourcePolicy.class.getSimpleName() + " WHERE eperson = :eperson "); + query.setParameter("eperson", ePerson); return count(query); } @@ -329,9 +345,9 @@ public List findByEPersonAndResourceUuid(Context context, EPerso @Override public int countByEPersonAndResourceUuid(Context context, EPerson eperson, UUID resourceUuid) throws SQLException { Query query = createQuery(context, "SELECT count(*) FROM " + ResourcePolicy.class.getSimpleName() - + " WHERE eperson_id = (:epersonUuid) AND dspace_object = (:resourceUuid) "); + + " WHERE eperson = :eperson AND dSpaceObject.id = :resourceUuid "); query.setParameter("resourceUuid", resourceUuid); - query.setParameter("epersonUuid", eperson.getID()); + query.setParameter("eperson", eperson); return count(query); } @@ -351,7 +367,7 @@ public List findByResouceUuidAndActionId(Context context, UUID r @Override public int countByResouceUuidAndActionId(Context context, UUID resourceUuid, int actionId) throws SQLException { Query query = createQuery(context, "SELECT count(*) FROM " + ResourcePolicy.class.getSimpleName() - + " WHERE dspace_object = (:resourceUuid) AND action_id = (:actionId) "); + + " WHERE dSpaceObject.id = :resourceUuid AND actionId = :actionId "); query.setParameter("resourceUuid", resourceUuid); query.setParameter("actionId", actionId); return count(query); @@ -371,7 +387,7 @@ public List findByResouceUuid(Context context, UUID resourceUuid @Override public int countByResourceUuid(Context context, UUID resourceUuid) throws SQLException { Query query = createQuery(context, "SELECT count(*) FROM " + ResourcePolicy.class.getSimpleName() - + " WHERE dspace_object = (:resourceUuid) "); + + " WHERE dSpaceObject.id = :resourceUuid "); query.setParameter("resourceUuid", resourceUuid); return count(query); } @@ -389,8 +405,8 @@ public List findByGroup(Context context, Group group, int offset @Override public int countResourcePolicyByGroup(Context context, Group group) throws SQLException { Query query = createQuery(context, "SELECT count(*) " + "FROM " + ResourcePolicy.class.getSimpleName() - + " WHERE epersongroup_id = (:groupUuid) "); - query.setParameter("groupUuid", group.getID()); + + " WHERE epersonGroup = :group "); + query.setParameter("group", group); return count(query); } @@ -410,9 +426,9 @@ public List findByGroupAndResourceUuid(Context context, Group gr @Override public int countByGroupAndResourceUuid(Context context, Group group, UUID resourceUuid) throws SQLException { Query query = createQuery(context, "SELECT count(*) FROM " + ResourcePolicy.class.getSimpleName() - + " WHERE dspace_object = (:resourceUuid) AND epersongroup_id = (:groupUuid) "); + + " WHERE dSpaceObject.id = :resourceUuid AND epersonGroup = :group "); query.setParameter("resourceUuid", resourceUuid); - query.setParameter("groupUuid", group.getID()); + query.setParameter("group", group); return count(query); } diff --git a/dspace-api/src/main/java/org/dspace/authorize/service/ResourcePolicyService.java b/dspace-api/src/main/java/org/dspace/authorize/service/ResourcePolicyService.java index 662b14b18b2e..f099f72d65ce 100644 --- a/dspace-api/src/main/java/org/dspace/authorize/service/ResourcePolicyService.java +++ b/dspace-api/src/main/java/org/dspace/authorize/service/ResourcePolicyService.java @@ -18,7 +18,6 @@ import org.dspace.core.Context; import org.dspace.eperson.EPerson; import org.dspace.eperson.Group; -import org.dspace.service.DSpaceCRUDService; /** * Service interface class for the ResourcePolicy object. @@ -27,7 +26,34 @@ * * @author kevinvandevelde at atmire.com */ -public interface ResourcePolicyService extends DSpaceCRUDService { +public interface ResourcePolicyService { + + public ResourcePolicy create(Context context, EPerson eperson, Group group) throws SQLException, AuthorizeException; + + public ResourcePolicy find(Context context, int id) throws SQLException; + + /** + * Persist a model object. + * + * @param context + * @param resourcePolicy object to be persisted. + * @throws SQLException passed through. + * @throws AuthorizeException passed through. + */ + public void update(Context context, ResourcePolicy resourcePolicy) throws SQLException, AuthorizeException; + + + /** + * Persist a collection of model objects. + * + * @param context + * @param resourcePolicies object to be persisted. + * @throws SQLException passed through. + * @throws AuthorizeException passed through. + */ + public void update(Context context, List resourcePolicies) throws SQLException, AuthorizeException; + + public void delete(Context context, ResourcePolicy resourcePolicy) throws SQLException, AuthorizeException; public List find(Context c, DSpaceObject o) throws SQLException; diff --git a/dspace-api/src/main/java/org/dspace/browse/ItemCountDAO.java b/dspace-api/src/main/java/org/dspace/browse/ItemCountDAO.java index ab16f68d3569..6438b5745bdb 100644 --- a/dspace-api/src/main/java/org/dspace/browse/ItemCountDAO.java +++ b/dspace-api/src/main/java/org/dspace/browse/ItemCountDAO.java @@ -13,26 +13,17 @@ /** * Interface for data access of cached community and collection item count * information - * - * @author Richard Jones */ public interface ItemCountDAO { - /** - * Set the DSpace Context to use during data access - * - * @param context DSpace Context - * @throws ItemCountException if count error - */ - public void setContext(Context context) throws ItemCountException; /** * Get the number of items in the given DSpaceObject container. This method will * only succeed if the DSpaceObject is an instance of either a Community or a * Collection. Otherwise it will throw an exception. * + * @param context DSpace context * @param dso Dspace Object * @return count - * @throws ItemCountException if count error */ - public int getCount(DSpaceObject dso) throws ItemCountException; + int getCount(Context context, DSpaceObject dso); } diff --git a/dspace-api/src/main/java/org/dspace/browse/ItemCountDAOFactory.java b/dspace-api/src/main/java/org/dspace/browse/ItemCountDAOFactory.java deleted file mode 100644 index 722be645fdaa..000000000000 --- a/dspace-api/src/main/java/org/dspace/browse/ItemCountDAOFactory.java +++ /dev/null @@ -1,67 +0,0 @@ -/** - * The contents of this file are subject to the license and copyright - * detailed in the LICENSE and NOTICE files at the root of the source - * tree and available online at - * - * http://www.dspace.org/license/ - */ -package org.dspace.browse; - -import java.lang.reflect.InvocationTargetException; - -import org.dspace.core.Context; -import org.dspace.services.ConfigurationService; -import org.dspace.services.factory.DSpaceServicesFactory; - -/** - * Factory class to allow us to load the correct DAO for registering - * item count information - * - * @author Richard Jones - * @author Ivan Masár - */ -public class ItemCountDAOFactory { - - /** - * Default constructor - */ - private ItemCountDAOFactory() { } - - /** - * Get an instance of ItemCountDAO which supports the correct storage backend - * for the specific DSpace instance. - * - * @param context DSpace Context - * @return DAO - * @throws ItemCountException if count error - */ - public static ItemCountDAO getInstance(Context context) - throws ItemCountException { - - /** Log4j logger */ - ItemCountDAO dao = null; - - ConfigurationService configurationService - = DSpaceServicesFactory.getInstance().getConfigurationService(); - String className = configurationService.getProperty("ItemCountDAO.class"); - - // SOLR implementation is the default since DSpace 4.0 - if (className == null) { - dao = new ItemCountDAOSolr(); - } else { - try { - dao = (ItemCountDAO) Class.forName(className.trim()) - .getDeclaredConstructor() - .newInstance(); - } catch (ClassNotFoundException | IllegalAccessException - | InstantiationException | NoSuchMethodException - | SecurityException | IllegalArgumentException - | InvocationTargetException e) { - throw new ItemCountException("The configuration for ItemCountDAO is invalid: " + className, e); - } - } - - dao.setContext(context); - return dao; - } -} diff --git a/dspace-api/src/main/java/org/dspace/browse/ItemCountDAOSolr.java b/dspace-api/src/main/java/org/dspace/browse/ItemCountDAOSolr.java index d233270d813c..e4d0079fe20b 100644 --- a/dspace-api/src/main/java/org/dspace/browse/ItemCountDAOSolr.java +++ b/dspace-api/src/main/java/org/dspace/browse/ItemCountDAOSolr.java @@ -24,14 +24,12 @@ import org.dspace.discovery.SearchServiceException; import org.dspace.discovery.configuration.DiscoveryConfigurationParameters; import org.dspace.discovery.indexobject.IndexableItem; -import org.dspace.services.factory.DSpaceServicesFactory; +import org.springframework.beans.factory.annotation.Autowired; /** * Discovery (Solr) driver implementing ItemCountDAO interface to look up item * count information in communities and collections. Caching operations are * intentionally not implemented because Solr already is our cache. - * - * @author Ivan Masár, Andrea Bollini */ public class ItemCountDAOSolr implements ItemCountDAO { /** @@ -39,11 +37,6 @@ public class ItemCountDAOSolr implements ItemCountDAO { */ private static Logger log = org.apache.logging.log4j.LogManager.getLogger(ItemCountDAOSolr.class); - /** - * DSpace context - */ - private Context context; - /** * Hold the communities item count obtained from SOLR after the first query. This only works * well if the ItemCountDAO lifecycle is bound to the request lifecycle as @@ -61,41 +54,28 @@ public class ItemCountDAOSolr implements ItemCountDAO { /** * Solr search service */ - SearchService searcher = DSpaceServicesFactory.getInstance().getServiceManager() - .getServiceByName(SearchService.class.getName(), SearchService.class); - - /** - * Set the dspace context to use - * - * @param context DSpace Context - * @throws ItemCountException if count error - */ - @Override - public void setContext(Context context) throws ItemCountException { - this.context = context; - } + @Autowired + protected SearchService searchService; /** * Get the count of the items in the given container. * - * @param dso Dspace Context + * @param context DSpace context + * @param dso DspaceObject * @return count - * @throws ItemCountException if count error */ @Override - public int getCount(DSpaceObject dso) throws ItemCountException { - loadCount(); - Integer val; + public int getCount(Context context, DSpaceObject dso) { + loadCount(context); + Integer val = null; if (dso instanceof Collection) { - val = collectionsCount.get(String.valueOf(((Collection) dso).getID())); + val = collectionsCount.get(dso.getID().toString()); } else if (dso instanceof Community) { - val = communitiesCount.get(String.valueOf(((Community) dso).getID())); - } else { - throw new ItemCountException("We can only count items in Communities or Collections"); + val = communitiesCount.get(dso.getID().toString()); } if (val != null) { - return val.intValue(); + return val; } else { return 0; } @@ -105,15 +85,15 @@ public int getCount(DSpaceObject dso) throws ItemCountException { * make sure that the counts are actually fetched from Solr (if haven't been * cached in a Map yet) * - * @throws ItemCountException if count error + * @param context DSpace Context */ - private void loadCount() throws ItemCountException { + private void loadCount(Context context) { if (communitiesCount != null || collectionsCount != null) { return; } - communitiesCount = new HashMap(); - collectionsCount = new HashMap(); + communitiesCount = new HashMap<>(); + collectionsCount = new HashMap<>(); DiscoverQuery query = new DiscoverQuery(); query.setFacetMinCount(1); @@ -125,11 +105,13 @@ private void loadCount() throws ItemCountException { DiscoveryConfigurationParameters.SORT.COUNT)); query.addFilterQueries("search.resourcetype:" + IndexableItem.TYPE); // count only items query.addFilterQueries("NOT(discoverable:false)"); // only discoverable + query.addFilterQueries("withdrawn:false"); // only not withdrawn + query.addFilterQueries("archived:true"); // only archived query.setMaxResults(0); - DiscoverResult sResponse = null; + DiscoverResult sResponse; try { - sResponse = searcher.search(context, query); + sResponse = searchService.search(context, query); List commCount = sResponse.getFacetResult("location.comm"); List collCount = sResponse.getFacetResult("location.coll"); for (FacetResult c : commCount) { @@ -139,8 +121,7 @@ private void loadCount() throws ItemCountException { collectionsCount.put(c.getAsFilterQuery(), (int) c.getCount()); } } catch (SearchServiceException e) { - log.error("caught exception: ", e); - throw new ItemCountException(e); + log.error("Could not initialize Community/Collection Item Counts from Solr: ", e); } } } diff --git a/dspace-api/src/main/java/org/dspace/browse/ItemCountException.java b/dspace-api/src/main/java/org/dspace/browse/ItemCountException.java deleted file mode 100644 index 533e6ecceb97..000000000000 --- a/dspace-api/src/main/java/org/dspace/browse/ItemCountException.java +++ /dev/null @@ -1,32 +0,0 @@ -/** - * The contents of this file are subject to the license and copyright - * detailed in the LICENSE and NOTICE files at the root of the source - * tree and available online at - * - * http://www.dspace.org/license/ - */ -package org.dspace.browse; - -/** - * Exception type to handle item count specific problems - * - * @author Richard Jones - */ -public class ItemCountException extends Exception { - - public ItemCountException() { - } - - public ItemCountException(String message) { - super(message); - } - - public ItemCountException(Throwable cause) { - super(cause); - } - - public ItemCountException(String message, Throwable cause) { - super(message, cause); - } - -} diff --git a/dspace-api/src/main/java/org/dspace/browse/ItemCounter.java b/dspace-api/src/main/java/org/dspace/browse/ItemCounter.java index 20c43fc37298..b5a695566976 100644 --- a/dspace-api/src/main/java/org/dspace/browse/ItemCounter.java +++ b/dspace-api/src/main/java/org/dspace/browse/ItemCounter.java @@ -13,26 +13,18 @@ import org.dspace.content.Collection; import org.dspace.content.Community; import org.dspace.content.DSpaceObject; -import org.dspace.content.factory.ContentServiceFactory; import org.dspace.content.service.ItemService; import org.dspace.core.Context; import org.dspace.services.ConfigurationService; import org.dspace.services.factory.DSpaceServicesFactory; -import org.dspace.web.ContextUtil; +import org.springframework.beans.factory.annotation.Autowired; /** * This class provides a standard interface to all item counting - * operations for communities and collections. It can be run from the - * command line to prepare the cached data if desired, simply by - * running: + * operations for communities and collections. * - * java org.dspace.browse.ItemCounter - * - * It can also be invoked via its standard API. In the event that - * the data cache is not being used, this class will return direct + * In the event that the data cache is not being used, this class will return direct * real time counts of content. - * - * @author Richard Jones */ public class ItemCounter { /** @@ -40,57 +32,15 @@ public class ItemCounter { */ private static Logger log = org.apache.logging.log4j.LogManager.getLogger(ItemCounter.class); - /** - * DAO to use to store and retrieve data - */ - private ItemCountDAO dao; - - /** - * DSpace Context - */ - private Context context; - - /** - * This field is used to hold singular instance of a class. - * Singleton pattern is used but this class should be - * refactored to modern DSpace approach (injectible service). - */ - - private static ItemCounter instance; - + @Autowired protected ItemService itemService; + @Autowired protected ConfigurationService configurationService; - private boolean showStrengths; - private boolean useCache; - - /** - * Construct a new item counter which will use the given DSpace Context - * - * @param context current context - * @throws ItemCountException if count error - */ - public ItemCounter(Context context) throws ItemCountException { - this.context = context; - this.dao = ItemCountDAOFactory.getInstance(this.context); - this.itemService = ContentServiceFactory.getInstance().getItemService(); - this.configurationService = DSpaceServicesFactory.getInstance().getConfigurationService(); - this.showStrengths = configurationService.getBooleanProperty("webui.strengths.show", false); - this.useCache = configurationService.getBooleanProperty("webui.strengths.cache", true); - } - /** - * Get the singular instance of a class. - * It creates a new instance at the first usage of this method. - * - * @return instance af a class - * @throws ItemCountException when error occurs + * Construct a new item counter */ - public static ItemCounter getInstance() throws ItemCountException { - if (instance == null) { - instance = new ItemCounter(ContextUtil.obtainCurrentRequestContext()); - } - return instance; + protected ItemCounter() { } /** @@ -103,17 +53,24 @@ public static ItemCounter getInstance() throws ItemCountException { * If it is equal to 'false' it will count the number of items * in the container in real time. * + * @param context DSpace Context * @param dso DSpaceObject - * @return count - * @throws ItemCountException when error occurs + * @return count (-1 is returned if count could not be determined or is disabled) */ - public int getCount(DSpaceObject dso) throws ItemCountException { + public int getCount(Context context, DSpaceObject dso) { + boolean showStrengths = configurationService.getBooleanProperty("webui.strengths.show", false); + boolean useCache = configurationService.getBooleanProperty("webui.strengths.cache", true); if (!showStrengths) { return -1; } if (useCache) { - return dao.getCount(dso); + // NOTE: This bean is NOT Autowired above because it's a "prototype" bean which we want to reload + // occasionally. Each time the bean reloads it will update the cached item counts. + ItemCountDAO dao = + DSpaceServicesFactory.getInstance().getServiceManager().getServiceByName("itemCountDAO", + ItemCountDAO.class); + return dao.getCount(context, dso); } // if we make it this far, we need to manually count @@ -121,8 +78,8 @@ public int getCount(DSpaceObject dso) throws ItemCountException { try { return itemService.countItems(context, (Collection) dso); } catch (SQLException e) { - log.error("caught exception: ", e); - throw new ItemCountException(e); + log.error("Error counting number of Items in Collection {} :", dso.getID(), e); + return -1; } } @@ -130,8 +87,8 @@ public int getCount(DSpaceObject dso) throws ItemCountException { try { return itemService.countItems(context, ((Community) dso)); } catch (SQLException e) { - log.error("caught exception: ", e); - throw new ItemCountException(e); + log.error("Error counting number of Items in Community {} :", dso.getID(), e); + return -1; } } diff --git a/dspace-api/src/main/java/org/dspace/checker/ChecksumHistory.java b/dspace-api/src/main/java/org/dspace/checker/ChecksumHistory.java index 63779cda02fb..521bf546a4f2 100644 --- a/dspace-api/src/main/java/org/dspace/checker/ChecksumHistory.java +++ b/dspace-api/src/main/java/org/dspace/checker/ChecksumHistory.java @@ -8,19 +8,19 @@ package org.dspace.checker; import java.util.Date; -import javax.persistence.Column; -import javax.persistence.Entity; -import javax.persistence.FetchType; -import javax.persistence.GeneratedValue; -import javax.persistence.GenerationType; -import javax.persistence.Id; -import javax.persistence.JoinColumn; -import javax.persistence.ManyToOne; -import javax.persistence.SequenceGenerator; -import javax.persistence.Table; -import javax.persistence.Temporal; -import javax.persistence.TemporalType; +import jakarta.persistence.Column; +import jakarta.persistence.Entity; +import jakarta.persistence.FetchType; +import jakarta.persistence.GeneratedValue; +import jakarta.persistence.GenerationType; +import jakarta.persistence.Id; +import jakarta.persistence.JoinColumn; +import jakarta.persistence.ManyToOne; +import jakarta.persistence.SequenceGenerator; +import jakarta.persistence.Table; +import jakarta.persistence.Temporal; +import jakarta.persistence.TemporalType; import org.dspace.content.Bitstream; import org.dspace.core.Context; import org.dspace.core.ReloadableEntity; diff --git a/dspace-api/src/main/java/org/dspace/checker/ChecksumResult.java b/dspace-api/src/main/java/org/dspace/checker/ChecksumResult.java index 57fcdb8e365e..a63488077703 100644 --- a/dspace-api/src/main/java/org/dspace/checker/ChecksumResult.java +++ b/dspace-api/src/main/java/org/dspace/checker/ChecksumResult.java @@ -8,12 +8,13 @@ package org.dspace.checker; import java.io.Serializable; -import javax.persistence.Column; -import javax.persistence.Entity; -import javax.persistence.EnumType; -import javax.persistence.Enumerated; -import javax.persistence.Id; -import javax.persistence.Table; + +import jakarta.persistence.Column; +import jakarta.persistence.Entity; +import jakarta.persistence.EnumType; +import jakarta.persistence.Enumerated; +import jakarta.persistence.Id; +import jakarta.persistence.Table; /** * Database entity representation of the checksum_results table diff --git a/dspace-api/src/main/java/org/dspace/checker/DailyReportEmailer.java b/dspace-api/src/main/java/org/dspace/checker/DailyReportEmailer.java index b291232e8b55..50ef4baa98e3 100644 --- a/dspace-api/src/main/java/org/dspace/checker/DailyReportEmailer.java +++ b/dspace-api/src/main/java/org/dspace/checker/DailyReportEmailer.java @@ -13,8 +13,8 @@ import java.sql.SQLException; import java.util.Date; import java.util.GregorianCalendar; -import javax.mail.MessagingException; +import jakarta.mail.MessagingException; import org.apache.commons.cli.CommandLine; import org.apache.commons.cli.CommandLineParser; import org.apache.commons.cli.DefaultParser; @@ -63,7 +63,7 @@ public DailyReportEmailer() { * @throws MessagingException if message cannot be sent. */ public void sendReport(File attachment, int numberOfBitstreams) - throws IOException, javax.mail.MessagingException { + throws IOException, jakarta.mail.MessagingException { if (numberOfBitstreams > 0) { ConfigurationService configurationService = DSpaceServicesFactory.getInstance().getConfigurationService(); diff --git a/dspace-api/src/main/java/org/dspace/checker/MostRecentChecksum.java b/dspace-api/src/main/java/org/dspace/checker/MostRecentChecksum.java index eff8a8be1cde..5cb1851e7c4f 100644 --- a/dspace-api/src/main/java/org/dspace/checker/MostRecentChecksum.java +++ b/dspace-api/src/main/java/org/dspace/checker/MostRecentChecksum.java @@ -9,16 +9,16 @@ import java.io.Serializable; import java.util.Date; -import javax.persistence.Column; -import javax.persistence.Entity; -import javax.persistence.Id; -import javax.persistence.JoinColumn; -import javax.persistence.OneToOne; -import javax.persistence.Table; -import javax.persistence.Temporal; -import javax.persistence.TemporalType; -import javax.persistence.Transient; +import jakarta.persistence.Column; +import jakarta.persistence.Entity; +import jakarta.persistence.Id; +import jakarta.persistence.JoinColumn; +import jakarta.persistence.OneToOne; +import jakarta.persistence.Table; +import jakarta.persistence.Temporal; +import jakarta.persistence.TemporalType; +import jakarta.persistence.Transient; import org.apache.commons.lang3.builder.EqualsBuilder; import org.apache.commons.lang3.builder.HashCodeBuilder; import org.dspace.content.Bitstream; diff --git a/dspace-api/src/main/java/org/dspace/checker/dao/impl/ChecksumHistoryDAOImpl.java b/dspace-api/src/main/java/org/dspace/checker/dao/impl/ChecksumHistoryDAOImpl.java index 328d4a717eb1..44c594d0eb32 100644 --- a/dspace-api/src/main/java/org/dspace/checker/dao/impl/ChecksumHistoryDAOImpl.java +++ b/dspace-api/src/main/java/org/dspace/checker/dao/impl/ChecksumHistoryDAOImpl.java @@ -9,9 +9,9 @@ import java.sql.SQLException; import java.util.Date; -import javax.persistence.Query; -import javax.persistence.TemporalType; +import jakarta.persistence.Query; +import jakarta.persistence.TemporalType; import org.dspace.checker.ChecksumHistory; import org.dspace.checker.ChecksumResultCode; import org.dspace.checker.dao.ChecksumHistoryDAO; diff --git a/dspace-api/src/main/java/org/dspace/checker/dao/impl/ChecksumResultDAOImpl.java b/dspace-api/src/main/java/org/dspace/checker/dao/impl/ChecksumResultDAOImpl.java index 7552c6d5bb8f..ac882e971dfe 100644 --- a/dspace-api/src/main/java/org/dspace/checker/dao/impl/ChecksumResultDAOImpl.java +++ b/dspace-api/src/main/java/org/dspace/checker/dao/impl/ChecksumResultDAOImpl.java @@ -8,10 +8,10 @@ package org.dspace.checker.dao.impl; import java.sql.SQLException; -import javax.persistence.criteria.CriteriaBuilder; -import javax.persistence.criteria.CriteriaQuery; -import javax.persistence.criteria.Root; +import jakarta.persistence.criteria.CriteriaBuilder; +import jakarta.persistence.criteria.CriteriaQuery; +import jakarta.persistence.criteria.Root; import org.dspace.checker.ChecksumResult; import org.dspace.checker.ChecksumResultCode; import org.dspace.checker.ChecksumResult_; diff --git a/dspace-api/src/main/java/org/dspace/checker/dao/impl/MostRecentChecksumDAOImpl.java b/dspace-api/src/main/java/org/dspace/checker/dao/impl/MostRecentChecksumDAOImpl.java index a31e02cbab4a..669621aeeb58 100644 --- a/dspace-api/src/main/java/org/dspace/checker/dao/impl/MostRecentChecksumDAOImpl.java +++ b/dspace-api/src/main/java/org/dspace/checker/dao/impl/MostRecentChecksumDAOImpl.java @@ -11,14 +11,14 @@ import java.util.Date; import java.util.LinkedList; import java.util.List; -import javax.persistence.Query; -import javax.persistence.criteria.CriteriaBuilder; -import javax.persistence.criteria.CriteriaQuery; -import javax.persistence.criteria.Join; -import javax.persistence.criteria.Order; -import javax.persistence.criteria.Root; -import javax.persistence.criteria.Subquery; +import jakarta.persistence.Query; +import jakarta.persistence.criteria.CriteriaBuilder; +import jakarta.persistence.criteria.CriteriaQuery; +import jakarta.persistence.criteria.Join; +import jakarta.persistence.criteria.Order; +import jakarta.persistence.criteria.Root; +import jakarta.persistence.criteria.Subquery; import org.dspace.checker.ChecksumHistory; import org.dspace.checker.ChecksumHistory_; import org.dspace.checker.ChecksumResult; diff --git a/dspace-api/src/main/java/org/dspace/content/Bitstream.java b/dspace-api/src/main/java/org/dspace/content/Bitstream.java index 5485735a2816..3fdb6316b210 100644 --- a/dspace-api/src/main/java/org/dspace/content/Bitstream.java +++ b/dspace-api/src/main/java/org/dspace/content/Bitstream.java @@ -11,21 +11,21 @@ import java.sql.SQLException; import java.util.ArrayList; import java.util.List; -import javax.persistence.Column; -import javax.persistence.Entity; -import javax.persistence.FetchType; -import javax.persistence.JoinColumn; -import javax.persistence.ManyToMany; -import javax.persistence.ManyToOne; -import javax.persistence.OneToOne; -import javax.persistence.Table; -import javax.persistence.Transient; +import jakarta.persistence.Column; +import jakarta.persistence.Entity; +import jakarta.persistence.FetchType; +import jakarta.persistence.JoinColumn; +import jakarta.persistence.ManyToMany; +import jakarta.persistence.ManyToOne; +import jakarta.persistence.OneToOne; +import jakarta.persistence.Table; +import jakarta.persistence.Transient; import org.dspace.content.factory.ContentServiceFactory; import org.dspace.content.service.BitstreamService; import org.dspace.core.Constants; import org.dspace.core.Context; -import org.hibernate.proxy.HibernateProxyHelper; +import org.dspace.core.HibernateProxyHelper; /** * Class representing bitstreams stored in the DSpace system. diff --git a/dspace-api/src/main/java/org/dspace/content/BitstreamFormat.java b/dspace-api/src/main/java/org/dspace/content/BitstreamFormat.java index 6d64ee3073e9..4dacea0952a5 100644 --- a/dspace-api/src/main/java/org/dspace/content/BitstreamFormat.java +++ b/dspace-api/src/main/java/org/dspace/content/BitstreamFormat.java @@ -11,27 +11,28 @@ import java.sql.SQLException; import java.util.ArrayList; import java.util.List; -import javax.persistence.CollectionTable; -import javax.persistence.Column; -import javax.persistence.ElementCollection; -import javax.persistence.Entity; -import javax.persistence.FetchType; -import javax.persistence.GeneratedValue; -import javax.persistence.GenerationType; -import javax.persistence.Id; -import javax.persistence.JoinColumn; -import javax.persistence.SequenceGenerator; -import javax.persistence.Table; -import javax.persistence.Transient; +import jakarta.persistence.CollectionTable; +import jakarta.persistence.Column; +import jakarta.persistence.ElementCollection; +import jakarta.persistence.Entity; +import jakarta.persistence.FetchType; +import jakarta.persistence.GeneratedValue; +import jakarta.persistence.GenerationType; +import jakarta.persistence.Id; +import jakarta.persistence.JoinColumn; +import jakarta.persistence.SequenceGenerator; +import jakarta.persistence.Table; +import jakarta.persistence.Transient; import org.dspace.content.factory.ContentServiceFactory; import org.dspace.content.service.BitstreamFormatService; import org.dspace.core.Context; +import org.dspace.core.HibernateProxyHelper; import org.dspace.core.ReloadableEntity; import org.hibernate.annotations.Cascade; import org.hibernate.annotations.CollectionId; -import org.hibernate.annotations.Type; -import org.hibernate.proxy.HibernateProxyHelper; +import org.hibernate.annotations.CollectionIdJavaType; +import org.hibernate.type.descriptor.java.IntegerJavaType; /** * Class representing a particular bitstream format. @@ -55,8 +56,6 @@ public class BitstreamFormat implements Serializable, ReloadableEntity @Column(name = "short_description", length = 128, unique = true) private String shortDescription; - // @Column(name="description") -// @Lob //Generates a TEXT or LONGTEXT data type @Column(name = "description", columnDefinition = "text") private String description; @@ -73,10 +72,10 @@ public class BitstreamFormat implements Serializable, ReloadableEntity @ElementCollection(fetch = FetchType.EAGER) @CollectionTable(name = "fileextension", joinColumns = @JoinColumn(name = "bitstream_format_id")) @CollectionId( - columns = @Column(name = "file_extension_id"), - type = @Type(type = "integer"), + column = @Column(name = "file_extension_id"), generator = "fileextension_seq" ) + @CollectionIdJavaType(IntegerJavaType.class) @SequenceGenerator(name = "fileextension_seq", sequenceName = "fileextension_seq", allocationSize = 1) @Column(name = "extension") @Cascade( {org.hibernate.annotations.CascadeType.ALL, org.hibernate.annotations.CascadeType.DELETE_ORPHAN}) diff --git a/dspace-api/src/main/java/org/dspace/content/BitstreamServiceImpl.java b/dspace-api/src/main/java/org/dspace/content/BitstreamServiceImpl.java index 07b4f4073634..90f59f58163f 100644 --- a/dspace-api/src/main/java/org/dspace/content/BitstreamServiceImpl.java +++ b/dspace-api/src/main/java/org/dspace/content/BitstreamServiceImpl.java @@ -23,8 +23,8 @@ import java.util.stream.Collectors; import java.util.stream.Stream; import java.util.stream.StreamSupport; -import javax.annotation.Nullable; +import jakarta.annotation.Nullable; import org.apache.commons.collections4.CollectionUtils; import org.apache.commons.lang3.StringUtils; import org.apache.logging.log4j.Logger; diff --git a/dspace-api/src/main/java/org/dspace/content/Bundle.java b/dspace-api/src/main/java/org/dspace/content/Bundle.java index e5cbdb6ff244..b6fd269f8fc4 100644 --- a/dspace-api/src/main/java/org/dspace/content/Bundle.java +++ b/dspace-api/src/main/java/org/dspace/content/Bundle.java @@ -10,22 +10,22 @@ import java.sql.SQLException; import java.util.ArrayList; import java.util.List; -import javax.persistence.Column; -import javax.persistence.Entity; -import javax.persistence.FetchType; -import javax.persistence.JoinColumn; -import javax.persistence.JoinTable; -import javax.persistence.ManyToMany; -import javax.persistence.OneToOne; -import javax.persistence.OrderColumn; -import javax.persistence.Table; -import javax.persistence.Transient; +import jakarta.persistence.Column; +import jakarta.persistence.Entity; +import jakarta.persistence.FetchType; +import jakarta.persistence.JoinColumn; +import jakarta.persistence.JoinTable; +import jakarta.persistence.ManyToMany; +import jakarta.persistence.OneToOne; +import jakarta.persistence.OrderColumn; +import jakarta.persistence.Table; +import jakarta.persistence.Transient; import org.dspace.content.factory.ContentServiceFactory; import org.dspace.content.service.BundleService; import org.dspace.core.Constants; import org.dspace.core.Context; -import org.hibernate.proxy.HibernateProxyHelper; +import org.dspace.core.HibernateProxyHelper; /** * Class representing bundles of bitstreams stored in the DSpace system diff --git a/dspace-api/src/main/java/org/dspace/content/CacheableDSpaceObject.java b/dspace-api/src/main/java/org/dspace/content/CacheableDSpaceObject.java new file mode 100644 index 000000000000..fa6ec7676a32 --- /dev/null +++ b/dspace-api/src/main/java/org/dspace/content/CacheableDSpaceObject.java @@ -0,0 +1,20 @@ +/** + * The contents of this file are subject to the license and copyright + * detailed in the LICENSE and NOTICE files at the root of the source + * tree and available online at + * + * http://www.dspace.org/license/ + */ +package org.dspace.content; + +import jakarta.persistence.Cacheable; +import org.hibernate.annotations.CacheConcurrencyStrategy; + +/** + * Abstract class for DSpaceObjects which are safe to cache in Hibernate's second level cache. + * See hibernate-ehcache-config.xml for caching configurations for each DSpaceObject which extends this class. + */ +@Cacheable +@org.hibernate.annotations.Cache(usage = CacheConcurrencyStrategy.NONSTRICT_READ_WRITE, include = "non-lazy") +public abstract class CacheableDSpaceObject extends DSpaceObject { +} diff --git a/dspace-api/src/main/java/org/dspace/content/Collection.java b/dspace-api/src/main/java/org/dspace/content/Collection.java index acce5c69bf08..6cedb0290aba 100644 --- a/dspace-api/src/main/java/org/dspace/content/Collection.java +++ b/dspace-api/src/main/java/org/dspace/content/Collection.java @@ -15,29 +15,26 @@ import java.util.List; import java.util.Set; import java.util.UUID; -import javax.annotation.Nonnull; -import javax.persistence.Cacheable; -import javax.persistence.CascadeType; -import javax.persistence.Column; -import javax.persistence.Entity; -import javax.persistence.FetchType; -import javax.persistence.JoinColumn; -import javax.persistence.JoinTable; -import javax.persistence.ManyToMany; -import javax.persistence.OneToOne; -import javax.persistence.Table; -import javax.persistence.Transient; +import jakarta.annotation.Nonnull; +import jakarta.persistence.CascadeType; +import jakarta.persistence.Column; +import jakarta.persistence.Entity; +import jakarta.persistence.FetchType; +import jakarta.persistence.JoinColumn; +import jakarta.persistence.JoinTable; +import jakarta.persistence.ManyToMany; +import jakarta.persistence.OneToOne; +import jakarta.persistence.Table; +import jakarta.persistence.Transient; import org.dspace.authorize.AuthorizeException; -import org.dspace.browse.ItemCountException; import org.dspace.content.comparator.NameAscendingComparator; import org.dspace.content.factory.ContentServiceFactory; import org.dspace.content.service.CollectionService; import org.dspace.core.Constants; import org.dspace.core.Context; +import org.dspace.core.HibernateProxyHelper; import org.dspace.eperson.Group; -import org.hibernate.annotations.CacheConcurrencyStrategy; -import org.hibernate.proxy.HibernateProxyHelper; /** * Class representing a collection. @@ -54,9 +51,7 @@ */ @Entity @Table(name = "collection") -@Cacheable -@org.hibernate.annotations.Cache(usage = CacheConcurrencyStrategy.NONSTRICT_READ_WRITE, include = "non-lazy") -public class Collection extends DSpaceObject implements DSpaceObjectLegacySupport { +public class Collection extends CacheableDSpaceObject implements DSpaceObjectLegacySupport { @Column(name = "collection_id", insertable = false, updatable = false) private Integer legacyId; @@ -344,18 +339,4 @@ private CollectionService getCollectionService() { } return collectionService; } - - /** - * return count of the collection items - * - * @return int - */ - public int countArchivedItems() { - try { - return collectionService.countArchivedItems(this); - } catch (ItemCountException e) { - throw new RuntimeException(e); - } - } - } diff --git a/dspace-api/src/main/java/org/dspace/content/CollectionServiceImpl.java b/dspace-api/src/main/java/org/dspace/content/CollectionServiceImpl.java index 20c05dc0915b..85d50c888100 100644 --- a/dspace-api/src/main/java/org/dspace/content/CollectionServiceImpl.java +++ b/dspace-api/src/main/java/org/dspace/content/CollectionServiceImpl.java @@ -35,7 +35,6 @@ import org.dspace.authorize.ResourcePolicy; import org.dspace.authorize.service.AuthorizeService; import org.dspace.authorize.service.ResourcePolicyService; -import org.dspace.browse.ItemCountException; import org.dspace.browse.ItemCounter; import org.dspace.content.dao.CollectionDAO; import org.dspace.content.service.BitstreamService; @@ -136,6 +135,9 @@ public class CollectionServiceImpl extends DSpaceObjectServiceImpl i @Autowired(required = true) protected WorkflowItemService workflowItemService; + @Autowired + protected ItemCounter itemCounter; + protected CollectionServiceImpl() { super(); } @@ -1304,13 +1306,13 @@ public List findAllCollectionsByEntityType(Context context, String e /** * Returns total collection archived items * + * @param context DSpace Context * @param collection Collection * @return total collection archived items - * @throws ItemCountException */ @Override - public int countArchivedItems(Collection collection) throws ItemCountException { - return ItemCounter.getInstance().getCount(collection); + public int countArchivedItems(Context context, Collection collection) { + return itemCounter.getCount(context, collection); } @Override diff --git a/dspace-api/src/main/java/org/dspace/content/Community.java b/dspace-api/src/main/java/org/dspace/content/Community.java index d82e08bab72e..7f362d2f1610 100644 --- a/dspace-api/src/main/java/org/dspace/content/Community.java +++ b/dspace-api/src/main/java/org/dspace/content/Community.java @@ -12,28 +12,26 @@ import java.util.List; import java.util.Set; import java.util.UUID; -import javax.persistence.Cacheable; -import javax.persistence.CascadeType; -import javax.persistence.Column; -import javax.persistence.Entity; -import javax.persistence.FetchType; -import javax.persistence.JoinColumn; -import javax.persistence.JoinTable; -import javax.persistence.ManyToMany; -import javax.persistence.OneToOne; -import javax.persistence.Table; -import javax.persistence.Transient; +import jakarta.persistence.CascadeType; +import jakarta.persistence.Column; +import jakarta.persistence.Entity; +import jakarta.persistence.FetchType; +import jakarta.persistence.JoinColumn; +import jakarta.persistence.JoinTable; +import jakarta.persistence.ManyToMany; +import jakarta.persistence.OneToOne; +import jakarta.persistence.Table; +import jakarta.persistence.Transient; import org.apache.commons.lang3.builder.HashCodeBuilder; -import org.dspace.browse.ItemCountException; import org.dspace.content.comparator.NameAscendingComparator; import org.dspace.content.factory.ContentServiceFactory; import org.dspace.content.service.CommunityService; import org.dspace.core.Constants; import org.dspace.core.Context; +import org.dspace.core.HibernateProxyHelper; import org.dspace.eperson.Group; -import org.hibernate.annotations.CacheConcurrencyStrategy; -import org.hibernate.proxy.HibernateProxyHelper; + /** * Class representing a community @@ -46,9 +44,7 @@ */ @Entity @Table(name = "community") -@Cacheable -@org.hibernate.annotations.Cache(usage = CacheConcurrencyStrategy.NONSTRICT_READ_WRITE, include = "non-lazy") -public class Community extends DSpaceObject implements DSpaceObjectLegacySupport { +public class Community extends CacheableDSpaceObject implements DSpaceObjectLegacySupport { @Column(name = "community_id", insertable = false, updatable = false) private Integer legacyId; @@ -267,17 +263,4 @@ private CommunityService getCommunityService() { } return communityService; } - - /** - * return count of the community items - * - * @return int - */ - public int countArchivedItems() { - try { - return communityService.countArchivedItems(this); - } catch (ItemCountException e) { - throw new RuntimeException(e); - } - } } diff --git a/dspace-api/src/main/java/org/dspace/content/CommunityServiceImpl.java b/dspace-api/src/main/java/org/dspace/content/CommunityServiceImpl.java index 636b0f3a62a9..70f8e791bb7f 100644 --- a/dspace-api/src/main/java/org/dspace/content/CommunityServiceImpl.java +++ b/dspace-api/src/main/java/org/dspace/content/CommunityServiceImpl.java @@ -25,7 +25,6 @@ import org.dspace.authorize.AuthorizeException; import org.dspace.authorize.ResourcePolicy; import org.dspace.authorize.service.AuthorizeService; -import org.dspace.browse.ItemCountException; import org.dspace.browse.ItemCounter; import org.dspace.content.dao.CommunityDAO; import org.dspace.content.service.BitstreamService; @@ -81,6 +80,8 @@ public class CommunityServiceImpl extends DSpaceObjectServiceImpl imp protected SubscribeService subscribeService; @Autowired(required = true) protected CrisMetricsService crisMetricsService; + @Autowired + protected ItemCounter itemCounter; protected CommunityServiceImpl() { super(); @@ -722,13 +723,13 @@ public int countTotal(Context context) throws SQLException { /** * Returns total community archived items * + * @param context DSpace context * @param community Community * @return total community archived items - * @throws ItemCountException */ @Override - public int countArchivedItems(Community community) throws ItemCountException { - return ItemCounter.getInstance().getCount(community); + public int countArchivedItems(Context context, Community community) { + return itemCounter.getCount(context, community); } @Override diff --git a/dspace-api/src/main/java/org/dspace/content/DCDate.java b/dspace-api/src/main/java/org/dspace/content/DCDate.java index d58aff7b1e22..163e21cdc2c5 100644 --- a/dspace-api/src/main/java/org/dspace/content/DCDate.java +++ b/dspace-api/src/main/java/org/dspace/content/DCDate.java @@ -80,6 +80,9 @@ private enum DateGran { YEAR, MONTH, DAY, TIME } // just year, "2009" private final SimpleDateFormat yearIso = new SimpleDateFormat("yyyy"); + // Additional iso-like format which contains milliseconds + private final SimpleDateFormat fullIsoWithMs = new SimpleDateFormat("yyyy-MM-dd'T'HH:mm:ss'.000'"); + private static Map dfsLocaleMap = new HashMap(); /** @@ -193,6 +196,9 @@ public DCDate(String fromDC) { if (date == null) { date = tryParse(fullIso4, fromDC); } + if (date == null) { + date = tryParse(fullIsoWithMs, fromDC); + } if (date == null) { // Seems there is no time component to the date. date = tryParse(dateIso, fromDC); @@ -244,6 +250,7 @@ private void setUTCForFormatting() { dateIso.setTimeZone(utcZone); yearMonthIso.setTimeZone(utcZone); yearIso.setTimeZone(utcZone); + fullIsoWithMs.setTimeZone(utcZone); } // Attempt to parse, swallowing errors; return null for failure. diff --git a/dspace-api/src/main/java/org/dspace/content/DSpaceObject.java b/dspace-api/src/main/java/org/dspace/content/DSpaceObject.java index cd9e64db7cbe..76426392d10f 100644 --- a/dspace-api/src/main/java/org/dspace/content/DSpaceObject.java +++ b/dspace-api/src/main/java/org/dspace/content/DSpaceObject.java @@ -11,19 +11,19 @@ import java.util.ArrayList; import java.util.List; import java.util.UUID; -import javax.persistence.CascadeType; -import javax.persistence.Column; -import javax.persistence.Entity; -import javax.persistence.FetchType; -import javax.persistence.GeneratedValue; -import javax.persistence.Id; -import javax.persistence.Inheritance; -import javax.persistence.InheritanceType; -import javax.persistence.OneToMany; -import javax.persistence.OrderBy; -import javax.persistence.Table; -import javax.persistence.Transient; +import jakarta.persistence.CascadeType; +import jakarta.persistence.Column; +import jakarta.persistence.Entity; +import jakarta.persistence.FetchType; +import jakarta.persistence.GeneratedValue; +import jakarta.persistence.Id; +import jakarta.persistence.Inheritance; +import jakarta.persistence.InheritanceType; +import jakarta.persistence.OneToMany; +import jakarta.persistence.OrderBy; +import jakarta.persistence.Table; +import jakarta.persistence.Transient; import org.apache.commons.collections4.CollectionUtils; import org.dspace.authorize.ResourcePolicy; import org.dspace.core.ReloadableEntity; diff --git a/dspace-api/src/main/java/org/dspace/content/DSpaceObjectServiceImpl.java b/dspace-api/src/main/java/org/dspace/content/DSpaceObjectServiceImpl.java index f520bbfbfdce..69262b58c070 100644 --- a/dspace-api/src/main/java/org/dspace/content/DSpaceObjectServiceImpl.java +++ b/dspace-api/src/main/java/org/dspace/content/DSpaceObjectServiceImpl.java @@ -250,6 +250,20 @@ public List addMetadata(Context context, T dso, MetadataField met } + /** + * Add metadata value(s) to a MetadataField of a DSpace Object + * @param context current DSpace context + * @param dso DSpaceObject to modify + * @param metadataField MetadataField to add values to + * @param lang Language code to add + * @param values One or more metadata values to add + * @param authorities One or more authorities to add + * @param confidences One or more confidences to add (for authorities) + * @param placeSupplier Supplier of "place" for new metadata values + * @return List of newly added metadata values + * @throws SQLException if database error occurs + * @throws IllegalArgumentException for an empty list of values + */ public List addMetadata(Context context, T dso, MetadataField metadataField, String lang, List values, List authorities, List confidences, Supplier placeSupplier) throws SQLException { @@ -275,6 +289,13 @@ public List addMetadata(Context context, T dso, MetadataField met boolean authorityRequired = metadataAuthorityService.isAuthorityRequired(metadataField, dso.getType(), collection); + // Throw an error if we are attempting to add empty values + if (values == null || values.isEmpty()) { + throw new IllegalArgumentException("Cannot add empty values to a new metadata field " + + metadataField.toString() + " on object with uuid = " + + dso.getID().toString() + " and type = " + getTypeText(dso)); + } + List newMetadata = new ArrayList<>(); // We will not verify that they are valid entries in the registry // until update() is called. @@ -432,20 +453,26 @@ public void addAndShiftRightSecuredMetadata(Context context, T dso, String schem @Override public MetadataValue addMetadata(Context context, T dso, MetadataField metadataField, String language, String value, String authority, int confidence) throws SQLException { - return addMetadata(context, dso, metadataField, language, Arrays.asList(value), Arrays.asList(authority), - Arrays.asList(confidence)).get(0); + List metadataValues = + addMetadata(context, dso, metadataField, language, Arrays.asList(value), Arrays.asList(authority), + Arrays.asList(confidence)); + return CollectionUtils.isNotEmpty(metadataValues) ? metadataValues.get(0) : null; } @Override public MetadataValue addMetadata(Context context, T dso, String schema, String element, String qualifier, String lang, String value) throws SQLException { - return addMetadata(context, dso, schema, element, qualifier, lang, Arrays.asList(value)).get(0); + List metadataValues = + addMetadata(context, dso, schema, element, qualifier, lang, Arrays.asList(value)); + return CollectionUtils.isNotEmpty(metadataValues) ? metadataValues.get(0) : null; } @Override public MetadataValue addMetadata(Context context, T dso, MetadataField metadataField, String language, String value) throws SQLException { - return addMetadata(context, dso, metadataField, language, Arrays.asList(value)).get(0); + List metadataValues = + addMetadata(context, dso, metadataField, language, Arrays.asList(value)); + return CollectionUtils.isNotEmpty(metadataValues) ? metadataValues.get(0) : null; } @Override @@ -800,6 +827,7 @@ public void update(Context context, T dso) throws SQLException, AuthorizeExcepti // E.g. for an Author relationship, // the place should be updated using the same principle as dc.contributor.author. StringUtils.startsWith(metadataValue.getAuthority(), Constants.VIRTUAL_AUTHORITY_PREFIX) + && metadataValue instanceof RelationshipMetadataValue && ((RelationshipMetadataValue) metadataValue).isUseForPlace() ) { int mvPlace = getMetadataValuePlace(fieldToLastPlace, metadataValue); diff --git a/dspace-api/src/main/java/org/dspace/content/EntityServiceImpl.java b/dspace-api/src/main/java/org/dspace/content/EntityServiceImpl.java index 2f34129f2e69..9b28203827e0 100644 --- a/dspace-api/src/main/java/org/dspace/content/EntityServiceImpl.java +++ b/dspace-api/src/main/java/org/dspace/content/EntityServiceImpl.java @@ -8,6 +8,7 @@ package org.dspace.content; import java.sql.SQLException; +import java.util.Collections; import java.util.LinkedList; import java.util.List; import java.util.UUID; @@ -51,12 +52,7 @@ public Entity findByItemId(Context context, UUID itemId, Integer limit, Integer @Override public EntityType getType(Context context, Entity entity) throws SQLException { Item item = entity.getItem(); - List list = itemService.getMetadata(item, "dspace", "entity", "type", Item.ANY, false); - if (!list.isEmpty()) { - return entityTypeService.findByEntityType(context, list.get(0).getValue()); - } else { - return null; - } + return itemService.getEntityType(context, item); } @Override @@ -103,7 +99,12 @@ public List getAllRelationshipTypes(Context context, Entity en @Override public List getAllRelationshipTypes(Context context, Entity entity, Integer limit, Integer offset) throws SQLException { - return relationshipTypeService.findByEntityType(context, this.getType(context, entity), limit, offset); + EntityType entityType = this.getType(context, entity); + if (entityType != null) { + return relationshipTypeService.findByEntityType(context, entityType, limit, offset); + } else { + return Collections.emptyList(); + } } @Override @@ -115,7 +116,12 @@ public List getLeftRelationshipTypes(Context context, Entity e @Override public List getLeftRelationshipTypes(Context context, Entity entity, boolean isLeft, Integer limit, Integer offset) throws SQLException { - return relationshipTypeService.findByEntityType(context, this.getType(context, entity), isLeft, limit, offset); + EntityType entityType = this.getType(context, entity); + if (entityType != null) { + return relationshipTypeService.findByEntityType(context, entityType, isLeft, limit, offset); + } else { + return Collections.emptyList(); + } } @Override @@ -128,7 +134,12 @@ public List getRightRelationshipTypes(Context context, Entity public List getRightRelationshipTypes(Context context, Entity entity, boolean isLeft, Integer limit, Integer offset) throws SQLException { - return relationshipTypeService.findByEntityType(context, this.getType(context, entity), isLeft, limit, offset); + EntityType entityType = this.getType(context, entity); + if (entityType != null) { + return relationshipTypeService.findByEntityType(context, entityType, isLeft, limit, offset); + } else { + return Collections.emptyList(); + } } @Override diff --git a/dspace-api/src/main/java/org/dspace/content/EntityType.java b/dspace-api/src/main/java/org/dspace/content/EntityType.java index 20ab758a0b76..720e0c492ca7 100644 --- a/dspace-api/src/main/java/org/dspace/content/EntityType.java +++ b/dspace-api/src/main/java/org/dspace/content/EntityType.java @@ -8,14 +8,14 @@ package org.dspace.content; import java.util.Objects; -import javax.persistence.Column; -import javax.persistence.Entity; -import javax.persistence.GeneratedValue; -import javax.persistence.GenerationType; -import javax.persistence.Id; -import javax.persistence.SequenceGenerator; -import javax.persistence.Table; +import jakarta.persistence.Column; +import jakarta.persistence.Entity; +import jakarta.persistence.GeneratedValue; +import jakarta.persistence.GenerationType; +import jakarta.persistence.Id; +import jakarta.persistence.SequenceGenerator; +import jakarta.persistence.Table; import org.apache.commons.lang3.StringUtils; import org.apache.commons.lang3.builder.HashCodeBuilder; import org.dspace.core.ReloadableEntity; diff --git a/dspace-api/src/main/java/org/dspace/content/EntityTypeServiceImpl.java b/dspace-api/src/main/java/org/dspace/content/EntityTypeServiceImpl.java index 6666ad6f802c..babbb9efc7f6 100644 --- a/dspace-api/src/main/java/org/dspace/content/EntityTypeServiceImpl.java +++ b/dspace-api/src/main/java/org/dspace/content/EntityTypeServiceImpl.java @@ -158,7 +158,7 @@ public List getSubmitAuthorizedTypes(Context context) sQuery.setFacetMinCount(1); sQuery.setFacetLimit(Integer.MAX_VALUE); sQuery.setFacetSort(FacetParams.FACET_SORT_INDEX); - QueryResponse qResp = solrSearchCore.getSolr().query(sQuery); + QueryResponse qResp = solrSearchCore.getSolr().query(sQuery, solrSearchCore.REQUEST_METHOD); FacetField facetField = qResp.getFacetField("search.entitytype"); if (Objects.nonNull(facetField)) { for (Count c : facetField.getValues()) { diff --git a/dspace-api/src/main/java/org/dspace/content/FeedbackServiceImpl.java b/dspace-api/src/main/java/org/dspace/content/FeedbackServiceImpl.java index 7e34af132b0a..13f149f69f64 100644 --- a/dspace-api/src/main/java/org/dspace/content/FeedbackServiceImpl.java +++ b/dspace-api/src/main/java/org/dspace/content/FeedbackServiceImpl.java @@ -9,9 +9,9 @@ import java.io.IOException; import java.util.Date; import java.util.Objects; -import javax.mail.MessagingException; -import javax.servlet.http.HttpServletRequest; +import jakarta.mail.MessagingException; +import jakarta.servlet.http.HttpServletRequest; import org.apache.commons.lang.StringUtils; import org.dspace.content.service.FeedbackService; import org.dspace.core.Context; diff --git a/dspace-api/src/main/java/org/dspace/content/InstallItemServiceImpl.java b/dspace-api/src/main/java/org/dspace/content/InstallItemServiceImpl.java index 851807f4ae82..15e36334476a 100644 --- a/dspace-api/src/main/java/org/dspace/content/InstallItemServiceImpl.java +++ b/dspace-api/src/main/java/org/dspace/content/InstallItemServiceImpl.java @@ -29,6 +29,7 @@ import org.dspace.identifier.Identifier; import org.dspace.identifier.IdentifierException; import org.dspace.identifier.service.IdentifierService; +import org.dspace.services.ConfigurationService; import org.dspace.supervision.SupervisionOrder; import org.dspace.supervision.service.SupervisionOrderService; import org.springframework.beans.factory.annotation.Autowired; @@ -57,6 +58,9 @@ public class InstallItemServiceImpl implements InstallItemService { Logger log = LogManager.getLogger(InstallItemServiceImpl.class); + @Autowired + protected ConfigurationService configurationService; + protected InstallItemServiceImpl() { } @@ -281,14 +285,20 @@ public String getSubmittedByProvenanceMessage(Context context, Item item) throws // Create provenance description StringBuffer provmessage = new StringBuffer(); - if (item.getSubmitter() != null) { + //behavior to generate provenance message, if set true, personal data (e.g. email) of submitter will be hidden + //default value false, personal data of submitter will be shown in provenance message + String isProvenancePrivacyActiveProperty = + configurationService.getProperty("metadata.privacy.dc.description.provenance", "false"); + boolean isProvenancePrivacyActive = Boolean.parseBoolean(isProvenancePrivacyActiveProperty); + + if (item.getSubmitter() != null && !isProvenancePrivacyActive) { provmessage.append("Submitted by ").append(item.getSubmitter().getFullName()) - .append(" (").append(item.getSubmitter().getEmail()).append(") on ") - .append(now.toString()); + .append(" (").append(item.getSubmitter().getEmail()).append(") on ") + .append(now.toString()); } else { // else, null submitter - provmessage.append("Submitted by unknown (probably automated) on") - .append(now.toString()); + provmessage.append("Submitted by unknown (probably automated or submitter hidden) on ") + .append(now.toString()); } provmessage.append("\n"); diff --git a/dspace-api/src/main/java/org/dspace/content/Item.java b/dspace-api/src/main/java/org/dspace/content/Item.java index 547ff490b84b..5422528f84a3 100644 --- a/dspace-api/src/main/java/org/dspace/content/Item.java +++ b/dspace-api/src/main/java/org/dspace/content/Item.java @@ -14,27 +14,28 @@ import java.util.List; import java.util.Set; import java.util.UUID; -import javax.persistence.CascadeType; -import javax.persistence.Column; -import javax.persistence.Entity; -import javax.persistence.FetchType; -import javax.persistence.JoinColumn; -import javax.persistence.JoinTable; -import javax.persistence.ManyToMany; -import javax.persistence.ManyToOne; -import javax.persistence.OneToOne; -import javax.persistence.Table; -import javax.persistence.Temporal; -import javax.persistence.TemporalType; -import javax.persistence.Transient; +import jakarta.persistence.CascadeType; +import jakarta.persistence.Column; +import jakarta.persistence.Entity; +import jakarta.persistence.FetchType; +import jakarta.persistence.JoinColumn; +import jakarta.persistence.JoinTable; +import jakarta.persistence.ManyToMany; +import jakarta.persistence.ManyToOne; +import jakarta.persistence.OneToOne; +import jakarta.persistence.Table; +import jakarta.persistence.Temporal; +import jakarta.persistence.TemporalType; +import jakarta.persistence.Transient; import org.dspace.content.comparator.NameAscendingComparator; import org.dspace.content.factory.ContentServiceFactory; import org.dspace.content.service.ItemService; import org.dspace.core.Constants; import org.dspace.core.Context; +import org.dspace.core.HibernateProxyHelper; import org.dspace.eperson.EPerson; -import org.hibernate.proxy.HibernateProxyHelper; + /** * Class representing an item in DSpace. diff --git a/dspace-api/src/main/java/org/dspace/content/ItemServiceImpl.java b/dspace-api/src/main/java/org/dspace/content/ItemServiceImpl.java index 8e63bf7b71a4..d2da5b2bcd17 100644 --- a/dspace-api/src/main/java/org/dspace/content/ItemServiceImpl.java +++ b/dspace-api/src/main/java/org/dspace/content/ItemServiceImpl.java @@ -46,6 +46,7 @@ import org.dspace.authorize.ResourcePolicy; import org.dspace.authorize.service.AuthorizeService; import org.dspace.authorize.service.ResourcePolicyService; +import org.dspace.content.authority.Choices; import org.dspace.content.dao.ItemDAO; import org.dspace.content.factory.ContentServiceFactory; import org.dspace.content.service.BitstreamFormatService; @@ -59,7 +60,9 @@ import org.dspace.content.service.MetadataSchemaService; import org.dspace.content.service.RelationshipService; import org.dspace.content.service.WorkspaceItemService; +import org.dspace.content.template.TemplateItemValueService; import org.dspace.content.virtual.VirtualMetadataPopulator; +import org.dspace.content.vo.MetadataValueVO; import org.dspace.contentreport.QueryPredicate; import org.dspace.core.Constants; import org.dspace.core.Context; @@ -120,7 +123,7 @@ public class ItemServiceImpl extends DSpaceObjectServiceImpl implements It /** * log4j category */ - private static final Logger log = org.apache.logging.log4j.LogManager.getLogger(Item.class); + private static final Logger log = org.apache.logging.log4j.LogManager.getLogger(); @Autowired(required = true) protected ItemDAO itemDAO; @@ -162,6 +165,8 @@ public class ItemServiceImpl extends DSpaceObjectServiceImpl implements It protected WorkspaceItemService workspaceItemService; @Autowired(required = true) protected WorkflowItemService workflowItemService; + @Autowired + private TemplateItemValueService templateItemValueService; @Autowired(required = true) protected RelationshipService relationshipService; @@ -407,6 +412,62 @@ public Item createTemplateItem(Context context, Collection collection) throws SQ return collection.getTemplateItem(); } + @Override + public void populateWithTemplateItemMetadata(Context context, Collection collection, boolean template, Item item) + throws SQLException { + + Item templateItem = collection.getTemplateItem(); + + Optional colEntityType = getDSpaceEntityType(collection); + Optional templateItemEntityType = getDSpaceEntityType(templateItem); + + if (template && colEntityType.isPresent() && templateItemEntityType.isPresent() && + !StringUtils.equals(colEntityType.get().getValue(), templateItemEntityType.get().getValue())) { + throw new IllegalStateException("The template item has entity type : (" + + templateItemEntityType.get().getValue() + ") different than collection entity type : " + + colEntityType.get().getValue()); + } + + if (template && colEntityType.isPresent() && templateItemEntityType.isEmpty()) { + MetadataValue original = colEntityType.get(); + MetadataField metadataField = original.getMetadataField(); + MetadataSchema metadataSchema = metadataField.getMetadataSchema(); + // NOTE: dspace.entity.type = does not make sense + // the collection entity type is by default blank when a collection is first created + if (StringUtils.isNotBlank(original.getValue())) { + addMetadata(context, item, metadataSchema.getName(), metadataField.getElement(), + metadataField.getQualifier(), original.getLanguage(), original.getValue()); + } + } + + if (template && (templateItem != null)) { + List md = getMetadata(templateItem, Item.ANY, Item.ANY, Item.ANY, Item.ANY); + + for (MetadataValue aMd : md) { + MetadataField metadataField = aMd.getMetadataField(); + MetadataSchema metadataSchema = metadataField.getMetadataSchema(); + List metadataValueFromTemplateList = templateItemValueService.value(context, item, + templateItem, aMd); + + for (MetadataValueVO metadataValueFromTemplate : metadataValueFromTemplateList) { + addMetadata(context, item, metadataSchema.getName(), metadataField.getElement(), + metadataField.getQualifier(), aMd.getLanguage(), + metadataValueFromTemplate.getValue(), metadataValueFromTemplate.getAuthority(), + metadataValueFromTemplate.getConfidence()); + } + } + } + } + + private Optional getDSpaceEntityType(DSpaceObject dSpaceObject) { + return Objects.nonNull(dSpaceObject) ? dSpaceObject.getMetadata() + .stream() + .filter(x -> x.getMetadataField().toString('.') + .equalsIgnoreCase("dspace.entity.type")) + .findFirst() + : Optional.empty(); + } + @Override public Iterator findAll(Context context) throws SQLException { return itemDAO.findAll(context, true); @@ -1752,7 +1813,7 @@ public Iterator findByMetadataField(Context context, public List findByMetadataQuery(Context context, List queryPredicates, List collectionUuids, long offset, int limit) throws SQLException { - return itemDAO.findByMetadataQuery(context, queryPredicates, collectionUuids, "text_value ~ ?", + return itemDAO.findByMetadataQuery(context, queryPredicates, collectionUuids, "value ~ ?", offset, limit); } @@ -1761,7 +1822,7 @@ public List findByMetadataQuery(Context context, List quer public long countForMetadataQuery(Context context, List queryPredicates, List collectionUuids) throws SQLException { - return itemDAO.countForMetadataQuery(context, queryPredicates, collectionUuids, "text_value ~ ?"); + return itemDAO.countForMetadataQuery(context, queryPredicates, collectionUuids, "value ~ ?"); } @Override @@ -1910,13 +1971,13 @@ public Iterator findByIds(Context context, List ids) throws SQLExc @Override public int countItems(Context context, Collection collection) throws SQLException { - return itemDAO.countItems(context, collection, true, false); + return itemDAO.countItems(context, collection, true, false, true); } @Override public int countAllItems(Context context, Collection collection) throws SQLException { - return itemDAO.countItems(context, collection, true, false) + itemDAO.countItems(context, collection, - false, true); + return itemDAO.countItems(context, collection, true, false, true) + itemDAO.countItems(context, collection, + false, true, true); } @Override @@ -1925,7 +1986,7 @@ public int countItems(Context context, Community community) throws SQLException List collections = communityService.getAllCollections(context, community); // Now, lets count unique items across that list of collections - return itemDAO.countItems(context, collections, true, false); + return itemDAO.countItems(context, collections, true, false, true); } @Override @@ -1934,8 +1995,17 @@ public int countAllItems(Context context, Community community) throws SQLExcepti List collections = communityService.getAllCollections(context, community); // Now, lets count unique items across that list of collections - return itemDAO.countItems(context, collections, true, false) + itemDAO.countItems(context, collections, - false, true); + return itemDAO.countItems(context, collections, true, false, true) + itemDAO.countItems(context, collections, + false, false, true); + } + + @Override + protected void getAuthoritiesAndConfidences(String fieldKey, int dsoType, Collection collection, + List values, List authorities, + List confidences, int i) { + Choices c = choiceAuthorityService.getBestMatch(fieldKey, values.get(i), dsoType, collection, null); + authorities.add(c.values.length > 0 && c.values[0] != null ? c.values[0].authority : null); + confidences.add(c.confidence); } @Override @@ -1970,19 +2040,19 @@ public int countTotal(Context context) throws SQLException { @Override public int countNotArchivedItems(Context context) throws SQLException { // return count of items not in archive and also not withdrawn - return itemDAO.countItems(context, false, false); + return itemDAO.countItems(context, false, false, true); } @Override public int countArchivedItems(Context context) throws SQLException { // return count of items in archive and also not withdrawn - return itemDAO.countItems(context, true, false); + return itemDAO.countItems(context, true, false, true); } @Override public int countWithdrawnItems(Context context) throws SQLException { // return count of items that are not in archive and withdrawn - return itemDAO.countItems(context, false, true); + return itemDAO.countItems(context, false, true, true ); } @Override @@ -2106,6 +2176,8 @@ public void setEntityType(Context context, Item item, String entityType) { */ @Override protected void moveSingleMetadataValue(Context context, Item dso, int place, MetadataValue rr) { + // If this is a (virtual) metadata value representing a relationship, + // then we must also update the corresponding Relationship with the new place if (rr instanceof RelationshipMetadataValue) { try { //Retrieve the applicable relationship @@ -2121,10 +2193,10 @@ protected void moveSingleMetadataValue(Context context, Item dso, int place, Met //should not occur, otherwise metadata can't be updated either log.error("An error occurred while moving " + rr.getAuthority() + " for item " + dso.getID(), e); } - } else { - //just move the metadata - rr.setPlace(place); } + + // Update the MetadataValue object with the new place setting + rr.setPlace(place); } @Override diff --git a/dspace-api/src/main/java/org/dspace/content/MetadataField.java b/dspace-api/src/main/java/org/dspace/content/MetadataField.java index 8b767011999e..cbe90a374432 100644 --- a/dspace-api/src/main/java/org/dspace/content/MetadataField.java +++ b/dspace-api/src/main/java/org/dspace/content/MetadataField.java @@ -7,23 +7,22 @@ */ package org.dspace.content; -import javax.persistence.Cacheable; -import javax.persistence.Column; -import javax.persistence.Entity; -import javax.persistence.FetchType; -import javax.persistence.GeneratedValue; -import javax.persistence.GenerationType; -import javax.persistence.Id; -import javax.persistence.JoinColumn; -import javax.persistence.ManyToOne; -import javax.persistence.SequenceGenerator; -import javax.persistence.Table; - +import jakarta.persistence.Cacheable; +import jakarta.persistence.Column; +import jakarta.persistence.Entity; +import jakarta.persistence.FetchType; +import jakarta.persistence.GeneratedValue; +import jakarta.persistence.GenerationType; +import jakarta.persistence.Id; +import jakarta.persistence.JoinColumn; +import jakarta.persistence.ManyToOne; +import jakarta.persistence.SequenceGenerator; +import jakarta.persistence.Table; import org.dspace.core.Context; +import org.dspace.core.HibernateProxyHelper; import org.dspace.core.ReloadableEntity; import org.hibernate.annotations.Cache; import org.hibernate.annotations.CacheConcurrencyStrategy; -import org.hibernate.proxy.HibernateProxyHelper; /** @@ -58,8 +57,6 @@ public class MetadataField implements ReloadableEntity { @Column(name = "qualifier", length = 64) private String qualifier = null; - // @Column(name = "scope_note") -// @Lob @Column(name = "scope_note", columnDefinition = "text") private String scopeNote; diff --git a/dspace-api/src/main/java/org/dspace/content/MetadataFieldName.java b/dspace-api/src/main/java/org/dspace/content/MetadataFieldName.java index 702d7dcdbaf5..66d67b3c1f95 100644 --- a/dspace-api/src/main/java/org/dspace/content/MetadataFieldName.java +++ b/dspace-api/src/main/java/org/dspace/content/MetadataFieldName.java @@ -9,7 +9,8 @@ import java.util.Arrays; import java.util.Objects; -import javax.annotation.Nonnull; + +import jakarta.annotation.Nonnull; /** * Simple immutable holder for the name of a metadata field. diff --git a/dspace-api/src/main/java/org/dspace/content/MetadataSchema.java b/dspace-api/src/main/java/org/dspace/content/MetadataSchema.java index f60e5e1604cf..b9a4665e6672 100644 --- a/dspace-api/src/main/java/org/dspace/content/MetadataSchema.java +++ b/dspace-api/src/main/java/org/dspace/content/MetadataSchema.java @@ -7,19 +7,18 @@ */ package org.dspace.content; -import javax.persistence.Cacheable; -import javax.persistence.Column; -import javax.persistence.Entity; -import javax.persistence.GeneratedValue; -import javax.persistence.GenerationType; -import javax.persistence.Id; -import javax.persistence.SequenceGenerator; -import javax.persistence.Table; - +import jakarta.persistence.Cacheable; +import jakarta.persistence.Column; +import jakarta.persistence.Entity; +import jakarta.persistence.GeneratedValue; +import jakarta.persistence.GenerationType; +import jakarta.persistence.Id; +import jakarta.persistence.SequenceGenerator; +import jakarta.persistence.Table; import org.dspace.core.Context; +import org.dspace.core.HibernateProxyHelper; import org.dspace.core.ReloadableEntity; import org.hibernate.annotations.CacheConcurrencyStrategy; -import org.hibernate.proxy.HibernateProxyHelper; /** * Class representing a schema in DSpace. diff --git a/dspace-api/src/main/java/org/dspace/content/MetadataValue.java b/dspace-api/src/main/java/org/dspace/content/MetadataValue.java index 923b5575fa46..4c060af0a886 100644 --- a/dspace-api/src/main/java/org/dspace/content/MetadataValue.java +++ b/dspace-api/src/main/java/org/dspace/content/MetadataValue.java @@ -7,25 +7,23 @@ */ package org.dspace.content; -import javax.annotation.Nullable; -import javax.persistence.CascadeType; -import javax.persistence.Column; -import javax.persistence.Entity; -import javax.persistence.FetchType; -import javax.persistence.GeneratedValue; -import javax.persistence.GenerationType; -import javax.persistence.Id; -import javax.persistence.JoinColumn; -import javax.persistence.Lob; -import javax.persistence.ManyToOne; -import javax.persistence.SequenceGenerator; -import javax.persistence.Table; -import javax.persistence.Transient; - +import jakarta.annotation.Nullable; +import jakarta.persistence.CascadeType; +import jakarta.persistence.Column; +import jakarta.persistence.Entity; +import jakarta.persistence.FetchType; +import jakarta.persistence.GeneratedValue; +import jakarta.persistence.GenerationType; +import jakarta.persistence.Id; +import jakarta.persistence.JoinColumn; +import jakarta.persistence.ManyToOne; +import jakarta.persistence.SequenceGenerator; +import jakarta.persistence.Table; +import jakarta.persistence.Transient; import org.dspace.core.Context; +import org.dspace.core.HibernateProxyHelper; import org.dspace.core.ReloadableEntity; -import org.hibernate.annotations.Type; -import org.hibernate.proxy.HibernateProxyHelper; +import org.hibernate.Length; /** * Database access class representing a Dublin Core metadata value. @@ -60,9 +58,7 @@ public class MetadataValue implements ReloadableEntity { /** * The value of the field */ - @Lob - @Type(type = "org.hibernate.type.TextType") - @Column(name = "text_value") + @Column(name = "text_value", length = Length.LONG32) private String value; /** diff --git a/dspace-api/src/main/java/org/dspace/content/PredefinedUUIDGenerator.java b/dspace-api/src/main/java/org/dspace/content/PredefinedUUIDGenerator.java index aa4a8ea5429c..15d302ec6152 100644 --- a/dspace-api/src/main/java/org/dspace/content/PredefinedUUIDGenerator.java +++ b/dspace-api/src/main/java/org/dspace/content/PredefinedUUIDGenerator.java @@ -7,7 +7,6 @@ */ package org.dspace.content; -import java.io.Serializable; import java.util.UUID; import org.hibernate.engine.spi.SharedSessionContractImplementor; @@ -21,7 +20,7 @@ public class PredefinedUUIDGenerator extends UUIDGenerator { @Override - public Serializable generate(SharedSessionContractImplementor session, Object object) { + public Object generate(SharedSessionContractImplementor session, Object object) { if (object instanceof DSpaceObject) { UUID uuid = ((DSpaceObject) object).getPredefinedUUID(); if (uuid != null) { diff --git a/dspace-api/src/main/java/org/dspace/content/QAEventProcessed.java b/dspace-api/src/main/java/org/dspace/content/QAEventProcessed.java index 3631a2ff68c6..fcca5b45703a 100644 --- a/dspace-api/src/main/java/org/dspace/content/QAEventProcessed.java +++ b/dspace-api/src/main/java/org/dspace/content/QAEventProcessed.java @@ -9,15 +9,15 @@ import java.io.Serializable; import java.util.Date; -import javax.persistence.Column; -import javax.persistence.Entity; -import javax.persistence.Id; -import javax.persistence.JoinColumn; -import javax.persistence.ManyToOne; -import javax.persistence.Table; -import javax.persistence.Temporal; -import javax.persistence.TemporalType; +import jakarta.persistence.Column; +import jakarta.persistence.Entity; +import jakarta.persistence.Id; +import jakarta.persistence.JoinColumn; +import jakarta.persistence.ManyToOne; +import jakarta.persistence.Table; +import jakarta.persistence.Temporal; +import jakarta.persistence.TemporalType; import org.dspace.eperson.EPerson; /** diff --git a/dspace-api/src/main/java/org/dspace/content/Relationship.java b/dspace-api/src/main/java/org/dspace/content/Relationship.java index 7c912923a436..0cf9a83d9ddf 100644 --- a/dspace-api/src/main/java/org/dspace/content/Relationship.java +++ b/dspace-api/src/main/java/org/dspace/content/Relationship.java @@ -7,19 +7,20 @@ */ package org.dspace.content; -import javax.persistence.Column; -import javax.persistence.Entity; -import javax.persistence.FetchType; -import javax.persistence.GeneratedValue; -import javax.persistence.GenerationType; -import javax.persistence.Id; -import javax.persistence.JoinColumn; -import javax.persistence.ManyToOne; -import javax.persistence.SequenceGenerator; -import javax.persistence.Table; - +import jakarta.persistence.Column; +import jakarta.persistence.Entity; +import jakarta.persistence.FetchType; +import jakarta.persistence.GeneratedValue; +import jakarta.persistence.GenerationType; +import jakarta.persistence.Id; +import jakarta.persistence.JoinColumn; +import jakarta.persistence.ManyToOne; +import jakarta.persistence.SequenceGenerator; +import jakarta.persistence.Table; import org.dspace.core.Context; import org.dspace.core.ReloadableEntity; +import org.hibernate.annotations.JdbcTypeCode; +import org.hibernate.type.SqlTypes; /** * This class represents a relationship @@ -96,6 +97,7 @@ public class Relationship implements ReloadableEntity { * This column affects what version of an item appears on search pages or the relationship listings of other items. */ @Column(name = "latest_version_status") + @JdbcTypeCode(SqlTypes.INTEGER) private LatestVersionStatus latestVersionStatus = LatestVersionStatus.BOTH; /** diff --git a/dspace-api/src/main/java/org/dspace/content/RelationshipType.java b/dspace-api/src/main/java/org/dspace/content/RelationshipType.java index c4dad42b2316..ca16071b6364 100644 --- a/dspace-api/src/main/java/org/dspace/content/RelationshipType.java +++ b/dspace-api/src/main/java/org/dspace/content/RelationshipType.java @@ -7,20 +7,21 @@ */ package org.dspace.content; -import javax.persistence.CascadeType; -import javax.persistence.Column; -import javax.persistence.Entity; -import javax.persistence.FetchType; -import javax.persistence.GeneratedValue; -import javax.persistence.GenerationType; -import javax.persistence.Id; -import javax.persistence.JoinColumn; -import javax.persistence.ManyToOne; -import javax.persistence.SequenceGenerator; -import javax.persistence.Table; - +import jakarta.persistence.CascadeType; +import jakarta.persistence.Column; +import jakarta.persistence.Entity; +import jakarta.persistence.FetchType; +import jakarta.persistence.GeneratedValue; +import jakarta.persistence.GenerationType; +import jakarta.persistence.Id; +import jakarta.persistence.JoinColumn; +import jakarta.persistence.ManyToOne; +import jakarta.persistence.SequenceGenerator; +import jakarta.persistence.Table; import org.dspace.core.Context; import org.dspace.core.ReloadableEntity; +import org.hibernate.annotations.JdbcTypeCode; +import org.hibernate.type.SqlTypes; /** * Class representing a RelationshipType @@ -118,6 +119,7 @@ public class RelationshipType implements ReloadableEntity { * The value indicating whether relationships of this type should be ignored on the right/left/neither. */ @Column(name = "tilted") + @JdbcTypeCode(SqlTypes.INTEGER) private Tilted tilted; /** diff --git a/dspace-api/src/main/java/org/dspace/content/Site.java b/dspace-api/src/main/java/org/dspace/content/Site.java index 0bdab6ffe564..904c1d3e6b86 100644 --- a/dspace-api/src/main/java/org/dspace/content/Site.java +++ b/dspace-api/src/main/java/org/dspace/content/Site.java @@ -7,28 +7,23 @@ */ package org.dspace.content; -import javax.persistence.Cacheable; -import javax.persistence.Entity; -import javax.persistence.Table; -import javax.persistence.Transient; - +import jakarta.persistence.Entity; +import jakarta.persistence.Table; +import jakarta.persistence.Transient; import org.dspace.content.factory.ContentServiceFactory; import org.dspace.content.service.SiteService; import org.dspace.core.Constants; import org.dspace.core.Context; import org.dspace.services.ConfigurationService; import org.dspace.services.factory.DSpaceServicesFactory; -import org.hibernate.annotations.CacheConcurrencyStrategy; /** * Represents the root of the DSpace Archive. * By default, the handle suffix "0" represents the Site, e.g. "1721.1/0" */ @Entity -@Cacheable -@org.hibernate.annotations.Cache(usage = CacheConcurrencyStrategy.NONSTRICT_READ_WRITE) @Table(name = "site") -public class Site extends DSpaceObject { +public class Site extends CacheableDSpaceObject { @Transient private transient SiteService siteService; diff --git a/dspace-api/src/main/java/org/dspace/content/WorkspaceItem.java b/dspace-api/src/main/java/org/dspace/content/WorkspaceItem.java index 37e5bb056ff4..ac3b08f8d3f3 100644 --- a/dspace-api/src/main/java/org/dspace/content/WorkspaceItem.java +++ b/dspace-api/src/main/java/org/dspace/content/WorkspaceItem.java @@ -8,23 +8,23 @@ package org.dspace.content; import java.io.Serializable; -import javax.persistence.Column; -import javax.persistence.Entity; -import javax.persistence.FetchType; -import javax.persistence.GeneratedValue; -import javax.persistence.GenerationType; -import javax.persistence.Id; -import javax.persistence.JoinColumn; -import javax.persistence.ManyToOne; -import javax.persistence.OneToOne; -import javax.persistence.SequenceGenerator; -import javax.persistence.Table; +import jakarta.persistence.Column; +import jakarta.persistence.Entity; +import jakarta.persistence.FetchType; +import jakarta.persistence.GeneratedValue; +import jakarta.persistence.GenerationType; +import jakarta.persistence.Id; +import jakarta.persistence.JoinColumn; +import jakarta.persistence.ManyToOne; +import jakarta.persistence.OneToOne; +import jakarta.persistence.SequenceGenerator; +import jakarta.persistence.Table; import org.apache.commons.lang3.builder.HashCodeBuilder; import org.dspace.core.Context; +import org.dspace.core.HibernateProxyHelper; import org.dspace.eperson.EPerson; import org.dspace.workflow.WorkflowItem; -import org.hibernate.proxy.HibernateProxyHelper; /** * Class representing an item in the process of being submitted by a user diff --git a/dspace-api/src/main/java/org/dspace/content/WorkspaceItemServiceImpl.java b/dspace-api/src/main/java/org/dspace/content/WorkspaceItemServiceImpl.java index f1a8e546ebb1..5e4326cf72a0 100644 --- a/dspace-api/src/main/java/org/dspace/content/WorkspaceItemServiceImpl.java +++ b/dspace-api/src/main/java/org/dspace/content/WorkspaceItemServiceImpl.java @@ -12,11 +12,8 @@ import java.util.ArrayList; import java.util.List; import java.util.Map; -import java.util.Objects; -import java.util.Optional; import java.util.UUID; -import org.apache.commons.lang3.StringUtils; import org.apache.logging.log4j.Logger; import org.dspace.app.util.DCInputsReaderException; import org.dspace.app.util.Util; @@ -31,8 +28,6 @@ import org.dspace.content.service.MetadataFieldService; import org.dspace.content.service.MetadataValueService; import org.dspace.content.service.WorkspaceItemService; -import org.dspace.content.template.TemplateItemValueService; -import org.dspace.content.vo.MetadataValueVO; import org.dspace.core.Constants; import org.dspace.core.Context; import org.dspace.core.LogHelper; @@ -77,8 +72,7 @@ public class WorkspaceItemServiceImpl implements WorkspaceItemService { private MetadataFieldService metadataFieldService; @Autowired private MetadataValueService metadataValueService; - @Autowired - private TemplateItemValueService templateItemValueService; + @Autowired(required = true) protected DOIService doiService; @@ -109,11 +103,18 @@ public WorkspaceItem find(Context context, int id) throws SQLException { @Override public WorkspaceItem create(Context context, Collection collection, boolean template) throws AuthorizeException, SQLException { - return create(context, collection, null, template); + return create(context, collection, null, template, false); + } + + @Override + public WorkspaceItem create(Context context, Collection collection, boolean template, boolean isNewVersion) + throws AuthorizeException, SQLException { + return create(context, collection, null, template, isNewVersion); } @Override - public WorkspaceItem create(Context context, Collection collection, UUID uuid, boolean template) + public WorkspaceItem create(Context context, Collection collection, UUID uuid, boolean template, + boolean isNewVersion) throws AuthorizeException, SQLException { // Check the user has permission to ADD to the collection authorizeService.authorizeAction(context, collection, Constants.ADD); @@ -142,57 +143,16 @@ public WorkspaceItem create(Context context, Collection collection, UUID uuid, b } // Copy template if appropriate - Item templateItem = collection.getTemplateItem(); - - Optional colEntityType = getDSpaceEntityType(collection); - Optional templateItemEntityType = getDSpaceEntityType(templateItem); - - if (colEntityType.isPresent() && templateItemEntityType.isPresent() && - !StringUtils.equals(colEntityType.get().getValue(), templateItemEntityType.get().getValue())) { - throw new IllegalStateException("The template item has entity type : (" + - templateItemEntityType.get().getValue() + ") different than collection entity type : " + - colEntityType.get().getValue()); - } - - if (colEntityType.isPresent() && templateItemEntityType.isEmpty()) { - MetadataValue original = colEntityType.get(); - MetadataField metadataField = original.getMetadataField(); - MetadataSchema metadataSchema = metadataField.getMetadataSchema(); - // NOTE: dspace.entity.type = does not make sense - // the collection entity type is by default blank when a collection is first created - if (StringUtils.isNotBlank(original.getValue())) { - itemService.addMetadata(context, item, metadataSchema.getName(), metadataField.getElement(), - metadataField.getQualifier(), original.getLanguage(), original.getValue()); - } - } - - if (template && (templateItem != null)) { - List templateMetadataValues = itemService.getMetadata(templateItem, Item.ANY, Item.ANY, - Item.ANY, Item.ANY); - - for (MetadataValue templateMetadataValue : templateMetadataValues) { - - MetadataField metadataField = templateMetadataValue.getMetadataField(); - MetadataSchema metadataSchema = metadataField.getMetadataSchema(); - - List metadataValueFromTemplateList = templateItemValueService.value(context, item, - templateItem, templateMetadataValue); - - for (MetadataValueVO metadataValueFromTemplate : metadataValueFromTemplateList) { - itemService.addMetadata(context, item, metadataSchema.getName(), metadataField.getElement(), - metadataField.getQualifier(), templateMetadataValue.getLanguage(), - metadataValueFromTemplate.getValue(), metadataValueFromTemplate.getAuthority(), - metadataValueFromTemplate.getConfidence()); - } - } - } + itemService.populateWithTemplateItemMetadata(context, collection, template, item); itemService.update(context, item); // If configured, register identifiers (eg handle, DOI) now. This is typically used with the Show Identifiers // submission step which previews minted handles and DOIs during the submission process. Default: false + // Additional check needed: if we are creating a new version of an existing item we skip the identifier + // generation here, as this will be performed when the new version is created in VersioningServiceImpl if (DSpaceServicesFactory.getInstance().getConfigurationService() - .getBooleanProperty("identifiers.submission.register", false)) { + .getBooleanProperty("identifiers.submission.register", false) && !isNewVersion) { try { // Get map of filters to use for identifier types, while the item is in progress Map, Filter> filters = FilterUtils.getIdentifierFilters(true); @@ -221,15 +181,6 @@ public WorkspaceItem create(Context context, Collection collection, UUID uuid, b return workspaceItem; } - private Optional getDSpaceEntityType(DSpaceObject dSpaceObject) { - return Objects.nonNull(dSpaceObject) ? dSpaceObject.getMetadata() - .stream() - .filter(x -> x.getMetadataField().toString('.') - .equalsIgnoreCase("dspace.entity.type")) - .findFirst() - : Optional.empty(); - } - @Override public WorkspaceItem create(Context c, WorkflowItem workflowItem) throws SQLException, AuthorizeException { WorkspaceItem workspaceItem = workspaceItemDAO.create(c, new WorkspaceItem()); diff --git a/dspace-api/src/main/java/org/dspace/content/authority/DSpaceControlledVocabulary.java b/dspace-api/src/main/java/org/dspace/content/authority/DSpaceControlledVocabulary.java index 65d0f25c3062..24a8f2ec2375 100644 --- a/dspace-api/src/main/java/org/dspace/content/authority/DSpaceControlledVocabulary.java +++ b/dspace-api/src/main/java/org/dspace/content/authority/DSpaceControlledVocabulary.java @@ -113,8 +113,9 @@ public boolean accept(File dir, String name) { } } String vocabulariesPath = DSpaceServicesFactory.getInstance().getConfigurationService() - .getProperty( - "dspace.dir") + "/config/controlled-vocabularies/"; + .getProperty("dspace.dir") + + File.separator + "config" + + File.separator + "controlled-vocabularies"; String[] xmlFiles = (new File(vocabulariesPath)).list(new xmlFilter()); List names = new ArrayList(); for (String filename : xmlFiles) { @@ -252,6 +253,7 @@ public Choice getChoice(String authKey, String locale) { @Override public boolean isHierarchical() { + init(); return true; } diff --git a/dspace-api/src/main/java/org/dspace/content/crosswalk/CreativeCommonsRDFStreamDisseminationCrosswalk.java b/dspace-api/src/main/java/org/dspace/content/crosswalk/CreativeCommonsRDFStreamDisseminationCrosswalk.java index 9042a3a7f523..0528c0c20570 100644 --- a/dspace-api/src/main/java/org/dspace/content/crosswalk/CreativeCommonsRDFStreamDisseminationCrosswalk.java +++ b/dspace-api/src/main/java/org/dspace/content/crosswalk/CreativeCommonsRDFStreamDisseminationCrosswalk.java @@ -59,7 +59,6 @@ public void disseminate(Context context, DSpaceObject dso, OutputStream out) Bitstream cc = creativeCommonsService.getLicenseRdfBitstream((Item) dso); if (cc != null) { Utils.copy(bitstreamService.retrieve(context, cc), out); - out.close(); } } } diff --git a/dspace-api/src/main/java/org/dspace/content/crosswalk/CreativeCommonsTextStreamDisseminationCrosswalk.java b/dspace-api/src/main/java/org/dspace/content/crosswalk/CreativeCommonsTextStreamDisseminationCrosswalk.java index edb9d60a623e..cd26b4d19cee 100644 --- a/dspace-api/src/main/java/org/dspace/content/crosswalk/CreativeCommonsTextStreamDisseminationCrosswalk.java +++ b/dspace-api/src/main/java/org/dspace/content/crosswalk/CreativeCommonsTextStreamDisseminationCrosswalk.java @@ -65,7 +65,6 @@ public void disseminate(Context context, DSpaceObject dso, OutputStream out) Bitstream cc = creativeCommonsService.getLicenseTextBitstream((Item) dso); if (cc != null) { Utils.copy(bitstreamService.retrieve(context, cc), out); - out.close(); } } } diff --git a/dspace-api/src/main/java/org/dspace/content/crosswalk/LicenseStreamDisseminationCrosswalk.java b/dspace-api/src/main/java/org/dspace/content/crosswalk/LicenseStreamDisseminationCrosswalk.java index 75b884613db9..46858747870d 100644 --- a/dspace-api/src/main/java/org/dspace/content/crosswalk/LicenseStreamDisseminationCrosswalk.java +++ b/dspace-api/src/main/java/org/dspace/content/crosswalk/LicenseStreamDisseminationCrosswalk.java @@ -57,7 +57,6 @@ public void disseminate(Context context, DSpaceObject dso, OutputStream out) if (licenseBs != null) { Utils.copy(bitstreamService.retrieve(context, licenseBs), out); - out.close(); } } } diff --git a/dspace-api/src/main/java/org/dspace/content/crosswalk/METSRightsCrosswalk.java b/dspace-api/src/main/java/org/dspace/content/crosswalk/METSRightsCrosswalk.java index 7f6622841ba7..bd424598771c 100644 --- a/dspace-api/src/main/java/org/dspace/content/crosswalk/METSRightsCrosswalk.java +++ b/dspace-api/src/main/java/org/dspace/content/crosswalk/METSRightsCrosswalk.java @@ -432,31 +432,7 @@ public void ingest(Context context, DSpaceObject dso, List ml, boolean //get what class of context this is String contextClass = element.getAttributeValue("CONTEXTCLASS"); - ResourcePolicy rp = resourcePolicyService.create(context); - SimpleDateFormat sdf = new SimpleDateFormat("yyyy-MM-dd"); - - // get reference to the element - // Note: we are assuming here that there will only ever be ONE - // element. Currently there are no known use cases for multiple. - Element permsElement = element.getChild("Permissions", METSRights_NS); - if (permsElement == null) { - log.error("No element was found. Skipping this element."); - continue; - } - - if (element.getAttributeValue("rpName") != null) { - rp.setRpName(element.getAttributeValue("rpName")); - } - try { - if (element.getAttributeValue("start-date") != null) { - rp.setStartDate(sdf.parse(element.getAttributeValue("start-date"))); - } - if (element.getAttributeValue("end-date") != null) { - rp.setEndDate(sdf.parse(element.getAttributeValue("end-date"))); - } - } catch (ParseException ex) { - log.error("Failed to parse embargo date. The date needs to be in the format 'yyyy-MM-dd'.", ex); - } + ResourcePolicy rp = null; //Check if this permission pertains to Anonymous users if (ANONYMOUS_CONTEXTCLASS.equals(contextClass)) { @@ -464,22 +440,23 @@ public void ingest(Context context, DSpaceObject dso, List ml, boolean Group anonGroup = groupService.findByName(context, Group.ANONYMOUS); if (anonGroup == null) { throw new CrosswalkInternalException( - "The DSpace database has not been properly initialized. The Anonymous Group is " + - "missing from the database."); + "The DSpace database has not been properly initialized. The Anonymous Group is " + + "missing from the database."); } - rp.setGroup(anonGroup); + rp = resourcePolicyService.create(context, null, anonGroup); } else if (ADMIN_CONTEXTCLASS.equals(contextClass)) { // else if this permission declaration pertains to Administrators // get DSpace Administrator group Group adminGroup = groupService.findByName(context, Group.ADMIN); if (adminGroup == null) { throw new CrosswalkInternalException( - "The DSpace database has not been properly initialized. The Administrator Group is " + - "missing from the database."); + "The DSpace database has not been properly initialized. " + + "The Administrator Group is " + + "missing from the database."); } - rp.setGroup(adminGroup); + rp = resourcePolicyService.create(context, null, adminGroup); } else if (GROUP_CONTEXTCLASS.equals(contextClass)) { // else if this permission pertains to another DSpace group try { @@ -498,18 +475,17 @@ public void ingest(Context context, DSpaceObject dso, List ml, boolean //if not found, throw an error -- user should restore group from the SITE AIP if (group == null) { throw new CrosswalkInternalException("Cannot restore Group permissions on object (" - + "type=" + Constants.typeText[dso - .getType()] + ", " - + "handle=" + dso.getHandle() + ", " - + "ID=" + dso.getID() - + "). The Group named '" + groupName + "' is" + - " missing from DSpace. " - + "Please restore this group using the SITE " + - "AIP, or recreate it."); + + "type=" + Constants.typeText[dso.getType()] + ", " + + "handle=" + dso.getHandle() + ", " + + "ID=" + dso.getID() + + "). The Group named '" + groupName + "' is" + + " missing from DSpace. " + + "Please restore this group using the SITE " + + "AIP, or recreate it."); } //assign group to policy - rp.setGroup(group); + rp = resourcePolicyService.create(context, null, group); } catch (PackageException pe) { //A PackageException will only be thrown if translateDefaultGroupName() fails //We'll just wrap it as a CrosswalkException and throw it upwards @@ -535,25 +511,52 @@ public void ingest(Context context, DSpaceObject dso, List ml, boolean //if not found, throw an error -- user should restore person from the SITE AIP if (person == null) { throw new CrosswalkInternalException("Cannot restore Person permissions on object (" - + "type=" + Constants.typeText[dso - .getType()] + ", " - + "handle=" + dso.getHandle() + ", " - + "ID=" + dso.getID() - + "). The Person with email/netid '" + - personEmail + "' is missing from DSpace. " - + "Please restore this Person object using the " + - "SITE AIP, or recreate it."); + + "type=" + Constants.typeText[dso.getType()] + ", " + + "handle=" + dso.getHandle() + ", " + + "ID=" + dso.getID() + + "). The Person with email/netid '" + + personEmail + "' is missing from DSpace. " + + "Please restore this Person object using the " + + "SITE AIP, or recreate it."); } - //assign person to the policy - rp.setEPerson(person); + //create rp with the person + rp = resourcePolicyService.create(context, person, null); } else { log.error("Unrecognized CONTEXTCLASS: " + contextClass); } + if (rp != null) { + SimpleDateFormat sdf = new SimpleDateFormat("yyyy-MM-dd"); + + // get reference to the element + // Note: we are assuming here that there will only ever be ONE + // element. Currently there are no known use cases for multiple. + Element permsElement = element.getChild("Permissions", METSRights_NS); + if (permsElement == null) { + log.error("No element was found. Skipping this element."); + continue; + } + + if (element.getAttributeValue("rpName") != null) { + rp.setRpName(element.getAttributeValue("rpName")); + } + try { + if (element.getAttributeValue("start-date") != null) { + rp.setStartDate(sdf.parse(element.getAttributeValue("start-date"))); + } + if (element.getAttributeValue("end-date") != null) { + rp.setEndDate(sdf.parse(element.getAttributeValue("end-date"))); + } + } catch (ParseException ex) { + log.error("Failed to parse embargo date. The date needs to be in the format 'yyyy-MM-dd'.", + ex); + } - //set permissions on policy add to list of policies - rp.setAction(parsePermissions(permsElement)); - policies.add(rp); + //set permissions and type on policy and add to list of policies + rp.setAction(parsePermissions(permsElement)); + rp.setRpType(ResourcePolicy.TYPE_CUSTOM); + policies.add(rp); + } } //end if "Context" element } //end for loop diff --git a/dspace-api/src/main/java/org/dspace/content/crosswalk/SubscriptionDsoMetadataForEmailCompose.java b/dspace-api/src/main/java/org/dspace/content/crosswalk/SubscriptionDsoMetadataForEmailCompose.java index 05fda2b97475..ad92018b2220 100644 --- a/dspace-api/src/main/java/org/dspace/content/crosswalk/SubscriptionDsoMetadataForEmailCompose.java +++ b/dspace-api/src/main/java/org/dspace/content/crosswalk/SubscriptionDsoMetadataForEmailCompose.java @@ -49,7 +49,7 @@ public void disseminate(Context context, DSpaceObject dso, OutputStream out) thr for (String actualMetadata : metadata) { String[] splitted = actualMetadata.split("\\."); String qualifier = null; - if (splitted.length == 1) { + if (splitted.length == 3) { qualifier = splitted[2]; } var metadataValue = itemService.getMetadataFirstValue(item, splitted[0], splitted[1], qualifier, ANY); diff --git a/dspace-api/src/main/java/org/dspace/content/dao/ItemDAO.java b/dspace-api/src/main/java/org/dspace/content/dao/ItemDAO.java index 8c593da440d2..d5103868faff 100644 --- a/dspace-api/src/main/java/org/dspace/content/dao/ItemDAO.java +++ b/dspace-api/src/main/java/org/dspace/content/dao/ItemDAO.java @@ -91,7 +91,7 @@ Iterator findByMetadataField(Context context, MetadataField metadataField, * @param collectionUuids UUIDs of the collections to search. * If none are provided, the entire repository will be searched. * @param regexClause Syntactic expression used to query the database using a regular expression - * (e.g.: "text_value ~ ?") + * (e.g.: "value ~ ?") * @param offset The offset for the query * @param limit Maximum number of items to return * @return A list containing the items that match the provided criteria @@ -162,7 +162,8 @@ Iterator findAllByCollection(Context context, Collection collection, Integ * @return item count * @throws SQLException if database error */ - int countItems(Context context, Collection collection, boolean includeArchived, boolean includeWithdrawn) + int countItems(Context context, Collection collection, boolean includeArchived, boolean includeWithdrawn, + boolean discoverable) throws SQLException; /** @@ -179,7 +180,7 @@ int countItems(Context context, Collection collection, boolean includeArchived, * @throws SQLException if database error */ int countItems(Context context, List collections, boolean includeArchived, - boolean includeWithdrawn) throws SQLException; + boolean includeWithdrawn, boolean discoverable) throws SQLException; /** * Get all Items installed or withdrawn, discoverable, and modified since a Date. @@ -214,7 +215,8 @@ Iterator findAll(Context context, boolean archived, * @return count of items * @throws SQLException if database error */ - int countItems(Context context, boolean includeArchived, boolean includeWithdrawn) throws SQLException; + int countItems(Context context, boolean includeArchived, boolean includeWithdrawn, + boolean discoverable) throws SQLException; /** * Count number of items from the specified submitter based on specific status flags @@ -226,7 +228,8 @@ Iterator findAll(Context context, boolean archived, * @return count of items * @throws SQLException if database error */ - int countItems(Context context, EPerson submitter, boolean includeArchived, boolean includeWithdrawn) + int countItems(Context context, EPerson submitter, boolean includeArchived, boolean includeWithdrawn, + boolean discoverable) throws SQLException; /** diff --git a/dspace-api/src/main/java/org/dspace/content/dao/impl/BitstreamDAOImpl.java b/dspace-api/src/main/java/org/dspace/content/dao/impl/BitstreamDAOImpl.java index a3347a40ab93..51cf6c343ec3 100644 --- a/dspace-api/src/main/java/org/dspace/content/dao/impl/BitstreamDAOImpl.java +++ b/dspace-api/src/main/java/org/dspace/content/dao/impl/BitstreamDAOImpl.java @@ -13,16 +13,21 @@ import java.util.List; import java.util.Map; import java.util.UUID; -import javax.persistence.Query; -import javax.persistence.criteria.CriteriaBuilder; -import javax.persistence.criteria.CriteriaQuery; -import javax.persistence.criteria.Root; +import jakarta.persistence.Query; +import jakarta.persistence.criteria.CriteriaBuilder; +import jakarta.persistence.criteria.CriteriaQuery; +import jakarta.persistence.criteria.Join; +import jakarta.persistence.criteria.Root; import org.dspace.content.Bitstream; import org.dspace.content.Bitstream_; +import org.dspace.content.Bundle; +import org.dspace.content.Bundle_; import org.dspace.content.Collection; +import org.dspace.content.Collection_; import org.dspace.content.Community; import org.dspace.content.Item; +import org.dspace.content.Item_; import org.dspace.content.dao.BitstreamDAO; import org.dspace.core.AbstractHibernateDSODAO; import org.dspace.core.Constants; @@ -78,14 +83,21 @@ public List findBitstreamsWithNoRecentChecksum(Context context) throw @Override public Iterator findByCommunity(Context context, Community community) throws SQLException { - Query query = createQuery(context, "select b.id from Bitstream b " + - "join b.bundles bitBundles " + - "join bitBundles.items item " + - "join item.collections itemColl " + - "join itemColl.communities community " + - "WHERE :community IN community"); - - query.setParameter("community", community); + // Select UUID of all bitstreams, joining from Bitstream -> Bundle -> Item -> Collection -> Community + // to find all that exist under the given community. + CriteriaBuilder criteriaBuilder = getCriteriaBuilder(context); + CriteriaQuery criteriaQuery = criteriaBuilder.createQuery(UUID.class); + Root bitstreamRoot = criteriaQuery.from(Bitstream.class); + criteriaQuery.select(bitstreamRoot.get(Bitstream_.id)); + // Joins from Bitstream -> Bundle -> Item -> Collection + Join joinBundle = bitstreamRoot.join(Bitstream_.bundles); + Join joinItem = joinBundle.join(Bundle_.items); + Join joinCollection = joinItem.join(Item_.collections); + // Where "community" is a member of the list of Communities linked by the collection(s) + criteriaQuery.where(criteriaBuilder.isMember(community, joinCollection.get(Collection_.COMMUNITIES))); + + // Transform into a query object to execute + Query query = createQuery(context, criteriaQuery); @SuppressWarnings("unchecked") List uuids = query.getResultList(); return new UUIDIterator(context, uuids, Bitstream.class, this); @@ -93,13 +105,20 @@ public Iterator findByCommunity(Context context, Community community) @Override public Iterator findByCollection(Context context, Collection collection) throws SQLException { - Query query = createQuery(context, "select b.id from Bitstream b " + - "join b.bundles bitBundles " + - "join bitBundles.items item " + - "join item.collections c " + - "WHERE :collection IN c"); - - query.setParameter("collection", collection); + // Select UUID of all bitstreams, joining from Bitstream -> Bundle -> Item -> Collection + // to find all that exist under the given collection. + CriteriaBuilder criteriaBuilder = getCriteriaBuilder(context); + CriteriaQuery criteriaQuery = criteriaBuilder.createQuery(UUID.class); + Root bitstreamRoot = criteriaQuery.from(Bitstream.class); + criteriaQuery.select(bitstreamRoot.get(Bitstream_.id)); + // Joins from Bitstream -> Bundle -> Item + Join joinBundle = bitstreamRoot.join(Bitstream_.bundles); + Join joinItem = joinBundle.join(Bundle_.items); + // Where "collection" is a member of the list of Collections linked by the item(s) + criteriaQuery.where(criteriaBuilder.isMember(collection, joinItem.get(Item_.collections))); + + // Transform into a query object to execute + Query query = createQuery(context, criteriaQuery); @SuppressWarnings("unchecked") List uuids = query.getResultList(); return new UUIDIterator(context, uuids, Bitstream.class, this); @@ -107,12 +126,19 @@ public Iterator findByCollection(Context context, Collection collecti @Override public Iterator findByItem(Context context, Item item) throws SQLException { - Query query = createQuery(context, "select b.id from Bitstream b " + - "join b.bundles bitBundles " + - "join bitBundles.items item " + - "WHERE :item IN item"); - - query.setParameter("item", item); + // Select UUID of all bitstreams, joining from Bitstream -> Bundle -> Item + // to find all that exist under the given item. + CriteriaBuilder criteriaBuilder = getCriteriaBuilder(context); + CriteriaQuery criteriaQuery = criteriaBuilder.createQuery(UUID.class); + Root bitstreamRoot = criteriaQuery.from(Bitstream.class); + criteriaQuery.select(bitstreamRoot.get(Bitstream_.id)); + // Join from Bitstream -> Bundle + Join joinBundle = bitstreamRoot.join(Bitstream_.bundles); + // Where "item" is a member of the list of Items linked by the bundle(s) + criteriaQuery.where(criteriaBuilder.isMember(item, joinBundle.get(Bundle_.items))); + + // Transform into a query object to execute + Query query = createQuery(context, criteriaQuery); @SuppressWarnings("unchecked") List uuids = query.getResultList(); return new UUIDIterator(context, uuids, Bitstream.class, this); diff --git a/dspace-api/src/main/java/org/dspace/content/dao/impl/BitstreamFormatDAOImpl.java b/dspace-api/src/main/java/org/dspace/content/dao/impl/BitstreamFormatDAOImpl.java index 4d9283bbec4d..eaf58fbb887a 100644 --- a/dspace-api/src/main/java/org/dspace/content/dao/impl/BitstreamFormatDAOImpl.java +++ b/dspace-api/src/main/java/org/dspace/content/dao/impl/BitstreamFormatDAOImpl.java @@ -10,11 +10,11 @@ import java.sql.SQLException; import java.util.LinkedList; import java.util.List; -import javax.persistence.Query; -import javax.persistence.criteria.CriteriaBuilder; -import javax.persistence.criteria.CriteriaQuery; -import javax.persistence.criteria.Root; +import jakarta.persistence.Query; +import jakarta.persistence.criteria.CriteriaBuilder; +import jakarta.persistence.criteria.CriteriaQuery; +import jakarta.persistence.criteria.Root; import org.dspace.content.BitstreamFormat; import org.dspace.content.BitstreamFormat_; import org.dspace.content.dao.BitstreamFormatDAO; @@ -119,7 +119,7 @@ public List findNonInternal(Context context) throws SQLExceptio ); - List orderList = new LinkedList<>(); + List orderList = new LinkedList<>(); orderList.add(criteriaBuilder.desc(bitstreamFormatRoot.get(BitstreamFormat_.supportLevel))); orderList.add(criteriaBuilder.asc(bitstreamFormatRoot.get(BitstreamFormat_.shortDescription))); criteriaQuery.orderBy(orderList); @@ -142,13 +142,10 @@ public List findByFileExtension(Context context, String extensi public List findAll(Context context, Class clazz) throws SQLException { CriteriaBuilder criteriaBuilder = getCriteriaBuilder(context); - CriteriaQuery criteriaQuery = getCriteriaQuery(criteriaBuilder, BitstreamFormat.class); + CriteriaQuery criteriaQuery = getCriteriaQuery(criteriaBuilder, BitstreamFormat.class); Root bitstreamFormatRoot = criteriaQuery.from(BitstreamFormat.class); criteriaQuery.select(bitstreamFormatRoot); - - List orderList = new LinkedList<>(); - orderList.add(criteriaBuilder.asc(bitstreamFormatRoot.get(BitstreamFormat_.id))); - criteriaQuery.orderBy(orderList); + criteriaQuery.orderBy(criteriaBuilder.asc(bitstreamFormatRoot.get(BitstreamFormat_.id))); return list(context, criteriaQuery, false, BitstreamFormat.class, -1, -1); } diff --git a/dspace-api/src/main/java/org/dspace/content/dao/impl/CollectionDAOImpl.java b/dspace-api/src/main/java/org/dspace/content/dao/impl/CollectionDAOImpl.java index c0ef6ea42fce..841da319f0b2 100644 --- a/dspace-api/src/main/java/org/dspace/content/dao/impl/CollectionDAOImpl.java +++ b/dspace-api/src/main/java/org/dspace/content/dao/impl/CollectionDAOImpl.java @@ -12,13 +12,13 @@ import java.util.ArrayList; import java.util.List; import java.util.Map; -import javax.persistence.Query; -import javax.persistence.criteria.CriteriaBuilder; -import javax.persistence.criteria.CriteriaQuery; -import javax.persistence.criteria.Join; -import javax.persistence.criteria.Predicate; -import javax.persistence.criteria.Root; +import jakarta.persistence.Query; +import jakarta.persistence.criteria.CriteriaBuilder; +import jakarta.persistence.criteria.CriteriaQuery; +import jakarta.persistence.criteria.Join; +import jakarta.persistence.criteria.Predicate; +import jakarta.persistence.criteria.Root; import org.dspace.authorize.ResourcePolicy; import org.dspace.authorize.ResourcePolicy_; import org.dspace.content.Collection; @@ -71,12 +71,12 @@ public List findAll(Context context, MetadataField order, Integer li query.append("SELECT c" + " FROM Collection c" + " left join c.metadata title on title.metadataField = :sortField and" + - " title.dSpaceObject = c.id and" + + " title.dSpaceObject = c and" + " title.place = (select min(internal.place) " + "from c.metadata internal " + "where internal.metadataField = :sortField and" + - " internal.dSpaceObject = c.id)" + - " ORDER BY LOWER(title.value)"); + " internal.dSpaceObject = c)" + + " ORDER BY LOWER(CAST(title.value as string))"); Query hibernateQuery = createQuery(context, query.toString()); if (offset != null) { hibernateQuery.setFirstResult(offset); @@ -159,7 +159,8 @@ public List findAuthorizedByGroup(Context context, EPerson ePerson, @Override public List findCollectionsWithSubscribers(Context context) throws SQLException { - return list(createQuery(context, "SELECT DISTINCT col FROM Subscription s join s.collection col")); + return list(createQuery(context, "SELECT DISTINCT c FROM Collection c JOIN Subscription s ON c.id = " + + "s.dSpaceObject")); } @Override diff --git a/dspace-api/src/main/java/org/dspace/content/dao/impl/CommunityDAOImpl.java b/dspace-api/src/main/java/org/dspace/content/dao/impl/CommunityDAOImpl.java index 7a3750485151..5712b898598e 100644 --- a/dspace-api/src/main/java/org/dspace/content/dao/impl/CommunityDAOImpl.java +++ b/dspace-api/src/main/java/org/dspace/content/dao/impl/CommunityDAOImpl.java @@ -10,13 +10,13 @@ import java.sql.SQLException; import java.util.LinkedList; import java.util.List; -import javax.persistence.Query; -import javax.persistence.criteria.CriteriaBuilder; -import javax.persistence.criteria.CriteriaQuery; -import javax.persistence.criteria.Join; -import javax.persistence.criteria.Predicate; -import javax.persistence.criteria.Root; +import jakarta.persistence.Query; +import jakarta.persistence.criteria.CriteriaBuilder; +import jakarta.persistence.criteria.CriteriaQuery; +import jakarta.persistence.criteria.Join; +import jakarta.persistence.criteria.Predicate; +import jakarta.persistence.criteria.Root; import org.dspace.authorize.ResourcePolicy; import org.dspace.authorize.ResourcePolicy_; import org.dspace.content.Community; @@ -68,12 +68,12 @@ public List findAll(Context context, MetadataField sortField, Integer queryBuilder.append("SELECT c" + " FROM Community c" + " left join c.metadata title on title.metadataField = :sortField and" + - " title.dSpaceObject = c.id and" + + " title.dSpaceObject = c and" + " title.place = (select min(internal.place) " + "from c.metadata internal " + "where internal.metadataField = :sortField and" + - " internal.dSpaceObject = c.id)" + - " ORDER BY LOWER(title.value)"); + " internal.dSpaceObject = c)" + + " ORDER BY LOWER(CAST(title.value as string))"); Query query = createQuery(context, queryBuilder.toString()); if (offset != null) { query.setFirstResult(offset); @@ -108,13 +108,13 @@ public List findAllNoParent(Context context, MetadataField sortField) queryBuilder.append("SELECT c" + " FROM Community c" + " left join c.metadata title on title.metadataField = :sortField and" + - " title.dSpaceObject = c.id and" + + " title.dSpaceObject = c and" + " title.place = (select min(internal.place) " + "from c.metadata internal " + "where internal.metadataField = :sortField and" + - " internal.dSpaceObject = c.id)" + + " internal.dSpaceObject = c)" + " WHERE c.parentCommunities IS EMPTY " + - " ORDER BY LOWER(title.value)"); + " ORDER BY LOWER(CAST(title.value as string))"); Query query = createQuery(context, queryBuilder.toString()); query.setParameter("sortField", sortField); query.setHint("org.hibernate.cacheable", Boolean.TRUE); diff --git a/dspace-api/src/main/java/org/dspace/content/dao/impl/EntityTypeDAOImpl.java b/dspace-api/src/main/java/org/dspace/content/dao/impl/EntityTypeDAOImpl.java index 489f4cd0667d..32af7ed35c31 100644 --- a/dspace-api/src/main/java/org/dspace/content/dao/impl/EntityTypeDAOImpl.java +++ b/dspace-api/src/main/java/org/dspace/content/dao/impl/EntityTypeDAOImpl.java @@ -10,11 +10,11 @@ import java.sql.SQLException; import java.util.LinkedList; import java.util.List; -import javax.persistence.criteria.CriteriaBuilder; -import javax.persistence.criteria.CriteriaQuery; -import javax.persistence.criteria.Order; -import javax.persistence.criteria.Root; +import jakarta.persistence.criteria.CriteriaBuilder; +import jakarta.persistence.criteria.CriteriaQuery; +import jakarta.persistence.criteria.Order; +import jakarta.persistence.criteria.Root; import org.dspace.content.EntityType; import org.dspace.content.EntityType_; import org.dspace.content.dao.EntityTypeDAO; @@ -59,9 +59,9 @@ public List getEntityTypesByNames(Context context, List name @Override public int countEntityTypesByNames(Context context, List names) throws SQLException { CriteriaBuilder criteriaBuilder = getCriteriaBuilder(context); - CriteriaQuery criteriaQuery = getCriteriaQuery(criteriaBuilder, EntityType.class); + CriteriaQuery criteriaQuery = criteriaBuilder.createQuery(Long.class); Root entityTypeRoot = criteriaQuery.from(EntityType.class); - criteriaQuery.select(entityTypeRoot); + criteriaQuery.select(criteriaBuilder.count(entityTypeRoot)); criteriaQuery.where(entityTypeRoot.get(EntityType_.LABEL).in(names)); return count(context, criteriaQuery, criteriaBuilder, entityTypeRoot); } diff --git a/dspace-api/src/main/java/org/dspace/content/dao/impl/ItemDAOImpl.java b/dspace-api/src/main/java/org/dspace/content/dao/impl/ItemDAOImpl.java index 0f86107f0766..27f1b4607ef4 100644 --- a/dspace-api/src/main/java/org/dspace/content/dao/impl/ItemDAOImpl.java +++ b/dspace-api/src/main/java/org/dspace/content/dao/impl/ItemDAOImpl.java @@ -15,15 +15,15 @@ import java.util.List; import java.util.Objects; import java.util.UUID; -import javax.persistence.Query; -import javax.persistence.TemporalType; -import javax.persistence.criteria.CriteriaBuilder; -import javax.persistence.criteria.CriteriaBuilder.In; -import javax.persistence.criteria.CriteriaQuery; -import javax.persistence.criteria.Predicate; -import javax.persistence.criteria.Root; -import javax.persistence.criteria.Subquery; +import jakarta.persistence.Query; +import jakarta.persistence.TemporalType; +import jakarta.persistence.criteria.CriteriaBuilder; +import jakarta.persistence.criteria.CriteriaBuilder.In; +import jakarta.persistence.criteria.CriteriaQuery; +import jakarta.persistence.criteria.Predicate; +import jakarta.persistence.criteria.Root; +import jakarta.persistence.criteria.Subquery; import org.apache.logging.log4j.Logger; import org.dspace.content.Collection; import org.dspace.content.DSpaceObject_; @@ -112,7 +112,7 @@ public Iterator findAll(Context context, boolean archived, queryStr.append(" AND discoverable = :discoverable"); if (lastModified != null) { - queryStr.append(" AND last_modified > :last_modified"); + queryStr.append(" AND lastModified > :last_modified"); } queryStr.append(" ORDER BY i.id"); @@ -223,7 +223,6 @@ public List findByMetadataQuery(Context context, List quer queryPredicates, collectionUuids, regexClause); criteriaQuery.where(criteriaBuilder.and(predicates.stream().toArray(Predicate[]::new))); criteriaQuery.orderBy(criteriaBuilder.asc(itemRoot.get(DSpaceObject_.id))); - criteriaQuery.groupBy(itemRoot.get(DSpaceObject_.id)); try { return list(context, criteriaQuery, false, Item.class, limit, (int) offset); } catch (Exception e) { @@ -237,7 +236,7 @@ public long countForMetadataQuery(Context context, List queryPre List collectionUuids, String regexClause) throws SQLException { // Build the query infrastructure CriteriaBuilder criteriaBuilder = getCriteriaBuilder(context); - CriteriaQuery criteriaQuery = getCriteriaQuery(criteriaBuilder, Item.class); + CriteriaQuery criteriaQuery = criteriaBuilder.createQuery(Long.class); // Select Root itemRoot = criteriaQuery.from(Item.class); // Apply the selected predicates @@ -286,7 +285,7 @@ private List toPredicates(CriteriaBuilder criteriaBuilder, Criter Subquery mvQuery = query.subquery(MetadataValue.class); Root mvRoot = mvQuery.from(MetadataValue.class); mvPredicates.add(criteriaBuilder.equal( - mvRoot.get(MetadataValue_.D_SPACE_OBJECT), root.get(DSpaceObject_.ID))); + mvRoot.get(MetadataValue_.D_SPACE_OBJECT), root)); if (!predicate.getFields().isEmpty()) { In inFields = criteriaBuilder.in(mvRoot.get(MetadataValue_.METADATA_FIELD)); @@ -329,11 +328,18 @@ public Iterator findByAuthorityValue(Context context, MetadataField metada @Override public Iterator findArchivedByCollection(Context context, Collection collection, Integer limit, Integer offset) throws SQLException { - Query query = createQuery(context, - "select i.id from Item i join i.collections c " + - "WHERE :collection IN c AND i.inArchive=:in_archive ORDER BY i.id"); - query.setParameter("collection", collection); - query.setParameter("in_archive", true); + // Select UUID of all items which have this "collection" in their list of collections and are in_archive + CriteriaBuilder criteriaBuilder = getCriteriaBuilder(context); + CriteriaQuery criteriaQuery = criteriaBuilder.createQuery(UUID.class); + Root itemRoot = criteriaQuery.from(Item.class); + criteriaQuery.select(itemRoot.get(Item_.id)); + criteriaQuery.where(criteriaBuilder.and( + criteriaBuilder.isTrue((itemRoot.get(Item_.inArchive))), + criteriaBuilder.isMember(collection, itemRoot.get(Item_.collections)))); + criteriaQuery.orderBy(criteriaBuilder.asc(itemRoot.get((Item_.id)))); + + // Transform into a query object to execute + Query query = createQuery(context, criteriaQuery); if (offset != null) { query.setFirstResult(offset); } @@ -357,16 +363,15 @@ public Iterator findArchivedByCollectionExcludingOwning(Context context, C criteriaBuilder.isMember(collection, itemRoot.get(Item_.collections)), criteriaBuilder.isTrue(itemRoot.get(Item_.inArchive)))); criteriaQuery.orderBy(criteriaBuilder.asc(itemRoot.get(DSpaceObject_.id))); - criteriaQuery.groupBy(itemRoot.get(DSpaceObject_.id)); return list(context, criteriaQuery, false, Item.class, limit, offset).iterator(); } @Override public int countArchivedByCollectionExcludingOwning(Context context, Collection collection) throws SQLException { CriteriaBuilder criteriaBuilder = getCriteriaBuilder(context); - CriteriaQuery criteriaQuery = getCriteriaQuery(criteriaBuilder, Item.class); + CriteriaQuery criteriaQuery = criteriaBuilder.createQuery(Long.class); Root itemRoot = criteriaQuery.from(Item.class); - criteriaQuery.select(itemRoot); + criteriaQuery.select(criteriaBuilder.count(itemRoot)); criteriaQuery.where(criteriaBuilder.and( criteriaBuilder.notEqual(itemRoot.get(Item_.owningCollection), collection), criteriaBuilder.isMember(collection, itemRoot.get(Item_.collections)), @@ -376,9 +381,16 @@ public int countArchivedByCollectionExcludingOwning(Context context, Collection @Override public Iterator findAllByCollection(Context context, Collection collection) throws SQLException { - Query query = createQuery(context, - "select i.id from Item i join i.collections c WHERE :collection IN c ORDER BY i.id"); - query.setParameter("collection", collection); + // Select UUID of all items which have this "collection" in their list of collections + CriteriaBuilder criteriaBuilder = getCriteriaBuilder(context); + CriteriaQuery criteriaQuery = criteriaBuilder.createQuery(UUID.class); + Root itemRoot = criteriaQuery.from(Item.class); + criteriaQuery.select(itemRoot.get(Item_.id)); + criteriaQuery.where(criteriaBuilder.isMember(collection, itemRoot.get(Item_.collections))); + criteriaQuery.orderBy(criteriaBuilder.asc(itemRoot.get((Item_.id)))); + + // Transform into a query object to execute + Query query = createQuery(context, criteriaQuery); @SuppressWarnings("unchecked") List uuids = query.getResultList(); return new UUIDIterator(context, uuids, Item.class, this); @@ -387,10 +399,16 @@ public Iterator findAllByCollection(Context context, Collection collection @Override public Iterator findAllByCollection(Context context, Collection collection, Integer limit, Integer offset) throws SQLException { - Query query = createQuery(context, - "select i.id from Item i join i.collections c WHERE :collection IN c ORDER BY i.id"); - query.setParameter("collection", collection); + // Build Query to select UUID of all items which have this "collection" in their list of collections. + CriteriaBuilder criteriaBuilder = getCriteriaBuilder(context); + CriteriaQuery criteriaQuery = criteriaBuilder.createQuery(UUID.class); + Root itemRoot = criteriaQuery.from(Item.class); + criteriaQuery.select(itemRoot.get(Item_.id)); + criteriaQuery.where(criteriaBuilder.isMember(collection, itemRoot.get(Item_.collections))); + criteriaQuery.orderBy(criteriaBuilder.asc(itemRoot.get((Item_.id)))); + // Transform into a query object to execute + Query query = createQuery(context, criteriaQuery); if (offset != null) { query.setFirstResult(offset); } @@ -403,30 +421,38 @@ public Iterator findAllByCollection(Context context, Collection collection } @Override - public int countItems(Context context, Collection collection, boolean includeArchived, boolean includeWithdrawn) + public int countItems(Context context, Collection collection, boolean includeArchived, boolean includeWithdrawn, + boolean discoverable) throws SQLException { - Query query = createQuery(context, - "select count(i) from Item i join i.collections c " + - "WHERE :collection IN c AND i.inArchive=:in_archive AND i.withdrawn=:withdrawn"); - query.setParameter("collection", collection); - query.setParameter("in_archive", includeArchived); - query.setParameter("withdrawn", includeWithdrawn); - - return count(query); + // Build query to select all Items have this "collection" in their list of collections + // AND also have the inArchive or isWithdrawn set as specified + CriteriaBuilder criteriaBuilder = getCriteriaBuilder(context); + CriteriaQuery criteriaQuery = criteriaBuilder.createQuery(Long.class); + Root itemRoot = criteriaQuery.from(Item.class); + criteriaQuery.select(criteriaBuilder.count(itemRoot)); + criteriaQuery.where(criteriaBuilder.and( + criteriaBuilder.equal(itemRoot.get(Item_.inArchive), includeArchived), + criteriaBuilder.equal(itemRoot.get(Item_.withdrawn), includeWithdrawn), + criteriaBuilder.equal(itemRoot.get(Item_.discoverable), discoverable), + criteriaBuilder.isMember(collection, itemRoot.get(Item_.collections)))); + // Execute and return count + return count(context, criteriaQuery, criteriaBuilder, itemRoot); } @Override public int countItems(Context context, List collections, boolean includeArchived, - boolean includeWithdrawn) throws SQLException { + boolean includeWithdrawn, boolean discoverable) throws SQLException { if (collections.size() == 0) { return 0; } Query query = createQuery(context, "select count(distinct i) from Item i " + "join i.collections collection " + - "WHERE collection IN (:collections) AND i.inArchive=:in_archive AND i.withdrawn=:withdrawn"); + "WHERE collection IN (:collections) AND i.inArchive=:in_archive AND i.withdrawn=:withdrawn AND " + + "discoverable=:discoverable"); query.setParameter("collections", collections); query.setParameter("in_archive", includeArchived); query.setParameter("withdrawn", includeWithdrawn); + query.setParameter("discoverable", discoverable); return count(query); } @@ -449,24 +475,29 @@ public int countRows(Context context) throws SQLException { } @Override - public int countItems(Context context, boolean includeArchived, boolean includeWithdrawn) throws SQLException { + public int countItems(Context context, boolean includeArchived, boolean includeWithdrawn, + boolean discoverable) throws SQLException { Query query = createQuery(context, "SELECT count(*) FROM Item i " + - "WHERE i.inArchive=:in_archive AND i.withdrawn=:withdrawn"); + "WHERE i.inArchive=:in_archive AND i.withdrawn=:withdrawn AND discoverable=:discoverable"); query.setParameter("in_archive", includeArchived); query.setParameter("withdrawn", includeWithdrawn); + query.setParameter("discoverable", discoverable); return count(query); } @Override - public int countItems(Context context, EPerson submitter, boolean includeArchived, boolean includeWithdrawn) + public int countItems(Context context, EPerson submitter, boolean includeArchived, boolean includeWithdrawn, + boolean discoverable) throws SQLException { Query query = createQuery(context, "SELECT count(*) FROM Item i join i.submitter submitter " + - "WHERE i.inArchive=:in_archive AND i.withdrawn=:withdrawn AND submitter = :submitter"); + "WHERE i.inArchive=:in_archive AND i.withdrawn=:withdrawn AND submitter = :submitter AND " + + "discoverable=:discoverable"); query.setParameter("submitter", submitter); query.setParameter("in_archive", includeArchived); query.setParameter("withdrawn", includeWithdrawn); + query.setParameter("discoverable", discoverable); return count(query); } diff --git a/dspace-api/src/main/java/org/dspace/content/dao/impl/MetadataFieldDAOImpl.java b/dspace-api/src/main/java/org/dspace/content/dao/impl/MetadataFieldDAOImpl.java index 512e4879bb2e..3bd0407395a5 100644 --- a/dspace-api/src/main/java/org/dspace/content/dao/impl/MetadataFieldDAOImpl.java +++ b/dspace-api/src/main/java/org/dspace/content/dao/impl/MetadataFieldDAOImpl.java @@ -12,12 +12,12 @@ import java.util.LinkedList; import java.util.List; import java.util.Map; -import javax.persistence.Query; -import javax.persistence.criteria.CriteriaBuilder; -import javax.persistence.criteria.CriteriaQuery; -import javax.persistence.criteria.Join; -import javax.persistence.criteria.Root; +import jakarta.persistence.Query; +import jakarta.persistence.criteria.CriteriaBuilder; +import jakarta.persistence.criteria.CriteriaQuery; +import jakarta.persistence.criteria.Join; +import jakarta.persistence.criteria.Root; import org.apache.commons.lang3.StringUtils; import org.apache.logging.log4j.Logger; import org.dspace.content.MetadataField; @@ -159,7 +159,7 @@ public List findAll(Context context, Class clazz) Join join = metadataFieldRoot.join("metadataSchema"); criteriaQuery.select(metadataFieldRoot); - List orderList = new LinkedList<>(); + List orderList = new LinkedList<>(); orderList.add(criteriaBuilder.asc(join.get(MetadataSchema_.name))); orderList.add(criteriaBuilder.asc(metadataFieldRoot.get(MetadataField_.element))); orderList.add(criteriaBuilder.asc(metadataFieldRoot.get(MetadataField_.qualifier))); diff --git a/dspace-api/src/main/java/org/dspace/content/dao/impl/MetadataSchemaDAOImpl.java b/dspace-api/src/main/java/org/dspace/content/dao/impl/MetadataSchemaDAOImpl.java index 71eb487b8395..4630bed90b16 100644 --- a/dspace-api/src/main/java/org/dspace/content/dao/impl/MetadataSchemaDAOImpl.java +++ b/dspace-api/src/main/java/org/dspace/content/dao/impl/MetadataSchemaDAOImpl.java @@ -10,11 +10,11 @@ import java.sql.SQLException; import java.util.ArrayList; import java.util.List; -import javax.persistence.Query; -import javax.persistence.criteria.CriteriaBuilder; -import javax.persistence.criteria.CriteriaQuery; -import javax.persistence.criteria.Root; +import jakarta.persistence.Query; +import jakarta.persistence.criteria.CriteriaBuilder; +import jakarta.persistence.criteria.CriteriaQuery; +import jakarta.persistence.criteria.Root; import org.dspace.content.MetadataSchema; import org.dspace.content.MetadataSchema_; import org.dspace.content.dao.MetadataSchemaDAO; @@ -63,7 +63,7 @@ public List findAll(Context context, Class clazz) throws SQLExce Root metadataSchemaRoot = criteriaQuery.from(MetadataSchema.class); criteriaQuery.select(metadataSchemaRoot); - List orderList = new ArrayList<>(); + List orderList = new ArrayList<>(); orderList.add(criteriaBuilder.asc(metadataSchemaRoot.get(MetadataSchema_.id))); criteriaQuery.orderBy(orderList); diff --git a/dspace-api/src/main/java/org/dspace/content/dao/impl/MetadataValueDAOImpl.java b/dspace-api/src/main/java/org/dspace/content/dao/impl/MetadataValueDAOImpl.java index f37ced9ab7d4..dc624c98c6aa 100644 --- a/dspace-api/src/main/java/org/dspace/content/dao/impl/MetadataValueDAOImpl.java +++ b/dspace-api/src/main/java/org/dspace/content/dao/impl/MetadataValueDAOImpl.java @@ -10,12 +10,12 @@ import java.sql.SQLException; import java.util.Iterator; import java.util.List; -import javax.persistence.Query; -import javax.persistence.criteria.CriteriaBuilder; -import javax.persistence.criteria.CriteriaQuery; -import javax.persistence.criteria.Join; -import javax.persistence.criteria.Root; +import jakarta.persistence.Query; +import jakarta.persistence.criteria.CriteriaBuilder; +import jakarta.persistence.criteria.CriteriaQuery; +import jakarta.persistence.criteria.Join; +import jakarta.persistence.criteria.Root; import org.dspace.content.MetadataField; import org.dspace.content.MetadataField_; import org.dspace.content.MetadataValue; @@ -53,7 +53,7 @@ public Iterator findItemValuesByFieldAndValue(Context context, MetadataField metadataField, String value) throws SQLException { String queryString = "SELECT m from MetadataValue m " + - "join Item i on m.dSpaceObject = i.id where m.metadataField.id = :metadata_field_id " + + "join Item i on m.dSpaceObject = i where m.metadataField.id = :metadata_field_id " + "and m.value = :text_value"; Query query = createQuery(context, queryString); query.setParameter("metadata_field_id", metadataField.getID()); @@ -84,7 +84,7 @@ public void deleteByMetadataField(Context context, MetadataField metadataField) public MetadataValue getMinimum(Context context, int metadataFieldId) throws SQLException { String queryString = "SELECT m FROM MetadataValue m JOIN FETCH m.metadataField WHERE m.metadataField.id = " + - ":metadata_field_id ORDER BY text_value"; + ":metadata_field_id ORDER BY value"; Query query = createQuery(context, queryString); query.setParameter("metadata_field_id", metadataFieldId); query.setMaxResults(1); diff --git a/dspace-api/src/main/java/org/dspace/content/dao/impl/ProcessDAOImpl.java b/dspace-api/src/main/java/org/dspace/content/dao/impl/ProcessDAOImpl.java index c243352a629b..23e78acf5eec 100644 --- a/dspace-api/src/main/java/org/dspace/content/dao/impl/ProcessDAOImpl.java +++ b/dspace-api/src/main/java/org/dspace/content/dao/impl/ProcessDAOImpl.java @@ -14,11 +14,11 @@ import java.util.LinkedList; import java.util.List; import java.util.Map; -import javax.persistence.criteria.CriteriaBuilder; -import javax.persistence.criteria.CriteriaQuery; -import javax.persistence.criteria.Predicate; -import javax.persistence.criteria.Root; +import jakarta.persistence.criteria.CriteriaBuilder; +import jakarta.persistence.criteria.CriteriaQuery; +import jakarta.persistence.criteria.Predicate; +import jakarta.persistence.criteria.Root; import org.apache.commons.lang3.StringUtils; import org.dspace.content.ProcessStatus; import org.dspace.content.dao.ProcessDAO; @@ -75,9 +75,9 @@ public List findAll(Context context, int limit, int offset) throws SQLE public int countRows(Context context) throws SQLException { CriteriaBuilder criteriaBuilder = getCriteriaBuilder(context); - CriteriaQuery criteriaQuery = getCriteriaQuery(criteriaBuilder, Process.class); + CriteriaQuery criteriaQuery = criteriaBuilder.createQuery(Long.class); Root processRoot = criteriaQuery.from(Process.class); - criteriaQuery.select(processRoot); + criteriaQuery.select(criteriaBuilder.count(processRoot)); return count(context, criteriaQuery, criteriaBuilder, processRoot); @@ -143,9 +143,9 @@ public int countTotalWithParameters(Context context, ProcessQueryParameterContai throws SQLException { CriteriaBuilder criteriaBuilder = getCriteriaBuilder(context); - CriteriaQuery criteriaQuery = getCriteriaQuery(criteriaBuilder, Process.class); + CriteriaQuery criteriaQuery = criteriaBuilder.createQuery(Long.class); Root processRoot = criteriaQuery.from(Process.class); - criteriaQuery.select(processRoot); + criteriaQuery.select(criteriaBuilder.count(processRoot)); addProcessQueryParameters(processQueryParameterContainer, criteriaBuilder, criteriaQuery, processRoot); return count(context, criteriaQuery, criteriaBuilder, processRoot); @@ -160,7 +160,7 @@ public List findByUser(Context context, EPerson user, int limit, int of criteriaQuery.select(processRoot); criteriaQuery.where(criteriaBuilder.equal(processRoot.get(Process_.E_PERSON), user)); - List orderList = new LinkedList<>(); + List orderList = new LinkedList<>(); orderList.add(criteriaBuilder.desc(processRoot.get(Process_.PROCESS_ID))); criteriaQuery.orderBy(orderList); @@ -170,10 +170,10 @@ public List findByUser(Context context, EPerson user, int limit, int of @Override public int countByUser(Context context, EPerson user) throws SQLException { CriteriaBuilder criteriaBuilder = getCriteriaBuilder(context); - CriteriaQuery criteriaQuery = getCriteriaQuery(criteriaBuilder, Process.class); + CriteriaQuery criteriaQuery = criteriaBuilder.createQuery(Long.class); Root processRoot = criteriaQuery.from(Process.class); - criteriaQuery.select(processRoot); + criteriaQuery.select(criteriaBuilder.count(processRoot)); criteriaQuery.where(criteriaBuilder.equal(processRoot.get(Process_.E_PERSON), user)); return count(context, criteriaQuery, criteriaBuilder, processRoot); diff --git a/dspace-api/src/main/java/org/dspace/content/dao/impl/RelationshipDAOImpl.java b/dspace-api/src/main/java/org/dspace/content/dao/impl/RelationshipDAOImpl.java index e2f84bc1cb64..43bbc15c31b8 100644 --- a/dspace-api/src/main/java/org/dspace/content/dao/impl/RelationshipDAOImpl.java +++ b/dspace-api/src/main/java/org/dspace/content/dao/impl/RelationshipDAOImpl.java @@ -12,13 +12,13 @@ import java.util.List; import java.util.UUID; import java.util.stream.Collectors; -import javax.persistence.Query; -import javax.persistence.Tuple; -import javax.persistence.criteria.CriteriaBuilder; -import javax.persistence.criteria.CriteriaQuery; -import javax.persistence.criteria.Predicate; -import javax.persistence.criteria.Root; +import jakarta.persistence.Query; +import jakarta.persistence.Tuple; +import jakarta.persistence.criteria.CriteriaBuilder; +import jakarta.persistence.criteria.CriteriaQuery; +import jakarta.persistence.criteria.Predicate; +import jakarta.persistence.criteria.Root; import org.dspace.content.Item; import org.dspace.content.Item_; import org.dspace.content.Relationship; @@ -167,9 +167,9 @@ public int countByItem( Context context, Item item, boolean excludeTilted, boolean excludeNonLatest ) throws SQLException { CriteriaBuilder criteriaBuilder = getCriteriaBuilder(context); - CriteriaQuery criteriaQuery = getCriteriaQuery(criteriaBuilder, Relationship.class); + CriteriaQuery criteriaQuery = criteriaBuilder.createQuery(Long.class); Root relationshipRoot = criteriaQuery.from(Relationship.class); - criteriaQuery.select(relationshipRoot); + criteriaQuery.select(criteriaBuilder.count(relationshipRoot)); criteriaQuery.where( criteriaBuilder.or( @@ -355,9 +355,9 @@ public List findByTypeName(Context context, String typeName, Integ public int countByRelationshipType(Context context, RelationshipType relationshipType) throws SQLException { CriteriaBuilder criteriaBuilder = getCriteriaBuilder(context); - CriteriaQuery criteriaQuery = getCriteriaQuery(criteriaBuilder, Relationship.class); + CriteriaQuery criteriaQuery = criteriaBuilder.createQuery(Long.class); Root relationshipRoot = criteriaQuery.from(Relationship.class); - criteriaQuery.select(relationshipRoot); + criteriaQuery.select(criteriaBuilder.count(relationshipRoot)); criteriaQuery .where(criteriaBuilder.equal(relationshipRoot.get(Relationship_.relationshipType), relationshipType)); return count(context, criteriaQuery, criteriaBuilder, relationshipRoot); @@ -366,9 +366,9 @@ public int countByRelationshipType(Context context, RelationshipType relationshi @Override public int countRows(Context context) throws SQLException { CriteriaBuilder criteriaBuilder = getCriteriaBuilder(context); - CriteriaQuery criteriaQuery = getCriteriaQuery(criteriaBuilder, Relationship.class); + CriteriaQuery criteriaQuery = criteriaBuilder.createQuery(Long.class); Root relationshipRoot = criteriaQuery.from(Relationship.class); - criteriaQuery.select(relationshipRoot); + criteriaQuery.select(criteriaBuilder.count(relationshipRoot)); return count(context, criteriaQuery, criteriaBuilder, relationshipRoot); } @@ -377,9 +377,9 @@ public int countByItemAndRelationshipType( Context context, Item item, RelationshipType relationshipType, boolean isLeft, boolean excludeNonLatest ) throws SQLException { CriteriaBuilder criteriaBuilder = getCriteriaBuilder(context); - CriteriaQuery criteriaQuery = getCriteriaQuery(criteriaBuilder, Relationship.class); + CriteriaQuery criteriaQuery = criteriaBuilder.createQuery(Long.class); Root relationshipRoot = criteriaQuery.from(Relationship.class); - criteriaQuery.select(relationshipRoot); + criteriaQuery.select(criteriaBuilder.count(relationshipRoot)); if (isLeft) { criteriaQuery.where( @@ -407,8 +407,9 @@ public int countByTypeName(Context context, String typeName) ids.add(relationshipType.getID()); } CriteriaBuilder criteriaBuilder = getCriteriaBuilder(context); - CriteriaQuery criteriaQuery = getCriteriaQuery(criteriaBuilder, Relationship.class); + CriteriaQuery criteriaQuery = criteriaBuilder.createQuery(Long.class); Root relationshipRoot = criteriaQuery.from(Relationship.class); + criteriaQuery.select(criteriaBuilder.count(relationshipRoot)); criteriaQuery.where(relationshipRoot.get(Relationship_.relationshipType).in(ids)); return count(context, criteriaQuery, criteriaBuilder, relationshipRoot); } @@ -417,14 +418,14 @@ public int countByTypeName(Context context, String typeName) public List findByItemAndRelationshipTypeAndList(Context context, UUID focusUUID, RelationshipType relationshipType, List items, boolean isLeft, int offset, int limit) throws SQLException { - String side = isLeft ? "left_id" : "right_id"; - String otherSide = !isLeft ? "left_id" : "right_id"; + String side = isLeft ? "leftItem.id" : "rightItem.id"; + String otherSide = !isLeft ? "leftItem.id" : "rightItem.id"; Query query = createQuery(context, "FROM " + Relationship.class.getSimpleName() + - " WHERE type_id = (:typeId) " + + " WHERE relationshipType = :type " + "AND " + side + " = (:focusUUID) " + "AND " + otherSide + " in (:list) " + "ORDER BY id"); - query.setParameter("typeId", relationshipType.getID()); + query.setParameter("type", relationshipType); query.setParameter("focusUUID", focusUUID); query.setParameter("list", items); return list(query, limit, offset); @@ -433,14 +434,14 @@ public List findByItemAndRelationshipTypeAndList(Context context, @Override public int countByItemAndRelationshipTypeAndList(Context context, UUID focusUUID, RelationshipType relationshipType, List items, boolean isLeft) throws SQLException { - String side = isLeft ? "left_id" : "right_id"; - String otherSide = !isLeft ? "left_id" : "right_id"; + String side = isLeft ? "leftItem.id" : "rightItem.id"; + String otherSide = !isLeft ? "leftItem.id" : "rightItem.id"; Query query = createQuery(context, "SELECT count(*) " + "FROM " + Relationship.class.getSimpleName() + - " WHERE type_id = (:typeId) " + + " WHERE relationshipType = :type " + "AND " + side + " = (:focusUUID) " + "AND " + otherSide + " in (:list)"); - query.setParameter("typeId", relationshipType.getID()); + query.setParameter("type", relationshipType); query.setParameter("focusUUID", focusUUID); query.setParameter("list", items); return count(query); diff --git a/dspace-api/src/main/java/org/dspace/content/dao/impl/RelationshipTypeDAOImpl.java b/dspace-api/src/main/java/org/dspace/content/dao/impl/RelationshipTypeDAOImpl.java index 375ac88954e7..6733329ec40c 100644 --- a/dspace-api/src/main/java/org/dspace/content/dao/impl/RelationshipTypeDAOImpl.java +++ b/dspace-api/src/main/java/org/dspace/content/dao/impl/RelationshipTypeDAOImpl.java @@ -10,10 +10,10 @@ import java.sql.SQLException; import java.util.LinkedList; import java.util.List; -import javax.persistence.criteria.CriteriaBuilder; -import javax.persistence.criteria.CriteriaQuery; -import javax.persistence.criteria.Root; +import jakarta.persistence.criteria.CriteriaBuilder; +import jakarta.persistence.criteria.CriteriaQuery; +import jakarta.persistence.criteria.Root; import org.dspace.content.EntityType; import org.dspace.content.RelationshipType; import org.dspace.content.RelationshipType_; @@ -95,7 +95,7 @@ public List findByEntityType(Context context, EntityType entit .equal(relationshipTypeRoot.get(RelationshipType_.rightType), entityType) ) ); - List orderList = new LinkedList<>(); + List orderList = new LinkedList<>(); orderList.add(criteriaBuilder.asc(relationshipTypeRoot.get(RelationshipType_.ID))); criteriaQuery.orderBy(orderList); return list(context, criteriaQuery, false, RelationshipType.class, limit, offset); @@ -130,9 +130,9 @@ public List findByEntityType(Context context, EntityType entit @Override public int countByEntityType(Context context, EntityType entityType) throws SQLException { CriteriaBuilder criteriaBuilder = getCriteriaBuilder(context); - CriteriaQuery criteriaQuery = getCriteriaQuery(criteriaBuilder, RelationshipType.class); + CriteriaQuery criteriaQuery = criteriaBuilder.createQuery(Long.class); Root relationshipTypeRoot = criteriaQuery.from(RelationshipType.class); - criteriaQuery.select(relationshipTypeRoot); + criteriaQuery.select(criteriaBuilder.count(relationshipTypeRoot)); criteriaQuery.where(criteriaBuilder.or( criteriaBuilder.equal(relationshipTypeRoot.get(RelationshipType_.leftType), entityType), criteriaBuilder.equal(relationshipTypeRoot.get(RelationshipType_.rightType), entityType) diff --git a/dspace-api/src/main/java/org/dspace/content/dao/impl/SiteDAOImpl.java b/dspace-api/src/main/java/org/dspace/content/dao/impl/SiteDAOImpl.java index 8889909b1a49..ebaa78ae3788 100644 --- a/dspace-api/src/main/java/org/dspace/content/dao/impl/SiteDAOImpl.java +++ b/dspace-api/src/main/java/org/dspace/content/dao/impl/SiteDAOImpl.java @@ -8,10 +8,10 @@ package org.dspace.content.dao.impl; import java.sql.SQLException; -import javax.persistence.criteria.CriteriaBuilder; -import javax.persistence.criteria.CriteriaQuery; -import javax.persistence.criteria.Root; +import jakarta.persistence.criteria.CriteriaBuilder; +import jakarta.persistence.criteria.CriteriaQuery; +import jakarta.persistence.criteria.Root; import org.dspace.content.Site; import org.dspace.content.dao.SiteDAO; import org.dspace.core.AbstractHibernateDAO; diff --git a/dspace-api/src/main/java/org/dspace/content/dao/impl/WorkspaceItemDAOImpl.java b/dspace-api/src/main/java/org/dspace/content/dao/impl/WorkspaceItemDAOImpl.java index 138451365522..0862a81e8678 100644 --- a/dspace-api/src/main/java/org/dspace/content/dao/impl/WorkspaceItemDAOImpl.java +++ b/dspace-api/src/main/java/org/dspace/content/dao/impl/WorkspaceItemDAOImpl.java @@ -12,11 +12,11 @@ import java.util.LinkedList; import java.util.List; import java.util.Map; -import javax.persistence.Query; -import javax.persistence.criteria.CriteriaBuilder; -import javax.persistence.criteria.CriteriaQuery; -import javax.persistence.criteria.Root; +import jakarta.persistence.Query; +import jakarta.persistence.criteria.CriteriaBuilder; +import jakarta.persistence.criteria.CriteriaQuery; +import jakarta.persistence.criteria.Root; import org.dspace.content.Collection; import org.dspace.content.Item; import org.dspace.content.WorkspaceItem; @@ -88,7 +88,7 @@ public List findAll(Context context) throws SQLException { Root workspaceItemRoot = criteriaQuery.from(WorkspaceItem.class); criteriaQuery.select(workspaceItemRoot); - List orderList = new LinkedList<>(); + List orderList = new LinkedList<>(); orderList.add(criteriaBuilder.asc(workspaceItemRoot.get(WorkspaceItem_.workspaceItemId))); criteriaQuery.orderBy(orderList); @@ -103,7 +103,7 @@ public List findAll(Context context, Integer limit, Integer offse Root workspaceItemRoot = criteriaQuery.from(WorkspaceItem.class); criteriaQuery.select(workspaceItemRoot); - List orderList = new LinkedList<>(); + List orderList = new LinkedList<>(); orderList.add(criteriaBuilder.asc(workspaceItemRoot.get(WorkspaceItem_.workspaceItemId))); criteriaQuery.orderBy(orderList); diff --git a/dspace-api/src/main/java/org/dspace/content/dto/MetadataValueDTO.java b/dspace-api/src/main/java/org/dspace/content/dto/MetadataValueDTO.java index 7bfa8504f902..acdbd712987d 100644 --- a/dspace-api/src/main/java/org/dspace/content/dto/MetadataValueDTO.java +++ b/dspace-api/src/main/java/org/dspace/content/dto/MetadataValueDTO.java @@ -7,6 +7,9 @@ */ package org.dspace.content.dto; +import java.util.Comparator; +import java.util.Objects; + import org.dspace.content.MetadataField; import org.dspace.content.MetadataFieldName; import org.dspace.content.MetadataSchema; @@ -181,4 +184,60 @@ public Integer getSecurityLevel() { public void setSecurityLevel(int securityLevel) { this.securityLevel = securityLevel; } + @Override + public String toString() { + return "MetadataValueDTO{" + + "schema='" + schema + '\'' + + ", element='" + element + '\'' + + ", qualifier='" + qualifier + '\'' + + ", language='" + language + '\'' + + ", value='" + value + '\'' + + ", authority='" + authority + '\'' + + ", confidence=" + confidence + + "}\n"; + } + + @Override + public boolean equals(Object o) { + if (this == o) { + return true; + } + if (o == null || getClass() != o.getClass()) { + return false; + } + MetadataValueDTO that = (MetadataValueDTO) o; + return confidence == that.confidence && + Objects.equals(schema, that.schema) && Objects.equals(element, that.element) && + Objects.equals(qualifier, that.qualifier) && Objects.equals(language, that.language) && + Objects.equals(value, that.value) && Objects.equals(authority, that.authority); + } + + @Override + public int hashCode() { + return Objects.hash(schema, element, qualifier, language, value, authority, confidence); + } + + /** + * Build a comparator to support proper sorting of MetadataValueDTO objects. + * Order of sorting is based on how these things are normally sorted in human-readable formats, with + * field name -> value -> lang/auth/etc being the usual order we use. In all these individual tests, nulls are + * sorted first (eg. dc.title before dc.title.alternative) + * @see org.dspace.external.model.ExternalDataObject#equals(Object) + * 1. Qualifier + * 2. Element + * 3. Schema + * 4. Value + * 5. Language + * 6. Authority + * @return comparator + */ + public static Comparator comparator() { + return Comparator.comparing(MetadataValueDTO::getQualifier, Comparator.nullsFirst(Comparator.naturalOrder())) + .thenComparing(MetadataValueDTO::getElement, Comparator.nullsFirst(Comparator.naturalOrder())) + .thenComparing(MetadataValueDTO::getSchema, Comparator.nullsFirst(Comparator.naturalOrder())) + .thenComparing(MetadataValueDTO::getValue, Comparator.nullsFirst(Comparator.naturalOrder())) + .thenComparing(MetadataValueDTO::getLanguage, Comparator.nullsFirst(Comparator.naturalOrder())) + .thenComparing(MetadataValueDTO::getAuthority, Comparator.nullsFirst(Comparator.naturalOrder())); + } + } diff --git a/dspace-api/src/main/java/org/dspace/content/packager/AbstractMETSDisseminator.java b/dspace-api/src/main/java/org/dspace/content/packager/AbstractMETSDisseminator.java index 685fd9000da8..fd50ec8023e2 100644 --- a/dspace-api/src/main/java/org/dspace/content/packager/AbstractMETSDisseminator.java +++ b/dspace-api/src/main/java/org/dspace/content/packager/AbstractMETSDisseminator.java @@ -628,6 +628,7 @@ protected MdSec makeMdSec(Context context, DSpaceObject dso, Class mdSecClass, // Disseminate crosswalk output to an outputstream ByteArrayOutputStream disseminateOutput = new ByteArrayOutputStream(); sxwalk.disseminate(context, dso, disseminateOutput); + disseminateOutput.close(); // Convert output to an inputstream, so we can write to manifest or Zip file ByteArrayInputStream crosswalkedStream = new ByteArrayInputStream( disseminateOutput.toByteArray()); diff --git a/dspace-api/src/main/java/org/dspace/content/packager/AbstractMETSIngester.java b/dspace-api/src/main/java/org/dspace/content/packager/AbstractMETSIngester.java index 98277c4f9c06..0ed0abe21825 100644 --- a/dspace-api/src/main/java/org/dspace/content/packager/AbstractMETSIngester.java +++ b/dspace-api/src/main/java/org/dspace/content/packager/AbstractMETSIngester.java @@ -636,6 +636,9 @@ protected DSpaceObject replaceObject(Context context, DSpaceObject dso, owningCollection = inProgressSubmission.getCollection(); } + itemService.populateWithTemplateItemMetadata(context, owningCollection, params.useCollectionTemplate(), + item); + addLicense(context, item, license, owningCollection , params); diff --git a/dspace-api/src/main/java/org/dspace/content/packager/PackageParameters.java b/dspace-api/src/main/java/org/dspace/content/packager/PackageParameters.java index b472a52c3bad..f2b95118675b 100644 --- a/dspace-api/src/main/java/org/dspace/content/packager/PackageParameters.java +++ b/dspace-api/src/main/java/org/dspace/content/packager/PackageParameters.java @@ -9,7 +9,8 @@ import java.util.Enumeration; import java.util.Properties; -import javax.servlet.ServletRequest; + +import jakarta.servlet.ServletRequest; /** * Parameter list for SIP and DIP packagers. It's really just diff --git a/dspace-api/src/main/java/org/dspace/content/packager/PackageUtils.java b/dspace-api/src/main/java/org/dspace/content/packager/PackageUtils.java index 9e7d870076aa..9a8ae4606487 100644 --- a/dspace-api/src/main/java/org/dspace/content/packager/PackageUtils.java +++ b/dspace-api/src/main/java/org/dspace/content/packager/PackageUtils.java @@ -503,7 +503,7 @@ public static DSpaceObject createDSpaceObject(Context context, DSpaceObject pare wsi = workspaceItemService.create(context, (Collection)parent, params.useCollectionTemplate()); } else { wsi = workspaceItemService.create(context, (Collection)parent, - uuid, params.useCollectionTemplate()); + uuid, params.useCollectionTemplate(), false); } // Please note that we are returning an Item which is *NOT* yet in the Archive, diff --git a/dspace-api/src/main/java/org/dspace/content/packager/RoleDisseminator.java b/dspace-api/src/main/java/org/dspace/content/packager/RoleDisseminator.java index f627779af8dc..15e9f1b14494 100644 --- a/dspace-api/src/main/java/org/dspace/content/packager/RoleDisseminator.java +++ b/dspace-api/src/main/java/org/dspace/content/packager/RoleDisseminator.java @@ -431,7 +431,7 @@ protected void writeEPerson(EPerson eperson, XMLStreamWriter writer, if (emitPassword) { PasswordHash password = ePersonService.getPasswordHash(eperson); - if (null != password) { + if (null != password && password.getHashString() != null) { writer.writeStartElement(PASSWORD_HASH); String algorithm = password.getAlgorithm(); diff --git a/dspace-api/src/main/java/org/dspace/content/service/BitstreamService.java b/dspace-api/src/main/java/org/dspace/content/service/BitstreamService.java index a4203bd51271..7c0084b6a225 100644 --- a/dspace-api/src/main/java/org/dspace/content/service/BitstreamService.java +++ b/dspace-api/src/main/java/org/dspace/content/service/BitstreamService.java @@ -14,8 +14,8 @@ import java.util.List; import java.util.Map; import java.util.UUID; -import javax.annotation.Nullable; +import jakarta.annotation.Nullable; import org.dspace.authorize.AuthorizeException; import org.dspace.content.Bitstream; import org.dspace.content.BitstreamFormat; diff --git a/dspace-api/src/main/java/org/dspace/content/service/CollectionService.java b/dspace-api/src/main/java/org/dspace/content/service/CollectionService.java index b597fb8477c8..cc90c905585d 100644 --- a/dspace-api/src/main/java/org/dspace/content/service/CollectionService.java +++ b/dspace-api/src/main/java/org/dspace/content/service/CollectionService.java @@ -15,7 +15,6 @@ import java.util.UUID; import org.dspace.authorize.AuthorizeException; -import org.dspace.browse.ItemCountException; import org.dspace.content.Bitstream; import org.dspace.content.Collection; import org.dspace.content.Community; @@ -584,9 +583,9 @@ public List findAllCollectionsByEntityType(Context context, String e /** * Returns total collection archived items * + * @param context DSpace context * @param collection Collection * @return total collection archived items - * @throws ItemCountException */ - int countArchivedItems(Collection collection) throws ItemCountException; + int countArchivedItems(Context context, Collection collection); } diff --git a/dspace-api/src/main/java/org/dspace/content/service/CommunityService.java b/dspace-api/src/main/java/org/dspace/content/service/CommunityService.java index c089bcec8df1..163baedf5ff2 100644 --- a/dspace-api/src/main/java/org/dspace/content/service/CommunityService.java +++ b/dspace-api/src/main/java/org/dspace/content/service/CommunityService.java @@ -14,7 +14,6 @@ import java.util.UUID; import org.dspace.authorize.AuthorizeException; -import org.dspace.browse.ItemCountException; import org.dspace.content.Bitstream; import org.dspace.content.Collection; import org.dspace.content.Community; @@ -297,9 +296,9 @@ public void removeSubcommunity(Context context, Community parentCommunity, Commu /** * Returns total community archived items * + * @param context DSpace context * @param community Community * @return total community archived items - * @throws ItemCountException */ - int countArchivedItems(Community community) throws ItemCountException; + int countArchivedItems(Context context, Community community); } diff --git a/dspace-api/src/main/java/org/dspace/content/service/FeedbackService.java b/dspace-api/src/main/java/org/dspace/content/service/FeedbackService.java index d21afd678000..7eac0ee61dc2 100644 --- a/dspace-api/src/main/java/org/dspace/content/service/FeedbackService.java +++ b/dspace-api/src/main/java/org/dspace/content/service/FeedbackService.java @@ -7,9 +7,9 @@ */ package org.dspace.content.service; import java.io.IOException; -import javax.mail.MessagingException; -import javax.servlet.http.HttpServletRequest; +import jakarta.mail.MessagingException; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.core.Context; /** diff --git a/dspace-api/src/main/java/org/dspace/content/service/ItemService.java b/dspace-api/src/main/java/org/dspace/content/service/ItemService.java index 5a89dc01976c..223b45db9538 100644 --- a/dspace-api/src/main/java/org/dspace/content/service/ItemService.java +++ b/dspace-api/src/main/java/org/dspace/content/service/ItemService.java @@ -84,6 +84,18 @@ public interface ItemService */ Item createTemplateItem(Context context, Collection collection) throws SQLException, AuthorizeException; + /** + * Populate the given item with all template item specified metadata. + * + * @param context DSpace context object + * @param collection Collection (parent) + * @param template if true, the item inherits all collection's template item metadata + * @param item item to populate with template item specified metadata + * @throws SQLException if database error + */ + public void populateWithTemplateItemMetadata (Context context, Collection collection, boolean template, Item item) + throws SQLException; + /** * Get all the items in the archive. Only items with the "in archive" flag * set are included. The order of the list is indeterminate. diff --git a/dspace-api/src/main/java/org/dspace/content/service/WorkspaceItemService.java b/dspace-api/src/main/java/org/dspace/content/service/WorkspaceItemService.java index c8df68e43498..8559bcc61402 100644 --- a/dspace-api/src/main/java/org/dspace/content/service/WorkspaceItemService.java +++ b/dspace-api/src/main/java/org/dspace/content/service/WorkspaceItemService.java @@ -56,6 +56,23 @@ public interface WorkspaceItemService extends InProgressSubmissionServicetrue, the workspace item starts as a copy + * of the collection's template item + * @param isNewVersion whether we are creating a new workspace item version of an existing item + * @return the newly created workspace item + * @throws SQLException if database error + * @throws AuthorizeException if authorization error + */ + public WorkspaceItem create(Context context, Collection collection, boolean template, boolean isNewVersion) + throws AuthorizeException, SQLException; + /** * Create a new workspace item, with a new ID. An Item is also created. The * submitter is the current user in the context. @@ -65,11 +82,13 @@ public WorkspaceItem create(Context context, Collection collection, boolean temp * @param uuid the preferred uuid of the new item (used if restoring an item and retaining old uuid) * @param template if true, the workspace item starts as a copy * of the collection's template item + * @param isNewVersion whether we are creating a new workspace item version of an existing item * @return the newly created workspace item * @throws SQLException if database error * @throws AuthorizeException if authorization error */ - public WorkspaceItem create(Context context, Collection collection, UUID uuid, boolean template) + public WorkspaceItem create(Context context, Collection collection, UUID uuid, boolean template, + boolean isNewVersion) throws AuthorizeException, SQLException; public WorkspaceItem create(Context c, WorkflowItem wfi) throws SQLException, AuthorizeException; diff --git a/dspace-api/src/main/java/org/dspace/contentreport/QueryOperator.java b/dspace-api/src/main/java/org/dspace/contentreport/QueryOperator.java index 1fb6e5fc0ffc..7cd8606f8348 100644 --- a/dspace-api/src/main/java/org/dspace/contentreport/QueryOperator.java +++ b/dspace-api/src/main/java/org/dspace/contentreport/QueryOperator.java @@ -8,13 +8,13 @@ package org.dspace.contentreport; import java.util.Arrays; -import javax.persistence.criteria.CriteriaBuilder; -import javax.persistence.criteria.Expression; -import javax.persistence.criteria.Path; -import javax.persistence.criteria.Predicate; import com.fasterxml.jackson.annotation.JsonCreator; import com.fasterxml.jackson.annotation.JsonProperty; +import jakarta.persistence.criteria.CriteriaBuilder; +import jakarta.persistence.criteria.Expression; +import jakarta.persistence.criteria.Path; +import jakarta.persistence.criteria.Predicate; import org.apache.commons.lang3.function.TriFunction; import org.dspace.content.MetadataValue; import org.dspace.content.MetadataValue_; diff --git a/dspace-api/src/main/java/org/dspace/core/AbstractHibernateDAO.java b/dspace-api/src/main/java/org/dspace/core/AbstractHibernateDAO.java index a01b412bb9e9..b60e0702ccc0 100644 --- a/dspace-api/src/main/java/org/dspace/core/AbstractHibernateDAO.java +++ b/dspace-api/src/main/java/org/dspace/core/AbstractHibernateDAO.java @@ -17,16 +17,16 @@ import java.util.Optional; import java.util.UUID; import java.util.stream.Stream; -import javax.persistence.Column; -import javax.persistence.Id; -import javax.persistence.Query; -import javax.persistence.criteria.CriteriaBuilder; -import javax.persistence.criteria.CriteriaQuery; -import javax.persistence.criteria.Expression; -import javax.persistence.criteria.Path; -import javax.persistence.criteria.Root; import com.google.common.collect.AbstractIterator; +import jakarta.persistence.Id; +import jakarta.persistence.Query; +import jakarta.persistence.Column; +import jakarta.persistence.criteria.CriteriaBuilder; +import jakarta.persistence.criteria.CriteriaQuery; +import jakarta.persistence.criteria.Expression; +import jakarta.persistence.criteria.Path; +import jakarta.persistence.criteria.Root; import org.apache.commons.collections.CollectionUtils; import org.hibernate.Session; @@ -516,4 +516,15 @@ public List findByX(Context context, Class clazz, Map equals, return executeCriteriaQuery(context, criteria, cacheable, maxResults, offset); } + /** + * Create a Query object from a CriteriaQuery + * @param context current Context + * @param criteriaQuery CriteriaQuery built via CriteriaBuilder + * @return corresponding Query + * @throws SQLException if error occurs + */ + public Query createQuery(Context context, CriteriaQuery criteriaQuery) throws SQLException { + return this.getHibernateSession(context).createQuery(criteriaQuery); + } + } diff --git a/dspace-api/src/main/java/org/dspace/core/AbstractHibernateDSODAO.java b/dspace-api/src/main/java/org/dspace/core/AbstractHibernateDSODAO.java index e9c6b95b7f05..d72a4d619003 100644 --- a/dspace-api/src/main/java/org/dspace/core/AbstractHibernateDSODAO.java +++ b/dspace-api/src/main/java/org/dspace/core/AbstractHibernateDSODAO.java @@ -10,10 +10,10 @@ import java.sql.SQLException; import java.util.Collection; import java.util.List; -import javax.persistence.criteria.CriteriaBuilder; -import javax.persistence.criteria.CriteriaQuery; -import javax.persistence.criteria.Root; +import jakarta.persistence.criteria.CriteriaBuilder; +import jakarta.persistence.criteria.CriteriaQuery; +import jakarta.persistence.criteria.Root; import org.apache.commons.collections.CollectionUtils; import org.apache.commons.collections.ListUtils; import org.apache.commons.lang3.StringUtils; diff --git a/dspace-api/src/main/java/org/dspace/core/Email.java b/dspace-api/src/main/java/org/dspace/core/Email.java index 8cbfd6e1deac..3d1ef2692604 100644 --- a/dspace-api/src/main/java/org/dspace/core/Email.java +++ b/dspace-api/src/main/java/org/dspace/core/Email.java @@ -24,23 +24,23 @@ import java.util.Enumeration; import java.util.List; import java.util.Properties; -import javax.activation.DataHandler; -import javax.activation.DataSource; -import javax.activation.FileDataSource; -import javax.mail.Address; -import javax.mail.BodyPart; -import javax.mail.Message; -import javax.mail.MessagingException; -import javax.mail.Multipart; -import javax.mail.Session; -import javax.mail.Transport; -import javax.mail.internet.ContentType; -import javax.mail.internet.InternetAddress; -import javax.mail.internet.MimeBodyPart; -import javax.mail.internet.MimeMessage; -import javax.mail.internet.MimeMultipart; -import javax.mail.internet.ParseException; +import jakarta.activation.DataHandler; +import jakarta.activation.DataSource; +import jakarta.activation.FileDataSource; +import jakarta.mail.Address; +import jakarta.mail.BodyPart; +import jakarta.mail.Message; +import jakarta.mail.MessagingException; +import jakarta.mail.Multipart; +import jakarta.mail.Session; +import jakarta.mail.Transport; +import jakarta.mail.internet.ContentType; +import jakarta.mail.internet.InternetAddress; +import jakarta.mail.internet.MimeBodyPart; +import jakarta.mail.internet.MimeMessage; +import jakarta.mail.internet.MimeMultipart; +import jakarta.mail.internet.ParseException; import org.apache.logging.log4j.LogManager; import org.apache.logging.log4j.Logger; import org.apache.velocity.Template; @@ -439,7 +439,7 @@ public void send() throws MessagingException, IOException { for (String headerName : templateHeaders) { String headerValue = (String) vctx.get(headerName); if ("subject".equalsIgnoreCase(headerName)) { - if (null != headerValue) { + if ((subject == null || subject.isEmpty()) && null != headerValue) { subject = headerValue; } } else if ("charset".equalsIgnoreCase(headerName)) { diff --git a/dspace-api/src/main/java/org/dspace/core/HibernateDBConnection.java b/dspace-api/src/main/java/org/dspace/core/HibernateDBConnection.java index c76e818ebffd..e8c0a3f6615a 100644 --- a/dspace-api/src/main/java/org/dspace/core/HibernateDBConnection.java +++ b/dspace-api/src/main/java/org/dspace/core/HibernateDBConnection.java @@ -28,7 +28,6 @@ import org.hibernate.SessionFactory; import org.hibernate.Transaction; import org.hibernate.engine.spi.SessionFactoryImplementor; -import org.hibernate.proxy.HibernateProxyHelper; import org.hibernate.resource.transaction.spi.TransactionStatus; import org.springframework.beans.factory.annotation.Autowired; import org.springframework.beans.factory.annotation.Qualifier; diff --git a/dspace-api/src/main/java/org/dspace/core/HibernateProxyHelper.java b/dspace-api/src/main/java/org/dspace/core/HibernateProxyHelper.java new file mode 100644 index 000000000000..22f91a48aa7f --- /dev/null +++ b/dspace-api/src/main/java/org/dspace/core/HibernateProxyHelper.java @@ -0,0 +1,39 @@ +/** + * The contents of this file are subject to the license and copyright + * detailed in the LICENSE and NOTICE files at the root of the source + * tree and available online at + * + * http://www.dspace.org/license/ + */ +package org.dspace.core; + +import org.hibernate.proxy.HibernateProxy; +import org.hibernate.proxy.LazyInitializer; + +/** + * Utility methods for working with Hibernate proxies. + * This class existed in Hibernate 5 but was removed from v6. + * https://github.com/hibernate/hibernate-orm/blob/5.6/hibernate-core/src/main/java/org/hibernate/proxy/HibernateProxyHelper.java + * We've copied it into DSpace to utilize the below utility method. + */ +public final class HibernateProxyHelper { + + /** + * Get the class of an instance or the underlying class + * of a proxy (without initializing the proxy!). It is + * almost always better to use the entity name! + */ + public static Class getClassWithoutInitializingProxy(Object object) { + if (object instanceof HibernateProxy) { + HibernateProxy proxy = (HibernateProxy) object; + LazyInitializer li = proxy.getHibernateLazyInitializer(); + return li.getPersistentClass(); + } else { + return object.getClass(); + } + } + + private HibernateProxyHelper() { + //cant instantiate + } +} diff --git a/dspace-api/src/main/java/org/dspace/core/I18nUtil.java b/dspace-api/src/main/java/org/dspace/core/I18nUtil.java index e32855e06819..58f0dd3d8b30 100644 --- a/dspace-api/src/main/java/org/dspace/core/I18nUtil.java +++ b/dspace-api/src/main/java/org/dspace/core/I18nUtil.java @@ -101,14 +101,14 @@ private static Locale makeLocale(String localeSpec) { */ public static Locale getEPersonLocale(EPerson ep) { if (ep == null) { - log.error("No EPerson specified, returning default locale"); + log.info("No EPerson specified, returning default locale"); return I18nUtil.getDefaultLocale(); } String lang = ep.getLanguage(); if (StringUtils.isBlank(lang)) { - log.error("No language specified for EPerson " + ep.getID()); + log.info("No language specified for EPerson " + ep.getID() + ", returning default locale"); return I18nUtil.getDefaultLocale(); } @@ -271,7 +271,7 @@ public static String getMessage(String key, Locale locale) { String message = messages.getString(key.trim()); return message; } catch (MissingResourceException e) { - log.error("'" + key + "' translation undefined in locale '" + log.warn("'" + key + "' translation undefined in locale '" + locale.toString() + "'"); return key; } diff --git a/dspace-api/src/main/java/org/dspace/core/LDN.java b/dspace-api/src/main/java/org/dspace/core/LDN.java index 283850eb1059..8ae5cddf5b4a 100644 --- a/dspace-api/src/main/java/org/dspace/core/LDN.java +++ b/dspace-api/src/main/java/org/dspace/core/LDN.java @@ -19,8 +19,8 @@ import java.util.Collections; import java.util.List; import java.util.Properties; -import javax.mail.MessagingException; +import jakarta.mail.MessagingException; import org.apache.commons.lang3.StringUtils; import org.apache.logging.log4j.LogManager; import org.apache.logging.log4j.Logger; diff --git a/dspace-api/src/main/java/org/dspace/core/LicenseServiceImpl.java b/dspace-api/src/main/java/org/dspace/core/LicenseServiceImpl.java index 80bc0beac83a..766e72e94125 100644 --- a/dspace-api/src/main/java/org/dspace/core/LicenseServiceImpl.java +++ b/dspace-api/src/main/java/org/dspace/core/LicenseServiceImpl.java @@ -17,8 +17,8 @@ import java.io.InputStreamReader; import java.io.OutputStreamWriter; import java.io.PrintWriter; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.apache.logging.log4j.LogManager; import org.apache.logging.log4j.Logger; import org.dspace.core.service.LicenseService; diff --git a/dspace-api/src/main/java/org/dspace/discovery/FullTextContentStreams.java b/dspace-api/src/main/java/org/dspace/discovery/FullTextContentStreams.java index 21468def6866..58abf18698a1 100644 --- a/dspace-api/src/main/java/org/dspace/discovery/FullTextContentStreams.java +++ b/dspace-api/src/main/java/org/dspace/discovery/FullTextContentStreams.java @@ -20,10 +20,10 @@ import java.util.Enumeration; import java.util.Iterator; import java.util.List; -import javax.annotation.Nullable; import com.google.common.base.Function; import com.google.common.collect.Iterables; +import jakarta.annotation.Nullable; import org.apache.commons.collections4.CollectionUtils; import org.apache.commons.lang3.StringUtils; import org.apache.logging.log4j.Logger; diff --git a/dspace-api/src/main/java/org/dspace/discovery/SolrSearchCore.java b/dspace-api/src/main/java/org/dspace/discovery/SolrSearchCore.java index f31feab6123a..6304f39a8ca9 100644 --- a/dspace-api/src/main/java/org/dspace/discovery/SolrSearchCore.java +++ b/dspace-api/src/main/java/org/dspace/discovery/SolrSearchCore.java @@ -8,8 +8,8 @@ package org.dspace.discovery; import java.io.IOException; -import javax.inject.Named; +import jakarta.inject.Named; import org.apache.commons.validator.routines.UrlValidator; import org.apache.logging.log4j.LogManager; import org.apache.logging.log4j.Logger; diff --git a/dspace-api/src/main/java/org/dspace/discovery/SolrServiceImpl.java b/dspace-api/src/main/java/org/dspace/discovery/SolrServiceImpl.java index 01a641778be3..f3a3885f5acc 100644 --- a/dspace-api/src/main/java/org/dspace/discovery/SolrServiceImpl.java +++ b/dspace-api/src/main/java/org/dspace/discovery/SolrServiceImpl.java @@ -34,8 +34,8 @@ import java.util.TimeZone; import java.util.UUID; import java.util.stream.Collectors; -import javax.mail.MessagingException; +import jakarta.mail.MessagingException; import org.apache.commons.collections4.CollectionUtils; import org.apache.commons.collections4.MapUtils; import org.apache.commons.collections4.Transformer; diff --git a/dspace-api/src/main/java/org/dspace/discovery/configuration/DiscoverySortConfiguration.java b/dspace-api/src/main/java/org/dspace/discovery/configuration/DiscoverySortConfiguration.java index b05f65bca592..08580213429a 100644 --- a/dspace-api/src/main/java/org/dspace/discovery/configuration/DiscoverySortConfiguration.java +++ b/dspace-api/src/main/java/org/dspace/discovery/configuration/DiscoverySortConfiguration.java @@ -11,8 +11,8 @@ import java.util.ArrayList; import java.util.List; -import javax.annotation.Nullable; +import jakarta.annotation.Nullable; import org.apache.commons.collections4.CollectionUtils; import org.apache.commons.lang3.StringUtils; diff --git a/dspace-api/src/main/java/org/dspace/eperson/AccountServiceImpl.java b/dspace-api/src/main/java/org/dspace/eperson/AccountServiceImpl.java index 8be6aac7e392..61941d6181e0 100644 --- a/dspace-api/src/main/java/org/dspace/eperson/AccountServiceImpl.java +++ b/dspace-api/src/main/java/org/dspace/eperson/AccountServiceImpl.java @@ -18,8 +18,8 @@ import java.util.function.BiConsumer; import java.util.function.Consumer; import java.util.stream.Stream; -import javax.mail.MessagingException; +import jakarta.mail.MessagingException; import org.apache.commons.collections4.CollectionUtils; import org.apache.commons.lang3.StringUtils; import org.apache.logging.log4j.LogManager; @@ -101,9 +101,15 @@ protected AccountServiceImpl() { * * @param context DSpace context * @param email Email address to send the registration email to +<<<<<<< HEAD * @throws java.sql.SQLException passed through. * @throws java.io.IOException passed through. * @throws javax.mail.MessagingException passed through. +======= + * @throws java.sql.SQLException passed through. + * @throws java.io.IOException passed through. + * @throws jakarta.mail.MessagingException passed through. +>>>>>>> dspace-8.0 * @throws org.dspace.authorize.AuthorizeException passed through. */ @Override @@ -132,9 +138,15 @@ public void sendRegistrationInfo(Context context, String email, List group * * @param context DSpace context * @param email Email address to send the forgot-password email to +<<<<<<< HEAD * @throws java.sql.SQLException passed through. * @throws java.io.IOException passed through. * @throws javax.mail.MessagingException passed through. +======= + * @throws java.sql.SQLException passed through. + * @throws java.io.IOException passed through. + * @throws jakarta.mail.MessagingException passed through. +>>>>>>> dspace-8.0 * @throws org.dspace.authorize.AuthorizeException passed through. */ @Override diff --git a/dspace-api/src/main/java/org/dspace/eperson/CaptchaServiceImpl.java b/dspace-api/src/main/java/org/dspace/eperson/CaptchaServiceImpl.java index 0ab66aea5c2e..b213675b163e 100644 --- a/dspace-api/src/main/java/org/dspace/eperson/CaptchaServiceImpl.java +++ b/dspace-api/src/main/java/org/dspace/eperson/CaptchaServiceImpl.java @@ -14,9 +14,9 @@ import java.util.List; import java.util.Objects; import java.util.regex.Pattern; -import javax.annotation.PostConstruct; import com.fasterxml.jackson.databind.ObjectMapper; +import jakarta.annotation.PostConstruct; import org.apache.http.HttpResponse; import org.apache.http.NameValuePair; import org.apache.http.client.HttpClient; diff --git a/dspace-api/src/main/java/org/dspace/eperson/EPerson.java b/dspace-api/src/main/java/org/dspace/eperson/EPerson.java index 9a8e714a323f..1b12978ae8a3 100644 --- a/dspace-api/src/main/java/org/dspace/eperson/EPerson.java +++ b/dspace-api/src/main/java/org/dspace/eperson/EPerson.java @@ -11,27 +11,25 @@ import java.util.ArrayList; import java.util.Date; import java.util.List; -import javax.persistence.Cacheable; -import javax.persistence.Column; -import javax.persistence.Entity; -import javax.persistence.FetchType; -import javax.persistence.ManyToMany; -import javax.persistence.Table; -import javax.persistence.Temporal; -import javax.persistence.TemporalType; -import javax.persistence.Transient; +import jakarta.persistence.Column; +import jakarta.persistence.Entity; +import jakarta.persistence.FetchType; +import jakarta.persistence.ManyToMany; +import jakarta.persistence.Table; +import jakarta.persistence.Temporal; +import jakarta.persistence.TemporalType; +import jakarta.persistence.Transient; import org.apache.commons.lang3.BooleanUtils; import org.apache.commons.lang3.StringUtils; -import org.dspace.content.DSpaceObject; +import org.dspace.content.CacheableDSpaceObject; import org.dspace.content.DSpaceObjectLegacySupport; import org.dspace.content.Item; import org.dspace.core.Constants; import org.dspace.core.Context; +import org.dspace.core.HibernateProxyHelper; import org.dspace.eperson.factory.EPersonServiceFactory; import org.dspace.eperson.service.EPersonService; -import org.hibernate.annotations.CacheConcurrencyStrategy; -import org.hibernate.proxy.HibernateProxyHelper; /** * Class representing an e-person. @@ -39,10 +37,8 @@ * @author David Stuve */ @Entity -@Cacheable -@org.hibernate.annotations.Cache(usage = CacheConcurrencyStrategy.NONSTRICT_READ_WRITE, include = "non-lazy") @Table(name = "eperson") -public class EPerson extends DSpaceObject implements DSpaceObjectLegacySupport { +public class EPerson extends CacheableDSpaceObject implements DSpaceObjectLegacySupport { @Column(name = "eperson_id", insertable = false, updatable = false) private Integer legacyId; diff --git a/dspace-api/src/main/java/org/dspace/eperson/EPersonConsumer.java b/dspace-api/src/main/java/org/dspace/eperson/EPersonConsumer.java index feefe65717df..8679d74b2421 100644 --- a/dspace-api/src/main/java/org/dspace/eperson/EPersonConsumer.java +++ b/dspace-api/src/main/java/org/dspace/eperson/EPersonConsumer.java @@ -10,8 +10,8 @@ import java.io.IOException; import java.util.Date; import java.util.UUID; -import javax.mail.MessagingException; +import jakarta.mail.MessagingException; import org.apache.commons.lang3.StringUtils; import org.apache.logging.log4j.Logger; import org.dspace.core.Constants; diff --git a/dspace-api/src/main/java/org/dspace/eperson/Group.java b/dspace-api/src/main/java/org/dspace/eperson/Group.java index 9cf810164425..3bb601649466 100644 --- a/dspace-api/src/main/java/org/dspace/eperson/Group.java +++ b/dspace-api/src/main/java/org/dspace/eperson/Group.java @@ -10,23 +10,21 @@ import java.sql.SQLException; import java.util.ArrayList; import java.util.List; -import javax.persistence.Cacheable; -import javax.persistence.Column; -import javax.persistence.Entity; -import javax.persistence.FetchType; -import javax.persistence.JoinColumn; -import javax.persistence.JoinTable; -import javax.persistence.ManyToMany; -import javax.persistence.Table; -import javax.persistence.Transient; +import jakarta.persistence.Column; +import jakarta.persistence.Entity; +import jakarta.persistence.FetchType; +import jakarta.persistence.JoinColumn; +import jakarta.persistence.JoinTable; +import jakarta.persistence.ManyToMany; +import jakarta.persistence.Table; +import jakarta.persistence.Transient; import org.apache.commons.lang3.StringUtils; -import org.dspace.content.DSpaceObject; +import org.dspace.content.CacheableDSpaceObject; import org.dspace.content.DSpaceObjectLegacySupport; import org.dspace.core.Constants; import org.dspace.core.Context; -import org.hibernate.annotations.CacheConcurrencyStrategy; -import org.hibernate.proxy.HibernateProxyHelper; +import org.dspace.core.HibernateProxyHelper; /** * Class representing a group of e-people. @@ -34,10 +32,8 @@ * @author David Stuve */ @Entity -@Cacheable -@org.hibernate.annotations.Cache(usage = CacheConcurrencyStrategy.NONSTRICT_READ_WRITE, include = "non-lazy") @Table(name = "epersongroup") -public class Group extends DSpaceObject implements DSpaceObjectLegacySupport { +public class Group extends CacheableDSpaceObject implements DSpaceObjectLegacySupport { @Transient public static final String ANONYMOUS = "Anonymous"; diff --git a/dspace-api/src/main/java/org/dspace/eperson/Group2GroupCache.java b/dspace-api/src/main/java/org/dspace/eperson/Group2GroupCache.java index 09bdf34d4cad..a1c12371f5ff 100644 --- a/dspace-api/src/main/java/org/dspace/eperson/Group2GroupCache.java +++ b/dspace-api/src/main/java/org/dspace/eperson/Group2GroupCache.java @@ -8,14 +8,14 @@ package org.dspace.eperson; import java.io.Serializable; -import javax.persistence.Entity; -import javax.persistence.FetchType; -import javax.persistence.Id; -import javax.persistence.JoinColumn; -import javax.persistence.ManyToOne; -import javax.persistence.Table; -import org.hibernate.proxy.HibernateProxyHelper; +import jakarta.persistence.Entity; +import jakarta.persistence.FetchType; +import jakarta.persistence.Id; +import jakarta.persistence.JoinColumn; +import jakarta.persistence.ManyToOne; +import jakarta.persistence.Table; +import org.dspace.core.HibernateProxyHelper; /** * Database entity representation of the group2groupcache table diff --git a/dspace-api/src/main/java/org/dspace/eperson/RegistrationData.java b/dspace-api/src/main/java/org/dspace/eperson/RegistrationData.java index 2c0e1abb8238..5b4bd9fb9afb 100644 --- a/dspace-api/src/main/java/org/dspace/eperson/RegistrationData.java +++ b/dspace-api/src/main/java/org/dspace/eperson/RegistrationData.java @@ -12,24 +12,24 @@ import java.util.List; import java.util.SortedSet; import java.util.TreeSet; -import javax.persistence.CascadeType; -import javax.persistence.Column; -import javax.persistence.Entity; -import javax.persistence.EnumType; -import javax.persistence.Enumerated; -import javax.persistence.FetchType; -import javax.persistence.GeneratedValue; -import javax.persistence.GenerationType; -import javax.persistence.Id; -import javax.persistence.JoinColumn; -import javax.persistence.JoinTable; -import javax.persistence.ManyToMany; -import javax.persistence.OneToMany; -import javax.persistence.SequenceGenerator; -import javax.persistence.Table; -import javax.persistence.Temporal; -import javax.persistence.TemporalType; +import jakarta.persistence.Column; +import jakarta.persistence.CascadeType; +import jakarta.persistence.Entity; +import jakarta.persistence.EnumType; +import jakarta.persistence.Enumerated; +import jakarta.persistence.FetchType; +import jakarta.persistence.GeneratedValue; +import jakarta.persistence.GenerationType; +import jakarta.persistence.Id; +import jakarta.persistence.JoinColumn; +import jakarta.persistence.JoinTable; +import jakarta.persistence.SequenceGenerator; +import jakarta.persistence.ManyToMany; +import jakarta.persistence.OneToMany; +import jakarta.persistence.Table; +import jakarta.persistence.Temporal; +import jakarta.persistence.TemporalType; import org.dspace.core.Context; import org.dspace.core.ReloadableEntity; import org.hibernate.annotations.SortNatural; diff --git a/dspace-api/src/main/java/org/dspace/eperson/Subscription.java b/dspace-api/src/main/java/org/dspace/eperson/Subscription.java index 5db63740f477..0f473a5a750d 100644 --- a/dspace-api/src/main/java/org/dspace/eperson/Subscription.java +++ b/dspace-api/src/main/java/org/dspace/eperson/Subscription.java @@ -9,19 +9,19 @@ import java.util.ArrayList; import java.util.List; -import javax.persistence.CascadeType; -import javax.persistence.Column; -import javax.persistence.Entity; -import javax.persistence.FetchType; -import javax.persistence.GeneratedValue; -import javax.persistence.GenerationType; -import javax.persistence.Id; -import javax.persistence.JoinColumn; -import javax.persistence.ManyToOne; -import javax.persistence.OneToMany; -import javax.persistence.SequenceGenerator; -import javax.persistence.Table; +import jakarta.persistence.CascadeType; +import jakarta.persistence.Column; +import jakarta.persistence.Entity; +import jakarta.persistence.FetchType; +import jakarta.persistence.GeneratedValue; +import jakarta.persistence.GenerationType; +import jakarta.persistence.Id; +import jakarta.persistence.JoinColumn; +import jakarta.persistence.ManyToOne; +import jakarta.persistence.OneToMany; +import jakarta.persistence.SequenceGenerator; +import jakarta.persistence.Table; import org.dspace.content.DSpaceObject; import org.dspace.core.Context; import org.dspace.core.ReloadableEntity; diff --git a/dspace-api/src/main/java/org/dspace/eperson/SubscriptionParameter.java b/dspace-api/src/main/java/org/dspace/eperson/SubscriptionParameter.java index 7526535d7fcd..8d372966b10a 100644 --- a/dspace-api/src/main/java/org/dspace/eperson/SubscriptionParameter.java +++ b/dspace-api/src/main/java/org/dspace/eperson/SubscriptionParameter.java @@ -7,16 +7,15 @@ */ package org.dspace.eperson; -import javax.persistence.Column; -import javax.persistence.Entity; -import javax.persistence.GeneratedValue; -import javax.persistence.GenerationType; -import javax.persistence.Id; -import javax.persistence.JoinColumn; -import javax.persistence.ManyToOne; -import javax.persistence.SequenceGenerator; -import javax.persistence.Table; - +import jakarta.persistence.Column; +import jakarta.persistence.Entity; +import jakarta.persistence.GeneratedValue; +import jakarta.persistence.GenerationType; +import jakarta.persistence.Id; +import jakarta.persistence.JoinColumn; +import jakarta.persistence.ManyToOne; +import jakarta.persistence.SequenceGenerator; +import jakarta.persistence.Table; import org.dspace.core.ReloadableEntity; /** diff --git a/dspace-api/src/main/java/org/dspace/eperson/dao/impl/EPersonDAOImpl.java b/dspace-api/src/main/java/org/dspace/eperson/dao/impl/EPersonDAOImpl.java index 87d6c5869b09..7d8e0720c45f 100644 --- a/dspace-api/src/main/java/org/dspace/eperson/dao/impl/EPersonDAOImpl.java +++ b/dspace-api/src/main/java/org/dspace/eperson/dao/impl/EPersonDAOImpl.java @@ -15,11 +15,11 @@ import java.util.List; import java.util.Set; import java.util.UUID; -import javax.persistence.Query; -import javax.persistence.criteria.CriteriaBuilder; -import javax.persistence.criteria.CriteriaQuery; -import javax.persistence.criteria.Root; +import jakarta.persistence.Query; +import jakarta.persistence.criteria.CriteriaBuilder; +import jakarta.persistence.criteria.CriteriaQuery; +import jakarta.persistence.criteria.Root; import org.apache.commons.collections.CollectionUtils; import org.apache.commons.collections.ListUtils; import org.apache.commons.lang3.StringUtils; diff --git a/dspace-api/src/main/java/org/dspace/eperson/dao/impl/Group2GroupCacheDAOImpl.java b/dspace-api/src/main/java/org/dspace/eperson/dao/impl/Group2GroupCacheDAOImpl.java index 83fb48aaf03d..1cd359188ca3 100644 --- a/dspace-api/src/main/java/org/dspace/eperson/dao/impl/Group2GroupCacheDAOImpl.java +++ b/dspace-api/src/main/java/org/dspace/eperson/dao/impl/Group2GroupCacheDAOImpl.java @@ -10,12 +10,12 @@ import java.sql.SQLException; import java.util.LinkedList; import java.util.List; -import javax.persistence.Query; -import javax.persistence.criteria.CriteriaBuilder; -import javax.persistence.criteria.CriteriaQuery; -import javax.persistence.criteria.Predicate; -import javax.persistence.criteria.Root; +import jakarta.persistence.Query; +import jakarta.persistence.criteria.CriteriaBuilder; +import jakarta.persistence.criteria.CriteriaQuery; +import jakarta.persistence.criteria.Predicate; +import jakarta.persistence.criteria.Root; import org.dspace.core.AbstractHibernateDAO; import org.dspace.core.Context; import org.dspace.eperson.Group; diff --git a/dspace-api/src/main/java/org/dspace/eperson/dao/impl/GroupDAOImpl.java b/dspace-api/src/main/java/org/dspace/eperson/dao/impl/GroupDAOImpl.java index 747665860dce..9a638fefba12 100644 --- a/dspace-api/src/main/java/org/dspace/eperson/dao/impl/GroupDAOImpl.java +++ b/dspace-api/src/main/java/org/dspace/eperson/dao/impl/GroupDAOImpl.java @@ -11,8 +11,8 @@ import java.util.Collections; import java.util.List; import java.util.UUID; -import javax.persistence.Query; +import jakarta.persistence.Query; import org.apache.commons.lang3.StringUtils; import org.apache.commons.lang3.tuple.Pair; import org.dspace.content.MetadataField; diff --git a/dspace-api/src/main/java/org/dspace/eperson/dao/impl/RegistrationDataDAOImpl.java b/dspace-api/src/main/java/org/dspace/eperson/dao/impl/RegistrationDataDAOImpl.java index 2dd023580dc8..7dd39742654f 100644 --- a/dspace-api/src/main/java/org/dspace/eperson/dao/impl/RegistrationDataDAOImpl.java +++ b/dspace-api/src/main/java/org/dspace/eperson/dao/impl/RegistrationDataDAOImpl.java @@ -9,12 +9,12 @@ import java.sql.SQLException; import java.util.Date; -import javax.persistence.Query; -import javax.persistence.criteria.CriteriaBuilder; -import javax.persistence.criteria.CriteriaDelete; -import javax.persistence.criteria.CriteriaQuery; -import javax.persistence.criteria.Root; +import jakarta.persistence.Query; +import jakarta.persistence.criteria.CriteriaBuilder; +import jakarta.persistence.criteria.CriteriaDelete; +import jakarta.persistence.criteria.CriteriaQuery; +import jakarta.persistence.criteria.Root; import org.dspace.core.AbstractHibernateDAO; import org.dspace.core.Context; import org.dspace.eperson.RegistrationData; diff --git a/dspace-api/src/main/java/org/dspace/eperson/dao/impl/SubscriptionDAOImpl.java b/dspace-api/src/main/java/org/dspace/eperson/dao/impl/SubscriptionDAOImpl.java index 6c36211f310c..d3d4748728ce 100644 --- a/dspace-api/src/main/java/org/dspace/eperson/dao/impl/SubscriptionDAOImpl.java +++ b/dspace-api/src/main/java/org/dspace/eperson/dao/impl/SubscriptionDAOImpl.java @@ -11,12 +11,12 @@ import java.util.ArrayList; import java.util.LinkedList; import java.util.List; -import javax.persistence.Query; -import javax.persistence.criteria.CriteriaBuilder; -import javax.persistence.criteria.CriteriaQuery; -import javax.persistence.criteria.Join; -import javax.persistence.criteria.Root; +import jakarta.persistence.Query; +import jakarta.persistence.criteria.CriteriaBuilder; +import jakarta.persistence.criteria.CriteriaQuery; +import jakarta.persistence.criteria.Join; +import jakarta.persistence.criteria.Root; import org.dspace.content.DSpaceObject; import org.dspace.core.AbstractHibernateDAO; import org.dspace.core.Context; @@ -44,11 +44,12 @@ protected SubscriptionDAOImpl() { public List findByEPerson(Context context, EPerson eperson, Integer limit, Integer offset) throws SQLException { CriteriaBuilder criteriaBuilder = getCriteriaBuilder(context); - javax.persistence.criteria.CriteriaQuery criteriaQuery = getCriteriaQuery(criteriaBuilder, Subscription.class); + jakarta.persistence.criteria.CriteriaQuery criteriaQuery = + getCriteriaQuery(criteriaBuilder, Subscription.class); Root subscriptionRoot = criteriaQuery.from(Subscription.class); criteriaQuery.select(subscriptionRoot); criteriaQuery.where(criteriaBuilder.equal(subscriptionRoot.get(Subscription_.ePerson), eperson)); - List orderList = new LinkedList<>(); + List orderList = new LinkedList<>(); orderList.add(criteriaBuilder.asc(subscriptionRoot.get(Subscription_.dSpaceObject))); criteriaQuery.orderBy(orderList); return list(context, criteriaQuery, false, Subscription.class, limit, offset); @@ -59,7 +60,7 @@ public List findByEPersonAndDso(Context context, EPerson eperson, DSpaceObject dSpaceObject, Integer limit, Integer offset) throws SQLException { CriteriaBuilder criteriaBuilder = getCriteriaBuilder(context); - javax.persistence.criteria.CriteriaQuery criteriaQuery = + jakarta.persistence.criteria.CriteriaQuery criteriaQuery = getCriteriaQuery(criteriaBuilder, Subscription.class); Root subscriptionRoot = criteriaQuery.from(Subscription.class); criteriaQuery.select(subscriptionRoot); @@ -67,7 +68,7 @@ public List findByEPersonAndDso(Context context, EPerson eperson, subscriptionRoot.get(Subscription_.ePerson), eperson), criteriaBuilder.equal(subscriptionRoot.get(Subscription_.dSpaceObject), dSpaceObject) )); - List orderList = new LinkedList<>(); + List orderList = new LinkedList<>(); orderList.add(criteriaBuilder.asc(subscriptionRoot.get(Subscription_.dSpaceObject))); criteriaQuery.orderBy(orderList); return list(context, criteriaQuery, false, Subscription.class, limit, offset); @@ -104,7 +105,7 @@ public void deleteByDSOAndEPerson(Context context, DSpaceObject dSpaceObject, EP public List findAllOrderedByIDAndResourceType(Context context, String resourceType, Integer limit, Integer offset) throws SQLException { String hqlQuery = "select s from Subscription s join %s dso " + - "ON dso.id = s.dSpaceObject ORDER BY subscription_id"; + "ON dso = s.dSpaceObject ORDER BY s.id"; if (resourceType != null) { hqlQuery = String.format(hqlQuery, resourceType); } @@ -125,7 +126,7 @@ public List findAllOrderedByDSO(Context context, Integer limit, In CriteriaQuery criteriaQuery = getCriteriaQuery(criteriaBuilder, Subscription.class); Root subscriptionRoot = criteriaQuery.from(Subscription.class); criteriaQuery.select(subscriptionRoot); - List orderList = new LinkedList<>(); + List orderList = new LinkedList<>(); orderList.add(criteriaBuilder.asc(subscriptionRoot.get(Subscription_.dSpaceObject))); criteriaQuery.orderBy(orderList); return list(context, criteriaQuery, false, Subscription.class, limit, offset); @@ -145,7 +146,7 @@ public List findAllSubscriptionsBySubscriptionTypeAndFrequency(Con criteriaBuilder.equal(childJoin.get(SubscriptionParameter_.name), "frequency"), criteriaBuilder.equal(childJoin.get(SubscriptionParameter_.value), frequencyValue) )); - List orderList = new ArrayList<>(1); + List orderList = new ArrayList<>(1); orderList.add(criteriaBuilder.asc(subscriptionRoot.get(Subscription_.ePerson))); orderList.add(criteriaBuilder.asc(subscriptionRoot.get(Subscription_.id))); criteriaQuery.orderBy(orderList); diff --git a/dspace-api/src/main/java/org/dspace/eperson/service/AccountService.java b/dspace-api/src/main/java/org/dspace/eperson/service/AccountService.java index ebfa7fc89d91..12e359e9291e 100644 --- a/dspace-api/src/main/java/org/dspace/eperson/service/AccountService.java +++ b/dspace-api/src/main/java/org/dspace/eperson/service/AccountService.java @@ -11,8 +11,8 @@ import java.sql.SQLException; import java.util.List; import java.util.UUID; -import javax.mail.MessagingException; +import jakarta.mail.MessagingException; import org.dspace.authorize.AuthorizeException; import org.dspace.core.Context; import org.dspace.eperson.EPerson; diff --git a/dspace-api/src/main/java/org/dspace/eperson/service/EPersonService.java b/dspace-api/src/main/java/org/dspace/eperson/service/EPersonService.java index ab12765ee960..9138e9a67ab8 100644 --- a/dspace-api/src/main/java/org/dspace/eperson/service/EPersonService.java +++ b/dspace-api/src/main/java/org/dspace/eperson/service/EPersonService.java @@ -13,8 +13,8 @@ import java.util.Date; import java.util.List; import java.util.Set; -import javax.validation.constraints.NotNull; +import jakarta.validation.constraints.NotNull; import org.dspace.authorize.AuthorizeException; import org.dspace.content.Item; import org.dspace.content.MetadataFieldName; diff --git a/dspace-api/src/main/java/org/dspace/external/OpenaireRestConnector.java b/dspace-api/src/main/java/org/dspace/external/OpenaireRestConnector.java index c96fad1de01c..27688df6c758 100644 --- a/dspace-api/src/main/java/org/dspace/external/OpenaireRestConnector.java +++ b/dspace-api/src/main/java/org/dspace/external/OpenaireRestConnector.java @@ -16,7 +16,6 @@ import java.util.ArrayList; import java.util.Base64; import java.util.List; -import javax.xml.bind.JAXBException; import eu.openaire.jaxb.helper.OpenAIREHandler; import eu.openaire.jaxb.model.Response; @@ -278,7 +277,7 @@ public Response search(String path, int page, int size) { if (result != null) { try { return OpenAIREHandler.unmarshal(result); - } catch (JAXBException e) { + } catch (Exception e) { log.error("Error extracting result from request: " + queryString); getGotError(e, path); } diff --git a/dspace-api/src/main/java/org/dspace/external/model/ExternalDataObject.java b/dspace-api/src/main/java/org/dspace/external/model/ExternalDataObject.java index 44ad6a70953e..941c000731cf 100644 --- a/dspace-api/src/main/java/org/dspace/external/model/ExternalDataObject.java +++ b/dspace-api/src/main/java/org/dspace/external/model/ExternalDataObject.java @@ -10,7 +10,10 @@ import java.util.ArrayList; import java.util.List; import java.util.UUID; +import java.util.Objects; +import org.apache.logging.log4j.LogManager; +import org.apache.logging.log4j.Logger; import org.dspace.content.dto.MetadataValueDTO; /** @@ -40,6 +43,7 @@ public class ExternalDataObject { private String displayValue; private List matchUUIDs; + private Logger log = LogManager.getLogger(ExternalDataObject.class); /** * Default constructor @@ -158,4 +162,62 @@ public void setMatchUUIDs(List matchUUIDs) { public boolean isDuplicated() { return !matchUUIDs.isEmpty(); } + /** + * Sort metadata before printing, to help with comparison by eye + * @return + */ + @Override + public String toString() { + List thisMetadata = new ArrayList<>(this.metadata); + thisMetadata.sort(MetadataValueDTO.comparator()); + return "ExternalDataObject{" + + "id='" + id + '\'' + + ", value='" + value + '\'' + + ", source='" + source + '\'' + + ", displayValue='" + displayValue + '\'' + + ", metadata=" + thisMetadata + + '}'; + } + + /** + * Equality test for ExternalDataObject takes into account the fact that we might have + * lists of metadata values which are identical except for sort order, so we sort and compare these + * using a custom comparator. + * @param o The other object ("that") with which to compare this object ("this") + * @return true if objects are identical, false if not + */ + @Override + public boolean equals(Object o) { + if (this == o) { + return true; + } + if (o == null || getClass() != o.getClass()) { + return false; + } + ExternalDataObject that = (ExternalDataObject) o; + // Compare *sorted* lists + List thisMetadata = new ArrayList<>(this.metadata); + List thatMetadata = new ArrayList<>(that.metadata); + // Sort both lists using our custom comparator + thisMetadata.sort(MetadataValueDTO.comparator()); + thatMetadata.sort(MetadataValueDTO.comparator()); + + // Return straight comparisons of basic member variables + return Objects.equals(id, that.id) && + Objects.equals(value, that.value) && + Objects.equals(source, that.source) && + Objects.equals(displayValue, that.displayValue) && + // Compare the sorted lists rather than the raw stored metadata + Objects.equals(thisMetadata, thatMetadata); + } + + /** + * Explicit override of Object hashCode() + * @return + */ + @Override + public int hashCode() { + return Objects.hash(id, value, source, metadata, displayValue); + } + } diff --git a/dspace-api/src/main/java/org/dspace/external/provider/orcid/xml/Converter.java b/dspace-api/src/main/java/org/dspace/external/provider/orcid/xml/Converter.java index 756b8654f285..578db6c56749 100644 --- a/dspace-api/src/main/java/org/dspace/external/provider/orcid/xml/Converter.java +++ b/dspace-api/src/main/java/org/dspace/external/provider/orcid/xml/Converter.java @@ -9,13 +9,13 @@ import java.io.InputStream; import java.net.URISyntaxException; -import javax.xml.bind.JAXBContext; -import javax.xml.bind.JAXBException; -import javax.xml.bind.Unmarshaller; import javax.xml.stream.XMLInputFactory; import javax.xml.stream.XMLStreamException; import javax.xml.stream.XMLStreamReader; +import jakarta.xml.bind.JAXBContext; +import jakarta.xml.bind.JAXBException; +import jakarta.xml.bind.Unmarshaller; import org.xml.sax.SAXException; /** diff --git a/dspace-api/src/main/java/org/dspace/google/GoogleAsyncEventListener.java b/dspace-api/src/main/java/org/dspace/google/GoogleAsyncEventListener.java index c1c59acf4a63..68c492d1a9a0 100644 --- a/dspace-api/src/main/java/org/dspace/google/GoogleAsyncEventListener.java +++ b/dspace-api/src/main/java/org/dspace/google/GoogleAsyncEventListener.java @@ -13,9 +13,9 @@ import java.util.List; import java.util.UUID; import java.util.stream.Collectors; -import javax.annotation.PostConstruct; -import javax.servlet.http.HttpServletRequest; +import jakarta.annotation.PostConstruct; +import jakarta.servlet.http.HttpServletRequest; import org.apache.commons.collections.Buffer; import org.apache.commons.collections.BufferUtils; import org.apache.commons.collections.buffer.CircularFifoBuffer; diff --git a/dspace-api/src/main/java/org/dspace/google/GoogleRecorderEventListener.java b/dspace-api/src/main/java/org/dspace/google/GoogleRecorderEventListener.java index 4159661b1ced..fb4e9c04de5b 100644 --- a/dspace-api/src/main/java/org/dspace/google/GoogleRecorderEventListener.java +++ b/dspace-api/src/main/java/org/dspace/google/GoogleRecorderEventListener.java @@ -13,8 +13,8 @@ import java.util.ArrayList; import java.util.List; import java.util.UUID; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.apache.commons.lang3.StringUtils; import org.apache.http.NameValuePair; import org.apache.http.client.entity.UrlEncodedFormEntity; diff --git a/dspace-api/src/main/java/org/dspace/handle/Handle.java b/dspace-api/src/main/java/org/dspace/handle/Handle.java index c35511353a3a..29182ad56c89 100644 --- a/dspace-api/src/main/java/org/dspace/handle/Handle.java +++ b/dspace-api/src/main/java/org/dspace/handle/Handle.java @@ -7,17 +7,16 @@ */ package org.dspace.handle; -import javax.persistence.Column; -import javax.persistence.Entity; -import javax.persistence.FetchType; -import javax.persistence.GeneratedValue; -import javax.persistence.GenerationType; -import javax.persistence.Id; -import javax.persistence.JoinColumn; -import javax.persistence.ManyToOne; -import javax.persistence.SequenceGenerator; -import javax.persistence.Table; - +import jakarta.persistence.Column; +import jakarta.persistence.Entity; +import jakarta.persistence.FetchType; +import jakarta.persistence.GeneratedValue; +import jakarta.persistence.GenerationType; +import jakarta.persistence.Id; +import jakarta.persistence.JoinColumn; +import jakarta.persistence.ManyToOne; +import jakarta.persistence.SequenceGenerator; +import jakarta.persistence.Table; import org.apache.commons.lang3.builder.EqualsBuilder; import org.apache.commons.lang3.builder.HashCodeBuilder; import org.dspace.content.DSpaceObject; diff --git a/dspace-api/src/main/java/org/dspace/handle/dao/impl/HandleDAOImpl.java b/dspace-api/src/main/java/org/dspace/handle/dao/impl/HandleDAOImpl.java index 71bb798ae387..495f1f05a446 100644 --- a/dspace-api/src/main/java/org/dspace/handle/dao/impl/HandleDAOImpl.java +++ b/dspace-api/src/main/java/org/dspace/handle/dao/impl/HandleDAOImpl.java @@ -13,11 +13,11 @@ import java.sql.SQLException; import java.util.Collections; import java.util.List; -import javax.persistence.Query; -import javax.persistence.criteria.CriteriaBuilder; -import javax.persistence.criteria.CriteriaQuery; -import javax.persistence.criteria.Root; +import jakarta.persistence.Query; +import jakarta.persistence.criteria.CriteriaBuilder; +import jakarta.persistence.criteria.CriteriaQuery; +import jakarta.persistence.criteria.Root; import org.dspace.content.DSpaceObject; import org.dspace.core.AbstractHibernateDAO; import org.dspace.core.Context; @@ -91,10 +91,9 @@ public List findByPrefix(Context context, String prefix) throws SQLExcep @Override public long countHandlesByPrefix(Context context, String prefix) throws SQLException { CriteriaBuilder criteriaBuilder = getCriteriaBuilder(context); - CriteriaQuery criteriaQuery = getCriteriaQuery(criteriaBuilder, Handle.class); + CriteriaQuery criteriaQuery = criteriaBuilder.createQuery(Long.class); Root handleRoot = criteriaQuery.from(Handle.class); - criteriaQuery.select(handleRoot); criteriaQuery.where(criteriaBuilder.like(handleRoot.get(Handle_.handle), prefix + "%")); return countLong(context, criteriaQuery, criteriaBuilder, handleRoot); } @@ -137,7 +136,7 @@ public Long execute(Connection connection) throws SQLException { // Find the next value in our sequence (based on DB dialect) try (PreparedStatement preparedStatement = connection - .prepareStatement(dialect.getSequenceNextValString(HANDLE_SEQUENCE))) { + .prepareStatement("SELECT nextval('" + HANDLE_SEQUENCE + "')")) { // Execute query and return results try (ResultSet resultSet = preparedStatement.executeQuery()) { if (resultSet.next()) { diff --git a/dspace-api/src/main/java/org/dspace/harvest/HarvestedCollection.java b/dspace-api/src/main/java/org/dspace/harvest/HarvestedCollection.java index f4204edcb49a..2b4671c9ba26 100644 --- a/dspace-api/src/main/java/org/dspace/harvest/HarvestedCollection.java +++ b/dspace-api/src/main/java/org/dspace/harvest/HarvestedCollection.java @@ -8,20 +8,20 @@ package org.dspace.harvest; import java.util.Date; -import javax.persistence.Column; -import javax.persistence.Entity; -import javax.persistence.FetchType; -import javax.persistence.GeneratedValue; -import javax.persistence.GenerationType; -import javax.persistence.Id; -import javax.persistence.JoinColumn; -import javax.persistence.OneToOne; -import javax.persistence.SequenceGenerator; -import javax.persistence.Table; -import javax.persistence.Temporal; -import javax.persistence.TemporalType; -import javax.persistence.Transient; +import jakarta.persistence.Column; +import jakarta.persistence.Entity; +import jakarta.persistence.FetchType; +import jakarta.persistence.GeneratedValue; +import jakarta.persistence.GenerationType; +import jakarta.persistence.Id; +import jakarta.persistence.JoinColumn; +import jakarta.persistence.OneToOne; +import jakarta.persistence.SequenceGenerator; +import jakarta.persistence.Table; +import jakarta.persistence.Temporal; +import jakarta.persistence.TemporalType; +import jakarta.persistence.Transient; import org.dspace.content.Collection; import org.dspace.core.Context; import org.dspace.core.ReloadableEntity; diff --git a/dspace-api/src/main/java/org/dspace/harvest/HarvestedItem.java b/dspace-api/src/main/java/org/dspace/harvest/HarvestedItem.java index b076420ad20c..8299a3c45dcb 100644 --- a/dspace-api/src/main/java/org/dspace/harvest/HarvestedItem.java +++ b/dspace-api/src/main/java/org/dspace/harvest/HarvestedItem.java @@ -8,19 +8,19 @@ package org.dspace.harvest; import java.util.Date; -import javax.persistence.Column; -import javax.persistence.Entity; -import javax.persistence.FetchType; -import javax.persistence.GeneratedValue; -import javax.persistence.GenerationType; -import javax.persistence.Id; -import javax.persistence.JoinColumn; -import javax.persistence.OneToOne; -import javax.persistence.SequenceGenerator; -import javax.persistence.Table; -import javax.persistence.Temporal; -import javax.persistence.TemporalType; +import jakarta.persistence.Column; +import jakarta.persistence.Entity; +import jakarta.persistence.FetchType; +import jakarta.persistence.GeneratedValue; +import jakarta.persistence.GenerationType; +import jakarta.persistence.Id; +import jakarta.persistence.JoinColumn; +import jakarta.persistence.OneToOne; +import jakarta.persistence.SequenceGenerator; +import jakarta.persistence.Table; +import jakarta.persistence.Temporal; +import jakarta.persistence.TemporalType; import org.dspace.content.Item; import org.dspace.core.Context; import org.dspace.core.ReloadableEntity; diff --git a/dspace-api/src/main/java/org/dspace/harvest/OAIHarvester.java b/dspace-api/src/main/java/org/dspace/harvest/OAIHarvester.java index bed8c044dd8a..e26255564bae 100644 --- a/dspace-api/src/main/java/org/dspace/harvest/OAIHarvester.java +++ b/dspace-api/src/main/java/org/dspace/harvest/OAIHarvester.java @@ -36,6 +36,7 @@ import java.time.Instant; import java.time.temporal.ChronoUnit; import java.util.ArrayList; +import java.util.Arrays; import java.util.Calendar; import java.util.Collections; import java.util.Date; @@ -868,12 +869,12 @@ private Optional getMetadataIdentifier(Element record) { * @param item a newly created, but not yet installed, DSpace Item * @return null or the handle to be used. */ - private String extractHandle(Item item) { - String[] acceptedHandleServers = configurationService.getArrayProperty("oai.harvester.acceptedHandleServer", - new String[] { "hdl.handle.net" }); + protected String extractHandle(Item item) { + String[] acceptedHandleServers = configurationService + .getArrayProperty("oai.harvester.acceptedHandleServer", new String[] {"hdl.handle.net"}); - String[] rejectedHandlePrefixes = configurationService.getArrayProperty("oai.harvester.rejectedHandlePrefix", - new String[] { "123456789" }); + String[] rejectedHandlePrefixes = configurationService + .getArrayProperty("oai.harvester.rejectedHandlePrefix", new String[] {"123456789"}); List values = itemService.getMetadata(item, "dc", "identifier", Item.ANY, Item.ANY); @@ -881,22 +882,21 @@ private String extractHandle(Item item) { return null; } - for (MetadataValue value : values) { - // 0 1 2 3 4 - // http://hdl.handle.net/1234/12 - String[] urlPieces = value.getValue().split("/"); - if (urlPieces.length != 5) { - continue; - } + if (!values.isEmpty() && acceptedHandleServers != null) { + for (MetadataValue value : values) { + // 0 1 2 3 4 + // https://hdl.handle.net/1234/12 + String[] urlPieces = value.getValue().split("/"); + if (urlPieces.length != 5) { + continue; + } - for (String server : acceptedHandleServers) { - if (urlPieces[2].equals(server)) { - for (String prefix : rejectedHandlePrefixes) { - if (!urlPieces[3].equals(prefix)) { + for (String server : acceptedHandleServers) { + if (urlPieces[2].equals(server)) { + if (Arrays.stream(rejectedHandlePrefixes).noneMatch(prefix -> prefix.equals(urlPieces[3]))) { return urlPieces[3] + "/" + urlPieces[4]; } } - } } } diff --git a/dspace-api/src/main/java/org/dspace/harvest/dao/impl/HarvestedCollectionDAOImpl.java b/dspace-api/src/main/java/org/dspace/harvest/dao/impl/HarvestedCollectionDAOImpl.java index 95a0bdf2163e..ab942a74ef07 100644 --- a/dspace-api/src/main/java/org/dspace/harvest/dao/impl/HarvestedCollectionDAOImpl.java +++ b/dspace-api/src/main/java/org/dspace/harvest/dao/impl/HarvestedCollectionDAOImpl.java @@ -11,11 +11,11 @@ import java.util.Date; import java.util.LinkedList; import java.util.List; -import javax.persistence.criteria.CriteriaBuilder; -import javax.persistence.criteria.CriteriaQuery; -import javax.persistence.criteria.Predicate; -import javax.persistence.criteria.Root; +import jakarta.persistence.criteria.CriteriaBuilder; +import jakarta.persistence.criteria.CriteriaQuery; +import jakarta.persistence.criteria.Predicate; +import jakarta.persistence.criteria.Root; import org.dspace.content.Collection; import org.dspace.core.AbstractHibernateDAO; import org.dspace.core.Context; @@ -46,7 +46,7 @@ public HarvestedCollection findByStatusAndMinimalTypeOrderByLastHarvestedDesc(Co Root harvestedCollectionRoot = criteriaQuery.from(HarvestedCollection.class); criteriaQuery.select(harvestedCollectionRoot); - List orderList = new LinkedList<>(); + List orderList = new LinkedList<>(); orderList.add(criteriaBuilder.desc(harvestedCollectionRoot.get(HarvestedCollection_.lastHarvested))); criteriaQuery.orderBy(orderList); @@ -61,7 +61,7 @@ public HarvestedCollection findByStatusAndMinimalTypeOrderByLastHarvestedAsc(Con Root harvestedCollectionRoot = criteriaQuery.from(HarvestedCollection.class); criteriaQuery.select(harvestedCollectionRoot); - List orderList = new LinkedList<>(); + List orderList = new LinkedList<>(); orderList.add(criteriaBuilder.asc(harvestedCollectionRoot.get(HarvestedCollection_.lastHarvested))); criteriaQuery.orderBy(orderList); @@ -138,7 +138,7 @@ public HarvestedCollection findByCollection(Context context, Collection collecti ) ); - List orderList = new LinkedList<>(); + List orderList = new LinkedList<>(); orderList.add(criteriaBuilder.asc(harvestedCollectionRoot.get(HarvestedCollection_.lastHarvested))); criteriaQuery.orderBy(orderList); @@ -150,11 +150,10 @@ public HarvestedCollection findByCollection(Context context, Collection collecti @Override public int count(Context context) throws SQLException { - CriteriaBuilder criteriaBuilder = getCriteriaBuilder(context); CriteriaQuery criteriaQuery = criteriaBuilder.createQuery(Long.class); - Root harvestedCollectionRoot = criteriaQuery.from(HarvestedCollection.class); + criteriaQuery.select(criteriaBuilder.count(harvestedCollectionRoot)); return count(context, criteriaQuery, criteriaBuilder, harvestedCollectionRoot); } diff --git a/dspace-api/src/main/java/org/dspace/harvest/dao/impl/HarvestedItemDAOImpl.java b/dspace-api/src/main/java/org/dspace/harvest/dao/impl/HarvestedItemDAOImpl.java index 9e9838be6c1c..bb7ff0ee7cc4 100644 --- a/dspace-api/src/main/java/org/dspace/harvest/dao/impl/HarvestedItemDAOImpl.java +++ b/dspace-api/src/main/java/org/dspace/harvest/dao/impl/HarvestedItemDAOImpl.java @@ -8,11 +8,11 @@ package org.dspace.harvest.dao.impl; import java.sql.SQLException; -import javax.persistence.criteria.CriteriaBuilder; -import javax.persistence.criteria.CriteriaQuery; -import javax.persistence.criteria.Join; -import javax.persistence.criteria.Root; +import jakarta.persistence.criteria.CriteriaBuilder; +import jakarta.persistence.criteria.CriteriaQuery; +import jakarta.persistence.criteria.Join; +import jakarta.persistence.criteria.Root; import org.dspace.content.Collection; import org.dspace.content.Item; import org.dspace.content.Item_; diff --git a/dspace-api/src/main/java/org/dspace/health/Report.java b/dspace-api/src/main/java/org/dspace/health/Report.java index ebb2ffd688c0..d083a45b13d1 100644 --- a/dspace-api/src/main/java/org/dspace/health/Report.java +++ b/dspace-api/src/main/java/org/dspace/health/Report.java @@ -15,8 +15,8 @@ import java.util.List; import java.util.Map.Entry; import java.util.StringTokenizer; -import javax.mail.MessagingException; +import jakarta.mail.MessagingException; import org.apache.commons.cli.CommandLine; import org.apache.commons.cli.DefaultParser; import org.apache.commons.cli.HelpFormatter; diff --git a/dspace-api/src/main/java/org/dspace/identifier/DOI.java b/dspace-api/src/main/java/org/dspace/identifier/DOI.java index e99472e45c78..2e699e990fc1 100644 --- a/dspace-api/src/main/java/org/dspace/identifier/DOI.java +++ b/dspace-api/src/main/java/org/dspace/identifier/DOI.java @@ -8,17 +8,16 @@ package org.dspace.identifier; -import javax.persistence.Column; -import javax.persistence.Entity; -import javax.persistence.FetchType; -import javax.persistence.GeneratedValue; -import javax.persistence.GenerationType; -import javax.persistence.Id; -import javax.persistence.JoinColumn; -import javax.persistence.OneToOne; -import javax.persistence.SequenceGenerator; -import javax.persistence.Table; - +import jakarta.persistence.Column; +import jakarta.persistence.Entity; +import jakarta.persistence.FetchType; +import jakarta.persistence.GeneratedValue; +import jakarta.persistence.GenerationType; +import jakarta.persistence.Id; +import jakarta.persistence.JoinColumn; +import jakarta.persistence.OneToOne; +import jakarta.persistence.SequenceGenerator; +import jakarta.persistence.Table; import org.dspace.content.DSpaceObject; import org.dspace.core.Context; import org.dspace.core.ReloadableEntity; diff --git a/dspace-api/src/main/java/org/dspace/identifier/DOIServiceImpl.java b/dspace-api/src/main/java/org/dspace/identifier/DOIServiceImpl.java index 2e726234a284..7f7c90ed5ff0 100644 --- a/dspace-api/src/main/java/org/dspace/identifier/DOIServiceImpl.java +++ b/dspace-api/src/main/java/org/dspace/identifier/DOIServiceImpl.java @@ -57,6 +57,16 @@ public DOI create(Context context) throws SQLException { return doiDAO.create(context, new DOI()); } + @Override + public void delete(Context context, DOI doi) throws SQLException { + doiDAO.delete(context, doi); + } + + @Override + public List findAll(Context context) throws SQLException { + return doiDAO.findAll(context, DOI.class); + } + @Override public DOI findByDoi(Context context, String doi) throws SQLException { return doiDAO.findByDoi(context, doi); diff --git a/dspace-api/src/main/java/org/dspace/identifier/HandleIdentifierProvider.java b/dspace-api/src/main/java/org/dspace/identifier/HandleIdentifierProvider.java index 0d764e9575a1..07a3480226b1 100644 --- a/dspace-api/src/main/java/org/dspace/identifier/HandleIdentifierProvider.java +++ b/dspace-api/src/main/java/org/dspace/identifier/HandleIdentifierProvider.java @@ -27,7 +27,6 @@ import org.dspace.services.ConfigurationService; import org.dspace.services.factory.DSpaceServicesFactory; import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.stereotype.Component; /** * The old DSpace handle identifier service, used to create handles or retrieve objects based on their handle @@ -36,7 +35,6 @@ * @author Mark Diggory (markd at atmire dot com) * @author Ben Bosman (ben at atmire dot com) */ -@Component public class HandleIdentifierProvider extends IdentifierProvider { /** * log4j category diff --git a/dspace-api/src/main/java/org/dspace/identifier/VersionedHandleIdentifierProvider.java b/dspace-api/src/main/java/org/dspace/identifier/VersionedHandleIdentifierProvider.java index 94f24baee941..eef0b0bd92ce 100644 --- a/dspace-api/src/main/java/org/dspace/identifier/VersionedHandleIdentifierProvider.java +++ b/dspace-api/src/main/java/org/dspace/identifier/VersionedHandleIdentifierProvider.java @@ -37,7 +37,6 @@ import org.dspace.versioning.service.VersioningService; import org.springframework.beans.factory.InitializingBean; import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.stereotype.Component; /** * @author Fabio Bolognesi (fabio at atmire dot com) @@ -45,7 +44,6 @@ * @author Ben Bosman (ben at atmire dot com) * @author Pascal-Nicolas Becker (dspace at pascal dash becker dot de) */ -@Component public class VersionedHandleIdentifierProvider extends IdentifierProvider implements InitializingBean { /** * log4j category diff --git a/dspace-api/src/main/java/org/dspace/identifier/VersionedHandleIdentifierProviderWithCanonicalHandles.java b/dspace-api/src/main/java/org/dspace/identifier/VersionedHandleIdentifierProviderWithCanonicalHandles.java index d73dfa448db9..4e74af774380 100644 --- a/dspace-api/src/main/java/org/dspace/identifier/VersionedHandleIdentifierProviderWithCanonicalHandles.java +++ b/dspace-api/src/main/java/org/dspace/identifier/VersionedHandleIdentifierProviderWithCanonicalHandles.java @@ -34,14 +34,12 @@ import org.dspace.versioning.service.VersioningService; import org.springframework.beans.factory.InitializingBean; import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.stereotype.Component; /** * @author Fabio Bolognesi (fabio at atmire dot com) * @author Mark Diggory (markd at atmire dot com) * @author Ben Bosman (ben at atmire dot com) */ -@Component public class VersionedHandleIdentifierProviderWithCanonicalHandles extends IdentifierProvider implements InitializingBean { /** diff --git a/dspace-api/src/main/java/org/dspace/identifier/dao/impl/DOIDAOImpl.java b/dspace-api/src/main/java/org/dspace/identifier/dao/impl/DOIDAOImpl.java index 0811a7adfb61..9f3f0033e09e 100644 --- a/dspace-api/src/main/java/org/dspace/identifier/dao/impl/DOIDAOImpl.java +++ b/dspace-api/src/main/java/org/dspace/identifier/dao/impl/DOIDAOImpl.java @@ -10,11 +10,11 @@ import java.sql.SQLException; import java.util.ArrayList; import java.util.List; -import javax.persistence.criteria.CriteriaBuilder; -import javax.persistence.criteria.CriteriaQuery; -import javax.persistence.criteria.Predicate; -import javax.persistence.criteria.Root; +import jakarta.persistence.criteria.CriteriaBuilder; +import jakarta.persistence.criteria.CriteriaQuery; +import jakarta.persistence.criteria.Predicate; +import jakarta.persistence.criteria.Root; import org.dspace.content.DSpaceObject; import org.dspace.core.AbstractHibernateDAO; import org.dspace.core.Context; diff --git a/dspace-api/src/main/java/org/dspace/identifier/doi/DOIOrganiser.java b/dspace-api/src/main/java/org/dspace/identifier/doi/DOIOrganiser.java index ba789b2a7b4b..7ad5a296782d 100644 --- a/dspace-api/src/main/java/org/dspace/identifier/doi/DOIOrganiser.java +++ b/dspace-api/src/main/java/org/dspace/identifier/doi/DOIOrganiser.java @@ -17,8 +17,8 @@ import java.util.List; import java.util.Locale; import java.util.UUID; -import javax.mail.MessagingException; +import jakarta.mail.MessagingException; import org.apache.commons.cli.CommandLine; import org.apache.commons.cli.CommandLineParser; import org.apache.commons.cli.DefaultParser; diff --git a/dspace-api/src/main/java/org/dspace/identifier/service/DOIService.java b/dspace-api/src/main/java/org/dspace/identifier/service/DOIService.java index e8236a013f7e..732aef32e7ed 100644 --- a/dspace-api/src/main/java/org/dspace/identifier/service/DOIService.java +++ b/dspace-api/src/main/java/org/dspace/identifier/service/DOIService.java @@ -43,6 +43,23 @@ public interface DOIService { */ public DOI create(Context context) throws SQLException; + /** + * Deletes the given {@link DOI}. + * + * @param context current DSpace session. + * @throws SQLException passed through. + */ + void delete(Context context, DOI doi) throws SQLException; + + /** + * Retrieves the full list of {@link DOI}s currently in storage. + * + * @param context current DSpace session. + * @return The list of all DOIs currently in storage. + * @throws SQLException passed through. + */ + List findAll(Context context) throws SQLException; + /** * Find a specific DOI in storage. * diff --git a/dspace-api/src/main/java/org/dspace/importer/external/MultipleParallelImportMetadataSourceServiceImpl.java b/dspace-api/src/main/java/org/dspace/importer/external/MultipleParallelImportMetadataSourceServiceImpl.java index 4c253b0502f7..1bb7e9269596 100644 --- a/dspace-api/src/main/java/org/dspace/importer/external/MultipleParallelImportMetadataSourceServiceImpl.java +++ b/dspace-api/src/main/java/org/dspace/importer/external/MultipleParallelImportMetadataSourceServiceImpl.java @@ -16,8 +16,8 @@ import java.util.concurrent.ExecutorService; import java.util.concurrent.Executors; import java.util.concurrent.Future; -import javax.el.MethodNotFoundException; +import jakarta.el.MethodNotFoundException; import org.dspace.content.Item; import org.dspace.importer.external.datamodel.ImportRecord; import org.dspace.importer.external.datamodel.Query; diff --git a/dspace-api/src/main/java/org/dspace/importer/external/ads/ADSFieldMapping.java b/dspace-api/src/main/java/org/dspace/importer/external/ads/ADSFieldMapping.java index e8e318ca5ab1..c7a72e5ad896 100644 --- a/dspace-api/src/main/java/org/dspace/importer/external/ads/ADSFieldMapping.java +++ b/dspace-api/src/main/java/org/dspace/importer/external/ads/ADSFieldMapping.java @@ -8,8 +8,8 @@ package org.dspace.importer.external.ads; import java.util.Map; -import javax.annotation.Resource; +import jakarta.annotation.Resource; import org.dspace.importer.external.metadatamapping.AbstractMetadataFieldMapping; /** diff --git a/dspace-api/src/main/java/org/dspace/importer/external/ads/ADSImportMetadataSourceServiceImpl.java b/dspace-api/src/main/java/org/dspace/importer/external/ads/ADSImportMetadataSourceServiceImpl.java index da59472c45a6..ba53caee65f2 100644 --- a/dspace-api/src/main/java/org/dspace/importer/external/ads/ADSImportMetadataSourceServiceImpl.java +++ b/dspace-api/src/main/java/org/dspace/importer/external/ads/ADSImportMetadataSourceServiceImpl.java @@ -17,11 +17,11 @@ import java.util.List; import java.util.Map; import java.util.concurrent.Callable; -import javax.el.MethodNotFoundException; import com.fasterxml.jackson.core.JsonProcessingException; import com.fasterxml.jackson.databind.JsonNode; import com.fasterxml.jackson.databind.ObjectMapper; +import jakarta.el.MethodNotFoundException; import org.apache.commons.collections.CollectionUtils; import org.apache.commons.lang3.StringUtils; import org.apache.http.client.utils.URIBuilder; diff --git a/dspace-api/src/main/java/org/dspace/importer/external/arxiv/metadatamapping/ArXivFieldMapping.java b/dspace-api/src/main/java/org/dspace/importer/external/arxiv/metadatamapping/ArXivFieldMapping.java index 272b14901514..48e7df89b387 100644 --- a/dspace-api/src/main/java/org/dspace/importer/external/arxiv/metadatamapping/ArXivFieldMapping.java +++ b/dspace-api/src/main/java/org/dspace/importer/external/arxiv/metadatamapping/ArXivFieldMapping.java @@ -8,8 +8,8 @@ package org.dspace.importer.external.arxiv.metadatamapping; import java.util.Map; -import javax.annotation.Resource; +import jakarta.annotation.Resource; import org.dspace.importer.external.metadatamapping.AbstractMetadataFieldMapping; /** diff --git a/dspace-api/src/main/java/org/dspace/importer/external/arxiv/service/ArXivImportMetadataSourceServiceImpl.java b/dspace-api/src/main/java/org/dspace/importer/external/arxiv/service/ArXivImportMetadataSourceServiceImpl.java index 96689e62ba75..a1df4a7f40c1 100644 --- a/dspace-api/src/main/java/org/dspace/importer/external/arxiv/service/ArXivImportMetadataSourceServiceImpl.java +++ b/dspace-api/src/main/java/org/dspace/importer/external/arxiv/service/ArXivImportMetadataSourceServiceImpl.java @@ -14,14 +14,14 @@ import java.util.Collection; import java.util.List; import java.util.concurrent.Callable; -import javax.el.MethodNotFoundException; -import javax.ws.rs.client.Client; -import javax.ws.rs.client.ClientBuilder; -import javax.ws.rs.client.Invocation; -import javax.ws.rs.client.WebTarget; -import javax.ws.rs.core.MediaType; -import javax.ws.rs.core.Response; +import jakarta.el.MethodNotFoundException; +import jakarta.ws.rs.client.Client; +import jakarta.ws.rs.client.ClientBuilder; +import jakarta.ws.rs.client.Invocation; +import jakarta.ws.rs.client.WebTarget; +import jakarta.ws.rs.core.MediaType; +import jakarta.ws.rs.core.Response; import org.apache.commons.lang3.StringUtils; import org.dspace.content.Item; import org.dspace.importer.external.datamodel.ImportRecord; diff --git a/dspace-api/src/main/java/org/dspace/importer/external/bibtex/service/BibtexImportMetadataSourceServiceImpl.java b/dspace-api/src/main/java/org/dspace/importer/external/bibtex/service/BibtexImportMetadataSourceServiceImpl.java index 4b6a5aa92e72..88998b86e364 100644 --- a/dspace-api/src/main/java/org/dspace/importer/external/bibtex/service/BibtexImportMetadataSourceServiceImpl.java +++ b/dspace-api/src/main/java/org/dspace/importer/external/bibtex/service/BibtexImportMetadataSourceServiceImpl.java @@ -16,8 +16,8 @@ import java.util.List; import java.util.Map; import java.util.Map.Entry; -import javax.annotation.Resource; +import jakarta.annotation.Resource; import org.dspace.importer.external.exception.FileSourceException; import org.dspace.importer.external.service.components.AbstractPlainMetadataSource; import org.dspace.importer.external.service.components.dto.PlainMetadataKeyValueItem; diff --git a/dspace-api/src/main/java/org/dspace/importer/external/cinii/CiniiFieldMapping.java b/dspace-api/src/main/java/org/dspace/importer/external/cinii/CiniiFieldMapping.java index f266ff3d8512..aad756fbb06e 100644 --- a/dspace-api/src/main/java/org/dspace/importer/external/cinii/CiniiFieldMapping.java +++ b/dspace-api/src/main/java/org/dspace/importer/external/cinii/CiniiFieldMapping.java @@ -8,8 +8,8 @@ package org.dspace.importer.external.cinii; import java.util.Map; -import javax.annotation.Resource; +import jakarta.annotation.Resource; import org.dspace.importer.external.metadatamapping.AbstractMetadataFieldMapping; /** diff --git a/dspace-api/src/main/java/org/dspace/importer/external/cinii/CiniiImportMetadataSourceServiceImpl.java b/dspace-api/src/main/java/org/dspace/importer/external/cinii/CiniiImportMetadataSourceServiceImpl.java index 4c5d8ab8255b..e1c740681b54 100644 --- a/dspace-api/src/main/java/org/dspace/importer/external/cinii/CiniiImportMetadataSourceServiceImpl.java +++ b/dspace-api/src/main/java/org/dspace/importer/external/cinii/CiniiImportMetadataSourceServiceImpl.java @@ -19,8 +19,8 @@ import java.util.Map; import java.util.Objects; import java.util.concurrent.Callable; -import javax.el.MethodNotFoundException; +import jakarta.el.MethodNotFoundException; import org.apache.commons.collections.CollectionUtils; import org.apache.commons.lang.StringUtils; import org.apache.http.HttpException; diff --git a/dspace-api/src/main/java/org/dspace/importer/external/crossref/CrossRefAbstractProcessor.java b/dspace-api/src/main/java/org/dspace/importer/external/crossref/CrossRefAbstractProcessor.java new file mode 100644 index 000000000000..1b6da9d37b16 --- /dev/null +++ b/dspace-api/src/main/java/org/dspace/importer/external/crossref/CrossRefAbstractProcessor.java @@ -0,0 +1,123 @@ +/** + * The contents of this file are subject to the license and copyright + * detailed in the LICENSE and NOTICE files at the root of the source + * tree and available online at + * + * http://www.dspace.org/license/ + */ +package org.dspace.importer.external.crossref; + +import java.io.IOException; +import java.io.StringReader; +import java.util.ArrayList; +import java.util.Collection; +import javax.xml.parsers.DocumentBuilder; +import javax.xml.parsers.DocumentBuilderFactory; +import javax.xml.parsers.ParserConfigurationException; + +import com.fasterxml.jackson.core.JsonProcessingException; +import com.fasterxml.jackson.databind.JsonNode; +import com.fasterxml.jackson.databind.ObjectMapper; +import org.apache.commons.lang3.StringUtils; +import org.apache.logging.log4j.LogManager; +import org.apache.logging.log4j.Logger; +import org.dspace.importer.external.metadatamapping.contributor.JsonPathMetadataProcessor; +import org.w3c.dom.Document; +import org.w3c.dom.Node; +import org.w3c.dom.NodeList; +import org.xml.sax.InputSource; +import org.xml.sax.SAXException; + +public class CrossRefAbstractProcessor implements JsonPathMetadataProcessor { + + private final static Logger log = LogManager.getLogger(); + + private String path; + + @Override + public Collection processMetadata(String json) { + JsonNode rootNode = convertStringJsonToJsonNode(json); + JsonNode abstractNode = rootNode.at(path); + Collection values = new ArrayList<>(); + if (!abstractNode.isMissingNode()) { + String abstractValue = abstractNode.textValue(); + if (StringUtils.isNotEmpty(abstractValue)) { + abstractValue = prettifyAbstract(abstractValue); + if (abstractValue != null) { + values.add(abstractValue); + } + } + } + return values; + } + + /** + * remove JATS markup from abstract + * + * @param abstractValue abstract with JATS markup + * @return abstract without JATS markup + */ + private String prettifyAbstract(String abstractValue) { + if (!abstractValue.contains(""; + DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance(); + Document xmlDoc; + try { + DocumentBuilder builder = factory.newDocumentBuilder(); + InputSource is = new InputSource(new StringReader(xmlString)); + xmlDoc = builder.parse(is); + } catch (SAXException | IOException | ParserConfigurationException e) { + log.warn("unable to parse XML markup in CrossRef abstract field: " + e.getMessage()); + return null; + } + + StringBuilder sb = new StringBuilder(); + + NodeList rootElements = xmlDoc.getElementsByTagName("root"); + Node rootElement = rootElements.item(0); + NodeList childElements = rootElement.getChildNodes(); + for (int i = 0; i < childElements.getLength(); i++) { + Node childElement = childElements.item(i); + String nodeName = childElement.getNodeName(); + if (StringUtils.equals(nodeName, "jats:title")) { + if (! StringUtils.equals(childElement.getTextContent(), "Abstract")) { + sb.append(childElement.getTextContent()); + sb.append("\n"); + } + } else if (StringUtils.equals(nodeName, "jats:sec")) { + NodeList secElements = childElement.getChildNodes(); + for (int j = 0; j < secElements.getLength(); j++) { + Node secChildElement = secElements.item(j); + sb.append(secChildElement.getTextContent()); + sb.append("\n"); + } + sb.append("\n"); + } + } + + return sb.toString().trim(); + } + + private JsonNode convertStringJsonToJsonNode(String json) { + ObjectMapper mapper = new ObjectMapper(); + JsonNode body = null; + try { + body = mapper.readTree(json); + } catch (JsonProcessingException e) { + log.error("Unable to process json response.", e); + } + return body; + } + + public String getPath() { + return path; + } + + public void setPath(String path) { + this.path = path; + } +} diff --git a/dspace-api/src/main/java/org/dspace/importer/external/crossref/CrossRefFieldMapping.java b/dspace-api/src/main/java/org/dspace/importer/external/crossref/CrossRefFieldMapping.java index 5e879b4d266e..81571ed7bb5e 100644 --- a/dspace-api/src/main/java/org/dspace/importer/external/crossref/CrossRefFieldMapping.java +++ b/dspace-api/src/main/java/org/dspace/importer/external/crossref/CrossRefFieldMapping.java @@ -8,8 +8,8 @@ package org.dspace.importer.external.crossref; import java.util.Map; -import javax.annotation.Resource; +import jakarta.annotation.Resource; import org.dspace.importer.external.metadatamapping.AbstractMetadataFieldMapping; /** diff --git a/dspace-api/src/main/java/org/dspace/importer/external/crossref/CrossRefImportMetadataSourceServiceImpl.java b/dspace-api/src/main/java/org/dspace/importer/external/crossref/CrossRefImportMetadataSourceServiceImpl.java index 04f8d9d271cc..6b1e6f922181 100644 --- a/dspace-api/src/main/java/org/dspace/importer/external/crossref/CrossRefImportMetadataSourceServiceImpl.java +++ b/dspace-api/src/main/java/org/dspace/importer/external/crossref/CrossRefImportMetadataSourceServiceImpl.java @@ -16,11 +16,11 @@ import java.util.Map; import java.util.Objects; import java.util.concurrent.Callable; -import javax.el.MethodNotFoundException; import com.fasterxml.jackson.core.JsonProcessingException; import com.fasterxml.jackson.databind.JsonNode; import com.fasterxml.jackson.databind.ObjectMapper; +import jakarta.el.MethodNotFoundException; import org.apache.commons.collections4.CollectionUtils; import org.apache.commons.lang3.StringUtils; import org.apache.http.client.utils.URIBuilder; @@ -133,7 +133,7 @@ private class SearchByQueryCallable implements Callable> { private SearchByQueryCallable(String queryString, Integer maxResult, Integer start) { query = new Query(); - query.addParameter("query", queryString); + query.addParameter("query", StringUtils.trim(queryString)); query.addParameter("count", maxResult); query.addParameter("start", start); } @@ -189,14 +189,15 @@ private SearchByIdCallable(Query query) { private SearchByIdCallable(String id) { this.query = new Query(); - query.addParameter("id", id); + query.addParameter("id", StringUtils.trim(id)); } @Override public List call() throws Exception { List results = new ArrayList<>(); + URIBuilder uriBuilder = new URIBuilder(url); String ID = URLDecoder.decode(query.getParameterAsClass("id", String.class), "UTF-8"); - URIBuilder uriBuilder = new URIBuilder(url + "/" + ID); + uriBuilder.setPath(uriBuilder.getPath() + "/" + ID); Map> params = new HashMap>(); String responseString = liveImportClient.executeHttpGetRequest(1000, uriBuilder.toString(), params); if (StringUtils.isEmpty(responseString)) { @@ -286,7 +287,7 @@ private class CountByQueryCallable implements Callable { private CountByQueryCallable(String queryString) { query = new Query(); - query.addParameter("query", queryString); + query.addParameter("query", StringUtils.trim(queryString)); } private CountByQueryCallable(Query query) { @@ -320,7 +321,7 @@ private class DoiCheckCallable implements Callable { private DoiCheckCallable(final String id) { final Query query = new Query(); - query.addParameter("id", id); + query.addParameter("id", StringUtils.trim(id)); this.query = query; } @@ -331,7 +332,8 @@ private DoiCheckCallable(final Query query) { @Override public Integer call() throws Exception { Map> params = new HashMap>(); - URIBuilder uriBuilder = new URIBuilder(url + "/" + query.getParameterAsClass("id", String.class)); + URIBuilder uriBuilder = new URIBuilder(url); + uriBuilder.setPath(uriBuilder.getPath() + "/" + query.getParameterAsClass("id", String.class)); String responseString = liveImportClient.executeHttpGetRequest(1000, uriBuilder.toString(), params); JsonNode jsonNode = convertStringJsonToJsonNode(responseString); return StringUtils.equals(jsonNode.at("/status").toString(), "ok") ? 1 : 0; diff --git a/dspace-api/src/main/java/org/dspace/importer/external/datacite/DataCiteFieldMapping.java b/dspace-api/src/main/java/org/dspace/importer/external/datacite/DataCiteFieldMapping.java index f8540307b916..a67b73480dfa 100644 --- a/dspace-api/src/main/java/org/dspace/importer/external/datacite/DataCiteFieldMapping.java +++ b/dspace-api/src/main/java/org/dspace/importer/external/datacite/DataCiteFieldMapping.java @@ -8,8 +8,8 @@ package org.dspace.importer.external.datacite; import java.util.Map; -import javax.annotation.Resource; +import jakarta.annotation.Resource; import org.dspace.importer.external.metadatamapping.AbstractMetadataFieldMapping; /** diff --git a/dspace-api/src/main/java/org/dspace/importer/external/datacite/DataCiteImportMetadataSourceServiceImpl.java b/dspace-api/src/main/java/org/dspace/importer/external/datacite/DataCiteImportMetadataSourceServiceImpl.java index a11f2bc2471d..ad6e260bd0d5 100644 --- a/dspace-api/src/main/java/org/dspace/importer/external/datacite/DataCiteImportMetadataSourceServiceImpl.java +++ b/dspace-api/src/main/java/org/dspace/importer/external/datacite/DataCiteImportMetadataSourceServiceImpl.java @@ -13,11 +13,11 @@ import java.util.Iterator; import java.util.List; import java.util.Map; -import javax.el.MethodNotFoundException; import com.fasterxml.jackson.core.JsonProcessingException; import com.fasterxml.jackson.databind.JsonNode; import com.fasterxml.jackson.databind.ObjectMapper; +import jakarta.el.MethodNotFoundException; import org.apache.commons.lang3.StringUtils; import org.apache.logging.log4j.LogManager; import org.apache.logging.log4j.Logger; @@ -73,8 +73,32 @@ public ImportRecord getRecord(String recordId) throws MetadataSourceException { @Override public int getRecordsCount(String query) throws MetadataSourceException { - Collection records = getRecords(query, 0, -1); - return records == null ? 0 : records.size(); + String id = getID(query); + Map> params = new HashMap<>(); + Map uriParameters = new HashMap<>(); + params.put("uriParameters", uriParameters); + if (StringUtils.isBlank(id)) { + id = query; + } + uriParameters.put("query", id); + uriParameters.put("page[size]", "1"); + int timeoutMs = configurationService.getIntProperty("datacite.timeout", 180000); + String url = configurationService.getProperty("datacite.url", "https://api.datacite.org/dois/"); + String responseString = liveImportClient.executeHttpGetRequest(timeoutMs, url, params); + JsonNode jsonNode = convertStringJsonToJsonNode(responseString); + if (jsonNode == null) { + log.warn("DataCite returned invalid JSON"); + throw new MetadataSourceException("Could not read datacite source"); + } + JsonNode dataNode = jsonNode.at("/meta/total"); + if (dataNode != null) { + try { + return Integer.valueOf(dataNode.toString()); + } catch (Exception e) { + log.debug("Could not read integer value" + dataNode.toString()); + } + } + return 0; } @Override @@ -95,6 +119,17 @@ public Collection getRecords(String query, int start, int count) t id = query; } uriParameters.put("query", id); + // start = current dspace page / datacite page number starting with 1 + // dspace rounds up/down to the next configured pagination settings. + if (start > 0 && count > 0) { + uriParameters.put("page[number]", Integer.toString((start / count) + 1)); + } + + // count = dspace page size / default datacite page size is currently 25 https://support.datacite.org/docs/pagination + if (count > 0) { + uriParameters.put("page[size]", Integer.toString(count)); + } + int timeoutMs = configurationService.getIntProperty("datacite.timeout", 180000); String url = configurationService.getProperty("datacite.url", "https://api.datacite.org/dois/"); String responseString = liveImportClient.executeHttpGetRequest(timeoutMs, url, params); @@ -108,12 +143,16 @@ public Collection getRecords(String query, int start, int count) t Iterator iterator = dataNode.iterator(); while (iterator.hasNext()) { JsonNode singleDoiNode = iterator.next(); - String json = singleDoiNode.at("/attributes").toString(); - records.add(transformSourceRecords(json)); + JsonNode singleDoiNodeAttribute = singleDoiNode.at("/attributes"); + if (!singleDoiNodeAttribute.isMissingNode()) { + records.add(transformSourceRecords(singleDoiNodeAttribute.toString())); + } } } else { - String json = dataNode.at("/attributes").toString(); - records.add(transformSourceRecords(json)); + JsonNode singleDoiNodeAttribute = dataNode.at("/attributes"); + if (!singleDoiNodeAttribute.isMissingNode()) { + records.add(transformSourceRecords(singleDoiNodeAttribute.toString())); + } } return records; diff --git a/dspace-api/src/main/java/org/dspace/importer/external/epo/service/EpoFieldMapping.java b/dspace-api/src/main/java/org/dspace/importer/external/epo/service/EpoFieldMapping.java index 64ec53ffb92b..955550ce0fe5 100644 --- a/dspace-api/src/main/java/org/dspace/importer/external/epo/service/EpoFieldMapping.java +++ b/dspace-api/src/main/java/org/dspace/importer/external/epo/service/EpoFieldMapping.java @@ -8,8 +8,8 @@ package org.dspace.importer.external.epo.service; import java.util.Map; -import javax.annotation.Resource; +import jakarta.annotation.Resource; import org.dspace.importer.external.metadatamapping.AbstractMetadataFieldMapping; diff --git a/dspace-api/src/main/java/org/dspace/importer/external/metadatamapping/contributor/AuthorMetadataContributor.java b/dspace-api/src/main/java/org/dspace/importer/external/metadatamapping/contributor/AuthorMetadataContributor.java index b2d2ea22b0c6..6a991acde50d 100644 --- a/dspace-api/src/main/java/org/dspace/importer/external/metadatamapping/contributor/AuthorMetadataContributor.java +++ b/dspace-api/src/main/java/org/dspace/importer/external/metadatamapping/contributor/AuthorMetadataContributor.java @@ -93,7 +93,7 @@ public void setMetadataFieldMapping( } /** - * Retrieve the the ScopusID, orcid, author name and affiliationID + * Retrieve the ScopusID, orcid, author name and affiliationID * metadata associated with the given element object. * If the value retrieved from the element is empty * it is set PLACEHOLDER_PARENT_METADATA_VALUE @@ -103,6 +103,7 @@ public void setMetadataFieldMapping( */ private List getMetadataOfAuthors(Element element) throws JaxenException { List metadatums = new ArrayList(); + Element authname = element.getChild("authname", NAMESPACE); Element surname = element.getChild("surname", NAMESPACE); Element givenName = element.getChild("given-name", NAMESPACE); Element scopusId = element.getChild("authid", NAMESPACE); @@ -208,4 +209,4 @@ public void setCreatorMetadataContributor( SimpleXpathMetadatumContributor creatorMetadataContributor) { this.creatorMetadataContributor = creatorMetadataContributor; } -} \ No newline at end of file +} diff --git a/dspace-api/src/main/java/org/dspace/importer/external/metadatamapping/contributor/EpoIdMetadataContributor.java b/dspace-api/src/main/java/org/dspace/importer/external/metadatamapping/contributor/EpoIdMetadataContributor.java index de30799f728e..465f141a66fd 100644 --- a/dspace-api/src/main/java/org/dspace/importer/external/metadatamapping/contributor/EpoIdMetadataContributor.java +++ b/dspace-api/src/main/java/org/dspace/importer/external/metadatamapping/contributor/EpoIdMetadataContributor.java @@ -13,8 +13,8 @@ import java.util.List; import java.util.Map; import java.util.Objects; -import javax.annotation.Resource; +import jakarta.annotation.Resource; import org.apache.commons.collections4.CollectionUtils; import org.apache.commons.lang3.StringUtils; import org.dspace.importer.external.metadatamapping.MetadataFieldConfig; @@ -28,7 +28,7 @@ import org.jdom2.filter.Filters; import org.jdom2.xpath.XPathExpression; import org.jdom2.xpath.XPathFactory; -import org.springframework.beans.factory.annotation.Required; +import org.springframework.beans.factory.annotation.Autowired; /** * Custom MetadataContributor to manage Epo ID. @@ -77,6 +77,7 @@ public MetadataFieldMapping> getMetadataFi * * @param metadataFieldMapping the new mapping. */ + @Override public void setMetadataFieldMapping( MetadataFieldMapping> metadataFieldMapping) { this.metadataFieldMapping = metadataFieldMapping; @@ -95,7 +96,8 @@ public void setPrefixToNamespaceMapping(Map prefixToNamespaceMap protected Map prefixToNamespaceMapping; /** - * Initialize EpoIdMetadataContributor with a query, prefixToNamespaceMapping and MetadataFieldConfig + * Initialize EpoIdMetadataContributor with all required fields: a query, prefixToNamespaceMapping + * and MetadataFieldConfig * * @param query query string * @param prefixToNamespaceMapping metadata prefix to namespace mapping @@ -113,7 +115,6 @@ public EpoIdMetadataContributor(String query, Map prefixToNamesp * Empty constructor for EpoIdMetadataContributor */ public EpoIdMetadataContributor() { - } protected String query; @@ -132,7 +133,7 @@ public MetadataFieldConfig getField() { * * @param field MetadataFieldConfig used while retrieving MetadatumDTO */ - @Required + @Autowired(required = true) public void setField(MetadataFieldConfig field) { this.field = field; } @@ -146,7 +147,11 @@ public String getQuery() { return query; } - @Required + /** + * Setting the query + * @param query query used + */ + @Autowired(required = true) public void setQuery(String query) { this.query = query; } diff --git a/dspace-api/src/main/java/org/dspace/importer/external/metadatamapping/contributor/SimpleXpathMetadatumContributor.java b/dspace-api/src/main/java/org/dspace/importer/external/metadatamapping/contributor/SimpleXpathMetadatumContributor.java index 598b827011b8..466b763fdc1b 100644 --- a/dspace-api/src/main/java/org/dspace/importer/external/metadatamapping/contributor/SimpleXpathMetadatumContributor.java +++ b/dspace-api/src/main/java/org/dspace/importer/external/metadatamapping/contributor/SimpleXpathMetadatumContributor.java @@ -12,9 +12,9 @@ import java.util.LinkedList; import java.util.List; import java.util.Map; -import javax.annotation.Resource; import org.apache.commons.lang.StringUtils; +import jakarta.annotation.Resource; import org.apache.logging.log4j.Logger; import org.dspace.importer.external.metadatamapping.MetadataFieldConfig; import org.dspace.importer.external.metadatamapping.MetadataFieldMapping; diff --git a/dspace-api/src/main/java/org/dspace/importer/external/metadatamapping/contributor/WosAttribute2ValueContributor.java b/dspace-api/src/main/java/org/dspace/importer/external/metadatamapping/contributor/WosAttribute2ValueContributor.java index 66e16f7ae866..9c10218a99bd 100644 --- a/dspace-api/src/main/java/org/dspace/importer/external/metadatamapping/contributor/WosAttribute2ValueContributor.java +++ b/dspace-api/src/main/java/org/dspace/importer/external/metadatamapping/contributor/WosAttribute2ValueContributor.java @@ -12,8 +12,8 @@ import java.util.LinkedList; import java.util.List; import java.util.Map; -import javax.annotation.Resource; +import jakarta.annotation.Resource; import org.apache.commons.lang3.StringUtils; import org.apache.logging.log4j.LogManager; import org.apache.logging.log4j.Logger; diff --git a/dspace-api/src/main/java/org/dspace/importer/external/openaire/metadatamapping/OpenAIREPublicationFieldMapping.java b/dspace-api/src/main/java/org/dspace/importer/external/openaire/metadatamapping/OpenAIREPublicationFieldMapping.java index d58ffc8ca9d5..cf326fb63d71 100644 --- a/dspace-api/src/main/java/org/dspace/importer/external/openaire/metadatamapping/OpenAIREPublicationFieldMapping.java +++ b/dspace-api/src/main/java/org/dspace/importer/external/openaire/metadatamapping/OpenAIREPublicationFieldMapping.java @@ -8,8 +8,8 @@ package org.dspace.importer.external.openaire.metadatamapping; import java.util.Map; -import javax.annotation.Resource; +import jakarta.annotation.Resource; import org.dspace.importer.external.metadatamapping.AbstractMetadataFieldMapping; /** diff --git a/dspace-api/src/main/java/org/dspace/importer/external/openaire/service/OpenAireImportMetadataSourceServiceImpl.java b/dspace-api/src/main/java/org/dspace/importer/external/openaire/service/OpenAireImportMetadataSourceServiceImpl.java index a286adcfd4ee..dab95ce620c7 100644 --- a/dspace-api/src/main/java/org/dspace/importer/external/openaire/service/OpenAireImportMetadataSourceServiceImpl.java +++ b/dspace-api/src/main/java/org/dspace/importer/external/openaire/service/OpenAireImportMetadataSourceServiceImpl.java @@ -15,15 +15,15 @@ import java.util.LinkedList; import java.util.List; import java.util.concurrent.Callable; -import javax.el.MethodNotFoundException; -import javax.ws.rs.client.Client; -import javax.ws.rs.client.ClientBuilder; -import javax.ws.rs.client.Invocation; -import javax.ws.rs.client.WebTarget; -import javax.ws.rs.core.Response; import org.apache.logging.log4j.LogManager; import org.apache.logging.log4j.Logger; +import jakarta.el.MethodNotFoundException; +import jakarta.ws.rs.client.Client; +import jakarta.ws.rs.client.ClientBuilder; +import jakarta.ws.rs.client.Invocation; +import jakarta.ws.rs.client.WebTarget; +import jakarta.ws.rs.core.Response; import org.dspace.content.Item; import org.dspace.importer.external.datamodel.ImportRecord; import org.dspace.importer.external.datamodel.Query; @@ -192,7 +192,8 @@ public String getQueryParam() { public void init() throws Exception { Client client = ClientBuilder.newClient(); if (baseAddress == null) { - baseAddress = configurationService.getProperty("openaire.base.url"); + baseAddress = configurationService.getProperty("openaire.search.url", + "https://api.openaire.eu/search/publications"); } if (queryParam == null) { queryParam = "title"; @@ -258,8 +259,9 @@ public Integer call() throws Exception { XPathExpression xpath = XPathFactory.instance().compile("/response/header/total", Filters.element(), null); - List recordsList = xpath.evaluate(root); - return recordsList.size(); + Element totalItem = xpath.evaluateFirst(root); + return totalItem != null ? Integer.parseInt(totalItem.getText()) : null; + } else { return 0; } diff --git a/dspace-api/src/main/java/org/dspace/importer/external/pubmed/metadatamapping/PubmedFieldMapping.java b/dspace-api/src/main/java/org/dspace/importer/external/pubmed/metadatamapping/PubmedFieldMapping.java index 2d315377669a..0d4dcf0c1e72 100644 --- a/dspace-api/src/main/java/org/dspace/importer/external/pubmed/metadatamapping/PubmedFieldMapping.java +++ b/dspace-api/src/main/java/org/dspace/importer/external/pubmed/metadatamapping/PubmedFieldMapping.java @@ -9,8 +9,8 @@ package org.dspace.importer.external.pubmed.metadatamapping; import java.util.Map; -import javax.annotation.Resource; +import jakarta.annotation.Resource; import org.dspace.importer.external.metadatamapping.AbstractMetadataFieldMapping; /** diff --git a/dspace-api/src/main/java/org/dspace/importer/external/pubmedeurope/PubmedEuropeFieldMapping.java b/dspace-api/src/main/java/org/dspace/importer/external/pubmedeurope/PubmedEuropeFieldMapping.java index 8c8e23fe989a..35d10af58443 100644 --- a/dspace-api/src/main/java/org/dspace/importer/external/pubmedeurope/PubmedEuropeFieldMapping.java +++ b/dspace-api/src/main/java/org/dspace/importer/external/pubmedeurope/PubmedEuropeFieldMapping.java @@ -8,8 +8,8 @@ package org.dspace.importer.external.pubmedeurope; import java.util.Map; -import javax.annotation.Resource; +import jakarta.annotation.Resource; import org.dspace.importer.external.metadatamapping.AbstractMetadataFieldMapping; /** diff --git a/dspace-api/src/main/java/org/dspace/importer/external/pubmedeurope/PubmedEuropeMetadataSourceServiceImpl.java b/dspace-api/src/main/java/org/dspace/importer/external/pubmedeurope/PubmedEuropeMetadataSourceServiceImpl.java index 217fe18f1cc5..79b22f0c7e68 100644 --- a/dspace-api/src/main/java/org/dspace/importer/external/pubmedeurope/PubmedEuropeMetadataSourceServiceImpl.java +++ b/dspace-api/src/main/java/org/dspace/importer/external/pubmedeurope/PubmedEuropeMetadataSourceServiceImpl.java @@ -17,8 +17,8 @@ import java.util.Map; import java.util.Objects; import java.util.concurrent.Callable; -import javax.el.MethodNotFoundException; +import jakarta.el.MethodNotFoundException; import org.apache.commons.lang3.StringUtils; import org.apache.http.HttpException; import org.apache.http.client.ClientProtocolException; diff --git a/dspace-api/src/main/java/org/dspace/importer/external/ris/service/RisImportMetadataSourceServiceImpl.java b/dspace-api/src/main/java/org/dspace/importer/external/ris/service/RisImportMetadataSourceServiceImpl.java index 1f460c19e697..e4e027016e13 100644 --- a/dspace-api/src/main/java/org/dspace/importer/external/ris/service/RisImportMetadataSourceServiceImpl.java +++ b/dspace-api/src/main/java/org/dspace/importer/external/ris/service/RisImportMetadataSourceServiceImpl.java @@ -17,8 +17,8 @@ import java.util.Map; import java.util.regex.Matcher; import java.util.regex.Pattern; -import javax.annotation.Resource; +import jakarta.annotation.Resource; import org.dspace.importer.external.exception.FileSourceException; import org.dspace.importer.external.service.components.AbstractPlainMetadataSource; import org.dspace.importer.external.service.components.dto.PlainMetadataKeyValueItem; diff --git a/dspace-api/src/main/java/org/dspace/importer/external/ror/service/RorFieldMapping.java b/dspace-api/src/main/java/org/dspace/importer/external/ror/service/RorFieldMapping.java index d7caeffdbaf2..3096a92f95dd 100644 --- a/dspace-api/src/main/java/org/dspace/importer/external/ror/service/RorFieldMapping.java +++ b/dspace-api/src/main/java/org/dspace/importer/external/ror/service/RorFieldMapping.java @@ -8,8 +8,8 @@ package org.dspace.importer.external.ror.service; import java.util.Map; -import javax.annotation.Resource; +import jakarta.annotation.Resource; import org.dspace.importer.external.metadatamapping.AbstractMetadataFieldMapping; diff --git a/dspace-api/src/main/java/org/dspace/importer/external/ror/service/RorImportMetadataSourceServiceImpl.java b/dspace-api/src/main/java/org/dspace/importer/external/ror/service/RorImportMetadataSourceServiceImpl.java index 0b0cc71f2499..735281f57bc7 100644 --- a/dspace-api/src/main/java/org/dspace/importer/external/ror/service/RorImportMetadataSourceServiceImpl.java +++ b/dspace-api/src/main/java/org/dspace/importer/external/ror/service/RorImportMetadataSourceServiceImpl.java @@ -15,11 +15,11 @@ import java.util.List; import java.util.Map; import java.util.concurrent.Callable; -import javax.el.MethodNotFoundException; import com.fasterxml.jackson.core.JsonProcessingException; import com.fasterxml.jackson.databind.JsonNode; import com.fasterxml.jackson.databind.ObjectMapper; +import jakarta.el.MethodNotFoundException; import org.apache.commons.collections.CollectionUtils; import org.apache.commons.lang3.StringUtils; import org.apache.http.client.utils.URIBuilder; diff --git a/dspace-api/src/main/java/org/dspace/importer/external/scielo/service/ScieloFieldMapping.java b/dspace-api/src/main/java/org/dspace/importer/external/scielo/service/ScieloFieldMapping.java index 0d7183a1f058..f8c4f93a1757 100644 --- a/dspace-api/src/main/java/org/dspace/importer/external/scielo/service/ScieloFieldMapping.java +++ b/dspace-api/src/main/java/org/dspace/importer/external/scielo/service/ScieloFieldMapping.java @@ -7,8 +7,8 @@ */ package org.dspace.importer.external.scielo.service; import java.util.Map; -import javax.annotation.Resource; +import jakarta.annotation.Resource; import org.dspace.importer.external.metadatamapping.AbstractMetadataFieldMapping; /** diff --git a/dspace-api/src/main/java/org/dspace/importer/external/scielo/service/ScieloImportMetadataSourceServiceImpl.java b/dspace-api/src/main/java/org/dspace/importer/external/scielo/service/ScieloImportMetadataSourceServiceImpl.java index 4f83ffe978f7..ce0c20435ecf 100644 --- a/dspace-api/src/main/java/org/dspace/importer/external/scielo/service/ScieloImportMetadataSourceServiceImpl.java +++ b/dspace-api/src/main/java/org/dspace/importer/external/scielo/service/ScieloImportMetadataSourceServiceImpl.java @@ -20,9 +20,9 @@ import java.util.concurrent.Callable; import java.util.regex.Matcher; import java.util.regex.Pattern; -import javax.el.MethodNotFoundException; -import javax.ws.rs.BadRequestException; +import jakarta.el.MethodNotFoundException; +import jakarta.ws.rs.BadRequestException; import org.apache.commons.collections4.CollectionUtils; import org.apache.http.client.utils.URIBuilder; import org.dspace.content.Item; diff --git a/dspace-api/src/main/java/org/dspace/importer/external/scopus/service/ScopusFieldMapping.java b/dspace-api/src/main/java/org/dspace/importer/external/scopus/service/ScopusFieldMapping.java index c8143339b483..93e9753c42d5 100644 --- a/dspace-api/src/main/java/org/dspace/importer/external/scopus/service/ScopusFieldMapping.java +++ b/dspace-api/src/main/java/org/dspace/importer/external/scopus/service/ScopusFieldMapping.java @@ -8,8 +8,8 @@ package org.dspace.importer.external.scopus.service; import java.util.Map; -import javax.annotation.Resource; +import jakarta.annotation.Resource; import org.dspace.importer.external.metadatamapping.AbstractMetadataFieldMapping; diff --git a/dspace-api/src/main/java/org/dspace/importer/external/scopus/service/ScopusImportMetadataSourceServiceImpl.java b/dspace-api/src/main/java/org/dspace/importer/external/scopus/service/ScopusImportMetadataSourceServiceImpl.java index 273a3455a78c..39b2be7ad5f8 100644 --- a/dspace-api/src/main/java/org/dspace/importer/external/scopus/service/ScopusImportMetadataSourceServiceImpl.java +++ b/dspace-api/src/main/java/org/dspace/importer/external/scopus/service/ScopusImportMetadataSourceServiceImpl.java @@ -14,6 +14,7 @@ import java.util.ArrayList; import java.util.Arrays; import java.util.Collection; +import java.util.Collections; import java.util.HashMap; import java.util.List; import java.util.Map; @@ -21,9 +22,11 @@ import java.util.concurrent.Callable; import java.util.regex.Matcher; import java.util.regex.Pattern; -import javax.el.MethodNotFoundException; +import jakarta.el.MethodNotFoundException; import org.apache.commons.lang3.StringUtils; +import org.apache.logging.log4j.LogManager; +import org.apache.logging.log4j.Logger; import org.dspace.content.Item; import org.dspace.importer.external.datamodel.ImportRecord; import org.dspace.importer.external.datamodel.Query; @@ -62,6 +65,8 @@ public class ScopusImportMetadataSourceServiceImpl extends AbstractImportMetadat @Autowired private LiveImportClient liveImportClient; + private final static Logger log = LogManager.getLogger(); + public LiveImportClient getLiveImportClient() { return liveImportClient; } @@ -251,6 +256,7 @@ public List call() throws Exception { if (StringUtils.isEmpty(response)) { return results; } + List elements = splitToRecords(response); for (Element record : elements) { results.add(transformSourceRecords(record)); @@ -313,6 +319,7 @@ public List call() throws Exception { if (StringUtils.isEmpty(response)) { return results; } + List elements = splitToRecords(response); for (Element record : elements) { results.add(transformSourceRecords(record)); @@ -361,6 +368,7 @@ public List call() throws Exception { if (StringUtils.isEmpty(response)) { return results; } + List elements = splitToRecords(response); for (Element record : elements) { results.add(transformSourceRecords(record)); @@ -395,10 +403,16 @@ private List splitToRecords(String recordsSrc) { saxBuilder.setFeature("http://apache.org/xml/features/disallow-doctype-decl",true); Document document = saxBuilder.build(new StringReader(recordsSrc)); Element root = document.getRootElement(); - List records = root.getChildren("entry",Namespace.getNamespace("http://www.w3.org/2005/Atom")); + String totalResults = root.getChildText("totalResults", Namespace.getNamespace("http://a9.com/-/spec/opensearch/1.1/")); + if (totalResults != null && "0".equals(totalResults)) { + log.debug("got Scopus API with empty response"); + return Collections.emptyList(); + } + List records = root.getChildren("entry", Namespace.getNamespace("http://www.w3.org/2005/Atom")); return records; } catch (JDOMException | IOException e) { - return new ArrayList(); + log.warn("got unexpected XML response from Scopus API: " + e.getMessage()); + return Collections.emptyList(); } } @@ -434,4 +448,4 @@ public void setInstKey(String instKey) { this.instKey = instKey; } -} \ No newline at end of file +} diff --git a/dspace-api/src/main/java/org/dspace/importer/external/service/DoiCheck.java b/dspace-api/src/main/java/org/dspace/importer/external/service/DoiCheck.java index 3aa760eff39e..b690c627c85e 100644 --- a/dspace-api/src/main/java/org/dspace/importer/external/service/DoiCheck.java +++ b/dspace-api/src/main/java/org/dspace/importer/external/service/DoiCheck.java @@ -20,7 +20,16 @@ */ public class DoiCheck { - private static final List DOI_PREFIXES = Arrays.asList("http://dx.doi.org/", "https://dx.doi.org/"); + private static final List DOI_PREFIXES = Arrays.asList( + "http://dx.doi.org/", + "https://dx.doi.org/", + "http://www-dx.doi.org/", + "https://www-dx.doi.org/", + "http://doi.org/", + "https://doi.org/", + "www.dx.doi.org/", + "dx.doi.org/", + "doi:"); private static final Pattern PATTERN = Pattern.compile("10.\\d{4,9}/[-._;()/:A-Z0-9]+" + "|10.1002/[^\\s]+" + diff --git a/dspace-api/src/main/java/org/dspace/importer/external/service/components/AbstractRemoteMetadataSource.java b/dspace-api/src/main/java/org/dspace/importer/external/service/components/AbstractRemoteMetadataSource.java index 29801433e3b3..e15ffff6e6bb 100644 --- a/dspace-api/src/main/java/org/dspace/importer/external/service/components/AbstractRemoteMetadataSource.java +++ b/dspace-api/src/main/java/org/dspace/importer/external/service/components/AbstractRemoteMetadataSource.java @@ -14,8 +14,8 @@ import java.util.UUID; import java.util.concurrent.Callable; import java.util.concurrent.locks.ReentrantLock; -import javax.annotation.Resource; +import jakarta.annotation.Resource; import org.apache.logging.log4j.Logger; import org.dspace.importer.external.exception.MetadataSourceException; import org.dspace.importer.external.exception.SourceExceptionHandler; @@ -167,9 +167,9 @@ protected T retry(Callable callable) throws MetadataSourceException { } catch (Exception e) { throwSourceException(retry, e, operationId); } - log.info("operation " + operationId + " started"); + log.debug("Operation {} started. Calling {}", operationId, callable.getClass().getName()); T response = callable.call(); - log.info("operation " + operationId + " successful"); + log.debug("Operation {} successful", operationId); return response; } catch (Exception e) { this.error = e; @@ -180,7 +180,8 @@ protected T retry(Callable callable) throws MetadataSourceException { // No MetadataSourceException has interrupted the loop retry++; - log.warn("Error in trying operation " + operationId + " " + retry + " " + warning + ", retrying !", e); + log.warn("Error in calling {} in operation {} {} {}, retrying!", callable.getClass().getName(), + operationId, retry, warning, e); } finally { this.lastRequest = System.currentTimeMillis(); diff --git a/dspace-api/src/main/java/org/dspace/importer/external/vufind/VuFindImportMetadataSourceServiceImpl.java b/dspace-api/src/main/java/org/dspace/importer/external/vufind/VuFindImportMetadataSourceServiceImpl.java index 1b942a7f1525..27cccefde57e 100644 --- a/dspace-api/src/main/java/org/dspace/importer/external/vufind/VuFindImportMetadataSourceServiceImpl.java +++ b/dspace-api/src/main/java/org/dspace/importer/external/vufind/VuFindImportMetadataSourceServiceImpl.java @@ -15,11 +15,11 @@ import java.util.Map; import java.util.Objects; import java.util.concurrent.Callable; -import javax.el.MethodNotFoundException; import com.fasterxml.jackson.core.JsonProcessingException; import com.fasterxml.jackson.databind.JsonNode; import com.fasterxml.jackson.databind.ObjectMapper; +import jakarta.el.MethodNotFoundException; import org.apache.commons.lang3.StringUtils; import org.apache.http.client.utils.URIBuilder; import org.apache.logging.log4j.LogManager; diff --git a/dspace-api/src/main/java/org/dspace/importer/external/vufind/metadatamapping/VuFindFieldMapping.java b/dspace-api/src/main/java/org/dspace/importer/external/vufind/metadatamapping/VuFindFieldMapping.java index b504b18d34f9..502e80cfdaf0 100644 --- a/dspace-api/src/main/java/org/dspace/importer/external/vufind/metadatamapping/VuFindFieldMapping.java +++ b/dspace-api/src/main/java/org/dspace/importer/external/vufind/metadatamapping/VuFindFieldMapping.java @@ -8,8 +8,8 @@ package org.dspace.importer.external.vufind.metadatamapping; import java.util.Map; -import javax.annotation.Resource; +import jakarta.annotation.Resource; import org.dspace.importer.external.metadatamapping.AbstractMetadataFieldMapping; /** diff --git a/dspace-api/src/main/java/org/dspace/importer/external/wos/service/WOSFieldMapping.java b/dspace-api/src/main/java/org/dspace/importer/external/wos/service/WOSFieldMapping.java index be4acfbcea8c..6cf58fdd7bc9 100644 --- a/dspace-api/src/main/java/org/dspace/importer/external/wos/service/WOSFieldMapping.java +++ b/dspace-api/src/main/java/org/dspace/importer/external/wos/service/WOSFieldMapping.java @@ -7,8 +7,8 @@ */ package org.dspace.importer.external.wos.service; import java.util.Map; -import javax.annotation.Resource; +import jakarta.annotation.Resource; import org.dspace.importer.external.metadatamapping.AbstractMetadataFieldMapping; /** diff --git a/dspace-api/src/main/java/org/dspace/importer/external/wos/service/WOSImportMetadataSourceServiceImpl.java b/dspace-api/src/main/java/org/dspace/importer/external/wos/service/WOSImportMetadataSourceServiceImpl.java index a2e8e221f894..b1b9fde76912 100644 --- a/dspace-api/src/main/java/org/dspace/importer/external/wos/service/WOSImportMetadataSourceServiceImpl.java +++ b/dspace-api/src/main/java/org/dspace/importer/external/wos/service/WOSImportMetadataSourceServiceImpl.java @@ -21,8 +21,8 @@ import java.util.concurrent.Callable; import java.util.regex.Matcher; import java.util.regex.Pattern; -import javax.el.MethodNotFoundException; +import jakarta.el.MethodNotFoundException; import org.apache.commons.collections.CollectionUtils; import org.apache.commons.lang3.StringUtils; import org.apache.logging.log4j.LogManager; diff --git a/dspace-api/src/main/java/org/dspace/orcid/OrcidHistory.java b/dspace-api/src/main/java/org/dspace/orcid/OrcidHistory.java index 07a79384c77c..4665fe4428be 100644 --- a/dspace-api/src/main/java/org/dspace/orcid/OrcidHistory.java +++ b/dspace-api/src/main/java/org/dspace/orcid/OrcidHistory.java @@ -8,24 +8,23 @@ package org.dspace.orcid; import java.util.Date; -import javax.persistence.Column; -import javax.persistence.Entity; -import javax.persistence.EnumType; -import javax.persistence.Enumerated; -import javax.persistence.GeneratedValue; -import javax.persistence.GenerationType; -import javax.persistence.Id; -import javax.persistence.JoinColumn; -import javax.persistence.Lob; -import javax.persistence.ManyToOne; -import javax.persistence.SequenceGenerator; -import javax.persistence.Table; -import javax.persistence.Temporal; -import javax.persistence.TemporalType; +import jakarta.persistence.Column; +import jakarta.persistence.Entity; +import jakarta.persistence.EnumType; +import jakarta.persistence.Enumerated; +import jakarta.persistence.GeneratedValue; +import jakarta.persistence.GenerationType; +import jakarta.persistence.Id; +import jakarta.persistence.JoinColumn; +import jakarta.persistence.ManyToOne; +import jakarta.persistence.SequenceGenerator; +import jakarta.persistence.Table; +import jakarta.persistence.Temporal; +import jakarta.persistence.TemporalType; import org.dspace.content.Item; import org.dspace.core.ReloadableEntity; -import org.hibernate.annotations.Type; +import org.hibernate.Length; /** * The ORCID history entity that it contains information relating to an attempt @@ -79,18 +78,14 @@ public class OrcidHistory implements ReloadableEntity { /** * A description of the synchronized resource. */ - @Lob - @Type(type = "org.hibernate.type.TextType") - @Column(name = "description") + @Column(name = "description", length = Length.LONG32) private String description; /** * The signature of the synchronized metadata. This is used when the entity is * the owner itself. */ - @Lob - @Type(type = "org.hibernate.type.TextType") - @Column(name = "metadata") + @Column(name = "metadata", length = Length.LONG32) private String metadata; /** @@ -103,9 +98,7 @@ public class OrcidHistory implements ReloadableEntity { /** * The response message incoming from ORCID. */ - @Lob - @Type(type = "org.hibernate.type.TextType") - @Column(name = "response_message") + @Column(name = "response_message", length = Length.LONG32) private String responseMessage; /** diff --git a/dspace-api/src/main/java/org/dspace/orcid/OrcidQueue.java b/dspace-api/src/main/java/org/dspace/orcid/OrcidQueue.java index 65b66cd20c3e..dfcb531401d7 100644 --- a/dspace-api/src/main/java/org/dspace/orcid/OrcidQueue.java +++ b/dspace-api/src/main/java/org/dspace/orcid/OrcidQueue.java @@ -11,22 +11,21 @@ import static org.apache.commons.lang3.StringUtils.isNotEmpty; import java.util.Objects; -import javax.persistence.Column; -import javax.persistence.Entity; -import javax.persistence.EnumType; -import javax.persistence.Enumerated; -import javax.persistence.GeneratedValue; -import javax.persistence.GenerationType; -import javax.persistence.Id; -import javax.persistence.JoinColumn; -import javax.persistence.Lob; -import javax.persistence.ManyToOne; -import javax.persistence.SequenceGenerator; -import javax.persistence.Table; +import jakarta.persistence.Column; +import jakarta.persistence.Entity; +import jakarta.persistence.EnumType; +import jakarta.persistence.Enumerated; +import jakarta.persistence.GeneratedValue; +import jakarta.persistence.GenerationType; +import jakarta.persistence.Id; +import jakarta.persistence.JoinColumn; +import jakarta.persistence.ManyToOne; +import jakarta.persistence.SequenceGenerator; +import jakarta.persistence.Table; import org.dspace.content.Item; import org.dspace.core.ReloadableEntity; -import org.hibernate.annotations.Type; +import org.hibernate.Length; /** * Entity that model a record on the ORCID synchronization queue. Each record in @@ -64,9 +63,7 @@ public class OrcidQueue implements ReloadableEntity { /** * A description of the resource to be synchronized. */ - @Lob - @Type(type = "org.hibernate.type.TextType") - @Column(name = "description") + @Column(name = "description", length = Length.LONG32) private String description; /** @@ -87,9 +84,7 @@ public class OrcidQueue implements ReloadableEntity { * The signature of the metadata to be synchronized. This is used when the * entity is the owner itself. */ - @Lob - @Column(name = "metadata") - @Type(type = "org.hibernate.type.TextType") + @Column(name = "metadata", length = Length.LONG32) private String metadata; /** diff --git a/dspace-api/src/main/java/org/dspace/orcid/OrcidToken.java b/dspace-api/src/main/java/org/dspace/orcid/OrcidToken.java index def289daf41e..3e54a68a23ec 100644 --- a/dspace-api/src/main/java/org/dspace/orcid/OrcidToken.java +++ b/dspace-api/src/main/java/org/dspace/orcid/OrcidToken.java @@ -7,17 +7,16 @@ */ package org.dspace.orcid; -import javax.persistence.Column; -import javax.persistence.Entity; -import javax.persistence.FetchType; -import javax.persistence.GeneratedValue; -import javax.persistence.GenerationType; -import javax.persistence.Id; -import javax.persistence.JoinColumn; -import javax.persistence.OneToOne; -import javax.persistence.SequenceGenerator; -import javax.persistence.Table; - +import jakarta.persistence.Column; +import jakarta.persistence.Entity; +import jakarta.persistence.FetchType; +import jakarta.persistence.GeneratedValue; +import jakarta.persistence.GenerationType; +import jakarta.persistence.Id; +import jakarta.persistence.JoinColumn; +import jakarta.persistence.OneToOne; +import jakarta.persistence.SequenceGenerator; +import jakarta.persistence.Table; import org.dspace.content.Item; import org.dspace.core.ReloadableEntity; import org.dspace.eperson.EPerson; diff --git a/dspace-api/src/main/java/org/dspace/orcid/client/OrcidClientImpl.java b/dspace-api/src/main/java/org/dspace/orcid/client/OrcidClientImpl.java index 9cdbb0fb036c..82afa27cd440 100644 --- a/dspace-api/src/main/java/org/dspace/orcid/client/OrcidClientImpl.java +++ b/dspace-api/src/main/java/org/dspace/orcid/client/OrcidClientImpl.java @@ -23,14 +23,14 @@ import java.util.List; import java.util.Map; import java.util.Optional; -import javax.xml.bind.JAXBContext; -import javax.xml.bind.JAXBException; -import javax.xml.bind.Marshaller; -import javax.xml.bind.Unmarshaller; import javax.xml.stream.XMLInputFactory; import javax.xml.stream.XMLStreamReader; import com.fasterxml.jackson.databind.ObjectMapper; +import jakarta.xml.bind.JAXBContext; +import jakarta.xml.bind.JAXBException; +import jakarta.xml.bind.Marshaller; +import jakarta.xml.bind.Unmarshaller; import org.apache.commons.io.IOUtils; import org.apache.http.Header; import org.apache.http.HttpEntity; diff --git a/dspace-api/src/main/java/org/dspace/orcid/dao/impl/OrcidHistoryDAOImpl.java b/dspace-api/src/main/java/org/dspace/orcid/dao/impl/OrcidHistoryDAOImpl.java index 0b2c7099ffac..fe300751d1dd 100644 --- a/dspace-api/src/main/java/org/dspace/orcid/dao/impl/OrcidHistoryDAOImpl.java +++ b/dspace-api/src/main/java/org/dspace/orcid/dao/impl/OrcidHistoryDAOImpl.java @@ -10,8 +10,8 @@ import java.sql.SQLException; import java.util.List; import java.util.UUID; -import javax.persistence.Query; +import jakarta.persistence.Query; import org.dspace.content.Item; import org.dspace.core.AbstractHibernateDAO; import org.dspace.core.Context; diff --git a/dspace-api/src/main/java/org/dspace/orcid/dao/impl/OrcidQueueDAOImpl.java b/dspace-api/src/main/java/org/dspace/orcid/dao/impl/OrcidQueueDAOImpl.java index 8e941b056535..091e59750517 100644 --- a/dspace-api/src/main/java/org/dspace/orcid/dao/impl/OrcidQueueDAOImpl.java +++ b/dspace-api/src/main/java/org/dspace/orcid/dao/impl/OrcidQueueDAOImpl.java @@ -10,8 +10,8 @@ import java.sql.SQLException; import java.util.List; import java.util.UUID; -import javax.persistence.Query; +import jakarta.persistence.Query; import org.dspace.content.Item; import org.dspace.core.AbstractHibernateDAO; import org.dspace.core.Context; diff --git a/dspace-api/src/main/java/org/dspace/orcid/dao/impl/OrcidTokenDAOImpl.java b/dspace-api/src/main/java/org/dspace/orcid/dao/impl/OrcidTokenDAOImpl.java index 01b03fc35455..f94f5ad3a44f 100644 --- a/dspace-api/src/main/java/org/dspace/orcid/dao/impl/OrcidTokenDAOImpl.java +++ b/dspace-api/src/main/java/org/dspace/orcid/dao/impl/OrcidTokenDAOImpl.java @@ -8,8 +8,8 @@ package org.dspace.orcid.dao.impl; import java.sql.SQLException; -import javax.persistence.Query; +import jakarta.persistence.Query; import org.dspace.content.Item; import org.dspace.core.AbstractHibernateDAO; import org.dspace.core.Context; diff --git a/dspace-api/src/main/java/org/dspace/orcid/service/impl/OrcidSynchronizationServiceImpl.java b/dspace-api/src/main/java/org/dspace/orcid/service/impl/OrcidSynchronizationServiceImpl.java index 065dbc5ee343..6b9b8167a966 100644 --- a/dspace-api/src/main/java/org/dspace/orcid/service/impl/OrcidSynchronizationServiceImpl.java +++ b/dspace-api/src/main/java/org/dspace/orcid/service/impl/OrcidSynchronizationServiceImpl.java @@ -128,6 +128,10 @@ public void unlinkProfile(Context context, Item profile) throws SQLException { itemService.clearMetadata(context, profile, "dspace", "orcid", "scope", Item.ANY); itemService.clearMetadata(context, profile, "dspace", "orcid", "authenticated", Item.ANY); + if (!configurationService.getBooleanProperty("orcid.disconnection.remain-sync", false)) { + clearSynchronizationSettings(context, profile); + } + orcidTokenService.deleteByProfileItem(context, profile); updateItem(context, profile); @@ -296,6 +300,17 @@ private boolean updatePreferenceForSynchronizingWithOrcid(Context context, Item } + private void clearSynchronizationSettings(Context context, Item profile) + throws SQLException { + itemService.clearMetadata(context, profile, "dspace", "orcid", "sync-mode", Item.ANY); + itemService.clearMetadata(context, profile, "dspace", "orcid", "sync-profile", Item.ANY); + + for (OrcidEntityType entityType : OrcidEntityType.values()) { + itemService.clearMetadata(context, profile, "dspace", "orcid", + "sync-" + entityType.name().toLowerCase() + "s", Item.ANY); + } + } + private boolean containsSameValues(List firstList, List secondList) { return new HashSet<>(firstList).equals(new HashSet<>(secondList)); } diff --git a/dspace-api/src/main/java/org/dspace/profile/ResearcherProfileServiceImpl.java b/dspace-api/src/main/java/org/dspace/profile/ResearcherProfileServiceImpl.java index 0cd7829c3e16..f3f3798ddc52 100644 --- a/dspace-api/src/main/java/org/dspace/profile/ResearcherProfileServiceImpl.java +++ b/dspace-api/src/main/java/org/dspace/profile/ResearcherProfileServiceImpl.java @@ -24,8 +24,8 @@ import java.util.Objects; import java.util.Optional; import java.util.UUID; -import javax.annotation.PostConstruct; +import jakarta.annotation.PostConstruct; import org.apache.commons.collections4.CollectionUtils; import org.apache.commons.lang.StringUtils; import org.apache.logging.log4j.LogManager; diff --git a/dspace-api/src/main/java/org/dspace/qaevent/dao/impl/QAEventsDAOImpl.java b/dspace-api/src/main/java/org/dspace/qaevent/dao/impl/QAEventsDAOImpl.java index ac9b96045e42..2dbc47692010 100644 --- a/dspace-api/src/main/java/org/dspace/qaevent/dao/impl/QAEventsDAOImpl.java +++ b/dspace-api/src/main/java/org/dspace/qaevent/dao/impl/QAEventsDAOImpl.java @@ -10,8 +10,8 @@ import java.sql.SQLException; import java.util.Date; import java.util.List; -import javax.persistence.Query; +import jakarta.persistence.Query; import org.dspace.content.Item; import org.dspace.content.QAEventProcessed; import org.dspace.core.AbstractHibernateDAO; diff --git a/dspace-api/src/main/java/org/dspace/rdf/RDFConsumer.java b/dspace-api/src/main/java/org/dspace/rdf/RDFConsumer.java index 76ae0cd2d2e6..b37fb7824a19 100644 --- a/dspace-api/src/main/java/org/dspace/rdf/RDFConsumer.java +++ b/dspace-api/src/main/java/org/dspace/rdf/RDFConsumer.java @@ -16,7 +16,7 @@ import java.util.NoSuchElementException; import java.util.UUID; -import com.hp.hpl.jena.rdf.model.Model; +import org.apache.jena.rdf.model.Model; import org.apache.logging.log4j.Logger; import org.dspace.authorize.AuthorizeException; import org.dspace.content.Bitstream; diff --git a/dspace-api/src/main/java/org/dspace/rdf/RDFUtil.java b/dspace-api/src/main/java/org/dspace/rdf/RDFUtil.java index 1e9744aec5c5..ef381febe701 100644 --- a/dspace-api/src/main/java/org/dspace/rdf/RDFUtil.java +++ b/dspace-api/src/main/java/org/dspace/rdf/RDFUtil.java @@ -12,8 +12,8 @@ import java.util.List; import java.util.UUID; -import com.hp.hpl.jena.rdf.model.Model; import org.apache.commons.lang3.StringUtils; +import org.apache.jena.rdf.model.Model; import org.apache.logging.log4j.Logger; import org.dspace.authorize.AuthorizeException; import org.dspace.authorize.factory.AuthorizeServiceFactory; diff --git a/dspace-api/src/main/java/org/dspace/rdf/RDFizer.java b/dspace-api/src/main/java/org/dspace/rdf/RDFizer.java index ac4e341c5e75..980aaa4b11fa 100644 --- a/dspace-api/src/main/java/org/dspace/rdf/RDFizer.java +++ b/dspace-api/src/main/java/org/dspace/rdf/RDFizer.java @@ -16,7 +16,6 @@ import java.util.UUID; import java.util.concurrent.CopyOnWriteArraySet; -import com.hp.hpl.jena.rdf.model.Model; import org.apache.commons.cli.CommandLine; import org.apache.commons.cli.CommandLineParser; import org.apache.commons.cli.DefaultParser; @@ -25,6 +24,7 @@ import org.apache.commons.cli.Options; import org.apache.commons.cli.ParseException; import org.apache.commons.lang3.StringUtils; +import org.apache.jena.rdf.model.Model; import org.apache.logging.log4j.Logger; import org.dspace.authorize.AuthorizeException; import org.dspace.content.Collection; diff --git a/dspace-api/src/main/java/org/dspace/rdf/conversion/ConverterPlugin.java b/dspace-api/src/main/java/org/dspace/rdf/conversion/ConverterPlugin.java index f0ad88c5827d..fa00374f9dd0 100644 --- a/dspace-api/src/main/java/org/dspace/rdf/conversion/ConverterPlugin.java +++ b/dspace-api/src/main/java/org/dspace/rdf/conversion/ConverterPlugin.java @@ -10,7 +10,7 @@ import java.sql.SQLException; -import com.hp.hpl.jena.rdf.model.Model; +import org.apache.jena.rdf.model.Model; import org.dspace.authorize.AuthorizeException; import org.dspace.content.DSpaceObject; import org.dspace.core.Context; diff --git a/dspace-api/src/main/java/org/dspace/rdf/conversion/DMRM.java b/dspace-api/src/main/java/org/dspace/rdf/conversion/DMRM.java index 0d0f955e0ad3..f253e4025b6a 100644 --- a/dspace-api/src/main/java/org/dspace/rdf/conversion/DMRM.java +++ b/dspace-api/src/main/java/org/dspace/rdf/conversion/DMRM.java @@ -8,10 +8,10 @@ package org.dspace.rdf.conversion; -import com.hp.hpl.jena.rdf.model.Model; -import com.hp.hpl.jena.rdf.model.ModelFactory; -import com.hp.hpl.jena.rdf.model.Property; -import com.hp.hpl.jena.rdf.model.Resource; +import org.apache.jena.rdf.model.Model; +import org.apache.jena.rdf.model.ModelFactory; +import org.apache.jena.rdf.model.Property; +import org.apache.jena.rdf.model.Resource; /** * Schema for DSpace Metadata RDF Mappings. diff --git a/dspace-api/src/main/java/org/dspace/rdf/conversion/MetadataConverterPlugin.java b/dspace-api/src/main/java/org/dspace/rdf/conversion/MetadataConverterPlugin.java index 0367556b8eab..bd2d24b28a81 100644 --- a/dspace-api/src/main/java/org/dspace/rdf/conversion/MetadataConverterPlugin.java +++ b/dspace-api/src/main/java/org/dspace/rdf/conversion/MetadataConverterPlugin.java @@ -15,17 +15,17 @@ import java.util.Iterator; import java.util.List; -import com.hp.hpl.jena.rdf.model.InfModel; -import com.hp.hpl.jena.rdf.model.Model; -import com.hp.hpl.jena.rdf.model.ModelFactory; -import com.hp.hpl.jena.rdf.model.ResIterator; -import com.hp.hpl.jena.reasoner.Reasoner; -import com.hp.hpl.jena.reasoner.ReasonerRegistry; -import com.hp.hpl.jena.reasoner.ValidityReport; -import com.hp.hpl.jena.util.FileManager; -import com.hp.hpl.jena.util.FileUtils; -import com.hp.hpl.jena.vocabulary.RDF; import org.apache.commons.lang3.StringUtils; +import org.apache.jena.rdf.model.InfModel; +import org.apache.jena.rdf.model.Model; +import org.apache.jena.rdf.model.ModelFactory; +import org.apache.jena.rdf.model.ResIterator; +import org.apache.jena.reasoner.Reasoner; +import org.apache.jena.reasoner.ReasonerRegistry; +import org.apache.jena.reasoner.ValidityReport; +import org.apache.jena.util.FileManager; +import org.apache.jena.util.FileUtils; +import org.apache.jena.vocabulary.RDF; import org.apache.logging.log4j.Logger; import org.dspace.app.util.factory.UtilServiceFactory; import org.dspace.authorize.AuthorizeException; diff --git a/dspace-api/src/main/java/org/dspace/rdf/conversion/MetadataRDFMapping.java b/dspace-api/src/main/java/org/dspace/rdf/conversion/MetadataRDFMapping.java index 6286f3b87a66..5b801d699af8 100644 --- a/dspace-api/src/main/java/org/dspace/rdf/conversion/MetadataRDFMapping.java +++ b/dspace-api/src/main/java/org/dspace/rdf/conversion/MetadataRDFMapping.java @@ -14,15 +14,15 @@ import java.util.regex.Pattern; import java.util.regex.PatternSyntaxException; -import com.hp.hpl.jena.rdf.model.Literal; -import com.hp.hpl.jena.rdf.model.Model; -import com.hp.hpl.jena.rdf.model.Property; -import com.hp.hpl.jena.rdf.model.RDFNode; -import com.hp.hpl.jena.rdf.model.Resource; -import com.hp.hpl.jena.rdf.model.Statement; -import com.hp.hpl.jena.rdf.model.StmtIterator; -import com.hp.hpl.jena.vocabulary.RDF; import org.apache.commons.lang3.StringUtils; +import org.apache.jena.rdf.model.Literal; +import org.apache.jena.rdf.model.Model; +import org.apache.jena.rdf.model.Property; +import org.apache.jena.rdf.model.RDFNode; +import org.apache.jena.rdf.model.Resource; +import org.apache.jena.rdf.model.Statement; +import org.apache.jena.rdf.model.StmtIterator; +import org.apache.jena.vocabulary.RDF; import org.apache.logging.log4j.Logger; /** diff --git a/dspace-api/src/main/java/org/dspace/rdf/conversion/RDFConverter.java b/dspace-api/src/main/java/org/dspace/rdf/conversion/RDFConverter.java index d8e71856a1b3..7617355db667 100644 --- a/dspace-api/src/main/java/org/dspace/rdf/conversion/RDFConverter.java +++ b/dspace-api/src/main/java/org/dspace/rdf/conversion/RDFConverter.java @@ -10,7 +10,7 @@ import java.sql.SQLException; -import com.hp.hpl.jena.rdf.model.Model; +import org.apache.jena.rdf.model.Model; import org.dspace.authorize.AuthorizeException; import org.dspace.content.DSpaceObject; import org.dspace.core.Context; diff --git a/dspace-api/src/main/java/org/dspace/rdf/conversion/RDFConverterImpl.java b/dspace-api/src/main/java/org/dspace/rdf/conversion/RDFConverterImpl.java index 93a9b6211d57..0842bf5e40c8 100644 --- a/dspace-api/src/main/java/org/dspace/rdf/conversion/RDFConverterImpl.java +++ b/dspace-api/src/main/java/org/dspace/rdf/conversion/RDFConverterImpl.java @@ -11,8 +11,8 @@ import java.sql.SQLException; import java.util.List; -import com.hp.hpl.jena.rdf.model.Model; -import com.hp.hpl.jena.rdf.model.ModelFactory; +import org.apache.jena.rdf.model.Model; +import org.apache.jena.rdf.model.ModelFactory; import org.apache.logging.log4j.Logger; import org.dspace.authorize.AuthorizeException; import org.dspace.content.DSpaceObject; diff --git a/dspace-api/src/main/java/org/dspace/rdf/conversion/SimpleDSORelationsConverterPlugin.java b/dspace-api/src/main/java/org/dspace/rdf/conversion/SimpleDSORelationsConverterPlugin.java index 63382a7c26b0..4665625702dd 100644 --- a/dspace-api/src/main/java/org/dspace/rdf/conversion/SimpleDSORelationsConverterPlugin.java +++ b/dspace-api/src/main/java/org/dspace/rdf/conversion/SimpleDSORelationsConverterPlugin.java @@ -14,11 +14,11 @@ import java.util.Iterator; import java.util.List; -import com.hp.hpl.jena.rdf.model.Model; -import com.hp.hpl.jena.rdf.model.ModelFactory; -import com.hp.hpl.jena.util.FileManager; -import com.hp.hpl.jena.util.FileUtils; import org.apache.commons.lang3.StringUtils; +import org.apache.jena.rdf.model.Model; +import org.apache.jena.rdf.model.ModelFactory; +import org.apache.jena.util.FileManager; +import org.apache.jena.util.FileUtils; import org.apache.logging.log4j.Logger; import org.dspace.app.util.Util; import org.dspace.content.Bitstream; diff --git a/dspace-api/src/main/java/org/dspace/rdf/conversion/StaticDSOConverterPlugin.java b/dspace-api/src/main/java/org/dspace/rdf/conversion/StaticDSOConverterPlugin.java index f86af753e690..f18074a1bdfe 100644 --- a/dspace-api/src/main/java/org/dspace/rdf/conversion/StaticDSOConverterPlugin.java +++ b/dspace-api/src/main/java/org/dspace/rdf/conversion/StaticDSOConverterPlugin.java @@ -12,10 +12,10 @@ import java.io.InputStream; import java.sql.SQLException; -import com.hp.hpl.jena.rdf.model.Model; -import com.hp.hpl.jena.rdf.model.ModelFactory; -import com.hp.hpl.jena.util.FileManager; -import com.hp.hpl.jena.util.FileUtils; +import org.apache.jena.rdf.model.Model; +import org.apache.jena.rdf.model.ModelFactory; +import org.apache.jena.util.FileManager; +import org.apache.jena.util.FileUtils; import org.apache.logging.log4j.Logger; import org.dspace.content.DSpaceObject; import org.dspace.content.factory.ContentServiceFactory; diff --git a/dspace-api/src/main/java/org/dspace/rdf/negotiation/NegotiationFilter.java b/dspace-api/src/main/java/org/dspace/rdf/negotiation/NegotiationFilter.java index 998f57ca4feb..d210803ba793 100644 --- a/dspace-api/src/main/java/org/dspace/rdf/negotiation/NegotiationFilter.java +++ b/dspace-api/src/main/java/org/dspace/rdf/negotiation/NegotiationFilter.java @@ -10,15 +10,15 @@ import java.io.IOException; import java.util.regex.Matcher; import java.util.regex.Pattern; -import javax.servlet.Filter; -import javax.servlet.FilterChain; -import javax.servlet.FilterConfig; -import javax.servlet.ServletException; -import javax.servlet.ServletRequest; -import javax.servlet.ServletResponse; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; +import jakarta.servlet.Filter; +import jakarta.servlet.FilterChain; +import jakarta.servlet.FilterConfig; +import jakarta.servlet.ServletException; +import jakarta.servlet.ServletRequest; +import jakarta.servlet.ServletResponse; +import jakarta.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletResponse; import org.apache.logging.log4j.Logger; import org.dspace.rdf.RDFUtil; import org.dspace.services.factory.DSpaceServicesFactory; diff --git a/dspace-api/src/main/java/org/dspace/rdf/negotiation/Negotiator.java b/dspace-api/src/main/java/org/dspace/rdf/negotiation/Negotiator.java index d011d305b166..8d1105a5252b 100644 --- a/dspace-api/src/main/java/org/dspace/rdf/negotiation/Negotiator.java +++ b/dspace-api/src/main/java/org/dspace/rdf/negotiation/Negotiator.java @@ -12,8 +12,8 @@ import java.util.Collections; import java.util.Comparator; import java.util.Iterator; -import javax.servlet.http.HttpServletResponse; +import jakarta.servlet.http.HttpServletResponse; import org.apache.commons.lang3.StringUtils; import org.apache.commons.validator.routines.UrlValidator; import org.apache.logging.log4j.Logger; diff --git a/dspace-api/src/main/java/org/dspace/rdf/storage/RDFStorage.java b/dspace-api/src/main/java/org/dspace/rdf/storage/RDFStorage.java index 31294323c745..52bee26d76f3 100644 --- a/dspace-api/src/main/java/org/dspace/rdf/storage/RDFStorage.java +++ b/dspace-api/src/main/java/org/dspace/rdf/storage/RDFStorage.java @@ -10,7 +10,7 @@ import java.util.List; -import com.hp.hpl.jena.rdf.model.Model; +import org.apache.jena.rdf.model.Model; /** * @author Pascal-Nicolas Becker (dspace -at- pascal -hyphen- becker -dot- de) diff --git a/dspace-api/src/main/java/org/dspace/rdf/storage/RDFStorageImpl.java b/dspace-api/src/main/java/org/dspace/rdf/storage/RDFStorageImpl.java index fd84db5d5f2d..2ea5c3c88082 100644 --- a/dspace-api/src/main/java/org/dspace/rdf/storage/RDFStorageImpl.java +++ b/dspace-api/src/main/java/org/dspace/rdf/storage/RDFStorageImpl.java @@ -12,24 +12,15 @@ import java.util.Collections; import java.util.List; -import com.hp.hpl.jena.graph.Graph; -import com.hp.hpl.jena.graph.Node; -import com.hp.hpl.jena.graph.NodeFactory; -import com.hp.hpl.jena.query.Dataset; -import com.hp.hpl.jena.query.DatasetFactory; -import com.hp.hpl.jena.query.QueryExecution; -import com.hp.hpl.jena.query.QueryExecutionFactory; -import com.hp.hpl.jena.query.QuerySolution; -import com.hp.hpl.jena.query.ResultSet; -import com.hp.hpl.jena.rdf.model.Model; -import com.hp.hpl.jena.sparql.core.DatasetGraph; -import com.hp.hpl.jena.update.GraphStore; -import com.hp.hpl.jena.update.GraphStoreFactory; import org.apache.commons.lang3.StringUtils; -import org.apache.jena.atlas.web.auth.HttpAuthenticator; -import org.apache.jena.atlas.web.auth.SimpleAuthenticator; -import org.apache.jena.web.DatasetGraphAccessor; -import org.apache.jena.web.DatasetGraphAccessorHTTP; +import org.apache.jena.http.auth.AuthEnv; +import org.apache.jena.query.QueryExecution; +import org.apache.jena.query.QuerySolution; +import org.apache.jena.query.ResultSet; +import org.apache.jena.rdf.model.Model; +import org.apache.jena.rdfconnection.RDFConnection; +import org.apache.jena.rdfconnection.RDFConnectionRemote; +import org.apache.jena.sparql.exec.http.QueryExecutionHTTP; import org.apache.logging.log4j.Logger; import org.dspace.rdf.RDFUtil; import org.dspace.services.ConfigurationService; @@ -47,48 +38,35 @@ public class RDFStorageImpl @Override public void store(String uri, Model model) { - Node graphNode = NodeFactory.createURI(uri); - DatasetGraphAccessor accessor = this.getAccessor(); - Dataset ds = DatasetFactory.create(model); - DatasetGraph dsg = ds.asDatasetGraph(); - Graph g = dsg.getDefaultGraph(); - accessor.httpPut(graphNode, g); + RDFConnection connection = this.getConnection(); + connection.put(uri, model); } @Override public Model load(String uri) { - Node graphNode = NodeFactory.createURI(uri); - DatasetGraphAccessor accessor = this.getAccessor(); - Graph g = accessor.httpGet(graphNode); - if (g == null || g.isEmpty()) { - return null; - } - GraphStore gs = GraphStoreFactory.create(g); - Dataset ds = gs.toDataset(); - Model m = ds.getDefaultModel(); - return m; + RDFConnection connection = this.getConnection(); + return connection.fetch(uri); } - protected DatasetGraphAccessor getAccessor() { - DatasetGraphAccessor accessor; + protected RDFConnection getConnection() { + RDFConnection connection; if (configurationService.hasProperty(RDFUtil.STORAGE_GRAPHSTORE_LOGIN_KEY) && configurationService.hasProperty(RDFUtil.STORAGE_GRAPHSTORE_PASSWORD_KEY)) { - HttpAuthenticator httpAuthenticator = new SimpleAuthenticator( - configurationService.getProperty(RDFUtil.STORAGE_GRAPHSTORE_LOGIN_KEY), - configurationService.getProperty(RDFUtil.STORAGE_GRAPHSTORE_PASSWORD_KEY).toCharArray()); - accessor = new DatasetGraphAccessorHTTP(getGraphStoreEndpoint(), - httpAuthenticator); + AuthEnv.get() + .registerUsernamePassword(getGraphStoreEndpoint(), + configurationService.getProperty(RDFUtil.STORAGE_GRAPHSTORE_LOGIN_KEY), + configurationService.getProperty(RDFUtil.STORAGE_GRAPHSTORE_PASSWORD_KEY)); } else { log.debug("Did not found credential to use for our connection to the " + "Graph Store HTTP endpoint, trying to connect unauthenticated."); - accessor = new DatasetGraphAccessorHTTP(getGraphStoreEndpoint()); } - return accessor; + connection = RDFConnectionRemote.service(getGraphStoreEndpoint()).build(); + return connection; } @Override public void delete(String uri) { - this.getAccessor().httpDelete(NodeFactory.createURI(uri)); + this.getConnection().delete(uri); } @Override @@ -97,34 +75,30 @@ public void deleteAll() { this.delete(graph); } // clean default graph: - this.getAccessor().httpDelete(); + this.getConnection().delete(); } @Override public List getAllStoredGraphs() { String queryString = "SELECT DISTINCT ?g WHERE { GRAPH ?g { ?s ?p ?o } }"; - QueryExecution qexec; if (configurationService.hasProperty(RDFUtil.STORAGE_SPARQL_LOGIN_KEY) && configurationService.hasProperty(RDFUtil.STORAGE_SPARQL_PASSWORD_KEY)) { - HttpAuthenticator httpAuthenticator = new SimpleAuthenticator( - configurationService.getProperty(RDFUtil.STORAGE_SPARQL_LOGIN_KEY), - configurationService.getProperty(RDFUtil.STORAGE_GRAPHSTORE_PASSWORD_KEY).toCharArray()); - qexec = QueryExecutionFactory.sparqlService(getSparqlEndpoint(), - queryString, httpAuthenticator); - } else { - qexec = QueryExecutionFactory.sparqlService(getSparqlEndpoint(), - queryString); + AuthEnv.get() + .registerUsernamePassword(getSparqlEndpoint(), + configurationService.getProperty(RDFUtil.STORAGE_SPARQL_LOGIN_KEY), + configurationService.getProperty(RDFUtil.STORAGE_GRAPHSTORE_PASSWORD_KEY)); } - ResultSet rs = qexec.execSelect(); - List graphs = Collections.synchronizedList(new ArrayList()); - while (rs.hasNext()) { - QuerySolution solution = rs.next(); - if (solution.contains("g")) { - graphs.add(solution.get("g").asResource().getURI()); + List graphs = Collections.synchronizedList(new ArrayList<>()); + try (QueryExecution qexec = QueryExecutionHTTP.service(getSparqlEndpoint()).queryString(queryString).build()) { + ResultSet rs = qexec.execSelect(); + while (rs.hasNext()) { + QuerySolution solution = rs.next(); + if (solution.contains("g")) { + graphs.add(solution.get("g").asResource().getURI()); + } } } - qexec.close(); return graphs; } diff --git a/dspace-api/src/main/java/org/dspace/scripts/Process.java b/dspace-api/src/main/java/org/dspace/scripts/Process.java index 049b7845da50..b2d1bcbbcb17 100644 --- a/dspace-api/src/main/java/org/dspace/scripts/Process.java +++ b/dspace-api/src/main/java/org/dspace/scripts/Process.java @@ -10,25 +10,24 @@ import java.util.ArrayList; import java.util.Date; import java.util.List; -import javax.persistence.CascadeType; -import javax.persistence.Column; -import javax.persistence.Entity; -import javax.persistence.EnumType; -import javax.persistence.Enumerated; -import javax.persistence.FetchType; -import javax.persistence.GeneratedValue; -import javax.persistence.GenerationType; -import javax.persistence.Id; -import javax.persistence.JoinColumn; -import javax.persistence.JoinTable; -import javax.persistence.Lob; -import javax.persistence.ManyToMany; -import javax.persistence.ManyToOne; -import javax.persistence.SequenceGenerator; -import javax.persistence.Table; -import javax.persistence.Temporal; -import javax.persistence.TemporalType; +import jakarta.persistence.CascadeType; +import jakarta.persistence.Column; +import jakarta.persistence.Entity; +import jakarta.persistence.EnumType; +import jakarta.persistence.Enumerated; +import jakarta.persistence.FetchType; +import jakarta.persistence.GeneratedValue; +import jakarta.persistence.GenerationType; +import jakarta.persistence.Id; +import jakarta.persistence.JoinColumn; +import jakarta.persistence.JoinTable; +import jakarta.persistence.ManyToMany; +import jakarta.persistence.ManyToOne; +import jakarta.persistence.SequenceGenerator; +import jakarta.persistence.Table; +import jakarta.persistence.Temporal; +import jakarta.persistence.TemporalType; import org.apache.commons.lang3.builder.EqualsBuilder; import org.apache.commons.lang3.builder.HashCodeBuilder; import org.dspace.content.Bitstream; @@ -36,7 +35,7 @@ import org.dspace.core.ReloadableEntity; import org.dspace.eperson.EPerson; import org.dspace.eperson.Group; -import org.hibernate.annotations.Type; +import org.hibernate.Length; /** * This class is the DB Entity representation of the Process object to be stored in the Database @@ -51,8 +50,8 @@ public class Process implements ReloadableEntity { @Column(name = "process_id", unique = true, nullable = false) private Integer processId; - @ManyToOne - @JoinColumn(name = "user_id", nullable = false) + @ManyToOne(fetch = FetchType.LAZY) + @JoinColumn(name = "user_id") private EPerson ePerson; @Column(name = "start_time") @@ -70,9 +69,7 @@ public class Process implements ReloadableEntity { @Enumerated(EnumType.STRING) private ProcessStatus processStatus; - @Lob - @Type(type = "org.hibernate.type.TextType") - @Column(name = "parameters") + @Column(name = "parameters", length = Length.LONG32) private String parameters; @ManyToMany(fetch = FetchType.LAZY) diff --git a/dspace-api/src/main/java/org/dspace/scripts/configuration/ScriptConfiguration.java b/dspace-api/src/main/java/org/dspace/scripts/configuration/ScriptConfiguration.java index 2247f6dc9871..bbedab04e278 100644 --- a/dspace-api/src/main/java/org/dspace/scripts/configuration/ScriptConfiguration.java +++ b/dspace-api/src/main/java/org/dspace/scripts/configuration/ScriptConfiguration.java @@ -108,6 +108,7 @@ public boolean isAllowedToExecute(Context context, List 0) { /** - * The code below creates a query that will allow only records which do not have a bundlename + * The code below creates a query that will allow only records which do not have a bundle name * (items, collections, ...) or bitstreams that have a configured bundle name */ StringBuilder bundleQuery = new StringBuilder(); @@ -1312,32 +1259,6 @@ public QueryResponse query(String query, String filterQuery, String facetField, return response; } - - /** - * String of IP and Ranges in IPTable as a Solr Query - */ - protected String filterQuery = null; - - @Override - public String getIgnoreSpiderIPs() { - if (filterQuery == null) { - StringBuilder query = new StringBuilder(); - boolean first = true; - for (String ip : SpiderDetector.getSpiderIpAddresses()) { - if (first) { - query.append(" AND "); - first = false; - } - - query.append(" NOT(ip: ").append(ip).append(")"); - } - filterQuery = query.toString(); - } - - return filterQuery; - - } - @Override public void shardSolrIndex() throws IOException, SolrServerException { if (!(solr instanceof HttpSolrClient)) { @@ -1824,6 +1745,7 @@ protected synchronized void initSolrYearCores() { statisticYearCoresInit = true; } + @Override public Object anonymizeIp(String ip) throws UnknownHostException { InetAddress address = InetAddress.getByName(ip); if (address instanceof Inet4Address) { diff --git a/dspace-api/src/main/java/org/dspace/statistics/SolrStatisticsCore.java b/dspace-api/src/main/java/org/dspace/statistics/SolrStatisticsCore.java index 9ad72cbf313b..d7d249082bb4 100644 --- a/dspace-api/src/main/java/org/dspace/statistics/SolrStatisticsCore.java +++ b/dspace-api/src/main/java/org/dspace/statistics/SolrStatisticsCore.java @@ -9,8 +9,7 @@ import static org.apache.logging.log4j.LogManager.getLogger; -import javax.inject.Named; - +import jakarta.inject.Named; import org.apache.logging.log4j.Logger; import org.apache.solr.client.solrj.SolrClient; import org.apache.solr.client.solrj.impl.HttpSolrClient; @@ -28,10 +27,10 @@ public class SolrStatisticsCore { protected SolrClient solr = null; @Autowired - private ConfigurationService configurationService; + protected ConfigurationService configurationService; @Autowired @Named("solrHttpConnectionPoolService") - private HttpConnectionPoolService httpConnectionPoolService; + protected HttpConnectionPoolService httpConnectionPoolService; /** * Returns the {@link SolrClient} for the Statistics core. diff --git a/dspace-api/src/main/java/org/dspace/statistics/export/OpenURLTracker.java b/dspace-api/src/main/java/org/dspace/statistics/export/OpenURLTracker.java index b853f255e841..47809ad2309b 100644 --- a/dspace-api/src/main/java/org/dspace/statistics/export/OpenURLTracker.java +++ b/dspace-api/src/main/java/org/dspace/statistics/export/OpenURLTracker.java @@ -8,18 +8,19 @@ package org.dspace.statistics.export; import java.util.Date; -import javax.persistence.Column; -import javax.persistence.Entity; -import javax.persistence.GeneratedValue; -import javax.persistence.GenerationType; -import javax.persistence.Id; -import javax.persistence.SequenceGenerator; -import javax.persistence.Table; -import javax.persistence.Temporal; -import javax.persistence.TemporalType; +import jakarta.persistence.Column; +import jakarta.persistence.Entity; +import jakarta.persistence.GeneratedValue; +import jakarta.persistence.GenerationType; +import jakarta.persistence.Id; +import jakarta.persistence.SequenceGenerator; +import jakarta.persistence.Table; +import jakarta.persistence.Temporal; +import jakarta.persistence.TemporalType; +import org.dspace.core.HibernateProxyHelper; import org.dspace.core.ReloadableEntity; -import org.hibernate.proxy.HibernateProxyHelper; + /** * Class that represents an OpenURLTracker which tracks a failed transmission to IRUS diff --git a/dspace-api/src/main/java/org/dspace/statistics/export/processor/BitstreamEventProcessor.java b/dspace-api/src/main/java/org/dspace/statistics/export/processor/BitstreamEventProcessor.java index 85cb7bc14c14..41cf655dbcd5 100644 --- a/dspace-api/src/main/java/org/dspace/statistics/export/processor/BitstreamEventProcessor.java +++ b/dspace-api/src/main/java/org/dspace/statistics/export/processor/BitstreamEventProcessor.java @@ -11,8 +11,8 @@ import java.io.UnsupportedEncodingException; import java.net.URLEncoder; import java.sql.SQLException; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.content.Bitstream; import org.dspace.content.Bundle; import org.dspace.content.Item; diff --git a/dspace-api/src/main/java/org/dspace/statistics/export/processor/ExportEventProcessor.java b/dspace-api/src/main/java/org/dspace/statistics/export/processor/ExportEventProcessor.java index 609298779d34..434de459bad9 100644 --- a/dspace-api/src/main/java/org/dspace/statistics/export/processor/ExportEventProcessor.java +++ b/dspace-api/src/main/java/org/dspace/statistics/export/processor/ExportEventProcessor.java @@ -15,8 +15,8 @@ import java.util.Arrays; import java.util.Date; import java.util.List; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.apache.commons.codec.CharEncoding; import org.apache.commons.lang3.StringUtils; import org.dspace.content.DCDate; diff --git a/dspace-api/src/main/java/org/dspace/statistics/export/processor/ItemEventProcessor.java b/dspace-api/src/main/java/org/dspace/statistics/export/processor/ItemEventProcessor.java index 92adb67546ef..76ea30245dd7 100644 --- a/dspace-api/src/main/java/org/dspace/statistics/export/processor/ItemEventProcessor.java +++ b/dspace-api/src/main/java/org/dspace/statistics/export/processor/ItemEventProcessor.java @@ -11,14 +11,13 @@ import java.io.UnsupportedEncodingException; import java.net.URLEncoder; import java.sql.SQLException; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.content.Item; import org.dspace.core.Context; import org.dspace.services.ConfigurationService; import org.dspace.services.factory.DSpaceServicesFactory; - /** * Processor that handles Item events from the IrusExportUsageEventListener */ diff --git a/dspace-api/src/main/java/org/dspace/statistics/service/SolrLoggerService.java b/dspace-api/src/main/java/org/dspace/statistics/service/SolrLoggerService.java index 39fe344e2d4f..cbf8dc983a7e 100644 --- a/dspace-api/src/main/java/org/dspace/statistics/service/SolrLoggerService.java +++ b/dspace-api/src/main/java/org/dspace/statistics/service/SolrLoggerService.java @@ -13,8 +13,8 @@ import java.util.Date; import java.util.List; import java.util.Map; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.apache.solr.client.solrj.SolrServerException; import org.apache.solr.client.solrj.response.QueryResponse; import org.apache.solr.common.SolrInputDocument; @@ -109,15 +109,18 @@ public Map> queryField(String query, List oldFieldVals, String field) throws IOException; - public void markRobotsByIP(); - - public void markRobotByUserAgent(String agent); - - public void deleteRobotsByIsBotFlag(); - - public void deleteIP(String ip); + /** + * Scan the entire 'statistics' collection for documents that should be + * marked 'isBot:true' according to + * {@link org.dspace.statistics.util.SpiderDetector#isSpider(java.lang.String, + * java.lang.String, java.lang.String, java.lang.String)}. + */ + public void markRobots(); - public void deleteRobotsByIP(); + /** + * Delete all 'statistics' documents having 'isBot:true'. + */ + public void deleteRobots(); /* * update(String query, boolean addField, String fieldName, Object @@ -334,13 +337,6 @@ public QueryResponse query(String query, String filterQuery, String facetField, String sort, boolean ascending, int facetMinCount, boolean defaultFilterQueries, String pivotField, String fieldList) throws SolrServerException, IOException; - /** - * Returns in a filterQuery string all the ip addresses that should be ignored - * - * @return a string query with ip addresses - */ - public String getIgnoreSpiderIPs(); - public void shardSolrIndex() throws IOException, SolrServerException; public void reindexBitstreamHits(boolean removeDeletedBitstreams) throws Exception; diff --git a/dspace-api/src/main/java/org/dspace/statistics/util/IPTable.java b/dspace-api/src/main/java/org/dspace/statistics/util/IPTable.java index cb94dcc1a195..9d571cb7512b 100644 --- a/dspace-api/src/main/java/org/dspace/statistics/util/IPTable.java +++ b/dspace-api/src/main/java/org/dspace/statistics/util/IPTable.java @@ -174,6 +174,9 @@ public static String longToIp(long ip) { * @throws IPFormatException Exception Class to deal with IPFormat errors. */ public boolean contains(String ip) throws IPFormatException { + if (null == ip) { + throw new IPFormatException("Address may not be null"); + } try { long ipToTest = ipToLong(InetAddress.getByName(ip)); diff --git a/dspace-api/src/main/java/org/dspace/statistics/util/SpiderDetector.java b/dspace-api/src/main/java/org/dspace/statistics/util/SpiderDetector.java index 20d042d9d993..fa5f71e32631 100644 --- a/dspace-api/src/main/java/org/dspace/statistics/util/SpiderDetector.java +++ b/dspace-api/src/main/java/org/dspace/statistics/util/SpiderDetector.java @@ -10,12 +10,13 @@ import java.io.File; import java.io.IOException; import java.util.Set; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.statistics.factory.StatisticsServiceFactory; /** - * SpiderDetector delegates static methods to SpiderDetectorService, which is used to find IP's that are spiders... + * SpiderDetector delegates static methods to SpiderDetectorService, + * which is used to find IPs, hosts, or agents that are spiders... * * @author kevinvandevelde at atmire.com * @author ben at atmire.com @@ -23,8 +24,8 @@ * @author frederic at atmire.com */ public class SpiderDetector { - - //Service where all methods get delegated to, this is instantiated by a spring-bean defined in core-services.xml + //Service where all methods get delegated to. This is instantiated by a + // Spring bean defined in core-services.xml private static final SpiderDetectorService spiderDetectorService = StatisticsServiceFactory.getInstance().getSpiderDetectorService(); @@ -33,17 +34,6 @@ public class SpiderDetector { */ private SpiderDetector() { } - /** - * Get an immutable Set representing all the Spider Addresses here - * - * @return a set of IP addresses as strings - */ - public static Set getSpiderIpAddresses() { - - spiderDetectorService.loadSpiderIpAddresses(); - return spiderDetectorService.getTable().toSet(); - } - /** * Utility method which reads lines from a file & returns them in a Set. * diff --git a/dspace-api/src/main/java/org/dspace/statistics/util/SpiderDetectorService.java b/dspace-api/src/main/java/org/dspace/statistics/util/SpiderDetectorService.java index 710e8472d2a8..cf5a5d4319cb 100644 --- a/dspace-api/src/main/java/org/dspace/statistics/util/SpiderDetectorService.java +++ b/dspace-api/src/main/java/org/dspace/statistics/util/SpiderDetectorService.java @@ -10,26 +10,60 @@ import java.io.File; import java.io.IOException; import java.util.Set; -import javax.servlet.http.HttpServletRequest; + +import jakarta.servlet.http.HttpServletRequest; /** - * Interface to implement a SpiderDetectorService + * Interface to implement a SpiderDetectorService. * * @author frederic at atmire.com */ public interface SpiderDetectorService { + /** + * Service Method for testing spiders against existing spider files. + * + * @param clientIP address of the client. + * @param proxyIPs comma-list of X-Forwarded-For addresses, or null. + * @param hostname domain name of host, or null. + * @param agent User-Agent header value, or null. + * @return true if the client matches any spider characteristics list. + */ public boolean isSpider(String clientIP, String proxyIPs, String hostname, String agent); + /** + * Service Method for testing spiders against existing spider files. + * + * @param request the current HTTP request. + * @return true|false if the request was detected to be from a spider. + */ public boolean isSpider(HttpServletRequest request); + /** + * Check individual IP is a spider. + * + * @param ip the IP address to be checked. + * @return if is spider IP + */ public boolean isSpider(String ip); + /** + * Loader to populate the IP address table from files. + */ public void loadSpiderIpAddresses(); + /** + * Utility method which reads lines from a file & returns them in a Set. + * + * @param patternFile the location of our spider file + * @return a vector full of patterns + * @throws IOException could not happen since we check the file be4 we use it + */ public Set readPatterns(File patternFile) throws IOException; + /** + * @return the table of IP net blocks. + */ public IPTable getTable(); - } diff --git a/dspace-api/src/main/java/org/dspace/statistics/util/SpiderDetectorServiceImpl.java b/dspace-api/src/main/java/org/dspace/statistics/util/SpiderDetectorServiceImpl.java index 2f4a3a61e94a..f1b03b5439fa 100644 --- a/dspace-api/src/main/java/org/dspace/statistics/util/SpiderDetectorServiceImpl.java +++ b/dspace-api/src/main/java/org/dspace/statistics/util/SpiderDetectorServiceImpl.java @@ -17,8 +17,9 @@ import java.util.List; import java.util.Set; import java.util.regex.Pattern; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; +import jakarta.validation.constraints.NotNull; import org.apache.commons.configuration2.ex.ConversionException; import org.apache.commons.lang3.StringUtils; import org.apache.logging.log4j.LogManager; @@ -68,20 +69,12 @@ public IPTable getTable() { return table; } - /** - * Service Method for testing spiders against existing spider files. - *

+ /* * In future spiders HashSet may be optimized as byte offset array to * improve performance and memory footprint further. - * - * @param clientIP address of the client. - * @param proxyIPs comma-list of X-Forwarded-For addresses, or null. - * @param hostname domain name of host, or null. - * @param agent User-Agent header value, or null. - * @return true if the client matches any spider characteristics list. */ @Override - public boolean isSpider(String clientIP, String proxyIPs, String hostname, String agent) { + public boolean isSpider(@NotNull String clientIP, String proxyIPs, String hostname, String agent) { // See if any agent patterns match if (null != agent) { synchronized (agents) { @@ -139,13 +132,6 @@ public boolean isSpider(String clientIP, String proxyIPs, String hostname, Strin return false; } - /** - * Utility method which reads lines from a file & returns them in a Set. - * - * @param patternFile the location of our spider file - * @return a vector full of patterns - * @throws IOException could not happen since we check the file be4 we use it - */ @Override public Set readPatterns(File patternFile) throws IOException { @@ -213,12 +199,6 @@ private void loadPatterns(String directory, List patternList) { } } - /** - * Service Method for testing spiders against existing spider files. - * - * @param request - * @return true|false if the request was detected to be from a spider. - */ @Override public boolean isSpider(HttpServletRequest request) { return isSpider(request.getRemoteAddr(), @@ -227,12 +207,6 @@ public boolean isSpider(HttpServletRequest request) { request.getHeader("User-Agent")); } - /** - * Check individual IP is a spider. - * - * @param ip - * @return if is spider IP - */ @Override public boolean isSpider(String ip) { if (table == null) { @@ -243,16 +217,14 @@ public boolean isSpider(String ip) { if (table.contains(ip)) { return true; } - } catch (Exception e) { + } catch (IPTable.IPFormatException e) { + log.warn("Assumed not a spider: {}", e::getMessage); return false; } return false; } - /* - * loader to populate the table from files. - */ @Override public synchronized void loadSpiderIpAddresses() { @@ -295,7 +267,7 @@ public synchronized void loadSpiderIpAddresses() { } /** - * checks if case insensitive matching is enabled + * Checks if case insensitive matching is enabled. * * @return true if it's enabled, false if not */ @@ -312,5 +284,4 @@ private boolean isUseCaseInsensitiveMatching() { return useCaseInsensitiveMatching; } - } diff --git a/dspace-api/src/main/java/org/dspace/statistics/util/StatisticsClient.java b/dspace-api/src/main/java/org/dspace/statistics/util/StatisticsClient.java index 319fe437d648..95c4f1f81362 100644 --- a/dspace-api/src/main/java/org/dspace/statistics/util/StatisticsClient.java +++ b/dspace-api/src/main/java/org/dspace/statistics/util/StatisticsClient.java @@ -66,7 +66,6 @@ public static void main(String[] args) throws Exception { options.addOption("m", "mark-spiders", false, "Update isBot Flag in Solr"); options.addOption("f", "delete-spiders-by-flag", false, "Delete Spiders in Solr By isBot Flag"); - options.addOption("i", "delete-spiders-by-ip", false, "Delete Spiders in Solr By IP Address"); options.addOption("b", "reindex-bitstreams", false, "Reindex the bitstreams to ensure we have the bundle name"); options.addOption("e", "export", false, "Export SOLR view statistics data to usage-statistics-intermediate-format"); @@ -87,11 +86,9 @@ public static void main(String[] args) throws Exception { if (line.hasOption("u")) { StatisticsClient.updateSpiderFiles(); } else if (line.hasOption('m')) { - solrLoggerService.markRobotsByIP(); + solrLoggerService.markRobots(); } else if (line.hasOption('f')) { - solrLoggerService.deleteRobotsByIsBotFlag(); - } else if (line.hasOption('i')) { - solrLoggerService.deleteRobotsByIP(); + solrLoggerService.deleteRobots(); } else if (line.hasOption('b')) { solrLoggerService.reindexBitstreamHits(line.hasOption('r')); } else if (line.hasOption('e')) { @@ -104,7 +101,7 @@ public static void main(String[] args) throws Exception { } /** - * Method to update Spiders in config directory. + * Method to update Spiders in configuration directory. */ private static void updateSpiderFiles() { try { diff --git a/dspace-api/src/main/java/org/dspace/storage/bitstore/BitstreamStorageServiceImpl.java b/dspace-api/src/main/java/org/dspace/storage/bitstore/BitstreamStorageServiceImpl.java index fcebbe676b80..7b9bae9bbbbc 100644 --- a/dspace-api/src/main/java/org/dspace/storage/bitstore/BitstreamStorageServiceImpl.java +++ b/dspace-api/src/main/java/org/dspace/storage/bitstore/BitstreamStorageServiceImpl.java @@ -15,8 +15,8 @@ import java.util.List; import java.util.Map; import java.util.UUID; -import javax.annotation.Nullable; +import jakarta.annotation.Nullable; import org.apache.commons.collections.CollectionUtils; import org.apache.commons.collections4.MapUtils; import org.apache.logging.log4j.LogManager; diff --git a/dspace-api/src/main/java/org/dspace/storage/bitstore/S3BitStoreService.java b/dspace-api/src/main/java/org/dspace/storage/bitstore/S3BitStoreService.java index 02203db4e8ba..44329daa4ca4 100644 --- a/dspace-api/src/main/java/org/dspace/storage/bitstore/S3BitStoreService.java +++ b/dspace-api/src/main/java/org/dspace/storage/bitstore/S3BitStoreService.java @@ -10,6 +10,7 @@ import static java.lang.String.valueOf; import java.io.File; +import java.io.FileNotFoundException; import java.io.FileOutputStream; import java.io.IOException; import java.io.InputStream; @@ -22,7 +23,6 @@ import java.util.Optional; import java.util.UUID; import java.util.function.Supplier; -import javax.validation.constraints.NotNull; import com.amazonaws.AmazonClientException; import com.amazonaws.ClientConfiguration; @@ -47,6 +47,7 @@ import com.amazonaws.services.s3.transfer.Upload; import com.google.gson.Gson; import com.google.gson.GsonBuilder; +import jakarta.validation.constraints.NotNull; import org.apache.commons.cli.CommandLine; import org.apache.commons.cli.DefaultParser; import org.apache.commons.cli.HelpFormatter; @@ -119,6 +120,11 @@ public class S3BitStoreService extends BaseBitStoreService { private Integer connectionTimeout; private String endpoint; + /** + * The maximum size of individual chunk to download from S3 when a file is accessed. Default 5Mb + */ + private long bufferSize = 5 * 1024 * 1024; + /** * container for all the assets */ @@ -406,20 +412,7 @@ public InputStream get(Bitstream bitstream) throws IOException { if (isRegisteredBitstream(key)) { key = key.substring(REGISTERED_FLAG.length()); } - try { - File tempFile = File.createTempFile("s3-disk-copy-" + UUID.randomUUID(), "temp"); - tempFile.deleteOnExit(); - - GetObjectRequest getObjectRequest = new GetObjectRequest(bucketName, key); - - Download download = tm.download(getObjectRequest, tempFile); - download.waitForCompletion(); - - return new DeleteOnCloseFileInputStream(tempFile); - } catch (AmazonClientException | InterruptedException e) { - log.error("get(" + key + ")", e); - throw new IOException(e); - } + return new S3LazyInputStream(key, bufferSize, bitstream.getSizeBytes()); } /** @@ -804,4 +797,84 @@ public String path(Bitstream bitstream) throws IOException { return tempFile.getAbsolutePath(); } + public void setBufferSize(long bufferSize) { + this.bufferSize = bufferSize; + } + + /** + * This inner class represent an InputStream that uses temporary files to + * represent chunk of the object downloaded from S3. When the input stream is + * read the class look first to the current chunk and download a new one once if + * the current one as been fully read. The class is responsible to close a chunk + * as soon as a new one is retrieved, the last chunk is closed when the input + * stream itself is closed or the last byte is read (the first of the two) + */ + public class S3LazyInputStream extends InputStream { + private InputStream currentChunkStream; + private String objectKey; + private long endOfChunk = -1; + private long chunkMaxSize; + private long currPos = 0; + private long fileSize; + + public S3LazyInputStream(String objectKey, long chunkMaxSize, long fileSize) throws IOException { + this.objectKey = objectKey; + this.chunkMaxSize = chunkMaxSize; + this.endOfChunk = 0; + this.fileSize = fileSize; + downloadChunk(); + } + + @Override + public int read() throws IOException { + // is the current chunk completely read and other are available? + if (currPos == endOfChunk && currPos < fileSize) { + currentChunkStream.close(); + downloadChunk(); + } + + int byteRead = currPos < endOfChunk ? currentChunkStream.read() : -1; + // do we get any data or are we at the end of the file? + if (byteRead != -1) { + currPos++; + } else { + currentChunkStream.close(); + } + return byteRead; + } + + /** + * This method download the next chunk from S3 + * + * @throws IOException + * @throws FileNotFoundException + */ + private void downloadChunk() throws IOException, FileNotFoundException { + // Create a DownloadFileRequest with the desired byte range + long startByte = currPos; // Start byte (inclusive) + long endByte = Long.min(startByte + chunkMaxSize - 1, fileSize - 1); // End byte (inclusive) + GetObjectRequest getRequest = new GetObjectRequest(bucketName, objectKey) + .withRange(startByte, endByte); + + File currentChunkFile = File.createTempFile("s3-disk-copy-" + UUID.randomUUID(), "temp"); + currentChunkFile.deleteOnExit(); + try { + Download download = tm.download(getRequest, currentChunkFile); + download.waitForCompletion(); + currentChunkStream = new DeleteOnCloseFileInputStream(currentChunkFile); + endOfChunk = endOfChunk + download.getProgress().getBytesTransferred(); + } catch (AmazonClientException | InterruptedException e) { + currentChunkFile.delete(); + throw new IOException(e); + } + } + + @Override + public void close() throws IOException { + if (currentChunkStream != null) { + currentChunkStream.close(); + } + } + + } } diff --git a/dspace-api/src/main/java/org/dspace/storage/bitstore/service/BitstreamStorageService.java b/dspace-api/src/main/java/org/dspace/storage/bitstore/service/BitstreamStorageService.java index fd41b2486966..22631597c8e5 100644 --- a/dspace-api/src/main/java/org/dspace/storage/bitstore/service/BitstreamStorageService.java +++ b/dspace-api/src/main/java/org/dspace/storage/bitstore/service/BitstreamStorageService.java @@ -12,8 +12,8 @@ import java.sql.SQLException; import java.util.Map; import java.util.UUID; -import javax.annotation.Nullable; +import jakarta.annotation.Nullable; import org.dspace.authorize.AuthorizeException; import org.dspace.content.Bitstream; import org.dspace.core.Context; diff --git a/dspace-api/src/main/java/org/dspace/storage/rdbms/DatabaseUtils.java b/dspace-api/src/main/java/org/dspace/storage/rdbms/DatabaseUtils.java index fd33b111a1b9..5a1ee85e8e4a 100644 --- a/dspace-api/src/main/java/org/dspace/storage/rdbms/DatabaseUtils.java +++ b/dspace-api/src/main/java/org/dspace/storage/rdbms/DatabaseUtils.java @@ -581,7 +581,7 @@ private synchronized static FluentConfiguration setupFlyway(DataSource datasourc // For DSpace, we sometimes have to insert "old" migrations in after a major release // if further development/bug fixes are needed in older versions. So, "Ignored" migrations are // nothing to worry about...you can always trigger them to run using "database migrate ignored" from CLI - flywayConfiguration.ignoreIgnoredMigrations(true); + flywayConfiguration.ignoreMigrationPatterns("*:ignored"); // Set Flyway callbacks (i.e. classes which are called post-DB migration and similar) List flywayCallbacks = DSpaceServicesFactory.getInstance().getServiceManager() diff --git a/dspace-api/src/main/java/org/dspace/submit/consumer/SubmissionConfigConsumer.java b/dspace-api/src/main/java/org/dspace/submit/consumer/SubmissionConfigConsumer.java index a593fe8ae066..0cf4ae92c2ca 100644 --- a/dspace-api/src/main/java/org/dspace/submit/consumer/SubmissionConfigConsumer.java +++ b/dspace-api/src/main/java/org/dspace/submit/consumer/SubmissionConfigConsumer.java @@ -8,15 +8,10 @@ package org.dspace.submit.consumer; import org.apache.logging.log4j.Logger; -import org.dspace.content.Collection; -import org.dspace.content.DSpaceObject; import org.dspace.core.Constants; import org.dspace.core.Context; -import org.dspace.discovery.IndexingService; -import org.dspace.discovery.indexobject.IndexableCollection; import org.dspace.event.Consumer; import org.dspace.event.Event; -import org.dspace.services.factory.DSpaceServicesFactory; import org.dspace.submit.factory.SubmissionServiceFactory; /** @@ -28,11 +23,9 @@ public class SubmissionConfigConsumer implements Consumer { /** * log4j logger */ - private static Logger log = org.apache.logging.log4j.LogManager.getLogger(SubmissionConfigConsumer.class); + private static final Logger log = org.apache.logging.log4j.LogManager.getLogger(SubmissionConfigConsumer.class); - IndexingService indexer = DSpaceServicesFactory.getInstance().getServiceManager() - .getServiceByName(IndexingService.class.getName(), - IndexingService.class); + private boolean reloadNeeded = false; @Override public void initialize() throws Exception { @@ -42,37 +35,27 @@ public void initialize() throws Exception { @Override public void consume(Context ctx, Event event) throws Exception { int st = event.getSubjectType(); - int et = event.getEventType(); + if (st == Constants.COLLECTION) { + // NOTE: IndexEventConsumer ("discovery") should be declared before this consumer + // We don't reindex the collection because it will normally be reindexed by IndexEventConsumer + // before the submission configurations are reloaded - if ( st == Constants.COLLECTION ) { - switch (et) { - case Event.MODIFY_METADATA: - // Submission configuration it's based on solr - // for collection's entity type but, at this point - // that info isn't indexed yet, we need to force it - DSpaceObject subject = event.getSubject(ctx); - Collection collectionFromDSOSubject = (Collection) subject; - indexer.indexContent(ctx, new IndexableCollection (collectionFromDSOSubject), true, false, false); - indexer.commit(); - - log.debug("SubmissionConfigConsumer occured: " + event.toString()); - // reload submission configurations - SubmissionServiceFactory.getInstance().getSubmissionConfigService().reload(); - break; - - default: - log.debug("SubmissionConfigConsumer occured: " + event.toString()); - // reload submission configurations - SubmissionServiceFactory.getInstance().getSubmissionConfigService().reload(); - break; - } + log.debug("SubmissionConfigConsumer occurred: " + event); + // submission configurations should be reloaded + reloadNeeded = true; } } @Override public void end(Context ctx) throws Exception { - // No-op + if (reloadNeeded) { + // reload submission configurations + SubmissionServiceFactory.getInstance().getSubmissionConfigService().reload(); + + // Reset the boolean used + reloadNeeded = false; + } } @Override diff --git a/dspace-api/src/main/java/org/dspace/submit/model/UploadConfiguration.java b/dspace-api/src/main/java/org/dspace/submit/model/UploadConfiguration.java index 275b55c913c1..51ae8f716ef7 100644 --- a/dspace-api/src/main/java/org/dspace/submit/model/UploadConfiguration.java +++ b/dspace-api/src/main/java/org/dspace/submit/model/UploadConfiguration.java @@ -8,8 +8,8 @@ package org.dspace.submit.model; import java.util.List; -import javax.inject.Inject; +import jakarta.inject.Inject; import org.dspace.services.ConfigurationService; /** diff --git a/dspace-api/src/main/java/org/dspace/subscriptions/ContentGenerator.java b/dspace-api/src/main/java/org/dspace/subscriptions/ContentGenerator.java index 0891224404e3..e6cb82991575 100644 --- a/dspace-api/src/main/java/org/dspace/subscriptions/ContentGenerator.java +++ b/dspace-api/src/main/java/org/dspace/subscriptions/ContentGenerator.java @@ -95,6 +95,7 @@ private String generateBodyMail(String type, List subscription // .orElseGet(() -> entityType2Disseminator.get("Item")) // .disseminate(context, item, out); } + out.close(); return out.toString(); } catch (Exception e) { log.error(e.getMessage(), e); diff --git a/dspace-api/src/main/java/org/dspace/supervision/SupervisionOrder.java b/dspace-api/src/main/java/org/dspace/supervision/SupervisionOrder.java index 52d5dacb74bb..6b447361efb0 100644 --- a/dspace-api/src/main/java/org/dspace/supervision/SupervisionOrder.java +++ b/dspace-api/src/main/java/org/dspace/supervision/SupervisionOrder.java @@ -7,17 +7,16 @@ */ package org.dspace.supervision; -import javax.persistence.Column; -import javax.persistence.Entity; -import javax.persistence.FetchType; -import javax.persistence.GeneratedValue; -import javax.persistence.GenerationType; -import javax.persistence.Id; -import javax.persistence.JoinColumn; -import javax.persistence.ManyToOne; -import javax.persistence.SequenceGenerator; -import javax.persistence.Table; - +import jakarta.persistence.Column; +import jakarta.persistence.Entity; +import jakarta.persistence.FetchType; +import jakarta.persistence.GeneratedValue; +import jakarta.persistence.GenerationType; +import jakarta.persistence.Id; +import jakarta.persistence.JoinColumn; +import jakarta.persistence.ManyToOne; +import jakarta.persistence.SequenceGenerator; +import jakarta.persistence.Table; import org.dspace.content.Item; import org.dspace.core.Context; import org.dspace.core.ReloadableEntity; diff --git a/dspace-api/src/main/java/org/dspace/supervision/dao/impl/SupervisionOrderDaoImpl.java b/dspace-api/src/main/java/org/dspace/supervision/dao/impl/SupervisionOrderDaoImpl.java index 09cd0841e78f..ac056d553054 100644 --- a/dspace-api/src/main/java/org/dspace/supervision/dao/impl/SupervisionOrderDaoImpl.java +++ b/dspace-api/src/main/java/org/dspace/supervision/dao/impl/SupervisionOrderDaoImpl.java @@ -9,10 +9,10 @@ import java.sql.SQLException; import java.util.List; -import javax.persistence.criteria.CriteriaBuilder; -import javax.persistence.criteria.CriteriaQuery; -import javax.persistence.criteria.Root; +import jakarta.persistence.criteria.CriteriaBuilder; +import jakarta.persistence.criteria.CriteriaQuery; +import jakarta.persistence.criteria.Root; import org.dspace.content.Item; import org.dspace.core.AbstractHibernateDAO; import org.dspace.core.Context; diff --git a/dspace-api/src/main/java/org/dspace/usage/UsageEvent.java b/dspace-api/src/main/java/org/dspace/usage/UsageEvent.java index 32380c8cbf17..c541d93edb83 100644 --- a/dspace-api/src/main/java/org/dspace/usage/UsageEvent.java +++ b/dspace-api/src/main/java/org/dspace/usage/UsageEvent.java @@ -9,8 +9,8 @@ import java.sql.SQLException; import java.util.UUID; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.content.DSpaceObject; import org.dspace.content.service.DSpaceObjectService; import org.dspace.core.Constants; diff --git a/dspace-api/src/main/java/org/dspace/usage/UsageSearchEvent.java b/dspace-api/src/main/java/org/dspace/usage/UsageSearchEvent.java index 938f9e798452..f285a4f90aec 100644 --- a/dspace-api/src/main/java/org/dspace/usage/UsageSearchEvent.java +++ b/dspace-api/src/main/java/org/dspace/usage/UsageSearchEvent.java @@ -8,8 +8,8 @@ package org.dspace.usage; import java.util.List; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.content.DSpaceObject; import org.dspace.core.Context; diff --git a/dspace-api/src/main/java/org/dspace/util/DSpacePostgreSQLDialect.java b/dspace-api/src/main/java/org/dspace/util/DSpacePostgreSQLDialect.java index 0da4f14b7719..8b982d454440 100644 --- a/dspace-api/src/main/java/org/dspace/util/DSpacePostgreSQLDialect.java +++ b/dspace-api/src/main/java/org/dspace/util/DSpacePostgreSQLDialect.java @@ -7,8 +7,9 @@ */ package org.dspace.util; -import org.hibernate.dialect.PostgreSQL94Dialect; -import org.hibernate.dialect.function.SQLFunctionTemplate; +import org.hibernate.boot.model.FunctionContributions; +import org.hibernate.dialect.PostgreSQLDialect; +import org.hibernate.type.BasicTypeRegistry; import org.hibernate.type.StandardBasicTypes; /** @@ -16,18 +17,34 @@ * @see org.dspace.contentreport.QueryOperator * @author Jean-François Morin (Université Laval) */ -public class DSpacePostgreSQLDialect extends PostgreSQL94Dialect { +public class DSpacePostgreSQLDialect extends PostgreSQLDialect { public static final String REGEX_MATCHES = "matches"; public static final String REGEX_IMATCHES = "imatches"; public static final String REGEX_NOT_MATCHES = "not_matches"; public static final String REGEX_NOT_IMATCHES = "not_imatches"; - public DSpacePostgreSQLDialect() { - registerFunction(REGEX_MATCHES, new SQLFunctionTemplate(StandardBasicTypes.BOOLEAN, "?1 ~ ?2")); - registerFunction(REGEX_IMATCHES, new SQLFunctionTemplate(StandardBasicTypes.BOOLEAN, "?1 ~* ?2")); - registerFunction(REGEX_NOT_MATCHES, new SQLFunctionTemplate(StandardBasicTypes.BOOLEAN, "?1 !~ ?2")); - registerFunction(REGEX_NOT_IMATCHES, new SQLFunctionTemplate(StandardBasicTypes.BOOLEAN, "?1 !~* ?2")); - } + @Override + public void initializeFunctionRegistry(FunctionContributions functionContributions) { + super.initializeFunctionRegistry(functionContributions); + + BasicTypeRegistry basicTypeRegistry = functionContributions.getTypeConfiguration().getBasicTypeRegistry(); + functionContributions.getFunctionRegistry().registerPattern( + REGEX_MATCHES, + "?1 ~ ?2", + basicTypeRegistry.resolve( StandardBasicTypes.BOOLEAN )); + functionContributions.getFunctionRegistry().registerPattern( + REGEX_IMATCHES, + "?1 ~* ?2", + basicTypeRegistry.resolve( StandardBasicTypes.BOOLEAN )); + functionContributions.getFunctionRegistry().registerPattern( + REGEX_NOT_MATCHES, + "?1 !~ ?2", + basicTypeRegistry.resolve( StandardBasicTypes.BOOLEAN )); + functionContributions.getFunctionRegistry().registerPattern( + REGEX_NOT_IMATCHES, + "?1 !~* ?2", + basicTypeRegistry.resolve( StandardBasicTypes.BOOLEAN )); + } } diff --git a/dspace-api/src/main/java/org/dspace/util/JpaCriteriaBuilderKit.java b/dspace-api/src/main/java/org/dspace/util/JpaCriteriaBuilderKit.java index 9bb3a0e442f9..7f74f0a728cf 100644 --- a/dspace-api/src/main/java/org/dspace/util/JpaCriteriaBuilderKit.java +++ b/dspace-api/src/main/java/org/dspace/util/JpaCriteriaBuilderKit.java @@ -7,9 +7,9 @@ */ package org.dspace.util; -import javax.persistence.criteria.AbstractQuery; -import javax.persistence.criteria.CriteriaBuilder; -import javax.persistence.criteria.Root; +import jakarta.persistence.criteria.AbstractQuery; +import jakarta.persistence.criteria.CriteriaBuilder; +import jakarta.persistence.criteria.Root; /** * Data structure containing the required objects to build criteria diff --git a/dspace-api/src/main/java/org/dspace/util/MultiFormatDateParser.java b/dspace-api/src/main/java/org/dspace/util/MultiFormatDateParser.java index 126daa035332..06b02910c99a 100644 --- a/dspace-api/src/main/java/org/dspace/util/MultiFormatDateParser.java +++ b/dspace-api/src/main/java/org/dspace/util/MultiFormatDateParser.java @@ -21,8 +21,8 @@ import java.util.TimeZone; import java.util.regex.Pattern; import java.util.regex.PatternSyntaxException; -import javax.inject.Inject; +import jakarta.inject.Inject; import org.apache.logging.log4j.LogManager; import org.apache.logging.log4j.Logger; import org.dspace.servicemanager.DSpaceKernelInit; diff --git a/dspace-api/src/main/java/org/dspace/versioning/DefaultItemVersionProvider.java b/dspace-api/src/main/java/org/dspace/versioning/DefaultItemVersionProvider.java index 0cd8cb5fc64c..fa89b3441408 100644 --- a/dspace-api/src/main/java/org/dspace/versioning/DefaultItemVersionProvider.java +++ b/dspace-api/src/main/java/org/dspace/versioning/DefaultItemVersionProvider.java @@ -52,7 +52,9 @@ public class DefaultItemVersionProvider extends AbstractVersionProvider implemen @Override public Item createNewItemAndAddItInWorkspace(Context context, Item nativeItem) { try { - WorkspaceItem workspaceItem = workspaceItemService.create(context, nativeItem.getOwningCollection(), true); + WorkspaceItem workspaceItem = workspaceItemService.create(context, nativeItem.getOwningCollection(), + false, + true); Item itemNew = workspaceItem.getItem(); itemService.update(context, itemNew); return itemNew; diff --git a/dspace-api/src/main/java/org/dspace/versioning/Version.java b/dspace-api/src/main/java/org/dspace/versioning/Version.java index ee5c1c418338..ada857c1cf17 100644 --- a/dspace-api/src/main/java/org/dspace/versioning/Version.java +++ b/dspace-api/src/main/java/org/dspace/versioning/Version.java @@ -8,24 +8,25 @@ package org.dspace.versioning; import java.util.Date; -import javax.persistence.Column; -import javax.persistence.Entity; -import javax.persistence.FetchType; -import javax.persistence.GeneratedValue; -import javax.persistence.GenerationType; -import javax.persistence.Id; -import javax.persistence.JoinColumn; -import javax.persistence.ManyToOne; -import javax.persistence.SequenceGenerator; -import javax.persistence.Table; -import javax.persistence.Temporal; -import javax.persistence.TemporalType; +import jakarta.persistence.Column; +import jakarta.persistence.Entity; +import jakarta.persistence.FetchType; +import jakarta.persistence.GeneratedValue; +import jakarta.persistence.GenerationType; +import jakarta.persistence.Id; +import jakarta.persistence.JoinColumn; +import jakarta.persistence.ManyToOne; +import jakarta.persistence.SequenceGenerator; +import jakarta.persistence.Table; +import jakarta.persistence.Temporal; +import jakarta.persistence.TemporalType; import org.dspace.content.Item; import org.dspace.core.Context; +import org.dspace.core.HibernateProxyHelper; import org.dspace.core.ReloadableEntity; import org.dspace.eperson.EPerson; -import org.hibernate.proxy.HibernateProxyHelper; + /** * @author Fabio Bolognesi (fabio at atmire dot com) diff --git a/dspace-api/src/main/java/org/dspace/versioning/VersionHistory.java b/dspace-api/src/main/java/org/dspace/versioning/VersionHistory.java index 231ccc29d973..f207fe8d4f03 100644 --- a/dspace-api/src/main/java/org/dspace/versioning/VersionHistory.java +++ b/dspace-api/src/main/java/org/dspace/versioning/VersionHistory.java @@ -10,21 +10,22 @@ import java.util.ArrayList; import java.util.List; import java.util.Objects; -import javax.persistence.Column; -import javax.persistence.Entity; -import javax.persistence.FetchType; -import javax.persistence.GeneratedValue; -import javax.persistence.GenerationType; -import javax.persistence.Id; -import javax.persistence.OneToMany; -import javax.persistence.OrderBy; -import javax.persistence.SequenceGenerator; -import javax.persistence.Table; +import jakarta.persistence.Column; +import jakarta.persistence.Entity; +import jakarta.persistence.FetchType; +import jakarta.persistence.GeneratedValue; +import jakarta.persistence.GenerationType; +import jakarta.persistence.Id; +import jakarta.persistence.OneToMany; +import jakarta.persistence.OrderBy; +import jakarta.persistence.SequenceGenerator; +import jakarta.persistence.Table; import org.apache.commons.collections4.CollectionUtils; import org.dspace.core.Context; +import org.dspace.core.HibernateProxyHelper; import org.dspace.core.ReloadableEntity; -import org.hibernate.proxy.HibernateProxyHelper; + /** diff --git a/dspace-api/src/main/java/org/dspace/versioning/dao/impl/VersionDAOImpl.java b/dspace-api/src/main/java/org/dspace/versioning/dao/impl/VersionDAOImpl.java index 4dba2c5dff54..b7fa9cb48dbe 100644 --- a/dspace-api/src/main/java/org/dspace/versioning/dao/impl/VersionDAOImpl.java +++ b/dspace-api/src/main/java/org/dspace/versioning/dao/impl/VersionDAOImpl.java @@ -11,11 +11,11 @@ import java.util.LinkedList; import java.util.List; import java.util.UUID; -import javax.persistence.Query; -import javax.persistence.criteria.CriteriaBuilder; -import javax.persistence.criteria.CriteriaQuery; -import javax.persistence.criteria.Root; +import jakarta.persistence.Query; +import jakarta.persistence.criteria.CriteriaBuilder; +import jakarta.persistence.criteria.CriteriaQuery; +import jakarta.persistence.criteria.Root; import org.dspace.content.Item; import org.dspace.core.AbstractHibernateDAO; import org.dspace.core.Context; @@ -75,7 +75,7 @@ public List findVersionsWithItems(Context context, VersionHistory versi ) ); - List orderList = new LinkedList<>(); + List orderList = new LinkedList<>(); orderList.add(criteriaBuilder.desc(versionRoot.get(Version_.versionNumber))); criteriaQuery.orderBy(orderList); @@ -85,9 +85,9 @@ public List findVersionsWithItems(Context context, VersionHistory versi @Override public int countVersionsByHistoryWithItem(Context context, VersionHistory versionHistory) throws SQLException { Query query = createQuery(context, "SELECT count(*) FROM " + Version.class.getSimpleName() - + " WHERE versionhistory_id = (:versionhistoryId)" - + " AND item_id IS NOT NULL"); - query.setParameter("versionhistoryId", versionHistory); + + " WHERE versionHistory = :versionhistory" + + " AND item IS NOT NULL"); + query.setParameter("versionhistory", versionHistory); return count(query); } diff --git a/dspace-api/src/main/java/org/dspace/versioning/dao/impl/VersionHistoryDAOImpl.java b/dspace-api/src/main/java/org/dspace/versioning/dao/impl/VersionHistoryDAOImpl.java index eac78c3e6215..b71ef59f2f94 100644 --- a/dspace-api/src/main/java/org/dspace/versioning/dao/impl/VersionHistoryDAOImpl.java +++ b/dspace-api/src/main/java/org/dspace/versioning/dao/impl/VersionHistoryDAOImpl.java @@ -10,11 +10,11 @@ import java.sql.SQLException; import java.util.LinkedList; import java.util.List; -import javax.persistence.criteria.CriteriaBuilder; -import javax.persistence.criteria.CriteriaQuery; -import javax.persistence.criteria.Join; -import javax.persistence.criteria.Root; +import jakarta.persistence.criteria.CriteriaBuilder; +import jakarta.persistence.criteria.CriteriaQuery; +import jakarta.persistence.criteria.Join; +import jakarta.persistence.criteria.Root; import org.dspace.content.Item; import org.dspace.core.AbstractHibernateDAO; import org.dspace.core.Context; @@ -47,7 +47,7 @@ public VersionHistory findByItem(Context context, Item item) throws SQLException criteriaQuery.select(versionHistoryRoot); criteriaQuery.where(criteriaBuilder.equal(join.get(Version_.item), item)); - List orderList = new LinkedList<>(); + List orderList = new LinkedList<>(); orderList.add(criteriaBuilder.desc(join.get(Version_.versionNumber))); criteriaQuery.orderBy(orderList); diff --git a/dspace-api/src/main/java/org/dspace/web/ContextUtil.java b/dspace-api/src/main/java/org/dspace/web/ContextUtil.java index 4bdf26c05381..a17d05002b62 100644 --- a/dspace-api/src/main/java/org/dspace/web/ContextUtil.java +++ b/dspace-api/src/main/java/org/dspace/web/ContextUtil.java @@ -10,10 +10,10 @@ import java.sql.SQLException; import java.util.Enumeration; import java.util.Locale; -import javax.servlet.ServletException; -import javax.servlet.ServletRequest; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.ServletException; +import jakarta.servlet.ServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.apache.commons.lang3.StringUtils; import org.apache.logging.log4j.Logger; import org.dspace.core.Context; diff --git a/dspace-api/src/main/java/org/dspace/workflow/CurationTaskConfig.java b/dspace-api/src/main/java/org/dspace/workflow/CurationTaskConfig.java index be870ee33e76..675fbb03be2d 100644 --- a/dspace-api/src/main/java/org/dspace/workflow/CurationTaskConfig.java +++ b/dspace-api/src/main/java/org/dspace/workflow/CurationTaskConfig.java @@ -18,14 +18,14 @@ import java.util.HashMap; import java.util.List; import java.util.Map; -import javax.validation.constraints.NotNull; import javax.xml.XMLConstants; -import javax.xml.bind.JAXBContext; -import javax.xml.bind.JAXBException; -import javax.xml.bind.Unmarshaller; import javax.xml.validation.Schema; import javax.xml.validation.SchemaFactory; +import jakarta.validation.constraints.NotNull; +import jakarta.xml.bind.JAXBContext; +import jakarta.xml.bind.JAXBException; +import jakarta.xml.bind.Unmarshaller; import org.xml.sax.SAXException; /** diff --git a/dspace-api/src/main/java/org/dspace/workflow/FlowStep.java b/dspace-api/src/main/java/org/dspace/workflow/FlowStep.java index b133c51cfb52..8709481834ba 100644 --- a/dspace-api/src/main/java/org/dspace/workflow/FlowStep.java +++ b/dspace-api/src/main/java/org/dspace/workflow/FlowStep.java @@ -9,7 +9,8 @@ import java.util.ArrayList; import java.util.List; -import javax.validation.constraints.NotNull; + +import jakarta.validation.constraints.NotNull; /** * Linkage between a workflow step and some {@link org.dspace.curate.CurationTask}s. diff --git a/dspace-api/src/main/java/org/dspace/workflow/Task.java b/dspace-api/src/main/java/org/dspace/workflow/Task.java index 112e7c558500..94e92a67135d 100644 --- a/dspace-api/src/main/java/org/dspace/workflow/Task.java +++ b/dspace-api/src/main/java/org/dspace/workflow/Task.java @@ -11,7 +11,8 @@ import java.util.HashMap; import java.util.List; import java.util.Map; -import javax.validation.constraints.NotNull; + +import jakarta.validation.constraints.NotNull; /** * An association between a {@link org.dspace.curate.CurationTask curation task} diff --git a/dspace-api/src/main/java/org/dspace/workflow/TaskSet.java b/dspace-api/src/main/java/org/dspace/workflow/TaskSet.java index 951940d5bb77..a077bfddbeae 100644 --- a/dspace-api/src/main/java/org/dspace/workflow/TaskSet.java +++ b/dspace-api/src/main/java/org/dspace/workflow/TaskSet.java @@ -8,7 +8,8 @@ package org.dspace.workflow; import java.util.List; -import javax.validation.constraints.NotNull; + +import jakarta.validation.constraints.NotNull; /** * A collection of {@link org.dspace.curate.CurationTask curation tasks} to be diff --git a/dspace-api/src/main/java/org/dspace/xmlworkflow/WorkflowUtils.java b/dspace-api/src/main/java/org/dspace/xmlworkflow/WorkflowUtils.java index a81bebcd5a35..b4e9f3d7f130 100644 --- a/dspace-api/src/main/java/org/dspace/xmlworkflow/WorkflowUtils.java +++ b/dspace-api/src/main/java/org/dspace/xmlworkflow/WorkflowUtils.java @@ -15,9 +15,9 @@ import java.util.Enumeration; import java.util.LinkedHashMap; import java.util.Map; -import javax.mail.MessagingException; -import javax.servlet.http.HttpServletRequest; +import jakarta.mail.MessagingException; +import jakarta.servlet.http.HttpServletRequest; import org.apache.commons.lang3.StringUtils; import org.apache.logging.log4j.LogManager; import org.apache.logging.log4j.Logger; diff --git a/dspace-api/src/main/java/org/dspace/xmlworkflow/XmlWorkflowServiceImpl.java b/dspace-api/src/main/java/org/dspace/xmlworkflow/XmlWorkflowServiceImpl.java index 802c4b3c0da2..07f1c8335d36 100644 --- a/dspace-api/src/main/java/org/dspace/xmlworkflow/XmlWorkflowServiceImpl.java +++ b/dspace-api/src/main/java/org/dspace/xmlworkflow/XmlWorkflowServiceImpl.java @@ -18,9 +18,9 @@ import java.util.Map; import java.util.MissingResourceException; import java.util.UUID; -import javax.mail.MessagingException; -import javax.servlet.http.HttpServletRequest; +import jakarta.mail.MessagingException; +import jakarta.servlet.http.HttpServletRequest; import org.apache.commons.collections4.CollectionUtils; import org.apache.commons.lang.StringUtils; import org.apache.logging.log4j.Logger; @@ -1236,7 +1236,7 @@ protected WorkspaceItem returnToWorkspace(Context c, XmlWorkflowItem wfi) public String getEPersonName(EPerson ePerson) { String submitter = ePerson.getFullName(); - submitter = submitter + "(" + ePerson.getEmail() + ")"; + submitter = submitter + " (" + ePerson.getEmail() + ")"; return submitter; } @@ -1250,14 +1250,20 @@ protected void recordStart(Context context, Item myitem, Action action) // Create provenance description StringBuffer provmessage = new StringBuffer(); - if (myitem.getSubmitter() != null) { + //behavior to generate provenance message, if set true, personal data (e.g. email) of submitter will be hidden + //default value false, personal data of submitter will be shown in provenance message + String isProvenancePrivacyActiveProperty = + configurationService.getProperty("metadata.privacy.dc.description.provenance", "false"); + boolean isProvenancePrivacyActive = Boolean.parseBoolean(isProvenancePrivacyActiveProperty); + + if (myitem.getSubmitter() != null && !isProvenancePrivacyActive) { provmessage.append("Submitted by ").append(myitem.getSubmitter().getFullName()) - .append(" (").append(myitem.getSubmitter().getEmail()).append(") on ") - .append(now.toString()); + .append(" (").append(myitem.getSubmitter().getEmail()).append(") on ") + .append(now.toString()); } else { // else, null submitter - provmessage.append("Submitted by unknown (probably automated) on") - .append(now.toString()); + provmessage.append("Submitted by unknown (probably automated or submitter hidden) on ") + .append(now.toString()); } if (action != null) { provmessage.append(" workflow start=").append(action.getProvenanceStartId()).append("\n"); diff --git a/dspace-api/src/main/java/org/dspace/xmlworkflow/service/XmlWorkflowService.java b/dspace-api/src/main/java/org/dspace/xmlworkflow/service/XmlWorkflowService.java index 71e0d48b8130..4008dc402adb 100644 --- a/dspace-api/src/main/java/org/dspace/xmlworkflow/service/XmlWorkflowService.java +++ b/dspace-api/src/main/java/org/dspace/xmlworkflow/service/XmlWorkflowService.java @@ -10,9 +10,9 @@ import java.io.IOException; import java.sql.SQLException; import java.util.List; -import javax.mail.MessagingException; -import javax.servlet.http.HttpServletRequest; +import jakarta.mail.MessagingException; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.authorize.AuthorizeException; import org.dspace.content.Item; import org.dspace.core.Context; diff --git a/dspace-api/src/main/java/org/dspace/xmlworkflow/state/actions/Action.java b/dspace-api/src/main/java/org/dspace/xmlworkflow/state/actions/Action.java index 1cfa33b12170..d70fd17a109a 100644 --- a/dspace-api/src/main/java/org/dspace/xmlworkflow/state/actions/Action.java +++ b/dspace-api/src/main/java/org/dspace/xmlworkflow/state/actions/Action.java @@ -11,8 +11,8 @@ import java.sql.SQLException; import java.util.ArrayList; import java.util.List; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.authorize.AuthorizeException; import org.dspace.content.DCDate; import org.dspace.content.MetadataSchemaEnum; diff --git a/dspace-api/src/main/java/org/dspace/xmlworkflow/state/actions/processingaction/AcceptEditRejectAction.java b/dspace-api/src/main/java/org/dspace/xmlworkflow/state/actions/processingaction/AcceptEditRejectAction.java index bdf03591ae30..fd40cd862c98 100644 --- a/dspace-api/src/main/java/org/dspace/xmlworkflow/state/actions/processingaction/AcceptEditRejectAction.java +++ b/dspace-api/src/main/java/org/dspace/xmlworkflow/state/actions/processingaction/AcceptEditRejectAction.java @@ -11,8 +11,8 @@ import java.sql.SQLException; import java.util.ArrayList; import java.util.List; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.util.Util; import org.dspace.authorize.AuthorizeException; import org.dspace.core.Context; diff --git a/dspace-api/src/main/java/org/dspace/xmlworkflow/state/actions/processingaction/FinalEditAction.java b/dspace-api/src/main/java/org/dspace/xmlworkflow/state/actions/processingaction/FinalEditAction.java index d527c6ab3d9d..dc7619936a94 100644 --- a/dspace-api/src/main/java/org/dspace/xmlworkflow/state/actions/processingaction/FinalEditAction.java +++ b/dspace-api/src/main/java/org/dspace/xmlworkflow/state/actions/processingaction/FinalEditAction.java @@ -10,8 +10,8 @@ import java.sql.SQLException; import java.util.ArrayList; import java.util.List; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.util.Util; import org.dspace.authorize.AuthorizeException; import org.dspace.core.Context; diff --git a/dspace-api/src/main/java/org/dspace/xmlworkflow/state/actions/processingaction/ProcessingAction.java b/dspace-api/src/main/java/org/dspace/xmlworkflow/state/actions/processingaction/ProcessingAction.java index 7a1c62adbd1e..6a41f40398cb 100644 --- a/dspace-api/src/main/java/org/dspace/xmlworkflow/state/actions/processingaction/ProcessingAction.java +++ b/dspace-api/src/main/java/org/dspace/xmlworkflow/state/actions/processingaction/ProcessingAction.java @@ -9,8 +9,8 @@ import java.io.IOException; import java.sql.SQLException; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.authorize.AuthorizeException; import org.dspace.content.service.ItemService; import org.dspace.core.Context; diff --git a/dspace-api/src/main/java/org/dspace/xmlworkflow/state/actions/processingaction/ReviewAction.java b/dspace-api/src/main/java/org/dspace/xmlworkflow/state/actions/processingaction/ReviewAction.java index ce755decb6ca..47de9d659f9f 100644 --- a/dspace-api/src/main/java/org/dspace/xmlworkflow/state/actions/processingaction/ReviewAction.java +++ b/dspace-api/src/main/java/org/dspace/xmlworkflow/state/actions/processingaction/ReviewAction.java @@ -11,8 +11,8 @@ import java.sql.SQLException; import java.util.ArrayList; import java.util.List; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.util.Util; import org.dspace.authorize.AuthorizeException; import org.dspace.core.Context; diff --git a/dspace-api/src/main/java/org/dspace/xmlworkflow/state/actions/processingaction/ScoreEvaluationAction.java b/dspace-api/src/main/java/org/dspace/xmlworkflow/state/actions/processingaction/ScoreEvaluationAction.java index 16d35b36683a..c8fd3ecb6692 100644 --- a/dspace-api/src/main/java/org/dspace/xmlworkflow/state/actions/processingaction/ScoreEvaluationAction.java +++ b/dspace-api/src/main/java/org/dspace/xmlworkflow/state/actions/processingaction/ScoreEvaluationAction.java @@ -14,8 +14,8 @@ import java.sql.SQLException; import java.util.ArrayList; import java.util.List; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.authorize.AuthorizeException; import org.dspace.content.Item; import org.dspace.content.MetadataSchemaEnum; diff --git a/dspace-api/src/main/java/org/dspace/xmlworkflow/state/actions/processingaction/ScoreReviewAction.java b/dspace-api/src/main/java/org/dspace/xmlworkflow/state/actions/processingaction/ScoreReviewAction.java index 43a3decacc7e..a8ed4fd3dae9 100644 --- a/dspace-api/src/main/java/org/dspace/xmlworkflow/state/actions/processingaction/ScoreReviewAction.java +++ b/dspace-api/src/main/java/org/dspace/xmlworkflow/state/actions/processingaction/ScoreReviewAction.java @@ -11,8 +11,8 @@ import java.util.Arrays; import java.util.Collections; import java.util.List; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.apache.commons.lang.StringUtils; import org.apache.logging.log4j.LogManager; import org.apache.logging.log4j.Logger; diff --git a/dspace-api/src/main/java/org/dspace/xmlworkflow/state/actions/processingaction/SelectReviewerAction.java b/dspace-api/src/main/java/org/dspace/xmlworkflow/state/actions/processingaction/SelectReviewerAction.java index 0e8ab40a5205..4adeb127eaed 100644 --- a/dspace-api/src/main/java/org/dspace/xmlworkflow/state/actions/processingaction/SelectReviewerAction.java +++ b/dspace-api/src/main/java/org/dspace/xmlworkflow/state/actions/processingaction/SelectReviewerAction.java @@ -12,9 +12,9 @@ import java.util.Arrays; import java.util.List; import java.util.UUID; -import javax.annotation.Nullable; -import javax.servlet.http.HttpServletRequest; +import jakarta.annotation.Nullable; +import jakarta.servlet.http.HttpServletRequest; import org.apache.commons.lang.ArrayUtils; import org.apache.commons.lang3.StringUtils; import org.apache.logging.log4j.LogManager; diff --git a/dspace-api/src/main/java/org/dspace/xmlworkflow/state/actions/processingaction/SingleUserReviewAction.java b/dspace-api/src/main/java/org/dspace/xmlworkflow/state/actions/processingaction/SingleUserReviewAction.java index b3fe896ace24..64e0957b65b7 100644 --- a/dspace-api/src/main/java/org/dspace/xmlworkflow/state/actions/processingaction/SingleUserReviewAction.java +++ b/dspace-api/src/main/java/org/dspace/xmlworkflow/state/actions/processingaction/SingleUserReviewAction.java @@ -11,8 +11,8 @@ import java.sql.SQLException; import java.util.ArrayList; import java.util.List; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.apache.logging.log4j.LogManager; import org.apache.logging.log4j.Logger; import org.dspace.app.util.Util; diff --git a/dspace-api/src/main/java/org/dspace/xmlworkflow/state/actions/userassignment/AssignAction.java b/dspace-api/src/main/java/org/dspace/xmlworkflow/state/actions/userassignment/AssignAction.java index e837a8a89394..4d645ae6a5c1 100644 --- a/dspace-api/src/main/java/org/dspace/xmlworkflow/state/actions/userassignment/AssignAction.java +++ b/dspace-api/src/main/java/org/dspace/xmlworkflow/state/actions/userassignment/AssignAction.java @@ -10,8 +10,8 @@ import java.sql.SQLException; import java.util.ArrayList; import java.util.List; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.core.Context; import org.dspace.xmlworkflow.RoleMembers; import org.dspace.xmlworkflow.WorkflowConfigurationException; diff --git a/dspace-api/src/main/java/org/dspace/xmlworkflow/state/actions/userassignment/AssignOriginalSubmitterAction.java b/dspace-api/src/main/java/org/dspace/xmlworkflow/state/actions/userassignment/AssignOriginalSubmitterAction.java index 0cd82fe77084..79e2ffc90068 100644 --- a/dspace-api/src/main/java/org/dspace/xmlworkflow/state/actions/userassignment/AssignOriginalSubmitterAction.java +++ b/dspace-api/src/main/java/org/dspace/xmlworkflow/state/actions/userassignment/AssignOriginalSubmitterAction.java @@ -12,9 +12,9 @@ import java.util.ArrayList; import java.util.Arrays; import java.util.List; -import javax.mail.MessagingException; -import javax.servlet.http.HttpServletRequest; +import jakarta.mail.MessagingException; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.authorize.AuthorizeException; import org.dspace.core.Context; import org.dspace.core.LogHelper; diff --git a/dspace-api/src/main/java/org/dspace/xmlworkflow/state/actions/userassignment/AutoAssignAction.java b/dspace-api/src/main/java/org/dspace/xmlworkflow/state/actions/userassignment/AutoAssignAction.java index 401a7c506b98..cf3ceff5752a 100644 --- a/dspace-api/src/main/java/org/dspace/xmlworkflow/state/actions/userassignment/AutoAssignAction.java +++ b/dspace-api/src/main/java/org/dspace/xmlworkflow/state/actions/userassignment/AutoAssignAction.java @@ -11,8 +11,8 @@ import java.sql.SQLException; import java.util.ArrayList; import java.util.List; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.apache.logging.log4j.Logger; import org.dspace.authorize.AuthorizeException; import org.dspace.core.Context; diff --git a/dspace-api/src/main/java/org/dspace/xmlworkflow/state/actions/userassignment/ClaimAction.java b/dspace-api/src/main/java/org/dspace/xmlworkflow/state/actions/userassignment/ClaimAction.java index 21fcf6f30996..385d6feea666 100644 --- a/dspace-api/src/main/java/org/dspace/xmlworkflow/state/actions/userassignment/ClaimAction.java +++ b/dspace-api/src/main/java/org/dspace/xmlworkflow/state/actions/userassignment/ClaimAction.java @@ -11,9 +11,9 @@ import java.sql.SQLException; import java.util.ArrayList; import java.util.List; -import javax.mail.MessagingException; -import javax.servlet.http.HttpServletRequest; +import jakarta.mail.MessagingException; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.authorize.AuthorizeException; import org.dspace.core.Context; import org.dspace.core.LogHelper; diff --git a/dspace-api/src/main/java/org/dspace/xmlworkflow/state/actions/userassignment/InheritUsersAction.java b/dspace-api/src/main/java/org/dspace/xmlworkflow/state/actions/userassignment/InheritUsersAction.java index 1ffce1afdb4e..25be8da25cfc 100644 --- a/dspace-api/src/main/java/org/dspace/xmlworkflow/state/actions/userassignment/InheritUsersAction.java +++ b/dspace-api/src/main/java/org/dspace/xmlworkflow/state/actions/userassignment/InheritUsersAction.java @@ -10,8 +10,8 @@ import java.sql.SQLException; import java.util.ArrayList; import java.util.List; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.core.Context; import org.dspace.xmlworkflow.RoleMembers; import org.dspace.xmlworkflow.WorkflowConfigurationException; diff --git a/dspace-api/src/main/java/org/dspace/xmlworkflow/state/actions/userassignment/NoUserSelectionAction.java b/dspace-api/src/main/java/org/dspace/xmlworkflow/state/actions/userassignment/NoUserSelectionAction.java index d23a98cedbbf..9606892554a8 100644 --- a/dspace-api/src/main/java/org/dspace/xmlworkflow/state/actions/userassignment/NoUserSelectionAction.java +++ b/dspace-api/src/main/java/org/dspace/xmlworkflow/state/actions/userassignment/NoUserSelectionAction.java @@ -9,8 +9,8 @@ import java.util.ArrayList; import java.util.List; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.core.Context; import org.dspace.xmlworkflow.RoleMembers; import org.dspace.xmlworkflow.state.Step; diff --git a/dspace-api/src/main/java/org/dspace/xmlworkflow/state/actions/userassignment/UserSelectionAction.java b/dspace-api/src/main/java/org/dspace/xmlworkflow/state/actions/userassignment/UserSelectionAction.java index 6a0d3e9ca686..06db5137271b 100644 --- a/dspace-api/src/main/java/org/dspace/xmlworkflow/state/actions/userassignment/UserSelectionAction.java +++ b/dspace-api/src/main/java/org/dspace/xmlworkflow/state/actions/userassignment/UserSelectionAction.java @@ -9,8 +9,8 @@ import java.io.IOException; import java.sql.SQLException; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.apache.logging.log4j.Logger; import org.dspace.authorize.AuthorizeException; import org.dspace.core.Context; diff --git a/dspace-api/src/main/java/org/dspace/xmlworkflow/storedcomponents/ClaimedTask.java b/dspace-api/src/main/java/org/dspace/xmlworkflow/storedcomponents/ClaimedTask.java index 8f4794cb3b45..adaf0ec06e2c 100644 --- a/dspace-api/src/main/java/org/dspace/xmlworkflow/storedcomponents/ClaimedTask.java +++ b/dspace-api/src/main/java/org/dspace/xmlworkflow/storedcomponents/ClaimedTask.java @@ -7,17 +7,16 @@ */ package org.dspace.xmlworkflow.storedcomponents; -import javax.persistence.Column; -import javax.persistence.Entity; -import javax.persistence.FetchType; -import javax.persistence.GeneratedValue; -import javax.persistence.GenerationType; -import javax.persistence.Id; -import javax.persistence.JoinColumn; -import javax.persistence.ManyToOne; -import javax.persistence.SequenceGenerator; -import javax.persistence.Table; - +import jakarta.persistence.Column; +import jakarta.persistence.Entity; +import jakarta.persistence.FetchType; +import jakarta.persistence.GeneratedValue; +import jakarta.persistence.GenerationType; +import jakarta.persistence.Id; +import jakarta.persistence.JoinColumn; +import jakarta.persistence.ManyToOne; +import jakarta.persistence.SequenceGenerator; +import jakarta.persistence.Table; import org.dspace.core.Context; import org.dspace.core.ReloadableEntity; import org.dspace.eperson.EPerson; @@ -44,18 +43,12 @@ public class ClaimedTask implements ReloadableEntity { @JoinColumn(name = "workflowitem_id") private XmlWorkflowItem workflowItem; - // @Column(name = "workflow_id") -// @Lob @Column(name = "workflow_id", columnDefinition = "text") private String workflowId; - // @Column(name = "step_id") -// @Lob @Column(name = "step_id", columnDefinition = "text") private String stepId; - // @Column(name = "action_id") -// @Lob @Column(name = "action_id", columnDefinition = "text") private String actionId; diff --git a/dspace-api/src/main/java/org/dspace/xmlworkflow/storedcomponents/CollectionRole.java b/dspace-api/src/main/java/org/dspace/xmlworkflow/storedcomponents/CollectionRole.java index c9a7995e0390..4cbaf1c4112f 100644 --- a/dspace-api/src/main/java/org/dspace/xmlworkflow/storedcomponents/CollectionRole.java +++ b/dspace-api/src/main/java/org/dspace/xmlworkflow/storedcomponents/CollectionRole.java @@ -8,17 +8,17 @@ package org.dspace.xmlworkflow.storedcomponents; import java.sql.SQLException; -import javax.persistence.Column; -import javax.persistence.Entity; -import javax.persistence.FetchType; -import javax.persistence.GeneratedValue; -import javax.persistence.GenerationType; -import javax.persistence.Id; -import javax.persistence.JoinColumn; -import javax.persistence.ManyToOne; -import javax.persistence.SequenceGenerator; -import javax.persistence.Table; +import jakarta.persistence.Column; +import jakarta.persistence.Entity; +import jakarta.persistence.FetchType; +import jakarta.persistence.GeneratedValue; +import jakarta.persistence.GenerationType; +import jakarta.persistence.Id; +import jakarta.persistence.JoinColumn; +import jakarta.persistence.ManyToOne; +import jakarta.persistence.SequenceGenerator; +import jakarta.persistence.Table; import org.dspace.content.Collection; import org.dspace.core.Context; import org.dspace.core.ReloadableEntity; @@ -44,8 +44,6 @@ public class CollectionRole implements ReloadableEntity { @SequenceGenerator(name = "cwf_collectionrole_seq", sequenceName = "cwf_collectionrole_seq", allocationSize = 1) private Integer id; - // @Column(name = "role_id") - // @Lob @Column(name = "role_id", columnDefinition = "text") private String roleId; diff --git a/dspace-api/src/main/java/org/dspace/xmlworkflow/storedcomponents/InProgressUser.java b/dspace-api/src/main/java/org/dspace/xmlworkflow/storedcomponents/InProgressUser.java index efbd26bde5f5..38f410566d1b 100644 --- a/dspace-api/src/main/java/org/dspace/xmlworkflow/storedcomponents/InProgressUser.java +++ b/dspace-api/src/main/java/org/dspace/xmlworkflow/storedcomponents/InProgressUser.java @@ -7,17 +7,16 @@ */ package org.dspace.xmlworkflow.storedcomponents; -import javax.persistence.Column; -import javax.persistence.Entity; -import javax.persistence.FetchType; -import javax.persistence.GeneratedValue; -import javax.persistence.GenerationType; -import javax.persistence.Id; -import javax.persistence.JoinColumn; -import javax.persistence.ManyToOne; -import javax.persistence.SequenceGenerator; -import javax.persistence.Table; - +import jakarta.persistence.Column; +import jakarta.persistence.Entity; +import jakarta.persistence.FetchType; +import jakarta.persistence.GeneratedValue; +import jakarta.persistence.GenerationType; +import jakarta.persistence.Id; +import jakarta.persistence.JoinColumn; +import jakarta.persistence.ManyToOne; +import jakarta.persistence.SequenceGenerator; +import jakarta.persistence.Table; import org.dspace.core.Context; import org.dspace.core.ReloadableEntity; import org.dspace.eperson.EPerson; diff --git a/dspace-api/src/main/java/org/dspace/xmlworkflow/storedcomponents/PoolTask.java b/dspace-api/src/main/java/org/dspace/xmlworkflow/storedcomponents/PoolTask.java index 9cfc9ea06826..0c6b01f5c1fa 100644 --- a/dspace-api/src/main/java/org/dspace/xmlworkflow/storedcomponents/PoolTask.java +++ b/dspace-api/src/main/java/org/dspace/xmlworkflow/storedcomponents/PoolTask.java @@ -7,18 +7,17 @@ */ package org.dspace.xmlworkflow.storedcomponents; -import javax.persistence.Column; -import javax.persistence.Entity; -import javax.persistence.FetchType; -import javax.persistence.GeneratedValue; -import javax.persistence.GenerationType; -import javax.persistence.Id; -import javax.persistence.JoinColumn; -import javax.persistence.ManyToOne; -import javax.persistence.OneToOne; -import javax.persistence.SequenceGenerator; -import javax.persistence.Table; - +import jakarta.persistence.Column; +import jakarta.persistence.Entity; +import jakarta.persistence.FetchType; +import jakarta.persistence.GeneratedValue; +import jakarta.persistence.GenerationType; +import jakarta.persistence.Id; +import jakarta.persistence.JoinColumn; +import jakarta.persistence.ManyToOne; +import jakarta.persistence.OneToOne; +import jakarta.persistence.SequenceGenerator; +import jakarta.persistence.Table; import org.dspace.core.Context; import org.dspace.core.ReloadableEntity; import org.dspace.eperson.EPerson; @@ -46,18 +45,12 @@ public class PoolTask implements ReloadableEntity { @JoinColumn(name = "workflowitem_id") private XmlWorkflowItem workflowItem; - // @Column(name = "workflow_id") -// @Lob @Column(name = "workflow_id", columnDefinition = "text") private String workflowId; - // @Column(name = "step_id") -// @Lob @Column(name = "step_id", columnDefinition = "text") private String stepId; - // @Column(name = "action_id") -// @Lob @Column(name = "action_id", columnDefinition = "text") private String actionId; diff --git a/dspace-api/src/main/java/org/dspace/xmlworkflow/storedcomponents/WorkflowItemRole.java b/dspace-api/src/main/java/org/dspace/xmlworkflow/storedcomponents/WorkflowItemRole.java index cc6df9731baa..a0d46c27d1eb 100644 --- a/dspace-api/src/main/java/org/dspace/xmlworkflow/storedcomponents/WorkflowItemRole.java +++ b/dspace-api/src/main/java/org/dspace/xmlworkflow/storedcomponents/WorkflowItemRole.java @@ -8,17 +8,17 @@ package org.dspace.xmlworkflow.storedcomponents; import java.sql.SQLException; -import javax.persistence.Column; -import javax.persistence.Entity; -import javax.persistence.FetchType; -import javax.persistence.GeneratedValue; -import javax.persistence.GenerationType; -import javax.persistence.Id; -import javax.persistence.JoinColumn; -import javax.persistence.OneToOne; -import javax.persistence.SequenceGenerator; -import javax.persistence.Table; +import jakarta.persistence.Column; +import jakarta.persistence.Entity; +import jakarta.persistence.FetchType; +import jakarta.persistence.GeneratedValue; +import jakarta.persistence.GenerationType; +import jakarta.persistence.Id; +import jakarta.persistence.JoinColumn; +import jakarta.persistence.OneToOne; +import jakarta.persistence.SequenceGenerator; +import jakarta.persistence.Table; import org.dspace.core.Context; import org.dspace.core.ReloadableEntity; import org.dspace.eperson.EPerson; @@ -44,8 +44,6 @@ public class WorkflowItemRole implements ReloadableEntity { @SequenceGenerator(name = "cwf_workflowitemrole_seq", sequenceName = "cwf_workflowitemrole_seq", allocationSize = 1) private Integer id; - // @Column(name = "role_id") -// @Lob @Column(name = "role_id", columnDefinition = "text") private String roleId; diff --git a/dspace-api/src/main/java/org/dspace/xmlworkflow/storedcomponents/XmlWorkflowItem.java b/dspace-api/src/main/java/org/dspace/xmlworkflow/storedcomponents/XmlWorkflowItem.java index f6ffe6049a5e..529a35bda3a2 100644 --- a/dspace-api/src/main/java/org/dspace/xmlworkflow/storedcomponents/XmlWorkflowItem.java +++ b/dspace-api/src/main/java/org/dspace/xmlworkflow/storedcomponents/XmlWorkflowItem.java @@ -7,18 +7,17 @@ */ package org.dspace.xmlworkflow.storedcomponents; -import javax.persistence.Column; -import javax.persistence.Entity; -import javax.persistence.FetchType; -import javax.persistence.GeneratedValue; -import javax.persistence.GenerationType; -import javax.persistence.Id; -import javax.persistence.JoinColumn; -import javax.persistence.ManyToOne; -import javax.persistence.OneToOne; -import javax.persistence.SequenceGenerator; -import javax.persistence.Table; - +import jakarta.persistence.Column; +import jakarta.persistence.Entity; +import jakarta.persistence.FetchType; +import jakarta.persistence.GeneratedValue; +import jakarta.persistence.GenerationType; +import jakarta.persistence.Id; +import jakarta.persistence.JoinColumn; +import jakarta.persistence.ManyToOne; +import jakarta.persistence.OneToOne; +import jakarta.persistence.SequenceGenerator; +import jakarta.persistence.Table; import org.dspace.content.Collection; import org.dspace.content.Item; import org.dspace.core.Context; diff --git a/dspace-api/src/main/java/org/dspace/xmlworkflow/storedcomponents/dao/impl/ClaimedTaskDAOImpl.java b/dspace-api/src/main/java/org/dspace/xmlworkflow/storedcomponents/dao/impl/ClaimedTaskDAOImpl.java index 956a4648c53a..70fe74de8a2f 100644 --- a/dspace-api/src/main/java/org/dspace/xmlworkflow/storedcomponents/dao/impl/ClaimedTaskDAOImpl.java +++ b/dspace-api/src/main/java/org/dspace/xmlworkflow/storedcomponents/dao/impl/ClaimedTaskDAOImpl.java @@ -9,10 +9,10 @@ import java.sql.SQLException; import java.util.List; -import javax.persistence.criteria.CriteriaBuilder; -import javax.persistence.criteria.CriteriaQuery; -import javax.persistence.criteria.Root; +import jakarta.persistence.criteria.CriteriaBuilder; +import jakarta.persistence.criteria.CriteriaQuery; +import jakarta.persistence.criteria.Root; import org.dspace.core.AbstractHibernateDAO; import org.dspace.core.Context; import org.dspace.eperson.EPerson; diff --git a/dspace-api/src/main/java/org/dspace/xmlworkflow/storedcomponents/dao/impl/CollectionRoleDAOImpl.java b/dspace-api/src/main/java/org/dspace/xmlworkflow/storedcomponents/dao/impl/CollectionRoleDAOImpl.java index b3cd32c74f0d..5c19fd5a8e59 100644 --- a/dspace-api/src/main/java/org/dspace/xmlworkflow/storedcomponents/dao/impl/CollectionRoleDAOImpl.java +++ b/dspace-api/src/main/java/org/dspace/xmlworkflow/storedcomponents/dao/impl/CollectionRoleDAOImpl.java @@ -9,11 +9,11 @@ import java.sql.SQLException; import java.util.List; -import javax.persistence.Query; -import javax.persistence.criteria.CriteriaBuilder; -import javax.persistence.criteria.CriteriaQuery; -import javax.persistence.criteria.Root; +import jakarta.persistence.Query; +import jakarta.persistence.criteria.CriteriaBuilder; +import jakarta.persistence.criteria.CriteriaQuery; +import jakarta.persistence.criteria.Root; import org.dspace.content.Collection; import org.dspace.core.AbstractHibernateDAO; import org.dspace.core.Context; diff --git a/dspace-api/src/main/java/org/dspace/xmlworkflow/storedcomponents/dao/impl/InProgressUserDAOImpl.java b/dspace-api/src/main/java/org/dspace/xmlworkflow/storedcomponents/dao/impl/InProgressUserDAOImpl.java index 783d403c054a..a02a947e2c68 100644 --- a/dspace-api/src/main/java/org/dspace/xmlworkflow/storedcomponents/dao/impl/InProgressUserDAOImpl.java +++ b/dspace-api/src/main/java/org/dspace/xmlworkflow/storedcomponents/dao/impl/InProgressUserDAOImpl.java @@ -9,10 +9,10 @@ import java.sql.SQLException; import java.util.List; -import javax.persistence.criteria.CriteriaBuilder; -import javax.persistence.criteria.CriteriaQuery; -import javax.persistence.criteria.Root; +import jakarta.persistence.criteria.CriteriaBuilder; +import jakarta.persistence.criteria.CriteriaQuery; +import jakarta.persistence.criteria.Root; import org.dspace.core.AbstractHibernateDAO; import org.dspace.core.Context; import org.dspace.eperson.EPerson; @@ -78,7 +78,7 @@ public int countInProgressUsers(Context context, XmlWorkflowItem workflowItem) t CriteriaQuery criteriaQuery = criteriaBuilder.createQuery(Long.class); Root inProgressUserRoot = criteriaQuery.from(InProgressUser.class); - + criteriaQuery.select(criteriaBuilder.count(inProgressUserRoot)); criteriaQuery.where(criteriaBuilder.and( criteriaBuilder.equal(inProgressUserRoot.get(InProgressUser_.workflowItem), workflowItem), criteriaBuilder.equal(inProgressUserRoot.get(InProgressUser_.finished), false) @@ -94,7 +94,7 @@ public int countFinishedUsers(Context context, XmlWorkflowItem workflowItem) thr CriteriaQuery criteriaQuery = criteriaBuilder.createQuery(Long.class); Root inProgressUserRoot = criteriaQuery.from(InProgressUser.class); - + criteriaQuery.select(criteriaBuilder.count(inProgressUserRoot)); criteriaQuery.where(criteriaBuilder.and( criteriaBuilder.equal(inProgressUserRoot.get(InProgressUser_.workflowItem), workflowItem), criteriaBuilder.equal(inProgressUserRoot.get(InProgressUser_.finished), true) diff --git a/dspace-api/src/main/java/org/dspace/xmlworkflow/storedcomponents/dao/impl/PoolTaskDAOImpl.java b/dspace-api/src/main/java/org/dspace/xmlworkflow/storedcomponents/dao/impl/PoolTaskDAOImpl.java index 0857a325b5df..2e95c2f9d0bb 100644 --- a/dspace-api/src/main/java/org/dspace/xmlworkflow/storedcomponents/dao/impl/PoolTaskDAOImpl.java +++ b/dspace-api/src/main/java/org/dspace/xmlworkflow/storedcomponents/dao/impl/PoolTaskDAOImpl.java @@ -9,10 +9,10 @@ import java.sql.SQLException; import java.util.List; -import javax.persistence.criteria.CriteriaBuilder; -import javax.persistence.criteria.CriteriaQuery; -import javax.persistence.criteria.Root; +import jakarta.persistence.criteria.CriteriaBuilder; +import jakarta.persistence.criteria.CriteriaQuery; +import jakarta.persistence.criteria.Root; import org.dspace.core.AbstractHibernateDAO; import org.dspace.core.Context; import org.dspace.eperson.EPerson; diff --git a/dspace-api/src/main/java/org/dspace/xmlworkflow/storedcomponents/dao/impl/WorkflowItemRoleDAOImpl.java b/dspace-api/src/main/java/org/dspace/xmlworkflow/storedcomponents/dao/impl/WorkflowItemRoleDAOImpl.java index fdc2413b5ffd..6dc2fc9601ce 100644 --- a/dspace-api/src/main/java/org/dspace/xmlworkflow/storedcomponents/dao/impl/WorkflowItemRoleDAOImpl.java +++ b/dspace-api/src/main/java/org/dspace/xmlworkflow/storedcomponents/dao/impl/WorkflowItemRoleDAOImpl.java @@ -9,10 +9,10 @@ import java.sql.SQLException; import java.util.List; -import javax.persistence.criteria.CriteriaBuilder; -import javax.persistence.criteria.CriteriaQuery; -import javax.persistence.criteria.Root; +import jakarta.persistence.criteria.CriteriaBuilder; +import jakarta.persistence.criteria.CriteriaQuery; +import jakarta.persistence.criteria.Root; import org.dspace.core.AbstractHibernateDAO; import org.dspace.core.Context; import org.dspace.eperson.EPerson; diff --git a/dspace-api/src/main/java/org/dspace/xmlworkflow/storedcomponents/dao/impl/XmlWorkflowItemDAOImpl.java b/dspace-api/src/main/java/org/dspace/xmlworkflow/storedcomponents/dao/impl/XmlWorkflowItemDAOImpl.java index 659a2123d90a..8994efae1af2 100644 --- a/dspace-api/src/main/java/org/dspace/xmlworkflow/storedcomponents/dao/impl/XmlWorkflowItemDAOImpl.java +++ b/dspace-api/src/main/java/org/dspace/xmlworkflow/storedcomponents/dao/impl/XmlWorkflowItemDAOImpl.java @@ -9,11 +9,11 @@ import java.sql.SQLException; import java.util.List; -import javax.persistence.criteria.CriteriaBuilder; -import javax.persistence.criteria.CriteriaQuery; -import javax.persistence.criteria.Join; -import javax.persistence.criteria.Root; +import jakarta.persistence.criteria.CriteriaBuilder; +import jakarta.persistence.criteria.CriteriaQuery; +import jakarta.persistence.criteria.Join; +import jakarta.persistence.criteria.Root; import org.dspace.content.Collection; import org.dspace.content.Item; import org.dspace.content.Item_; @@ -66,12 +66,11 @@ public int countAll(Context context) throws SQLException { @Override public int countAllInCollection(Context context, Collection collection) throws SQLException { - - CriteriaBuilder criteriaBuilder = getCriteriaBuilder(context); CriteriaQuery criteriaQuery = criteriaBuilder.createQuery(Long.class); Root xmlWorkflowItemRoot = criteriaQuery.from(XmlWorkflowItem.class); + criteriaQuery.select(criteriaBuilder.count(xmlWorkflowItemRoot)); if (collection != null) { criteriaQuery.where(criteriaBuilder.equal(xmlWorkflowItemRoot.get(XmlWorkflowItem_.collection), collection)); @@ -109,7 +108,8 @@ public int countBySubmitter(Context context, EPerson ep) throws SQLException { CriteriaBuilder criteriaBuilder = getCriteriaBuilder(context); CriteriaQuery criteriaQuery = criteriaBuilder.createQuery(Long.class); Root xmlWorkflowItemRoot = criteriaQuery.from(XmlWorkflowItem.class); - Join join = xmlWorkflowItemRoot.join("item"); + criteriaQuery.select(criteriaBuilder.count(xmlWorkflowItemRoot)); + Join join = xmlWorkflowItemRoot.join(XmlWorkflowItem_.item); criteriaQuery.where(criteriaBuilder.equal(join.get(Item_.submitter), ep)); return count(context, criteriaQuery, criteriaBuilder, xmlWorkflowItemRoot); } diff --git a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/h2/V7.6_2023.09.28__enforce_group_or_eperson_for_resourcepolicy.sql b/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/h2/V7.6_2023.09.28__enforce_group_or_eperson_for_resourcepolicy.sql new file mode 100644 index 000000000000..61f361625dd9 --- /dev/null +++ b/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/h2/V7.6_2023.09.28__enforce_group_or_eperson_for_resourcepolicy.sql @@ -0,0 +1,12 @@ +-- +-- The contents of this file are subject to the license and copyright +-- detailed in the LICENSE and NOTICE files at the root of the source +-- tree and available online at +-- +-- http://www.dspace.org/license/ +-- + +DELETE FROM ResourcePolicy WHERE eperson_id is null and epersongroup_id is null; + +ALTER TABLE ResourcePolicy ADD CONSTRAINT resourcepolicy_eperson_and_epersongroup_not_nullobject_chk + CHECK (eperson_id is not null or epersongroup_id is not null) ; diff --git a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/h2/V7.6_2024.03.07__set_eperson_process_nullable.sql b/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/h2/V7.6_2024.03.07__set_eperson_process_nullable.sql new file mode 100644 index 000000000000..39dc1115be49 --- /dev/null +++ b/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/h2/V7.6_2024.03.07__set_eperson_process_nullable.sql @@ -0,0 +1,9 @@ +-- +-- The contents of this file are subject to the license and copyright +-- detailed in the LICENSE and NOTICE files at the root of the source +-- tree and available online at +-- +-- http://www.dspace.org/license/ +-- + +ALTER TABLE process ALTER COLUMN user_id DROP NOT NULL; diff --git a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/h2/V7.6_2024.05.07__process_eperson_constraint.sql b/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/h2/V7.6_2024.05.07__process_eperson_constraint.sql new file mode 100644 index 000000000000..26de16f466ee --- /dev/null +++ b/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/h2/V7.6_2024.05.07__process_eperson_constraint.sql @@ -0,0 +1,13 @@ +-- +-- The contents of this file are subject to the license and copyright +-- detailed in the LICENSE and NOTICE files at the root of the source +-- tree and available online at +-- +-- http://www.dspace.org/license/ +-- + +-- If Process references an EPerson that no longer exists, set the "user_id" to null. +UPDATE process SET user_id = null WHERE NOT EXISTS (SELECT * FROM EPerson where uuid = process.user_id); + +-- Add new constraint where process.user_id is nullified if referenced EPerson is deleted. +ALTER TABLE process ADD CONSTRAINT process_eperson FOREIGN KEY (user_id) REFERENCES EPerson(uuid) ON DELETE SET NULL; diff --git a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/postgres/V7.6_2023.09.28__enforce_group_or_eperson_for_resourcepolicy.sql b/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/postgres/V7.6_2023.09.28__enforce_group_or_eperson_for_resourcepolicy.sql new file mode 100644 index 000000000000..61f361625dd9 --- /dev/null +++ b/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/postgres/V7.6_2023.09.28__enforce_group_or_eperson_for_resourcepolicy.sql @@ -0,0 +1,12 @@ +-- +-- The contents of this file are subject to the license and copyright +-- detailed in the LICENSE and NOTICE files at the root of the source +-- tree and available online at +-- +-- http://www.dspace.org/license/ +-- + +DELETE FROM ResourcePolicy WHERE eperson_id is null and epersongroup_id is null; + +ALTER TABLE ResourcePolicy ADD CONSTRAINT resourcepolicy_eperson_and_epersongroup_not_nullobject_chk + CHECK (eperson_id is not null or epersongroup_id is not null) ; diff --git a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/postgres/V7.6_2024.03.07__set_eperson_process_nullable.sql b/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/postgres/V7.6_2024.03.07__set_eperson_process_nullable.sql new file mode 100644 index 000000000000..39dc1115be49 --- /dev/null +++ b/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/postgres/V7.6_2024.03.07__set_eperson_process_nullable.sql @@ -0,0 +1,9 @@ +-- +-- The contents of this file are subject to the license and copyright +-- detailed in the LICENSE and NOTICE files at the root of the source +-- tree and available online at +-- +-- http://www.dspace.org/license/ +-- + +ALTER TABLE process ALTER COLUMN user_id DROP NOT NULL; diff --git a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/postgres/V7.6_2024.05.07__process_eperson_constraint.sql b/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/postgres/V7.6_2024.05.07__process_eperson_constraint.sql new file mode 100644 index 000000000000..26de16f466ee --- /dev/null +++ b/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/postgres/V7.6_2024.05.07__process_eperson_constraint.sql @@ -0,0 +1,13 @@ +-- +-- The contents of this file are subject to the license and copyright +-- detailed in the LICENSE and NOTICE files at the root of the source +-- tree and available online at +-- +-- http://www.dspace.org/license/ +-- + +-- If Process references an EPerson that no longer exists, set the "user_id" to null. +UPDATE process SET user_id = null WHERE NOT EXISTS (SELECT * FROM EPerson where uuid = process.user_id); + +-- Add new constraint where process.user_id is nullified if referenced EPerson is deleted. +ALTER TABLE process ADD CONSTRAINT process_eperson FOREIGN KEY (user_id) REFERENCES EPerson(uuid) ON DELETE SET NULL; diff --git a/dspace-api/src/main/resources/org/dspace/workflow/workflow-curation.xsd b/dspace-api/src/main/resources/org/dspace/workflow/workflow-curation.xsd index 184ee4bfb615..3c56e2a32399 100644 --- a/dspace-api/src/main/resources/org/dspace/workflow/workflow-curation.xsd +++ b/dspace-api/src/main/resources/org/dspace/workflow/workflow-curation.xsd @@ -11,9 +11,9 @@ + jaxb:version='3.0'> Workflow curation enables curation tasks to be assigned to diff --git a/dspace-api/src/test/data/dspaceFolder/config/item-submission.xml b/dspace-api/src/test/data/dspaceFolder/config/item-submission.xml index 2afe12f8fa40..3ceb629a4564 100644 --- a/dspace-api/src/test/data/dspaceFolder/config/item-submission.xml +++ b/dspace-api/src/test/data/dspaceFolder/config/item-submission.xml @@ -30,6 +30,7 @@ + @@ -523,6 +524,10 @@ + + + + diff --git a/dspace-api/src/test/data/dspaceFolder/config/local.cfg b/dspace-api/src/test/data/dspaceFolder/config/local.cfg index 78fba61398e9..3f8a1344a6ad 100644 --- a/dspace-api/src/test/data/dspaceFolder/config/local.cfg +++ b/dspace-api/src/test/data/dspaceFolder/config/local.cfg @@ -246,3 +246,9 @@ qaevents.enabled = true ldn.ip-range.enabled = true ldn.notify.inbox.block-untrusted = true ldn.notify.inbox.block-untrusted-ip = true + +########################################### +# ERROR LOGGING # +########################################### +# Log full stacktrace of other common 4xx errors (for easier debugging of these errors in tests) +logging.server.include-stacktrace-for-httpcode = 422, 400 \ No newline at end of file diff --git a/dspace-api/src/test/data/dspaceFolder/config/spring/api/item-filters.xml b/dspace-api/src/test/data/dspaceFolder/config/spring/api/item-filters.xml index 33cea0b7e871..cb599aad2acc 100644 --- a/dspace-api/src/test/data/dspaceFolder/config/spring/api/item-filters.xml +++ b/dspace-api/src/test/data/dspaceFolder/config/spring/api/item-filters.xml @@ -295,8 +295,7 @@ - + @@ -352,8 +351,7 @@ - + diff --git a/dspace-api/src/test/data/dspaceFolder/config/spring/api/solr-services.xml b/dspace-api/src/test/data/dspaceFolder/config/spring/api/solr-services.xml index 5902628a868f..2e41ccad4fd3 100644 --- a/dspace-api/src/test/data/dspaceFolder/config/spring/api/solr-services.xml +++ b/dspace-api/src/test/data/dspaceFolder/config/spring/api/solr-services.xml @@ -38,8 +38,6 @@ - @@ -64,4 +62,10 @@ + + Connection to an embedded Solr instance. + + diff --git a/dspace-api/src/test/java/org/dspace/AbstractIntegrationTestWithDatabase.java b/dspace-api/src/test/java/org/dspace/AbstractIntegrationTestWithDatabase.java index f0590cbf237b..697970533b59 100644 --- a/dspace-api/src/test/java/org/dspace/AbstractIntegrationTestWithDatabase.java +++ b/dspace-api/src/test/java/org/dspace/AbstractIntegrationTestWithDatabase.java @@ -35,7 +35,6 @@ import org.dspace.eperson.service.GroupService; import org.dspace.kernel.ServiceManager; import org.dspace.qaevent.MockQAEventService; -import org.dspace.qaevent.service.QAEventService; import org.dspace.services.factory.DSpaceServicesFactory; import org.dspace.statistics.MockSolrLoggerServiceImpl; import org.dspace.statistics.MockSolrStatisticsCore; @@ -193,19 +192,20 @@ public void destroy() throws Exception { AbstractBuilder.cleanupObjects(); parentCommunity = null; cleanupContext(); + } catch (Exception e) { + throw new RuntimeException("Error cleaning up builder objects & context object", e); + } - ServiceManager serviceManager = DSpaceServicesFactory.getInstance().getServiceManager(); - - getFirst(serviceManager, MockSolrSearchCore.class).reset(); - getFirst(serviceManager, MockSolrStatisticsCore.class).reset(); - getFirst(serviceManager, MockSolrLoggerServiceImpl.class).reset(); - getFirst(serviceManager, MockAuthoritySolrServiceImpl.class).reset(); - getFirst(serviceManager, MockSolrDedupCore.class).reset(); + ServiceManager serviceManager = DSpaceServicesFactory.getInstance().getServiceManager(); - MockQAEventService qaEventService = serviceManager - .getServiceByName(QAEventService.class.getName(), MockQAEventService.class); - qaEventService.reset(); + getFirst(serviceManager, MockSolrSearchCore.class).reset(); + getFirst(serviceManager, MockSolrStatisticsCore.class).reset(); + getFirst(serviceManager, MockSolrLoggerServiceImpl.class).reset(); + getFirst(serviceManager, MockAuthoritySolrServiceImpl.class).reset(); + getFirst(serviceManager, MockSolrDedupCore.class).reset(); + getFirst(serviceManager, MockQAEventService.class).reset(); + try { // Reload our ConfigurationService (to reset configs to defaults again) DSpaceServicesFactory.getInstance().getConfigurationService().reloadConfig(); @@ -220,7 +220,7 @@ public void destroy() throws Exception { // NOTE: we explicitly do NOT destroy our default eperson & admin as they // are cached and reused for all tests. This speeds up all tests. } catch (Exception e) { - throw new RuntimeException(e); + throw new RuntimeException("Error reloading configuration & resetting builders", e); } } diff --git a/dspace-api/src/test/java/org/dspace/access/status/DefaultAccessStatusHelperTest.java b/dspace-api/src/test/java/org/dspace/access/status/DefaultAccessStatusHelperTest.java index 51291ee9850d..bc1fa8a9bb22 100644 --- a/dspace-api/src/test/java/org/dspace/access/status/DefaultAccessStatusHelperTest.java +++ b/dspace-api/src/test/java/org/dspace/access/status/DefaultAccessStatusHelperTest.java @@ -262,10 +262,9 @@ public void testWithEmbargo() throws Exception { bitstream.setName(context, "primary"); bundle.setPrimaryBitstreamID(bitstream); List policies = new ArrayList<>(); - ResourcePolicy policy = resourcePolicyService.create(context); - policy.setRpName("Embargo"); Group group = groupService.findByName(context, Group.ANONYMOUS); - policy.setGroup(group); + ResourcePolicy policy = resourcePolicyService.create(context, null, group); + policy.setRpName("Embargo"); policy.setAction(Constants.READ); policy.setStartDate(dateFrom(9999, 12, 31)); policies.add(policy); @@ -291,10 +290,9 @@ public void testWithDateRestriction() throws Exception { bitstream.setName(context, "primary"); bundle.setPrimaryBitstreamID(bitstream); List policies = new ArrayList<>(); - ResourcePolicy policy = resourcePolicyService.create(context); - policy.setRpName("Restriction"); Group group = groupService.findByName(context, Group.ANONYMOUS); - policy.setGroup(group); + ResourcePolicy policy = resourcePolicyService.create(context, null, group); + policy.setRpName("Restriction"); policy.setAction(Constants.READ); policy.setStartDate(dateFrom(10000, 1, 1)); policies.add(policy); @@ -318,10 +316,9 @@ public void testWithGroupRestriction() throws Exception { bitstream.setName(context, "primary"); bundle.setPrimaryBitstreamID(bitstream); List policies = new ArrayList<>(); - ResourcePolicy policy = resourcePolicyService.create(context); - policy.setRpName("Restriction"); Group group = groupService.findByName(context, Group.ADMIN); - policy.setGroup(group); + ResourcePolicy policy = resourcePolicyService.create(context, null, group); + policy.setRpName("Restriction"); policy.setAction(Constants.READ); policies.add(policy); authorizeService.removeAllPolicies(context, bitstream); @@ -381,10 +378,9 @@ public void testWithPrimaryAndMultipleBitstreams() throws Exception { new ByteArrayInputStream("1".getBytes(StandardCharsets.UTF_8))); bundle.setPrimaryBitstreamID(primaryBitstream); List policies = new ArrayList<>(); - ResourcePolicy policy = resourcePolicyService.create(context); - policy.setRpName("Embargo"); Group group = groupService.findByName(context, Group.ANONYMOUS); - policy.setGroup(group); + ResourcePolicy policy = resourcePolicyService.create(context, null, group); + policy.setRpName("Embargo"); policy.setAction(Constants.READ); policy.setStartDate(dateFrom(9999, 12, 31)); policies.add(policy); @@ -412,10 +408,9 @@ public void testWithNoPrimaryAndMultipleBitstreams() throws Exception { Bitstream anotherBitstream = bitstreamService.create(context, bundle, new ByteArrayInputStream("1".getBytes(StandardCharsets.UTF_8))); List policies = new ArrayList<>(); - ResourcePolicy policy = resourcePolicyService.create(context); - policy.setRpName("Embargo"); Group group = groupService.findByName(context, Group.ANONYMOUS); - policy.setGroup(group); + ResourcePolicy policy = resourcePolicyService.create(context, null, group); + policy.setRpName("Embargo"); policy.setAction(Constants.READ); policy.setStartDate(dateFrom(9999, 12, 31)); policies.add(policy); diff --git a/dspace-api/src/test/java/org/dspace/app/bulkedit/MetadataImportIT.java b/dspace-api/src/test/java/org/dspace/app/bulkedit/MetadataImportIT.java index 79cf6f56d56d..d44b91c6de7f 100644 --- a/dspace-api/src/test/java/org/dspace/app/bulkedit/MetadataImportIT.java +++ b/dspace-api/src/test/java/org/dspace/app/bulkedit/MetadataImportIT.java @@ -9,12 +9,12 @@ import static junit.framework.TestCase.assertEquals; import static junit.framework.TestCase.assertTrue; +import static junit.framework.TestCase.fail; import java.io.BufferedWriter; import java.io.File; import java.io.FileOutputStream; import java.io.OutputStreamWriter; -import java.sql.SQLException; import java.util.List; import org.apache.commons.cli.ParseException; @@ -230,9 +230,10 @@ public void personMetadataImportTest() throws Exception { @Test public void metadataImportRemovingValueTest() throws Exception { - context.turnOffAuthorisationSystem(); - Item item = ItemBuilder.createItem(context,personCollection).withAuthor("TestAuthorToRemove").withTitle("title") + String itemTitle = "Testing removing author"; + Item item = ItemBuilder.createItem(context,personCollection).withAuthor("TestAuthorToRemove") + .withTitle(itemTitle) .build(); context.restoreAuthSystemState(); @@ -244,19 +245,21 @@ public void metadataImportRemovingValueTest() throws Exception { String[] csv = {"id,collection,dc.title,dc.contributor.author[*]", item.getID().toString() + "," + personCollection.getHandle() + "," + item.getName() + ","}; performImportScript(csv); - item = findItemByName("title"); + item = findItemByName(itemTitle); assertEquals(0, itemService.getMetadata(item, "dc", "contributor", "author", Item.ANY).size()); } - private Item findItemByName(String name) throws SQLException { - Item importedItem = null; - List allItems = IteratorUtils.toList(itemService.findAll(context)); - for (Item item : allItems) { - if (item.getName().equals(name)) { - importedItem = item; - } + private Item findItemByName(String name) throws Exception { + List items = + IteratorUtils.toList(itemService.findByMetadataField(context, "dc", "title", null, name)); + + if (items != null && !items.isEmpty()) { + // Just return first matching Item. Tests should ensure name/title is unique. + return items.get(0); + } else { + fail("Could not find expected Item with dc.title = '" + name + "'"); + return null; } - return importedItem; } public void performImportScript(String[] csv) throws Exception { diff --git a/dspace-api/src/test/java/org/dspace/app/itemexport/ItemExportCLIIT.java b/dspace-api/src/test/java/org/dspace/app/itemexport/ItemExportCLIIT.java index 6db37bdbcd05..af12cfd5538a 100644 --- a/dspace-api/src/test/java/org/dspace/app/itemexport/ItemExportCLIIT.java +++ b/dspace-api/src/test/java/org/dspace/app/itemexport/ItemExportCLIIT.java @@ -83,9 +83,9 @@ public void setUp() throws Exception { @After @Override public void destroy() throws Exception { - PathUtils.deleteDirectory(tempDir); + PathUtils.deleteOnExit(tempDir); for (Path path : Files.list(workDir).collect(Collectors.toList())) { - PathUtils.delete(path); + PathUtils.deleteOnExit(path); } super.destroy(); } diff --git a/dspace-api/src/test/java/org/dspace/app/itemimport/ItemImportCLIIT.java b/dspace-api/src/test/java/org/dspace/app/itemimport/ItemImportCLIIT.java index 423e7186e623..8430e8f949d0 100644 --- a/dspace-api/src/test/java/org/dspace/app/itemimport/ItemImportCLIIT.java +++ b/dspace-api/src/test/java/org/dspace/app/itemimport/ItemImportCLIIT.java @@ -92,9 +92,9 @@ public void setUp() throws Exception { @After @Override public void destroy() throws Exception { - PathUtils.deleteDirectory(tempDir); + PathUtils.deleteOnExit(tempDir); for (Path path : Files.list(workDir).collect(Collectors.toList())) { - PathUtils.delete(path); + PathUtils.deleteOnExit(path); } super.destroy(); } diff --git a/dspace-api/src/test/java/org/dspace/app/ldn/LDNMessageConsumerIT.java b/dspace-api/src/test/java/org/dspace/app/ldn/LDNMessageConsumerIT.java index 8e11c2731b37..6098ea83f5c5 100644 --- a/dspace-api/src/test/java/org/dspace/app/ldn/LDNMessageConsumerIT.java +++ b/dspace-api/src/test/java/org/dspace/app/ldn/LDNMessageConsumerIT.java @@ -144,8 +144,7 @@ public void testLDNMessageConsumerRequestReview() throws Exception { context.turnOffAuthorisationSystem(); NotifyServiceEntity notifyService = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name") .withDescription("service description") .withUrl("https://service.ldn.org/about") .withLdnUrl("https://service.ldn.org/inbox") @@ -217,8 +216,7 @@ public void testLDNMessageConsumerRequestReviewAutomatic() throws Exception { context.turnOffAuthorisationSystem(); NotifyServiceEntity notifyService = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name") .withDescription("service description") .withUrl("https://service.ldn.org/about") .withLdnUrl("https://service.ldn.org/inbox") @@ -294,8 +292,7 @@ public void testLDNMessageConsumerRequestEndorsement() throws Exception { context.turnOffAuthorisationSystem(); NotifyServiceEntity notifyService = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name") .withDescription("service description") .withUrl("https://service.ldn.org/about") .withLdnUrl("https://service.ldn.org/inbox") @@ -366,8 +363,7 @@ public void testLDNMessageConsumerRequestIngest() throws Exception { context.turnOffAuthorisationSystem(); NotifyServiceEntity notifyService = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name") .withDescription("service description") .withUrl("https://service.ldn.org/about") .withLdnUrl("https://service.ldn.org/inbox") @@ -438,8 +434,7 @@ public void testLDNMessageConsumerRequestFake() throws Exception { context.turnOffAuthorisationSystem(); NotifyServiceEntity notifyService = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name") .withDescription("service description") .withUrl("https://service.ldn.org/about") .withLdnUrl("https://service.ldn.org/inbox") diff --git a/dspace-api/src/test/java/org/dspace/app/ldn/action/SendLDNMessageActionIT.java b/dspace-api/src/test/java/org/dspace/app/ldn/action/SendLDNMessageActionIT.java index c80d49a392af..cda39ef7d30e 100644 --- a/dspace-api/src/test/java/org/dspace/app/ldn/action/SendLDNMessageActionIT.java +++ b/dspace-api/src/test/java/org/dspace/app/ldn/action/SendLDNMessageActionIT.java @@ -158,8 +158,7 @@ public void testLDNMessageConsumerRequestReview() throws Exception { context.turnOffAuthorisationSystem(); NotifyServiceEntity notifyService = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name") .withDescription("service description") .withUrl("https://www.notify-inbox.info/") .withLdnUrl("https://notify-inbox.info/inbox/") @@ -210,8 +209,7 @@ public void testLDNMessageConsumerRequestReviewGotRedirection() throws Exception // ldnUrl should be https://notify-inbox.info/inbox/ // but used https://notify-inbox.info/inbox for redirection NotifyServiceEntity notifyService = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name") .withDescription("service description") .withUrl("https://www.notify-inbox.info/") .withLdnUrl("https://notify-inbox.info/inbox") @@ -259,8 +257,7 @@ public void testLDNMessageConsumerRequestReviewWithInvalidLdnUrl() throws Except context.turnOffAuthorisationSystem(); NotifyServiceEntity notifyService = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name") .withDescription("service description") .withUrl("https://www.notify-inbox.info/") .withLdnUrl("https://notify-inbox.info/invalidLdnUrl/") diff --git a/dspace-api/src/test/java/org/dspace/app/packager/PackagerIT.java b/dspace-api/src/test/java/org/dspace/app/packager/PackagerIT.java index 7d808ab8715c..2cddbb511f91 100644 --- a/dspace-api/src/test/java/org/dspace/app/packager/PackagerIT.java +++ b/dspace-api/src/test/java/org/dspace/app/packager/PackagerIT.java @@ -159,7 +159,7 @@ public void packagerUUIDAlreadyExistWithoutForceTest() throws Exception { performExportScript(article.getHandle(), tempFile); UUID id = article.getID(); itemService.delete(context, article); - WorkspaceItem workspaceItem = workspaceItemService.create(context, col1, id, false); + WorkspaceItem workspaceItem = workspaceItemService.create(context, col1, id, false, false); installItemService.installItem(context, workspaceItem, "123456789/0100"); performImportNoForceScript(tempFile); Iterator items = itemService.findByCollection(context, col1); diff --git a/dspace-api/src/test/java/org/dspace/app/requestitem/JavaMailTestTransport.java b/dspace-api/src/test/java/org/dspace/app/requestitem/JavaMailTestTransport.java index 96cf00c312ba..f6fbfe02f376 100644 --- a/dspace-api/src/test/java/org/dspace/app/requestitem/JavaMailTestTransport.java +++ b/dspace-api/src/test/java/org/dspace/app/requestitem/JavaMailTestTransport.java @@ -7,12 +7,12 @@ */ package org.dspace.app.requestitem; -import javax.mail.Address; -import javax.mail.Message; -import javax.mail.MessagingException; -import javax.mail.Session; -import javax.mail.Transport; -import javax.mail.URLName; +import jakarta.mail.Address; +import jakarta.mail.Message; +import jakarta.mail.MessagingException; +import jakarta.mail.Session; +import jakarta.mail.Transport; +import jakarta.mail.URLName; /** * A dummy load for SMTP transport, which saves the last message "sent" for diff --git a/dspace-api/src/test/java/org/dspace/app/requestitem/RequestItemEmailNotifierTest.java b/dspace-api/src/test/java/org/dspace/app/requestitem/RequestItemEmailNotifierTest.java index 713e007c58a2..eb3bf68b8942 100644 --- a/dspace-api/src/test/java/org/dspace/app/requestitem/RequestItemEmailNotifierTest.java +++ b/dspace-api/src/test/java/org/dspace/app/requestitem/RequestItemEmailNotifierTest.java @@ -12,12 +12,11 @@ import static org.hamcrest.Matchers.instanceOf; import static org.junit.Assert.assertEquals; -import javax.mail.Address; -import javax.mail.Message; -import javax.mail.Provider; -import javax.mail.Session; -import javax.mail.internet.InternetAddress; - +import jakarta.mail.Address; +import jakarta.mail.Message; +import jakarta.mail.Provider; +import jakarta.mail.Session; +import jakarta.mail.internet.InternetAddress; import org.dspace.AbstractUnitTest; import org.dspace.app.requestitem.factory.RequestItemServiceFactory; import org.dspace.app.requestitem.service.RequestItemService; @@ -34,6 +33,7 @@ import org.dspace.handle.service.HandleService; import org.dspace.services.ConfigurationService; import org.dspace.services.factory.DSpaceServicesFactory; +import org.junit.AfterClass; import org.junit.BeforeClass; import org.junit.Ignore; import org.junit.Test; @@ -78,6 +78,13 @@ public static void setUpClass() { = RequestItemServiceFactory.getInstance().getRequestItemService(); } + @AfterClass + public static void tearDownClass() throws Exception { + // AbstractUnitTest doesn't do this for us. + AbstractBuilder.cleanupObjects(); + AbstractBuilder.destroy(); + } + /** * Test of sendRequest method, of class RequestItemEmailNotifier. * @throws java.lang.Exception passed through. diff --git a/dspace-api/src/test/java/org/dspace/app/requestitem/RequestItemHelpdeskStrategyTest.java b/dspace-api/src/test/java/org/dspace/app/requestitem/RequestItemHelpdeskStrategyTest.java index b03d7576f991..816756f9d556 100644 --- a/dspace-api/src/test/java/org/dspace/app/requestitem/RequestItemHelpdeskStrategyTest.java +++ b/dspace-api/src/test/java/org/dspace/app/requestitem/RequestItemHelpdeskStrategyTest.java @@ -67,8 +67,10 @@ public static void setUpClass() } @AfterClass - public static void tearDownClass() { - AbstractBuilder.destroy(); // AbstractUnitTest doesn't do this for us. + public static void tearDownClass() throws Exception { + // AbstractUnitTest doesn't do this for us. + AbstractBuilder.cleanupObjects(); + AbstractBuilder.destroy(); } @Before diff --git a/dspace-api/src/test/java/org/dspace/app/requestitem/RequestItemSubmitterStrategyTest.java b/dspace-api/src/test/java/org/dspace/app/requestitem/RequestItemSubmitterStrategyTest.java index f485a591b079..964b3fe303f9 100644 --- a/dspace-api/src/test/java/org/dspace/app/requestitem/RequestItemSubmitterStrategyTest.java +++ b/dspace-api/src/test/java/org/dspace/app/requestitem/RequestItemSubmitterStrategyTest.java @@ -56,8 +56,10 @@ public static void setUpClass() } @AfterClass - public static void tearDownClass() { - AbstractBuilder.destroy(); // AbstractUnitTest doesn't do this for us. + public static void tearDownClass() throws Exception { + // AbstractUnitTest doesn't do this for us. + AbstractBuilder.cleanupObjects(); + AbstractBuilder.destroy(); } @Before diff --git a/dspace-api/src/test/java/org/dspace/app/sherpa/SHERPADataProviderTest.java b/dspace-api/src/test/java/org/dspace/app/sherpa/SHERPADataProviderTest.java index 6b9666c83038..cbea55ea0787 100644 --- a/dspace-api/src/test/java/org/dspace/app/sherpa/SHERPADataProviderTest.java +++ b/dspace-api/src/test/java/org/dspace/app/sherpa/SHERPADataProviderTest.java @@ -8,6 +8,7 @@ package org.dspace.app.sherpa; import static org.junit.Assert.assertEquals; +import static org.junit.Assert.assertNotEquals; import static org.junit.Assert.assertNotNull; import static org.junit.Assert.assertTrue; @@ -352,4 +353,88 @@ public void testSearchPublisherExternalObjects() { // Does dc.identifier.other match the expected value? assertEquals("Publisher URL must equal " + validUrl, validUrl, url); } + + /** + * Perform the same essential test as prior, but making sure the new comparator and equals methods + * in MetadataValueDTO and ExternalDataObject properly compare objects (even when DTO values are not strictly + * in the same order) + * The provider is configured to use the Mock SHERPAService. + */ + @Test + public void testComparePublisherExternalObjects() { + // Get a response with a single valid ISSN, using the mock service which will return a response based on + // thelancet.json stored response in test resources + // We expect to see the following values set correctly: + // dc.title = Public Library of Science + // dc.identifier.sherpaPublisher 112 + // dc.identifier.other http://www.plos.org/ + + // Set expected values + String validName = "Public Library of Science"; + String validIdentifier = "112"; + String validUrl = "http://www.plos.org/"; + + // First exemplar object should be identical + ExternalDataObject exemplarDataObject = new ExternalDataObject(); + exemplarDataObject.setSource("sherpaPublisher"); + exemplarDataObject.setId(validIdentifier); + exemplarDataObject.setValue(validName); + exemplarDataObject.setDisplayValue(validName); + exemplarDataObject.addMetadata(new MetadataValueDTO("dc", "title", null, null, + validName)); + exemplarDataObject.addMetadata(new MetadataValueDTO("dc", "identifier", "sherpaPublisher", null, + validIdentifier)); + exemplarDataObject.addMetadata(new MetadataValueDTO("dc", "identifier", "other", null, + validUrl)); + + // Exemplar object 2 has a different order of metadata values + // (we still expect it to be 'equal' when comparing since there is no concept of place for DTOs) + ExternalDataObject exemplarDataObject2 = new ExternalDataObject(); + exemplarDataObject2.setSource("sherpaPublisher"); + exemplarDataObject2.setId(validIdentifier); + exemplarDataObject2.setValue(validName); + exemplarDataObject2.setDisplayValue(validName); + exemplarDataObject2.addMetadata(new MetadataValueDTO("dc", "identifier", "other", null, + validUrl)); + exemplarDataObject2.addMetadata(new MetadataValueDTO("dc", "title", null, null, + validName)); + exemplarDataObject2.addMetadata(new MetadataValueDTO("dc", "identifier", "sherpaPublisher", null, + validIdentifier)); + + // Nonequal object should NOT evaluate as equal to our data + ExternalDataObject nonEqualObject = new ExternalDataObject(); + nonEqualObject.setSource("sherpaPublisher"); + nonEqualObject.setId(validIdentifier); + nonEqualObject.setValue(validName); + nonEqualObject.setDisplayValue(validName); + nonEqualObject.addMetadata(new MetadataValueDTO("dc", "title", null, null, + "Private Library of Science")); + nonEqualObject.addMetadata(new MetadataValueDTO("dc", "identifier", "sherpaPublisher", null, + validIdentifier)); + nonEqualObject.addMetadata(new MetadataValueDTO("dc", "identifier", "other", null, + validUrl)); + + + // Retrieve the dataobject(s) from the data provider + List externalDataObjects = + sherpaPublisherProvider.searchExternalDataObjects(validName, 0, 1); + + // Assert that the response is valid and not empty + assertTrue("Couldn't find a data object for publication name " + validName, + externalDataObjects != null && !externalDataObjects.isEmpty()); + + ExternalDataObject dataObject = externalDataObjects.get(0); + + // Assert that the data object itself is not null + assertNotNull("External data object must not be null", dataObject); + + // Assert equality to the exemplar object + assertEquals(exemplarDataObject, dataObject); + + // Assert equality to the 2nd exemplar object + assertEquals(exemplarDataObject2, dataObject); + + // Assert NON-equality to the 3rd object + assertNotEquals(nonEqualObject, dataObject); + } } \ No newline at end of file diff --git a/dspace-api/src/test/java/org/dspace/app/solrdatabaseresync/SolrDatabaseResyncIT.java b/dspace-api/src/test/java/org/dspace/app/solrdatabaseresync/SolrDatabaseResyncIT.java index 4fa881257e0f..d1fa0db9089b 100644 --- a/dspace-api/src/test/java/org/dspace/app/solrdatabaseresync/SolrDatabaseResyncIT.java +++ b/dspace-api/src/test/java/org/dspace/app/solrdatabaseresync/SolrDatabaseResyncIT.java @@ -35,6 +35,9 @@ import org.junit.Before; import org.junit.Test; +/** + * IT for {@link org.dspace.app.solrdatabaseresync.SolrDatabaseResyncIT} + */ public class SolrDatabaseResyncIT extends AbstractIntegrationTestWithDatabase { private final ConfigurationService configurationService = @@ -48,11 +51,21 @@ public class SolrDatabaseResyncIT extends AbstractIntegrationTestWithDatabase { private Collection col; private Item item1; private Item item2; + private Item item3; + private Item item4; + private Item item5; + private Item item6; + private Item item7; + private Item item8; + private Item item9; + private Item item10; + private Item item11; @Before public void setUp() throws Exception { super.setUp(); configurationService.setProperty("solr-database-resync.time-until-reindex", 1); + configurationService.setProperty("script.solr-database-resync.batch-size", 5); ServiceManager serviceManager = DSpaceServicesFactory.getInstance().getServiceManager(); searchService = serviceManager.getServiceByName(null, MockSolrSearchCore.class); @@ -75,6 +88,16 @@ public void setUp() throws Exception { .withSubject("TestingForMore") .build(); + item3 = ItemBuilder.createItem(context, col).withTitle("Public item 3").build(); + item4 = ItemBuilder.createItem(context, col).withTitle("Public item 4").build(); + item5 = ItemBuilder.createItem(context, col).withTitle("Public item 5").build(); + item6 = ItemBuilder.createItem(context, col).withTitle("Public item 6").build(); + item7 = ItemBuilder.createItem(context, col).withTitle("Public item 7").build(); + item8 = ItemBuilder.createItem(context, col).withTitle("Public item 8").build(); + item9 = ItemBuilder.createItem(context, col).withTitle("Public item 9").build(); + item10 = ItemBuilder.createItem(context, col).withTitle("Public item 10").build(); + item11 = ItemBuilder.createItem(context, col).withTitle("Public item 11").build(); + context.setDispatcher("noindex"); } @@ -83,12 +106,30 @@ public void solrPreDBStatusExistingItemTest() throws Exception { // Items were created, they should contain a predb status in solr assertHasPreDBStatus(item1); assertHasPreDBStatus(item2); + assertHasPreDBStatus(item3); + assertHasPreDBStatus(item4); + assertHasPreDBStatus(item5); + assertHasPreDBStatus(item6); + assertHasPreDBStatus(item7); + assertHasPreDBStatus(item8); + assertHasPreDBStatus(item9); + assertHasPreDBStatus(item10); + assertHasPreDBStatus(item11); performSolrDatabaseResyncScript(); // Database status script was performed, their predb status should be removed assertHasNoPreDBStatus(item1); assertHasNoPreDBStatus(item2); + assertHasNoPreDBStatus(item3); + assertHasNoPreDBStatus(item4); + assertHasNoPreDBStatus(item5); + assertHasNoPreDBStatus(item6); + assertHasNoPreDBStatus(item7); + assertHasNoPreDBStatus(item8); + assertHasNoPreDBStatus(item9); + assertHasNoPreDBStatus(item10); + assertHasNoPreDBStatus(item11); context.restoreAuthSystemState(); } @@ -98,22 +139,50 @@ public void solrPreDBStatusRemovedItemTest() throws Exception { // Items were created, they should contain a predb status in solr assertHasPreDBStatus(item1); assertHasPreDBStatus(item2); + assertHasPreDBStatus(item3); + assertHasPreDBStatus(item4); + assertHasPreDBStatus(item5); + assertHasPreDBStatus(item6); + assertHasPreDBStatus(item7); + assertHasPreDBStatus(item8); + assertHasPreDBStatus(item9); + assertHasPreDBStatus(item10); + assertHasPreDBStatus(item11); collectionService.delete(context, col); // Items were deleted, they should still contain a predb status in solr for now assertHasPreDBStatus(item1); assertHasPreDBStatus(item2); + assertHasPreDBStatus(item3); + assertHasPreDBStatus(item4); + assertHasPreDBStatus(item5); + assertHasPreDBStatus(item6); + assertHasPreDBStatus(item7); + assertHasPreDBStatus(item8); + assertHasPreDBStatus(item9); + assertHasPreDBStatus(item10); + assertHasPreDBStatus(item11); performSolrDatabaseResyncScript(); // Database status script was performed, their solr document should have been removed assertNoSolrDocument(item1); assertNoSolrDocument(item2); + assertNoSolrDocument(item3); + assertNoSolrDocument(item4); + assertNoSolrDocument(item5); + assertNoSolrDocument(item6); + assertNoSolrDocument(item7); + assertNoSolrDocument(item8); + assertNoSolrDocument(item9); + assertNoSolrDocument(item10); + assertNoSolrDocument(item11); context.restoreAuthSystemState(); } + public void assertHasNoPreDBStatus(Item item) throws Exception { assertNotEquals(STATUS_FIELD_PREDB, getStatus(item)); } diff --git a/dspace-api/src/test/java/org/dspace/app/suggestion/SuggestionUtilsIT.java b/dspace-api/src/test/java/org/dspace/app/suggestion/SuggestionUtilsIT.java index dd9c0d8f5f76..98abfdb7d02e 100644 --- a/dspace-api/src/test/java/org/dspace/app/suggestion/SuggestionUtilsIT.java +++ b/dspace-api/src/test/java/org/dspace/app/suggestion/SuggestionUtilsIT.java @@ -24,9 +24,9 @@ import java.util.HashMap; import java.util.List; import java.util.Optional; -import javax.xml.bind.JAXBContext; -import javax.xml.bind.Unmarshaller; +import jakarta.xml.bind.JAXBContext; +import jakarta.xml.bind.Unmarshaller; import org.apache.commons.collections.CollectionUtils; import org.dspace.AbstractIntegrationTestWithDatabase; import org.dspace.builder.CollectionBuilder; diff --git a/dspace-api/src/test/java/org/dspace/app/util/GoogleMetadataTest.java b/dspace-api/src/test/java/org/dspace/app/util/GoogleMetadataTest.java index c2543ca17b8c..9baf0fe3e963 100644 --- a/dspace-api/src/test/java/org/dspace/app/util/GoogleMetadataTest.java +++ b/dspace-api/src/test/java/org/dspace/app/util/GoogleMetadataTest.java @@ -125,19 +125,17 @@ public void testGetPDFURLDifferentMimeTypes() throws Exception { Bitstream b = bitstreamService.create( context, new ByteArrayInputStream("Bitstream 1".getBytes(StandardCharsets.UTF_8))); b.setName(context, "Word"); - b.setFormat(context, bitstreamFormatService.create(context)); - b.getFormat(context).setMIMEType("application/msword"); + b.setFormat(context, bitstreamFormatService.findByMIMEType(context, "application/msword")); bundleService.addBitstream(context, bundle, b); Bitstream b2 = bitstreamService.create( context, new ByteArrayInputStream("Bitstream 2".getBytes(StandardCharsets.UTF_8))); b2.setName(context, "Pdf"); - b2.setFormat(context, bitstreamFormatService.create(context)); - b2.getFormat(context).setMIMEType("application/pdf"); + b2.setFormat(context, bitstreamFormatService.findByMIMEType(context, "application/pdf")); bundleService.addBitstream(context, bundle, b2); Bitstream b3 = bitstreamService.create( context, new ByteArrayInputStream("Bitstream 3".getBytes(StandardCharsets.UTF_8))); b3.setName(context, "Rtf"); - b3.setFormat(context, bitstreamFormatService.create(context)); + b3.setFormat(context, bitstreamFormatService.findByMIMEType(context, "text/richtext")); b3.getFormat(context).setMIMEType("text/richtext"); bundleService.addBitstream(context, bundle, b3); context.restoreAuthSystemState(); @@ -160,20 +158,17 @@ public void testGetPDFURLSameMimeTypes() throws Exception { Bitstream b = bitstreamService.create( context, new ByteArrayInputStream("123456789".getBytes(StandardCharsets.UTF_8))); b.setName(context, "size9"); - b.setFormat(context, bitstreamFormatService.create(context)); - b.getFormat(context).setMIMEType("application/pdf"); + b.setFormat(context, bitstreamFormatService.findByMIMEType(context, "application/pdf")); bundleService.addBitstream(context, bundle, b); Bitstream b2 = bitstreamService.create( context, new ByteArrayInputStream("1".getBytes(StandardCharsets.UTF_8))); b2.setName(context, "size1"); - b2.setFormat(context, bitstreamFormatService.create(context)); - b2.getFormat(context).setMIMEType("application/pdf"); + b2.setFormat(context, bitstreamFormatService.findByMIMEType(context, "application/pdf")); bundleService.addBitstream(context, bundle, b2); Bitstream b3 = bitstreamService.create( context, new ByteArrayInputStream("12345".getBytes(StandardCharsets.UTF_8))); b3.setName(context, "size5"); - b3.setFormat(context, bitstreamFormatService.create(context)); - b3.getFormat(context).setMIMEType("text/richtext"); + b3.setFormat(context, bitstreamFormatService.findByMIMEType(context, "text/richtext")); bundleService.addBitstream(context, bundle, b3); context.restoreAuthSystemState(); context.commit(); @@ -195,20 +190,17 @@ public void testGetPDFURLSameMimeTypesSameSize() throws Exception { Bitstream b = bitstreamService.create( context, new ByteArrayInputStream("1".getBytes(StandardCharsets.UTF_8))); b.setName(context, "first"); - b.setFormat(context, bitstreamFormatService.create(context)); - b.getFormat(context).setMIMEType("application/pdf"); + b.setFormat(context, bitstreamFormatService.findByMIMEType(context, "application/pdf")); bundleService.addBitstream(context, bundle, b); Bitstream b2 = bitstreamService.create( context, new ByteArrayInputStream("1".getBytes(StandardCharsets.UTF_8))); b2.setName(context, "second"); - b2.setFormat(context, bitstreamFormatService.create(context)); - b2.getFormat(context).setMIMEType("application/pdf"); + b2.setFormat(context, bitstreamFormatService.findByMIMEType(context, "application/pdf")); bundleService.addBitstream(context, bundle, b2); Bitstream b3 = bitstreamService.create( context, new ByteArrayInputStream("1".getBytes(StandardCharsets.UTF_8))); b3.setName(context, "third"); - b3.setFormat(context, bitstreamFormatService.create(context)); - b3.getFormat(context).setMIMEType("application/pdf"); + b3.setFormat(context, bitstreamFormatService.findByMIMEType(context, "application/pdf")); bundleService.addBitstream(context, bundle, b3); context.restoreAuthSystemState(); context.commit(); @@ -230,20 +222,17 @@ public void testGetPDFURLWithPrimaryBitstream() throws Exception { Bitstream b = bitstreamService.create( context, new ByteArrayInputStream("Larger file than primary".getBytes(StandardCharsets.UTF_8))); b.setName(context, "first"); - b.setFormat(context, bitstreamFormatService.create(context)); - b.getFormat(context).setMIMEType("unknown"); + b.setFormat(context, bitstreamFormatService.findUnknown(context)); bundleService.addBitstream(context, bundle, b); Bitstream b2 = bitstreamService.create(context, new ByteArrayInputStream( "Bitstream with more prioritized mimetype than primary".getBytes(StandardCharsets.UTF_8))); b2.setName(context, "second"); - b2.setFormat(context, bitstreamFormatService.create(context)); - b2.getFormat(context).setMIMEType("application/pdf"); + b2.setFormat(context, bitstreamFormatService.findByMIMEType(context, "application/pdf")); bundleService.addBitstream(context, bundle, b2); Bitstream b3 = bitstreamService.create( context, new ByteArrayInputStream("1".getBytes(StandardCharsets.UTF_8))); b3.setName(context, "primary"); - b3.setFormat(context, bitstreamFormatService.create(context)); - b3.getFormat(context).setMIMEType("Primary"); + b3.setFormat(context, bitstreamFormatService.findByMIMEType(context, "text/richtext")); bundleService.addBitstream(context, bundle, b3); bundle.setPrimaryBitstreamID(b3); context.restoreAuthSystemState(); @@ -267,20 +256,17 @@ public void testGetPDFURLWithUndefinedMimeTypes() throws Exception { Bitstream b = bitstreamService.create( context, new ByteArrayInputStream("12".getBytes(StandardCharsets.UTF_8))); b.setName(context, "small"); - b.setFormat(context, bitstreamFormatService.create(context)); - b.getFormat(context).setMIMEType("unknown type 1"); + b.setFormat(context, bitstreamFormatService.findUnknown(context)); bundleService.addBitstream(context, bundle, b); Bitstream b2 = bitstreamService.create( context, new ByteArrayInputStream("12121212".getBytes(StandardCharsets.UTF_8))); b2.setName(context, "medium"); - b2.setFormat(context, bitstreamFormatService.create(context)); - b2.getFormat(context).setMIMEType("unknown type 2"); + b2.setFormat(context, bitstreamFormatService.findUnknown(context)); bundleService.addBitstream(context, bundle, b2); Bitstream b3 = bitstreamService.create( context, new ByteArrayInputStream("12121212121212".getBytes(StandardCharsets.UTF_8))); b3.setName(context, "large"); - b3.setFormat(context, bitstreamFormatService.create(context)); - b3.getFormat(context).setMIMEType("unknown type 3"); + b3.setFormat(context, bitstreamFormatService.findUnknown(context)); bundleService.addBitstream(context, bundle, b3); context.restoreAuthSystemState(); context.commit(); @@ -328,18 +314,15 @@ public void testGetPDFURLWithEmptyBitstreams() throws Exception { Bitstream b = bitstreamService.create(context, new ByteArrayInputStream("".getBytes(StandardCharsets.UTF_8))); b.setName(context, "small"); - b.setFormat(context, bitstreamFormatService.create(context)); - b.getFormat(context).setMIMEType("unknown type 1"); + b.setFormat(context, bitstreamFormatService.findUnknown(context)); bundleService.addBitstream(context, bundle, b); Bitstream b2 = bitstreamService.create(context, new ByteArrayInputStream("".getBytes(StandardCharsets.UTF_8))); b2.setName(context, "medium"); - b2.setFormat(context, bitstreamFormatService.create(context)); - b2.getFormat(context).setMIMEType("unknown type 2"); + b2.setFormat(context, bitstreamFormatService.findUnknown(context)); bundleService.addBitstream(context, bundle, b2); Bitstream b3 = bitstreamService.create(context, new ByteArrayInputStream("".getBytes(StandardCharsets.UTF_8))); b3.setName(context, "large"); - b3.setFormat(context, bitstreamFormatService.create(context)); - b3.getFormat(context).setMIMEType("unknown type 3"); + b3.setFormat(context, bitstreamFormatService.findUnknown(context)); bundleService.addBitstream(context, bundle, b3); context.restoreAuthSystemState(); context.commit(); @@ -361,8 +344,7 @@ public void testGetPdfUrlOfEmbargoed() throws Exception { Bitstream b = bitstreamService.create( context, new ByteArrayInputStream("Larger file than primary".getBytes(StandardCharsets.UTF_8))); b.setName(context, "first"); - b.setFormat(context, bitstreamFormatService.create(context)); - b.getFormat(context).setMIMEType("unknown"); + b.setFormat(context, bitstreamFormatService.findUnknown(context)); bundleService.addBitstream(context, bundle, b); // Set 3 month embargo on pdf Period period = Period.ofMonths(3); diff --git a/dspace-api/src/test/java/org/dspace/app/util/SubmissionConfigIT.java b/dspace-api/src/test/java/org/dspace/app/util/SubmissionConfigIT.java index 0db4926d2283..73d4434abf5f 100644 --- a/dspace-api/src/test/java/org/dspace/app/util/SubmissionConfigIT.java +++ b/dspace-api/src/test/java/org/dspace/app/util/SubmissionConfigIT.java @@ -51,6 +51,12 @@ public void testSubmissionMapByCommunityHandleSubmissionConfig() // col3 should use the item submission form directly mapped for this collection Collection col3 = CollectionBuilder.createCollection(context, subcom1, "123456789/collection-test") .withName("Collection 3") + .withEntityType("CustomEntityType") + .build(); + // col4 should use the item submission form mapped for the entity type CustomEntityType + Collection col4 = CollectionBuilder.createCollection(context, subcom1, "123456789/not-mapped4") + .withName("Collection 4") + .withEntityType("CustomEntityType") .build(); context.restoreAuthSystemState(); @@ -69,5 +75,8 @@ public void testSubmissionMapByCommunityHandleSubmissionConfig() SubmissionConfig submissionConfig3 = submissionConfigService.getSubmissionConfigByCollection(col3); assertEquals("collectiontest", submissionConfig3.getSubmissionName()); + // for col4, it should return the item submission form defined for the entitytype CustomEntityType + SubmissionConfig submissionConfig4 = submissionConfigService.getSubmissionConfigByCollection(col4); + assertEquals("entitytypetest", submissionConfig4.getSubmissionName()); } } diff --git a/dspace-api/src/test/java/org/dspace/builder/AbstractBuilder.java b/dspace-api/src/test/java/org/dspace/builder/AbstractBuilder.java index 543c0f26e747..219377551aa5 100644 --- a/dspace-api/src/test/java/org/dspace/builder/AbstractBuilder.java +++ b/dspace-api/src/test/java/org/dspace/builder/AbstractBuilder.java @@ -56,6 +56,8 @@ import org.dspace.externalservices.scopus.factory.CrisMetricsServiceFactory; import org.dspace.harvest.factory.HarvestServiceFactory; import org.dspace.harvest.service.HarvestedCollectionService; +import org.dspace.identifier.factory.IdentifierServiceFactory; +import org.dspace.identifier.service.DOIService; import org.dspace.layout.factory.CrisLayoutServiceFactory; import org.dspace.layout.service.CrisLayoutBoxService; import org.dspace.layout.service.CrisLayoutFieldService; @@ -135,6 +137,7 @@ public abstract class AbstractBuilder { static SubscribeService subscribeService; static RequestItemService requestItemService; static VersioningService versioningService; + static DOIService doiService; static OrcidHistoryService orcidHistoryService; static OrcidQueueService orcidQueueService; static OrcidTokenService orcidTokenService; @@ -197,6 +200,7 @@ public static void init() { requestItemService = RequestItemServiceFactory.getInstance().getRequestItemService(); versioningService = DSpaceServicesFactory.getInstance().getServiceManager() .getServiceByName(VersioningService.class.getName(), VersioningService.class); + doiService = IdentifierServiceFactory.getInstance().getDOIService(); // Temporarily disabled claimedTaskService = XmlWorkflowServiceFactory.getInstance().getClaimedTaskService(); @@ -271,6 +275,7 @@ public static void destroy() { harvestedCollectionService = null; requestItemService = null; versioningService = null; + doiService = null; orcidTokenService = null; notifyService = null; inboundPatternService = null; diff --git a/dspace-api/src/test/java/org/dspace/builder/BitstreamBuilder.java b/dspace-api/src/test/java/org/dspace/builder/BitstreamBuilder.java index 7285f6daa257..dba71faee554 100644 --- a/dspace-api/src/test/java/org/dspace/builder/BitstreamBuilder.java +++ b/dspace-api/src/test/java/org/dspace/builder/BitstreamBuilder.java @@ -183,17 +183,11 @@ public BitstreamBuilder guessFormat() throws SQLException { } public BitstreamBuilder withFormat(String format) throws SQLException { - - bitstreamService.addMetadata(context, bitstream, "dc", "format", null, null, format); - - return this; + return withMetadata("dc", "format", null, null, format); } public BitstreamBuilder withProvenance(String provenance) throws SQLException { - - bitstreamService.addMetadata(context, bitstream, "dc", "description", "provenance", null, provenance); - - return this; + return withMetadata("dc", "description", "provenance", null, provenance); } public BitstreamBuilder withType(String type) throws SQLException { @@ -209,22 +203,24 @@ public BitstreamBuilder withIIIFDisabled() throws SQLException { } public BitstreamBuilder withIIIFLabel(String label) throws SQLException { - bitstreamService.addMetadata(context, bitstream, "iiif", "label", null, null, label); - return this; + return withMetadata("iiif", "label", null, null, label); } public BitstreamBuilder withIIIFCanvasWidth(int i) throws SQLException { - bitstreamService.addMetadata(context, bitstream, "iiif", "image", "width", null, String.valueOf(i)); - return this; + return withMetadata("iiif", "image", "width", null, String.valueOf(i)); } public BitstreamBuilder withIIIFCanvasHeight(int i) throws SQLException { - bitstreamService.addMetadata(context, bitstream, "iiif", "image", "height", null, String.valueOf(i)); - return this; + return withMetadata("iiif", "image", "height", null, String.valueOf(i)); } public BitstreamBuilder withIIIFToC(String toc) throws SQLException { - bitstreamService.addMetadata(context, bitstream, "iiif", "toc", null, null, toc); + return withMetadata("iiif", "toc", null, null, toc); + } + + public BitstreamBuilder withMetadata(String schema, String element, String qualifier, String lang, String value) + throws SQLException { + bitstreamService.addMetadata(context, bitstream, schema, element, qualifier, lang, value); return this; } diff --git a/dspace-api/src/test/java/org/dspace/builder/CollectionBuilder.java b/dspace-api/src/test/java/org/dspace/builder/CollectionBuilder.java index 2fee83afa924..bdf56370d92f 100644 --- a/dspace-api/src/test/java/org/dspace/builder/CollectionBuilder.java +++ b/dspace-api/src/test/java/org/dspace/builder/CollectionBuilder.java @@ -289,8 +289,7 @@ public CollectionBuilder withSharedWorkspace() { public CollectionBuilder withDefaultItemRead(Group group) throws SQLException, AuthorizeException { resourcePolicyService.removePolicies(context, collection, DEFAULT_ITEM_READ); - ResourcePolicy resourcePolicy = resourcePolicyService.create(context); - resourcePolicy.setGroup(group); + ResourcePolicy resourcePolicy = resourcePolicyService.create(context, null, group); resourcePolicy.setAction(DEFAULT_ITEM_READ); resourcePolicy.setdSpaceObject(collection); resourcePolicyService.update(context, resourcePolicy); diff --git a/dspace-api/src/test/java/org/dspace/builder/DOIBuilder.java b/dspace-api/src/test/java/org/dspace/builder/DOIBuilder.java new file mode 100644 index 000000000000..cbfcd798c323 --- /dev/null +++ b/dspace-api/src/test/java/org/dspace/builder/DOIBuilder.java @@ -0,0 +1,90 @@ +/** + * The contents of this file are subject to the license and copyright + * detailed in the LICENSE and NOTICE files at the root of the source + * tree and available online at + * + * http://www.dspace.org/license/ + */ +package org.dspace.builder; + +import java.sql.SQLException; + +import org.dspace.authorize.AuthorizeException; +import org.dspace.content.DSpaceObject; +import org.dspace.core.Context; +import org.dspace.identifier.DOI; +import org.dspace.identifier.service.DOIService; + +/** + * Builder for {@link DOI} entities. + */ +public class DOIBuilder extends AbstractBuilder { + + private DOI doi; + + protected DOIBuilder(Context context) { + super(context); + } + + public static DOIBuilder createDOI(final Context context) { + DOIBuilder builder = new DOIBuilder(context); + return builder.create(context); + } + + private DOIBuilder create(final Context context) { + try { + this.doi = doiService.create(context); + } catch (SQLException e) { + throw new RuntimeException(e); + } + return this; + } + + public DOIBuilder withDoi(final String doi) { + this.doi.setDoi(doi); + return this; + } + + public DOIBuilder withDSpaceObject(final DSpaceObject dSpaceObject) { + this.doi.setDSpaceObject(dSpaceObject); + return this; + } + + public DOIBuilder withStatus(final Integer status) { + this.doi.setStatus(status); + return this; + } + + @Override + public DOI build() throws SQLException, AuthorizeException { + return this.doi; + } + + @Override + public void delete(Context c, DOI doi) throws Exception { + try { + doiService.delete(c, doi); + } catch (SQLException e) { + throw new RuntimeException(e); + } + } + + @Override + public void cleanup() throws Exception { + try (Context context = new Context()) { + context.setDispatcher("noindex"); + context.turnOffAuthorisationSystem(); + this.doi = context.reloadEntity(this.doi); + if (this.doi != null) { + delete(context, this.doi); + context.complete(); + } + } + } + + @Override + protected DOIService getService() { + return doiService; + } + +} diff --git a/dspace-api/src/test/java/org/dspace/builder/NotifyServiceBuilder.java b/dspace-api/src/test/java/org/dspace/builder/NotifyServiceBuilder.java index 9c8de62d8bcc..44cf0be09215 100644 --- a/dspace-api/src/test/java/org/dspace/builder/NotifyServiceBuilder.java +++ b/dspace-api/src/test/java/org/dspace/builder/NotifyServiceBuilder.java @@ -88,16 +88,16 @@ public void delete(NotifyServiceEntity notifyServiceEntity) throws Exception { indexingService.commit(); } - public static NotifyServiceBuilder createNotifyServiceBuilder(Context context) { + public static NotifyServiceBuilder createNotifyServiceBuilder(Context context, String name) { NotifyServiceBuilder notifyServiceBuilder = new NotifyServiceBuilder(context); - return notifyServiceBuilder.create(context); + return notifyServiceBuilder.create(context, name); } - private NotifyServiceBuilder create(Context context) { + private NotifyServiceBuilder create(Context context, String name) { try { this.context = context; - this.notifyServiceEntity = notifyService.create(context); + this.notifyServiceEntity = notifyService.create(context, name); } catch (SQLException e) { log.warn("Failed to create the NotifyService", e); @@ -106,11 +106,6 @@ private NotifyServiceBuilder create(Context context) { return this; } - public NotifyServiceBuilder withName(String name) { - notifyServiceEntity.setName(name); - return this; - } - public NotifyServiceBuilder withDescription(String description) { notifyServiceEntity.setDescription(description); return this; @@ -126,6 +121,11 @@ public NotifyServiceBuilder withLdnUrl(String ldnUrl) { return this; } + public NotifyServiceBuilder withStatus(boolean enabled) { + notifyServiceEntity.setEnabled(enabled); + return this; + } + public NotifyServiceBuilder withScore(BigDecimal score) { notifyServiceEntity.setScore(score); return this; @@ -146,4 +146,20 @@ public NotifyServiceBuilder withUpperIp(String upperIp) { return this; } + /** + * Delete the Test NotifyServiceEntity referred to by the given ID + * @param id ID of NotifyServiceEntity to delete + * @throws SQLException if error occurs + */ + public static void deleteNotifyService(Integer id) throws SQLException { + try (Context c = new Context()) { + c.turnOffAuthorisationSystem(); + NotifyServiceEntity notifyServiceEntity = notifyService.find(c, id); + if (notifyServiceEntity != null) { + notifyService.delete(c, notifyServiceEntity); + } + c.complete(); + } + } + } \ No newline at end of file diff --git a/dspace-api/src/test/java/org/dspace/builder/RequestItemBuilder.java b/dspace-api/src/test/java/org/dspace/builder/RequestItemBuilder.java index 66e6245ff625..8481b17e1458 100644 --- a/dspace-api/src/test/java/org/dspace/builder/RequestItemBuilder.java +++ b/dspace-api/src/test/java/org/dspace/builder/RequestItemBuilder.java @@ -10,8 +10,8 @@ import java.sql.SQLException; import java.util.Date; -import javax.validation.constraints.NotNull; +import jakarta.validation.constraints.NotNull; import org.apache.logging.log4j.LogManager; import org.apache.logging.log4j.Logger; import org.dspace.app.requestitem.RequestItem; diff --git a/dspace-api/src/test/java/org/dspace/builder/ResourcePolicyBuilder.java b/dspace-api/src/test/java/org/dspace/builder/ResourcePolicyBuilder.java index 70b1f8d73daf..c3b1b658ee1c 100644 --- a/dspace-api/src/test/java/org/dspace/builder/ResourcePolicyBuilder.java +++ b/dspace-api/src/test/java/org/dspace/builder/ResourcePolicyBuilder.java @@ -110,31 +110,23 @@ public static void delete(Integer id) indexingService.commit(); } - public static ResourcePolicyBuilder createResourcePolicy(Context context) + public static ResourcePolicyBuilder createResourcePolicy(Context context, EPerson ePerson, + Group group) throws SQLException, AuthorizeException { ResourcePolicyBuilder resourcePolicyBuilder = new ResourcePolicyBuilder(context); - return resourcePolicyBuilder.create(context); + return resourcePolicyBuilder.create(context, ePerson, group); } - private ResourcePolicyBuilder create(Context context) + private ResourcePolicyBuilder create(Context context, final EPerson ePerson, + final Group epersonGroup) throws SQLException, AuthorizeException { this.context = context; - resourcePolicy = resourcePolicyService.create(context); + resourcePolicy = resourcePolicyService.create(context, ePerson, epersonGroup); return this; } - public ResourcePolicyBuilder withUser(EPerson ePerson) throws SQLException { - resourcePolicy.setEPerson(ePerson); - return this; - } - - public ResourcePolicyBuilder withGroup(Group epersonGroup) throws SQLException { - resourcePolicy.setGroup(epersonGroup); - return this; - } - public ResourcePolicyBuilder withAction(int action) throws SQLException { resourcePolicy.setAction(action); return this; diff --git a/dspace-api/src/test/java/org/dspace/builder/WorkspaceItemBuilder.java b/dspace-api/src/test/java/org/dspace/builder/WorkspaceItemBuilder.java index b2145e265bfe..693e9ba9dbe5 100644 --- a/dspace-api/src/test/java/org/dspace/builder/WorkspaceItemBuilder.java +++ b/dspace-api/src/test/java/org/dspace/builder/WorkspaceItemBuilder.java @@ -121,10 +121,12 @@ public void cleanup() throws Exception { delete(c, workspaceItem); } else { item = c.reloadEntity(item); - // check if the wsi has been pushed to the workflow - XmlWorkflowItem wfi = workflowItemService.findByItem(c, item); - if (wfi != null) { - workflowItemService.delete(c, wfi); + if (item != null) { + // check if the wsi has been pushed to the workflow + XmlWorkflowItem wfi = workflowItemService.findByItem(c, item); + if (wfi != null) { + workflowItemService.delete(c, wfi); + } } } item = c.reloadEntity(item); diff --git a/dspace-api/src/test/java/org/dspace/checker/dao/impl/ChecksumHistoryDAOImplTest.java b/dspace-api/src/test/java/org/dspace/checker/dao/impl/ChecksumHistoryDAOImplTest.java index d41537533b2f..5dcbc9097f84 100644 --- a/dspace-api/src/test/java/org/dspace/checker/dao/impl/ChecksumHistoryDAOImplTest.java +++ b/dspace-api/src/test/java/org/dspace/checker/dao/impl/ChecksumHistoryDAOImplTest.java @@ -15,8 +15,8 @@ import java.util.Calendar; import java.util.Date; import java.util.GregorianCalendar; -import javax.persistence.Query; +import jakarta.persistence.Query; import org.dspace.AbstractUnitTest; import org.dspace.checker.ChecksumResultCode; import org.dspace.content.Bitstream; @@ -123,7 +123,7 @@ public void testDeleteByDateAndCode() // See if matching old row is gone. qry = dbc.getSession().createQuery( - "SELECT COUNT(*) FROM ChecksumHistory WHERE process_end_date = :date"); + "SELECT COUNT(*) FROM ChecksumHistory WHERE processEndDate = :date"); long count; qry.setParameter("date", matchDate); diff --git a/dspace-api/src/test/java/org/dspace/content/BitstreamFormatTest.java b/dspace-api/src/test/java/org/dspace/content/BitstreamFormatTest.java index ff99a820b5b7..aa1952492b4a 100644 --- a/dspace-api/src/test/java/org/dspace/content/BitstreamFormatTest.java +++ b/dspace-api/src/test/java/org/dspace/content/BitstreamFormatTest.java @@ -222,6 +222,7 @@ public void testCreateAdmin() throws SQLException, AuthorizeException { assertThat("testCreate 3", found.getSupportLevel(), equalTo(-1)); assertFalse("testCreate 4", found.isInternal()); bitstreamFormatService.delete(context, found); + context.commit(); } /** @@ -497,6 +498,7 @@ public void testDeleteAdmin() throws SQLException, AuthorizeException { BitstreamFormat bitstreamFormat = bitstreamFormatService.create(context); int toDeleteIdentifier = bitstreamFormat.getID(); bitstreamFormatService.delete(context, bitstreamFormat); + context.commit(); BitstreamFormat b = bitstreamFormatService.find(context, toDeleteIdentifier); assertThat("testDeleteAdmin 0", b, nullValue()); } diff --git a/dspace-api/src/test/java/org/dspace/content/BundleTest.java b/dspace-api/src/test/java/org/dspace/content/BundleTest.java index 4af64b81cb0c..4b40043fc494 100644 --- a/dspace-api/src/test/java/org/dspace/content/BundleTest.java +++ b/dspace-api/src/test/java/org/dspace/content/BundleTest.java @@ -633,9 +633,9 @@ public void testInheritCollectionDefaultPolicies() throws AuthorizeException, SQ @Test public void testReplaceAllBitstreamPolicies() throws SQLException, AuthorizeException { List newpolicies = new ArrayList(); - newpolicies.add(resourcePolicyService.create(context)); - newpolicies.add(resourcePolicyService.create(context)); - newpolicies.add(resourcePolicyService.create(context)); + newpolicies.add(resourcePolicyService.create(context, eperson, null)); + newpolicies.add(resourcePolicyService.create(context, eperson, null)); + newpolicies.add(resourcePolicyService.create(context, eperson, null)); bundleService.replaceAllBitstreamPolicies(context, b, newpolicies); List bspolicies = bundleService.getBundlePolicies(context, b); diff --git a/dspace-api/src/test/java/org/dspace/content/DCDateTest.java b/dspace-api/src/test/java/org/dspace/content/DCDateTest.java index 9f534b5dcf98..c3c84990ae4e 100644 --- a/dspace-api/src/test/java/org/dspace/content/DCDateTest.java +++ b/dspace-api/src/test/java/org/dspace/content/DCDateTest.java @@ -281,6 +281,23 @@ public void testDCDateString() { assertThat("testDCDateString 10", dc.getHourUTC(), equalTo(0)); assertThat("testDCDateString 11", dc.getMinuteUTC(), equalTo(0)); assertThat("testDCDateString 12", dc.getSecondUTC(), equalTo(1)); + + // test additional ISO format + dc = new DCDate("2010-04-14T00:00:01.000"); + assertThat("testDCDateString 1", dc.getYear(), equalTo(2010)); + assertThat("testDCDateString 2", dc.getMonth(), equalTo(04)); + assertThat("testDCDateString 3", dc.getDay(), equalTo(13)); + assertThat("testDCDateString 4", dc.getHour(), equalTo(16)); + assertThat("testDCDateString 5", dc.getMinute(), equalTo(0)); + assertThat("testDCDateIntBits 6", dc.getSecond(), equalTo(1)); + + assertThat("testDCDateString 7", dc.getYearUTC(), equalTo(2010)); + assertThat("testDCDateString 8", dc.getMonthUTC(), equalTo(04)); + assertThat("testDCDateString 9", dc.getDayUTC(), equalTo(14)); + assertThat("testDCDateString 10", dc.getHourUTC(), equalTo(0)); + assertThat("testDCDateString 11", dc.getMinuteUTC(), equalTo(0)); + assertThat("testDCDateString 12", dc.getSecondUTC(), equalTo(1)); + } @@ -381,6 +398,11 @@ public void testDisplayDate() { assertThat("testDisplayDate 7 ", dc.displayDate(false, false, new Locale("en_GB")), equalTo("14-Apr-2010")); + + dc = new DCDate("2010-04-14T00:00:01.000"); + assertThat("testDisplayDate 8 ", dc.displayDate(false, false, + new Locale("en_GB")), + equalTo("14-Apr-2010")); } /** diff --git a/dspace-api/src/test/java/org/dspace/content/EntityServiceImplTest.java b/dspace-api/src/test/java/org/dspace/content/EntityServiceImplTest.java index 305ebff69710..11fbbb9f9119 100644 --- a/dspace-api/src/test/java/org/dspace/content/EntityServiceImplTest.java +++ b/dspace-api/src/test/java/org/dspace/content/EntityServiceImplTest.java @@ -145,6 +145,7 @@ public void testGetAllRelationshipTypes() throws Exception { // Declare objects utilized for this test Item item = mock(Item.class); Entity entity = mock(Entity.class); + EntityType entityType = mock(EntityType.class); RelationshipType relationshipType = mock(RelationshipType.class); relationshipType.setLeftType(leftType); relationshipType.setLeftType(rightType); @@ -156,7 +157,8 @@ public void testGetAllRelationshipTypes() throws Exception { // Mock the state of objects utilized in getAllRelationshipTypes() // to meet the success criteria of the invocation when(entity.getItem()).thenReturn(item); - when(relationshipTypeService.findByEntityType(context, entityService.getType(context, entity), -1, -1)) + when(entityService.getType(context, entity)).thenReturn(entityType); + when(relationshipTypeService.findByEntityType(context, entityType, -1, -1)) .thenReturn(relationshipTypeList); // The relation(s) reported from our mocked Entity should match our relationshipList @@ -181,10 +183,9 @@ public void testGetLeftRelationshipTypes() throws Exception { // Mock the state of objects utilized in getLeftRelationshipTypes() // to meet the success criteria of the invocation - when(itemService.getMetadata(item, "dspace", "entity", "type", Item.ANY, false)).thenReturn(metsList); when(entity.getItem()).thenReturn(item); when(entityService.getType(context, entity)).thenReturn(entityType); - when(relationshipTypeService.findByEntityType(context, entityService.getType(context, entity), true, -1, -1)) + when(relationshipTypeService.findByEntityType(context, entityType, true, -1, -1)) .thenReturn(relationshipTypeList); // The left relationshipType(s) reported from our mocked Entity should match our relationshipList @@ -209,10 +210,9 @@ public void testGetRightRelationshipTypes() throws Exception { // Mock the state of objects utilized in getRightRelationshipTypes() // to meet the success criteria of the invocation - when(itemService.getMetadata(item, "dspace", "entity", "type", Item.ANY, false)).thenReturn(metsList); when(entity.getItem()).thenReturn(item); when(entityService.getType(context, entity)).thenReturn(entityType); - when(relationshipTypeService.findByEntityType(context, entityService.getType(context, entity), false, -1, -1)) + when(relationshipTypeService.findByEntityType(context, entityType, false, -1, -1)) .thenReturn(relationshipTypeList); // The right relationshipType(s) reported from our mocked Entity should match our relationshipList diff --git a/dspace-api/src/test/java/org/dspace/content/ItemTest.java b/dspace-api/src/test/java/org/dspace/content/ItemTest.java index a9df8f22a423..263b2000c8a7 100644 --- a/dspace-api/src/test/java/org/dspace/content/ItemTest.java +++ b/dspace-api/src/test/java/org/dspace/content/ItemTest.java @@ -13,6 +13,8 @@ import static org.hamcrest.MatcherAssert.assertThat; import static org.junit.Assert.assertEquals; import static org.junit.Assert.assertFalse; +import static org.junit.Assert.assertNotNull; +import static org.junit.Assert.assertNull; import static org.junit.Assert.assertTrue; import static org.junit.Assert.fail; import static org.mockito.ArgumentMatchers.any; @@ -537,6 +539,17 @@ public void testAddMetadata_5args_1() throws SQLException { assertThat("testAddMetadata_5args_1 11", dc.get(1).getValue(), equalTo(values[1])); } + @Test(expected = IllegalArgumentException.class) + public void testAddMetadata_5args_no_values() throws Exception { + String schema = "dc"; + String element = "contributor"; + String qualifier = "author"; + String lang = Item.ANY; + String[] values = {}; + itemService.addMetadata(context, it, schema, element, qualifier, lang, Arrays.asList(values)); + fail("IllegalArgumentException expected"); + } + /** * Test of addMetadata method, of class Item. */ @@ -613,8 +626,66 @@ public void testAddMetadata_7args_1_noauthority() throws SQLException { assertThat("testAddMetadata_7args_1 15", dc.get(1).getConfidence(), equalTo(-1)); } + @Test(expected = IllegalArgumentException.class) + public void testAddMetadata_7args_no_values() throws Exception { + String schema = "dc"; + String element = "contributor"; + String qualifier = "author"; + String lang = Item.ANY; + List values = new ArrayList(); + List authorities = new ArrayList(); + List confidences = new ArrayList(); + itemService.addMetadata(context, it, schema, element, qualifier, lang, values, authorities, confidences); + fail("IllegalArgumentException expected"); + } + + @Test + public void testAddMetadata_list_with_virtual_metadata() throws Exception { + String schema = "dc"; + String element = "contributor"; + String qualifier = "author"; + String lang = Item.ANY; + // Create two fake virtual metadata ("virtual::[relationship-id]") values + List values = new ArrayList<>(Arrays.asList("uuid-1", "uuid-2")); + List authorities = new ArrayList<>(Arrays.asList(Constants.VIRTUAL_AUTHORITY_PREFIX + "relationship-1", + Constants.VIRTUAL_AUTHORITY_PREFIX + "relationship-2")); + List confidences = new ArrayList<>(Arrays.asList(-1, -1)); + + // Virtual metadata values will be IGNORED. No metadata should be added as we are calling addMetadata() + // with two virtual metadata values. + List valuesAdded = itemService.addMetadata(context, it, schema, element, qualifier, lang, + values, authorities, confidences); + assertNotNull(valuesAdded); + assertTrue(valuesAdded.isEmpty()); + + // Now, update tests values to append a third value which is NOT virtual metadata + String newValue = "new-metadata-value"; + String newAuthority = "auth0"; + Integer newConfidence = 0; + values.add(newValue); + authorities.add(newAuthority); + confidences.add(newConfidence); + + // Call addMetadata again, and this time only one value (the new, non-virtual metadata) should be added + valuesAdded = itemService.addMetadata(context, it, schema, element, qualifier, lang, + values, authorities, confidences); + assertNotNull(valuesAdded); + assertEquals(1, valuesAdded.size()); + + // Get metadata and ensure new value is the ONLY ONE for this metadata field + List dc = itemService.getMetadata(it, schema, element, qualifier, lang); + assertNotNull(dc); + assertEquals(1, dc.size()); + assertEquals(schema, dc.get(0).getMetadataField().getMetadataSchema().getName()); + assertEquals(element, dc.get(0).getMetadataField().getElement()); + assertEquals(qualifier, dc.get(0).getMetadataField().getQualifier()); + assertEquals(newValue, dc.get(0).getValue()); + assertNull(dc.get(0).getAuthority()); + assertEquals(-1, dc.get(0).getConfidence()); + } + /** - * Test of addMetadata method, of class Item. + * This is the same as testAddMetadata_5args_1 except it is adding a *single* value as a String, not a List. */ @Test public void testAddMetadata_5args_2() throws SQLException { @@ -622,24 +693,18 @@ public void testAddMetadata_5args_2() throws SQLException { String element = "contributor"; String qualifier = "author"; String lang = Item.ANY; - List values = Arrays.asList("value0", "value1"); - itemService.addMetadata(context, it, schema, element, qualifier, lang, values); + String value = "value0"; + itemService.addMetadata(context, it, schema, element, qualifier, lang, value); List dc = itemService.getMetadata(it, schema, element, qualifier, lang); assertThat("testAddMetadata_5args_2 0", dc, notNullValue()); - assertTrue("testAddMetadata_5args_2 1", dc.size() == 2); + assertTrue("testAddMetadata_5args_2 1", dc.size() == 1); assertThat("testAddMetadata_5args_2 2", dc.get(0).getMetadataField().getMetadataSchema().getName(), equalTo(schema)); assertThat("testAddMetadata_5args_2 3", dc.get(0).getMetadataField().getElement(), equalTo(element)); assertThat("testAddMetadata_5args_2 4", dc.get(0).getMetadataField().getQualifier(), equalTo(qualifier)); assertThat("testAddMetadata_5args_2 5", dc.get(0).getLanguage(), equalTo(lang)); - assertThat("testAddMetadata_5args_2 6", dc.get(0).getValue(), equalTo(values.get(0))); - assertThat("testAddMetadata_5args_2 7", dc.get(1).getMetadataField().getMetadataSchema().getName(), - equalTo(schema)); - assertThat("testAddMetadata_5args_2 8", dc.get(1).getMetadataField().getElement(), equalTo(element)); - assertThat("testAddMetadata_5args_2 9", dc.get(1).getMetadataField().getQualifier(), equalTo(qualifier)); - assertThat("testAddMetadata_5args_2 10", dc.get(1).getLanguage(), equalTo(lang)); - assertThat("testAddMetadata_5args_2 11", dc.get(1).getValue(), equalTo(values.get(1))); + assertThat("testAddMetadata_5args_2 6", dc.get(0).getValue(), equalTo(value)); } /** @@ -700,6 +765,42 @@ public void testAddMetadata_7args_2_noauthority() throws SQLException { assertThat("testAddMetadata_7args_2 8", dc.get(0).getConfidence(), equalTo(0)); } + @Test + public void testAddMetadata_single_virtual_metadata() throws Exception { + String schema = "dc"; + String element = "contributor"; + String qualifier = "author"; + String lang = Item.ANY; + // Create a single fake virtual metadata ("virtual::[relationship-id]") value + String value = "uuid-1"; + String authority = Constants.VIRTUAL_AUTHORITY_PREFIX + "relationship-1"; + Integer confidence = -1; + + // Virtual metadata values will be IGNORED. No metadata should be added as we are calling addMetadata() + // with a virtual metadata value. + MetadataValue valuesAdded = itemService.addMetadata(context, it, schema, element, qualifier, lang, + value, authority, confidence); + // Returned object will be null when no metadata was added + assertNull(valuesAdded); + + // Verify this metadata field does NOT exist on the item + List mv = itemService.getMetadata(it, schema, element, qualifier, lang); + assertNotNull(mv); + assertTrue(mv.isEmpty()); + + // Also try calling addMetadata() with MetadataField object + MetadataField metadataField = metadataFieldService.findByElement(context, schema, element, qualifier); + valuesAdded = itemService.addMetadata(context, it, metadataField, lang, value, authority, confidence); + // Returned object should still be null + assertNull(valuesAdded); + + // Verify this metadata field does NOT exist on the item + mv = itemService.getMetadata(it, schema, element, qualifier, lang); + assertNotNull(mv); + assertTrue(mv.isEmpty()); + } + + /** * Test of clearMetadata method, of class Item. */ @@ -1255,7 +1356,7 @@ public void testGetType() { @Test public void testReplaceAllItemPolicies() throws Exception { List newpolicies = new ArrayList(); - ResourcePolicy pol1 = resourcePolicyService.create(context); + ResourcePolicy pol1 = resourcePolicyService.create(context, eperson, null); newpolicies.add(pol1); itemService.replaceAllItemPolicies(context, it, newpolicies); @@ -1282,9 +1383,9 @@ public void testReplaceAllBitstreamPolicies() throws Exception { bundleService.addBitstream(context, created, result); List newpolicies = new ArrayList(); - newpolicies.add(resourcePolicyService.create(context)); - newpolicies.add(resourcePolicyService.create(context)); - newpolicies.add(resourcePolicyService.create(context)); + newpolicies.add(resourcePolicyService.create(context, eperson, null)); + newpolicies.add(resourcePolicyService.create(context, eperson, null)); + newpolicies.add(resourcePolicyService.create(context, eperson, null)); context.restoreAuthSystemState(); itemService.replaceAllBitstreamPolicies(context, it, newpolicies); @@ -1314,9 +1415,8 @@ public void testRemoveGroupPolicies() throws Exception { context.turnOffAuthorisationSystem(); List newpolicies = new ArrayList(); Group g = groupService.create(context); - ResourcePolicy pol1 = resourcePolicyService.create(context); + ResourcePolicy pol1 = resourcePolicyService.create(context, null, g); newpolicies.add(pol1); - pol1.setGroup(g); itemService.replaceAllItemPolicies(context, it, newpolicies); itemService.removeGroupPolicies(context, it, g); diff --git a/dspace-api/src/test/java/org/dspace/content/packager/ITDSpaceAIP.java b/dspace-api/src/test/java/org/dspace/content/packager/ITDSpaceAIP.java index 15e707385366..b06efaf66b93 100644 --- a/dspace-api/src/test/java/org/dspace/content/packager/ITDSpaceAIP.java +++ b/dspace-api/src/test/java/org/dspace/content/packager/ITDSpaceAIP.java @@ -388,9 +388,8 @@ public void testRestoreRestrictedCommunity() throws Exception { // Create a custom resource policy for this community List policies = new ArrayList<>(); - ResourcePolicy policy = resourcePolicyService.create(context); + ResourcePolicy policy = resourcePolicyService.create(context, null, group); policy.setRpName("Special Read Only"); - policy.setGroup(group); policy.setAction(Constants.READ); policies.add(policy); @@ -602,9 +601,8 @@ public void testRestoreRestrictedCollection() throws Exception { // Create a custom resource policy for this Collection List policies = new ArrayList<>(); - ResourcePolicy policy = resourcePolicyService.create(context); + ResourcePolicy policy = resourcePolicyService.create(context, null, group); policy.setRpName("Special Read Only"); - policy.setGroup(group); policy.setAction(Constants.READ); policies.add(policy); @@ -824,10 +822,9 @@ public void testRestoreRestrictedItem() throws Exception { // Create a custom resource policy for this Item List policies = new ArrayList<>(); - ResourcePolicy admin_policy = resourcePolicyService.create(context); - admin_policy.setRpName("Admin Read-Only"); Group adminGroup = groupService.findByName(context, Group.ADMIN); - admin_policy.setGroup(adminGroup); + ResourcePolicy admin_policy = resourcePolicyService.create(context, null, adminGroup); + admin_policy.setRpName("Admin Read-Only"); admin_policy.setAction(Constants.READ); policies.add(admin_policy); itemService.replaceAllItemPolicies(context, item, policies); diff --git a/dspace-api/src/test/java/org/dspace/content/service/ItemServiceIT.java b/dspace-api/src/test/java/org/dspace/content/service/ItemServiceIT.java index 0fdbfd027fd2..e50705642d97 100644 --- a/dspace-api/src/test/java/org/dspace/content/service/ItemServiceIT.java +++ b/dspace-api/src/test/java/org/dspace/content/service/ItemServiceIT.java @@ -713,8 +713,7 @@ public void testFindItemsWithEditNoRights() throws Exception { @Test public void testFindAndCountItemsWithEditEPerson() throws Exception { - ResourcePolicy rp = ResourcePolicyBuilder.createResourcePolicy(context) - .withUser(eperson) + ResourcePolicy rp = ResourcePolicyBuilder.createResourcePolicy(context, eperson, null) .withDspaceObject(item) .withAction(Constants.WRITE) .build(); @@ -727,8 +726,7 @@ public void testFindAndCountItemsWithEditEPerson() throws Exception { @Test public void testFindAndCountItemsWithAdminEPerson() throws Exception { - ResourcePolicy rp = ResourcePolicyBuilder.createResourcePolicy(context) - .withUser(eperson) + ResourcePolicy rp = ResourcePolicyBuilder.createResourcePolicy(context, eperson, null) .withDspaceObject(item) .withAction(Constants.ADMIN) .build(); @@ -747,8 +745,7 @@ public void testFindAndCountItemsWithEditGroup() throws Exception { .build(); context.restoreAuthSystemState(); - ResourcePolicy rp = ResourcePolicyBuilder.createResourcePolicy(context) - .withGroup(group) + ResourcePolicy rp = ResourcePolicyBuilder.createResourcePolicy(context, null, group) .withDspaceObject(item) .withAction(Constants.WRITE) .build(); @@ -767,8 +764,7 @@ public void testFindAndCountItemsWithAdminGroup() throws Exception { .build(); context.restoreAuthSystemState(); - ResourcePolicy rp = ResourcePolicyBuilder.createResourcePolicy(context) - .withGroup(group) + ResourcePolicy rp = ResourcePolicyBuilder.createResourcePolicy(context, null, group) .withDspaceObject(item) .withAction(Constants.ADMIN) .build(); diff --git a/dspace-api/src/test/java/org/dspace/discovery/DiscoveryIT.java b/dspace-api/src/test/java/org/dspace/discovery/DiscoveryIT.java index 55be531418ae..6bc79cad558b 100644 --- a/dspace-api/src/test/java/org/dspace/discovery/DiscoveryIT.java +++ b/dspace-api/src/test/java/org/dspace/discovery/DiscoveryIT.java @@ -19,8 +19,8 @@ import java.util.LinkedList; import java.util.List; import java.util.stream.Collectors; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.AbstractIntegrationTestWithDatabase; import org.dspace.app.launcher.ScriptLauncher; import org.dspace.app.scripts.handler.impl.TestDSpaceRunnableHandler; diff --git a/dspace-api/src/test/java/org/dspace/eperson/EPersonInWorkflowIT.java b/dspace-api/src/test/java/org/dspace/eperson/EPersonInWorkflowIT.java index 0aa549e8c829..5d7ed53fa0b0 100644 --- a/dspace-api/src/test/java/org/dspace/eperson/EPersonInWorkflowIT.java +++ b/dspace-api/src/test/java/org/dspace/eperson/EPersonInWorkflowIT.java @@ -15,8 +15,8 @@ import java.sql.SQLException; import java.util.List; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.apache.commons.lang3.StringUtils; import org.apache.logging.log4j.Logger; import org.dspace.AbstractIntegrationTestWithDatabase; diff --git a/dspace-api/src/test/java/org/dspace/eperson/EPersonTest.java b/dspace-api/src/test/java/org/dspace/eperson/EPersonTest.java index 3780afcf6393..4439e39e70b1 100644 --- a/dspace-api/src/test/java/org/dspace/eperson/EPersonTest.java +++ b/dspace-api/src/test/java/org/dspace/eperson/EPersonTest.java @@ -21,8 +21,8 @@ import java.util.Iterator; import java.util.List; import java.util.Set; -import javax.mail.MessagingException; +import jakarta.mail.MessagingException; import org.apache.commons.codec.DecoderException; import org.apache.commons.collections4.CollectionUtils; import org.apache.commons.lang3.StringUtils; diff --git a/dspace-api/src/test/java/org/dspace/external/MockOpenaireRestConnector.java b/dspace-api/src/test/java/org/dspace/external/MockOpenaireRestConnector.java index c67402dfdcc6..9e1362e2311f 100644 --- a/dspace-api/src/test/java/org/dspace/external/MockOpenaireRestConnector.java +++ b/dspace-api/src/test/java/org/dspace/external/MockOpenaireRestConnector.java @@ -8,7 +8,6 @@ package org.dspace.external; import java.io.InputStream; -import javax.xml.bind.JAXBException; import eu.openaire.jaxb.helper.OpenAIREHandler; import eu.openaire.jaxb.model.Response; @@ -30,7 +29,7 @@ public MockOpenaireRestConnector(String url) { public Response searchProjectByKeywords(int page, int size, String... keywords) { try { return OpenAIREHandler.unmarshal(this.getClass().getResourceAsStream("openaire-projects.xml")); - } catch (JAXBException e) { + } catch (Exception e) { e.printStackTrace(); } return null; @@ -40,7 +39,7 @@ public Response searchProjectByKeywords(int page, int size, String... keywords) public Response searchProjectByIDAndFunder(String projectID, String projectFunder, int page, int size) { try { return OpenAIREHandler.unmarshal(this.getClass().getResourceAsStream("openaire-project.xml")); - } catch (JAXBException e) { + } catch (Exception e) { e.printStackTrace(); } return null; @@ -50,7 +49,7 @@ public Response searchProjectByIDAndFunder(String projectID, String projectFunde public Response search(String path, int page, int size) { try { return OpenAIREHandler.unmarshal(this.getClass().getResourceAsStream("openaire-no-projects.xml")); - } catch (JAXBException e) { + } catch (Exception e) { e.printStackTrace(); } return null; diff --git a/dspace-api/src/test/java/org/dspace/external/provider/impl/OrcidPublicationDataProviderIT.java b/dspace-api/src/test/java/org/dspace/external/provider/impl/OrcidPublicationDataProviderIT.java index 1222c609d645..282208becc6b 100644 --- a/dspace-api/src/test/java/org/dspace/external/provider/impl/OrcidPublicationDataProviderIT.java +++ b/dspace-api/src/test/java/org/dspace/external/provider/impl/OrcidPublicationDataProviderIT.java @@ -27,9 +27,9 @@ import java.util.List; import java.util.Optional; import java.util.function.Predicate; -import javax.xml.bind.JAXBContext; -import javax.xml.bind.Unmarshaller; +import jakarta.xml.bind.JAXBContext; +import jakarta.xml.bind.Unmarshaller; import org.apache.commons.codec.binary.StringUtils; import org.dspace.AbstractIntegrationTestWithDatabase; import org.dspace.builder.CollectionBuilder; diff --git a/dspace-api/src/test/java/org/dspace/process/ProcessIT.java b/dspace-api/src/test/java/org/dspace/process/ProcessIT.java index d6640652121c..6cf840ea6abe 100644 --- a/dspace-api/src/test/java/org/dspace/process/ProcessIT.java +++ b/dspace-api/src/test/java/org/dspace/process/ProcessIT.java @@ -9,6 +9,7 @@ import static org.junit.Assert.assertFalse; import static org.junit.Assert.assertTrue; +import static org.junit.Assert.fail; import java.util.HashSet; import java.util.LinkedList; @@ -87,4 +88,14 @@ public void removeOneGroupTest() throws Exception { assertFalse(isPresent); } + + @Test + public void addProcessWithNullEPersonTest() throws Exception { + try { + ProcessBuilder.createProcess(context, null, "mock-script", new LinkedList<>(), + new HashSet<>()).build(); + } catch (NullPointerException e) { + fail("Should not have thrown NullPointerException"); + } + } } diff --git a/dspace-api/src/test/java/org/dspace/solr/MockSolrServer.java b/dspace-api/src/test/java/org/dspace/solr/MockSolrServer.java index aed0c088c362..094275743b34 100644 --- a/dspace-api/src/test/java/org/dspace/solr/MockSolrServer.java +++ b/dspace-api/src/test/java/org/dspace/solr/MockSolrServer.java @@ -47,10 +47,12 @@ public class MockSolrServer { private static final Logger log = LogManager.getLogger(); /** Shared embedded Solr connections, by name. */ - private static final ConcurrentMap loadedCores = new ConcurrentHashMap<>(); + private static final ConcurrentMap loadedCores + = new ConcurrentHashMap<>(); /** Reference counts for each core. */ - private static final ConcurrentMap usersPerCore = new ConcurrentHashMap<>(); + private static final ConcurrentMap usersPerCore + = new ConcurrentHashMap<>(); /** Container for embedded Solr cores. */ private static CoreContainer container = null; @@ -81,7 +83,7 @@ public SolrClient getSolrServer() { /** * Ensure that this instance's core is loaded. Create it if necessary. */ - protected void initSolrServer() { + private void initSolrServer() { solrServer = loadedCores.get(coreName); if (solrServer == null) { solrServer = initSolrServerForCore(coreName); @@ -103,7 +105,13 @@ private static synchronized SolrClient initSolrServerForCore(final String coreNa if (server == null) { initSolrContainer(); - server = new EmbeddedSolrServer(container, coreName); + server = new EmbeddedSolrServer(container, coreName) { + // This ugliness should be fixed in Solr 8.9. + // https://issues.apache.org/jira/browse/SOLR-15085 + @Override public void close() { // Copied from Solr's own tests + // Do not close shared core container! + } + }; //Start with an empty index try { @@ -123,6 +131,11 @@ private static synchronized SolrClient initSolrServerForCore(final String coreNa * Remove all records. */ public void reset() { + if (null == solrServer) { + log.warn("reset called with no server connection"); + return; + } + try { solrServer.deleteByQuery("*:*"); } catch (SolrServerException | IOException ex) { @@ -160,7 +173,8 @@ public void destroy() throws Exception { private static synchronized void initSolrContainer() { if (container == null) { Path solrDir = Paths.get(AbstractDSpaceIntegrationTest.getDspaceDir(), "solr"); - log.info("Initializing SOLR CoreContainer with directory {}", solrDir.toAbsolutePath().toString()); + log.info("Initializing SOLR CoreContainer with directory {}", + solrDir.toAbsolutePath().toString()); container = new CoreContainer(solrDir, new Properties()); container.load(); log.info("SOLR CoreContainer initialized"); diff --git a/dspace-api/src/test/java/org/dspace/statistics/EmbeddedSolrClientFactory.java b/dspace-api/src/test/java/org/dspace/statistics/EmbeddedSolrClientFactory.java new file mode 100644 index 000000000000..073734e87515 --- /dev/null +++ b/dspace-api/src/test/java/org/dspace/statistics/EmbeddedSolrClientFactory.java @@ -0,0 +1,85 @@ +/** + * The contents of this file are subject to the license and copyright + * detailed in the LICENSE and NOTICE files at the root of the source + * tree and available online at + * + * http://www.dspace.org/license/ + */ +package org.dspace.statistics; + +import java.net.MalformedURLException; +import java.net.URL; +import java.nio.file.Path; + +import org.apache.logging.log4j.LogManager; +import org.apache.logging.log4j.Logger; +import org.apache.solr.client.solrj.SolrClient; +import org.dspace.solr.MockSolrServer; + +/** + * Factory of EmbeddedSolrClient instances. + * Wrapper for {@link org.dspace.solr.MockSolrServer}. Possibly useful for + * testing. + * + *

+ * To use this: + *

    + *
  1. {@code SolrClientFactory scf = new EmbeddedSolrClientFactory();}
    2. + *
  2. {@code SolrClient mycore = scf.getClient("mycore");}
    3. + *
  3. {@code mycore.this(); mycore.that();}
    4. + *
  4. {@code mycore.destroy();}
    5. + *
+ * + * @author mwood + */ +public class EmbeddedSolrClientFactory + implements SolrClientFactory { + private static final Logger log = LogManager.getLogger(); + + /** Name of this connection's core. */ + private String coreName; + + /** This instance's connection. */ + private SolrClient solrClient = null; + + private MockSolrServer mockSolrServer; + + @Override + public SolrClient getClient(String coreUrl) { + try { + coreName = Path.of(new URL(coreUrl).getPath()) + .getFileName() + .toString(); + } catch (MalformedURLException ex) { + log.warn("Unable to extract core name from URI '{}': {}", + coreUrl, ex.getMessage()); + } + + try { + mockSolrServer = new MockSolrServer(coreName); + solrClient = mockSolrServer.getSolrServer(); + } catch (Exception ex) { + log.warn("Failed to instantiate a MockSolrServer", ex); + solrClient = null; + } + return solrClient; + } + + /** + * Remove all records. + */ + public void reset() { + mockSolrServer.reset(); + } + + /** + * Decrease the reference count for connection to the current core. + * If now zero, shut down the connection and discard it. If no connections + * remain, destroy the container. + * + * @throws Exception passed through. + */ + public void destroy() throws Exception { + mockSolrServer.destroy(); + } +} diff --git a/dspace-api/src/test/java/org/dspace/statistics/SolrLoggerServiceImplIT.java b/dspace-api/src/test/java/org/dspace/statistics/SolrLoggerServiceImplIT.java new file mode 100644 index 000000000000..82f8680aea27 --- /dev/null +++ b/dspace-api/src/test/java/org/dspace/statistics/SolrLoggerServiceImplIT.java @@ -0,0 +1,308 @@ +/** + * The contents of this file are subject to the license and copyright + * detailed in the LICENSE and NOTICE files at the root of the source + * tree and available online at + * + * http://www.dspace.org/license/ + */ +package org.dspace.statistics; + +import static org.dspace.statistics.SolrLoggerServiceImpl.DATE_FORMAT_8601; +import static org.junit.Assert.assertEquals; +import static org.junit.Assert.assertFalse; +import static org.junit.Assert.assertTrue; + +import java.io.IOException; +import java.io.Writer; +import java.nio.charset.StandardCharsets; +import java.nio.file.Files; +import java.nio.file.Path; +import java.nio.file.Paths; +import java.nio.file.StandardOpenOption; +import java.util.Date; + +import org.apache.commons.lang3.time.DateFormatUtils; +import org.apache.solr.client.solrj.SolrClient; +import org.apache.solr.client.solrj.SolrQuery; +import org.apache.solr.client.solrj.SolrServerException; +import org.apache.solr.client.solrj.response.QueryResponse; +import org.apache.solr.common.SolrDocument; +import org.apache.solr.common.SolrInputDocument; +import org.dspace.AbstractIntegrationTestWithDatabase; +import org.dspace.builder.CommunityBuilder; +import org.dspace.content.Community; +import org.dspace.content.factory.ContentServiceFactory; +import org.dspace.core.Constants; +import org.dspace.core.factory.CoreServiceFactory; +import org.dspace.services.ConfigurationService; +import org.dspace.services.factory.DSpaceServicesFactory; +import org.dspace.utils.DSpace; +import org.junit.After; +import org.junit.AfterClass; +import org.junit.Before; +import org.junit.BeforeClass; +import org.junit.Test; + +/** + * Test some methods of SolrLoggerServiceImpl. + * + * @author mwood + */ +public class SolrLoggerServiceImplIT + extends AbstractIntegrationTestWithDatabase { + private static final ConfigurationService cfg + = DSpaceServicesFactory.getInstance().getConfigurationService(); + + // Bot IP list should contain no RFC 1918 private addresses. + private static final String NOT_BOT_IP = "192.168.1.1"; + private static final String BOT_IP = "192.168.2.1"; + + private static final String NOT_BOT_DNS = "angel.com"; + private static final String BOT_DNS = "demon.com"; + + private static final String NOT_BOT_AGENT = "Firefox"; + private static final String BOT_AGENT = "Punchbot"; + + private static final String F_AGENT = "userAgent"; + private static final String F_DNS = "dns"; + private static final String F_EPERSON = "epersonid"; + private static final String F_ID = "id"; + private static final String F_IP = "ip"; + private static final String F_IS_BOT = "isBot"; + private static final String F_STATISTICS_TYPE = "statistics_type"; + private static final String F_TIME = "time"; + private static final String F_TYPE = "type"; + + private static final String Q_ALL = "*:*"; + + private static final String COMMUNITY_NAME = "Top"; + + private static Path testAddressesPath; + private static Path testAgentsPath; + + @BeforeClass + public static void setUpClass() + throws IOException { + Path spidersPath = Paths.get(cfg.getProperty("dspace.dir"), "config", "spiders"); + Writer writer; + + // Ensure the presence of a known "bot" address. + testAddressesPath = Files.createTempFile(spidersPath, "test-ips-", ".txt"); + writer = Files.newBufferedWriter(testAddressesPath, StandardCharsets.UTF_8, + StandardOpenOption.WRITE); + writer.append(BOT_IP) + .append('\n') + .close(); + + // Ensure the presence of a known "bot" agent. + testAgentsPath = Files.createTempFile(spidersPath.resolve("agents"), "test-agents-", ".txt"); + writer = Files.newBufferedWriter(testAgentsPath, StandardCharsets.UTF_8, + StandardOpenOption.WRITE); + writer.append('^') + .append(BOT_AGENT) + .append('\n') + .close(); + } + + @AfterClass + public static void tearDownClass() + throws IOException { + Files.deleteIfExists(testAddressesPath); + Files.deleteIfExists(testAgentsPath); + } + + @Before + public void setUpTest() { + } + + @After + public void tearDownTest() { + } + + /** + * Test of markRobots method, of class SolrLoggerServiceImpl. + * + * @throws SolrServerException passed through. + * @throws IOException passed through. + */ + @Test + public void testMarkRobots() + throws SolrServerException, IOException, Exception { + System.out.println("markRobots"); + + EmbeddedSolrClientFactory clientFactory = new EmbeddedSolrClientFactory(); + ContentServiceFactory csf = ContentServiceFactory.getInstance(); + DSpace dspace = new DSpace(); + + SolrLoggerServiceImpl instance = new SolrLoggerServiceImpl(); + instance.bitstreamService = csf.getBitstreamService(); + instance.contentServiceFactory = csf; + instance.configurationService = DSpaceServicesFactory.getInstance().getConfigurationService(); + instance.clientInfoService = CoreServiceFactory.getInstance().getClientInfoService(); + instance.geoIpService = dspace.getSingletonService(GeoIpService.class); + instance.solrStatisticsCore = dspace.getSingletonService(SolrStatisticsCore.class); + instance.afterPropertiesSet(); + + // Create objects to view. + context.turnOffAuthorisationSystem(); + Community topCommunity = CommunityBuilder.createCommunity(context) + .withName(COMMUNITY_NAME) + .build(); + context.restoreAuthSystemState(); + + // Set up some documents. + SolrClient client = clientFactory.getClient(cfg.getProperty("solr-statistics.server")); + SolrInputDocument doc = new SolrInputDocument(); + doc.setField(F_STATISTICS_TYPE, SolrLoggerServiceImpl.StatisticsType.VIEW); + doc.setField(F_TYPE, String.valueOf(Constants.COMMUNITY)); + doc.setField(F_ID, topCommunity.getID().toString()); + doc.setField(F_EPERSON, eperson.getID().toString()); + + doc.setField(F_IP, NOT_BOT_IP); + doc.setField(F_DNS, NOT_BOT_DNS); + doc.setField(F_AGENT, NOT_BOT_AGENT); + doc.setField(F_TIME, DateFormatUtils.format(new Date(), DATE_FORMAT_8601)); + client.add(doc); + + doc.setField(F_IP, BOT_IP); + doc.setField(F_DNS, BOT_DNS); + doc.setField(F_AGENT, NOT_BOT_AGENT); + doc.setField(F_TIME, DateFormatUtils.format(new Date(), DATE_FORMAT_8601)); + client.add(doc); + + doc.setField(F_IP, NOT_BOT_IP); + doc.setField(F_DNS, NOT_BOT_DNS); + doc.setField(F_AGENT, BOT_AGENT); + doc.setField(F_TIME, DateFormatUtils.format(new Date(), DATE_FORMAT_8601)); + client.add(doc); + + doc.setField(F_IP, BOT_IP); + doc.setField(F_DNS, BOT_DNS); + doc.setField(F_AGENT, BOT_AGENT); + doc.setField(F_TIME, DateFormatUtils.format(new Date(), DATE_FORMAT_8601)); + client.add(doc); + + client.commit(true, true); + + // Scan the core for robot entries and mark them. + cfg.setProperty("solr-statistics.query.filter.isBot", "false"); + instance.markRobots(); + + // Check that documents are marked correctly. + SolrQuery readbackQuery = new SolrQuery() + .setRows(10) + .setQuery(Q_ALL); + QueryResponse response = client.query(readbackQuery); + long nDocs = 0; + long nGood = 0; + for (SolrDocument document : response.getResults()) { + String ip = (String) document.getFieldValue(F_IP); + String agent = (String) document.getFieldValue(F_AGENT); + Object isBotRaw = document.getFieldValue(F_IS_BOT); + boolean isBot = (null == isBotRaw) ? false : (Boolean) isBotRaw; + + if (NOT_BOT_IP.equals(ip) && NOT_BOT_AGENT.equals(agent)) { + assertFalse(String.format("IP %s plus Agent %s is marked as bot --", ip, agent), + isBot); + } else { + assertTrue(String.format("IP %s or Agent %s is not marked as bot --", ip, agent), + isBot); + } + + nDocs++; + if (!isBot) { + nGood++; + } + } + assertEquals("Wrong number of documents", 4, nDocs); + assertEquals("Wrong number of non-bot views", 1, nGood); + } + + /** + * Test of deleteRobots method, of class SolrLoggerServiceImpl. + * @throws SolrServerException passed through. + * @throws IOException passed through. + */ + @Test + public void testDeleteRobots() + throws SolrServerException, IOException, Exception { + System.out.println("deleteRobots"); + + EmbeddedSolrClientFactory clientFactory = new EmbeddedSolrClientFactory(); + ContentServiceFactory csf = ContentServiceFactory.getInstance(); + DSpace dspace = new DSpace(); + + SolrLoggerServiceImpl instance = new SolrLoggerServiceImpl(); + instance.bitstreamService = csf.getBitstreamService(); + instance.contentServiceFactory = csf; + instance.configurationService = cfg; + instance.clientInfoService = CoreServiceFactory.getInstance().getClientInfoService(); + instance.geoIpService = dspace.getSingletonService(GeoIpService.class); + instance.solrStatisticsCore = dspace.getSingletonService(SolrStatisticsCore.class); + instance.afterPropertiesSet(); + + // Create objects to view. + context.turnOffAuthorisationSystem(); + Community topCommunity = CommunityBuilder.createCommunity(context) + .withName(COMMUNITY_NAME) + .build(); + context.restoreAuthSystemState(); + + // Set up some documents. + SolrClient client = clientFactory.getClient(cfg.getProperty("solr-statistics.server")); + SolrInputDocument doc = new SolrInputDocument(); + doc.setField(F_STATISTICS_TYPE, SolrLoggerServiceImpl.StatisticsType.VIEW); + doc.setField(F_TYPE, String.valueOf(Constants.COMMUNITY)); + doc.setField(F_ID, topCommunity.getID().toString()); + doc.setField(F_EPERSON, eperson.getID().toString()); + + doc.setField(F_IP, NOT_BOT_IP); + doc.setField(F_DNS, NOT_BOT_DNS); + doc.setField(F_AGENT, NOT_BOT_AGENT); + doc.setField(F_TIME, DateFormatUtils.format(new Date(), DATE_FORMAT_8601)); + doc.setField(F_IS_BOT, Boolean.FALSE.toString()); + client.add(doc); + + doc.setField(F_IP, BOT_IP); + doc.setField(F_DNS, BOT_DNS); + doc.setField(F_AGENT, NOT_BOT_AGENT); + doc.setField(F_TIME, DateFormatUtils.format(new Date(), DATE_FORMAT_8601)); + doc.setField(F_IS_BOT, Boolean.TRUE.toString()); + client.add(doc); + + doc.setField(F_IP, NOT_BOT_IP); + doc.setField(F_DNS, NOT_BOT_DNS); + doc.setField(F_AGENT, BOT_AGENT); + doc.setField(F_TIME, DateFormatUtils.format(new Date(), DATE_FORMAT_8601)); + doc.setField(F_IS_BOT, Boolean.TRUE.toString()); + client.add(doc); + + doc.setField(F_IP, BOT_IP); + doc.setField(F_DNS, BOT_DNS); + doc.setField(F_AGENT, BOT_AGENT); + doc.setField(F_TIME, DateFormatUtils.format(new Date(), DATE_FORMAT_8601)); + doc.setField(F_IS_BOT, Boolean.TRUE.toString()); + client.add(doc); + + client.commit(true, true); + + // Scan the core for marked robot entries and delete them. + instance.deleteRobots(); + + // Check that the correct documents (and only those) are gone. + QueryResponse response = instance.query(Q_ALL, null, null, + Integer.MAX_VALUE, -1, + null, null, null, null, null, true, 0); + long nDocs = 0; + for (SolrDocument document : response.getResults()) { + nDocs++; + + Object isBotRaw = document.getFieldValue(F_IS_BOT); + boolean isBot = (null == isBotRaw) ? false : (Boolean) isBotRaw; + + assertEquals("Marked document was not removed --", + false, isBot); + } + assertEquals("Wrong number of documents remaining --", 1, nDocs); + } +} diff --git a/dspace-api/src/test/java/org/dspace/statistics/export/ITIrusExportUsageEventListener.java b/dspace-api/src/test/java/org/dspace/statistics/export/ITIrusExportUsageEventListener.java index e28e8284a218..0c861a0d293d 100644 --- a/dspace-api/src/test/java/org/dspace/statistics/export/ITIrusExportUsageEventListener.java +++ b/dspace-api/src/test/java/org/dspace/statistics/export/ITIrusExportUsageEventListener.java @@ -21,8 +21,8 @@ import java.util.ArrayList; import java.util.List; import java.util.regex.Pattern; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.apache.commons.codec.CharEncoding; import org.apache.logging.log4j.LogManager; import org.apache.logging.log4j.Logger; diff --git a/dspace-api/src/test/java/org/dspace/statistics/export/processor/BitstreamEventProcessorIT.java b/dspace-api/src/test/java/org/dspace/statistics/export/processor/BitstreamEventProcessorIT.java index a690b1a1c6ef..605264e4baef 100644 --- a/dspace-api/src/test/java/org/dspace/statistics/export/processor/BitstreamEventProcessorIT.java +++ b/dspace-api/src/test/java/org/dspace/statistics/export/processor/BitstreamEventProcessorIT.java @@ -10,13 +10,14 @@ import static org.hamcrest.MatcherAssert.assertThat; import static org.hamcrest.core.Is.is; import static org.mockito.Mockito.mock; +import static org.mockito.Mockito.when; import java.io.File; import java.io.FileInputStream; import java.io.UnsupportedEncodingException; import java.net.URLEncoder; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.apache.commons.codec.CharEncoding; import org.dspace.AbstractIntegrationTestWithDatabase; import org.dspace.builder.BitstreamBuilder; @@ -63,6 +64,7 @@ public void setUp() throws Exception { */ public void testAddObectSpecificData() throws Exception { HttpServletRequest request = mock(HttpServletRequest.class); + when(request.getRemoteAddr()).thenReturn("127.0.0.1"); context.turnOffAuthorisationSystem(); Community community = CommunityBuilder.createCommunity(context).build(); diff --git a/dspace-api/src/test/java/org/dspace/statistics/export/processor/ExportEventProcessorIT.java b/dspace-api/src/test/java/org/dspace/statistics/export/processor/ExportEventProcessorIT.java index e42003e4fc8b..fb53d0c83c54 100644 --- a/dspace-api/src/test/java/org/dspace/statistics/export/processor/ExportEventProcessorIT.java +++ b/dspace-api/src/test/java/org/dspace/statistics/export/processor/ExportEventProcessorIT.java @@ -18,8 +18,8 @@ import java.io.UnsupportedEncodingException; import java.net.URLEncoder; import java.sql.SQLException; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.apache.commons.codec.CharEncoding; import org.dspace.AbstractIntegrationTestWithDatabase; import org.dspace.builder.CollectionBuilder; diff --git a/dspace-api/src/test/java/org/dspace/statistics/util/DummyHttpServletRequest.java b/dspace-api/src/test/java/org/dspace/statistics/util/DummyHttpServletRequest.java index 61325c652cc1..0059ce4f3fae 100644 --- a/dspace-api/src/test/java/org/dspace/statistics/util/DummyHttpServletRequest.java +++ b/dspace-api/src/test/java/org/dspace/statistics/util/DummyHttpServletRequest.java @@ -19,21 +19,22 @@ import java.util.List; import java.util.Locale; import java.util.Map; -import javax.servlet.AsyncContext; -import javax.servlet.DispatcherType; -import javax.servlet.RequestDispatcher; -import javax.servlet.ServletContext; -import javax.servlet.ServletException; -import javax.servlet.ServletInputStream; -import javax.servlet.ServletRequest; -import javax.servlet.ServletResponse; -import javax.servlet.http.Cookie; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; -import javax.servlet.http.HttpSession; -import javax.servlet.http.HttpUpgradeHandler; -import javax.servlet.http.Part; +import jakarta.servlet.AsyncContext; +import jakarta.servlet.DispatcherType; +import jakarta.servlet.RequestDispatcher; +import jakarta.servlet.ServletConnection; +import jakarta.servlet.ServletContext; +import jakarta.servlet.ServletException; +import jakarta.servlet.ServletInputStream; +import jakarta.servlet.ServletRequest; +import jakarta.servlet.ServletResponse; +import jakarta.servlet.http.Cookie; +import jakarta.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletResponse; +import jakarta.servlet.http.HttpSession; +import jakarta.servlet.http.HttpUpgradeHandler; +import jakarta.servlet.http.Part; import org.apache.commons.collections.CollectionUtils; import org.dspace.core.Utils; @@ -64,7 +65,7 @@ public void setRemoteHost(String host) { } /* (non-Javadoc) - * @see javax.servlet.http.HttpServletRequest#changeSessionId + * @see jakarta.servlet.http.HttpServletRequest#changeSessionId */ @Override public String changeSessionId() { @@ -73,7 +74,7 @@ public String changeSessionId() { } /* (non-Javadoc) - * @see javax.servlet.http.HttpServletRequest#getAuthType() + * @see jakarta.servlet.http.HttpServletRequest#getAuthType() */ @Override public String getAuthType() { @@ -82,7 +83,7 @@ public String getAuthType() { } /* (non-Javadoc) - * @see javax.servlet.http.HttpServletRequest#getContextPath() + * @see jakarta.servlet.http.HttpServletRequest#getContextPath() */ @Override public String getContextPath() { @@ -91,7 +92,7 @@ public String getContextPath() { } /* (non-Javadoc) - * @see javax.servlet.http.HttpServletRequest#getCookies() + * @see jakarta.servlet.http.HttpServletRequest#getCookies() */ @Override public Cookie[] getCookies() { @@ -100,7 +101,7 @@ public Cookie[] getCookies() { } /* (non-Javadoc) - * @see javax.servlet.http.HttpServletRequest#getDateHeader(java.lang.String) + * @see jakarta.servlet.http.HttpServletRequest#getDateHeader(java.lang.String) */ @Override public long getDateHeader(String arg0) { @@ -118,7 +119,7 @@ public void addHeader(String headerName, String headerValue) { values.add(headerValue); } /* (non-Javadoc) - * @see javax.servlet.http.HttpServletRequest#getDispatcherType() + * @see jakarta.servlet.http.HttpServletRequest#getDispatcherType() */ @Override public DispatcherType getDispatcherType() { @@ -127,7 +128,31 @@ public DispatcherType getDispatcherType() { } /* (non-Javadoc) - * @see javax.servlet.http.HttpServletRequest#getHeader(java.lang.String) + * @see jakarta.servlet.http.HttpServletRequest#getRequestId() + */ + @Override + public String getRequestId() { + return null; + } + + /* (non-Javadoc) + * @see jakarta.servlet.http.HttpServletRequest#getProtocolRequestId() + */ + @Override + public String getProtocolRequestId() { + return null; + } + + /* (non-Javadoc) + * @see jakarta.servlet.http.HttpServletRequest#getServletConnection() + */ + @Override + public ServletConnection getServletConnection() { + return null; + } + + /* (non-Javadoc) + * @see jakarta.servlet.http.HttpServletRequest#getHeader(java.lang.String) */ @Override public String getHeader(String key) { @@ -139,7 +164,7 @@ public String getHeader(String key) { } /* (non-Javadoc) - * @see javax.servlet.http.HttpServletRequest#getHeaderNames() + * @see jakarta.servlet.http.HttpServletRequest#getHeaderNames() */ @Override public Enumeration getHeaderNames() { @@ -147,7 +172,7 @@ public Enumeration getHeaderNames() { } /* (non-Javadoc) - * @see javax.servlet.http.HttpServletRequest#getHeaders(java.lang.String) + * @see jakarta.servlet.http.HttpServletRequest#getHeaders(java.lang.String) */ @Override public Enumeration getHeaders(String arg0) { @@ -155,7 +180,7 @@ public Enumeration getHeaders(String arg0) { } /* (non-Javadoc) - * @see javax.servlet.http.HttpServletRequest#getIntHeader(java.lang.String) + * @see jakarta.servlet.http.HttpServletRequest#getIntHeader(java.lang.String) */ @Override public int getIntHeader(String arg0) { @@ -163,7 +188,7 @@ public int getIntHeader(String arg0) { } /* (non-Javadoc) - * @see javax.servlet.http.HttpServletRequest#getMethod() + * @see jakarta.servlet.http.HttpServletRequest#getMethod() */ @Override public String getMethod() { @@ -172,7 +197,7 @@ public String getMethod() { } /* (non-Javadoc) - * @see javax.servlet.http.HttpServletRequest#getPathInfo() + * @see jakarta.servlet.http.HttpServletRequest#getPathInfo() */ @Override public String getPathInfo() { @@ -181,7 +206,7 @@ public String getPathInfo() { } /* (non-Javadoc) - * @see javax.servlet.http.HttpServletRequest#getPathTranslated() + * @see jakarta.servlet.http.HttpServletRequest#getPathTranslated() */ @Override public String getPathTranslated() { @@ -190,7 +215,7 @@ public String getPathTranslated() { } /* (non-Javadoc) - * @see javax.servlet.http.HttpServletRequest#getQueryString() + * @see jakarta.servlet.http.HttpServletRequest#getQueryString() */ @Override public String getQueryString() { @@ -199,7 +224,7 @@ public String getQueryString() { } /* (non-Javadoc) - * @see javax.servlet.http.HttpServletRequest#getRemoteUser() + * @see jakarta.servlet.http.HttpServletRequest#getRemoteUser() */ @Override public String getRemoteUser() { @@ -208,7 +233,7 @@ public String getRemoteUser() { } /* (non-Javadoc) - * @see javax.servlet.http.HttpServletRequest#getRequestURI() + * @see jakarta.servlet.http.HttpServletRequest#getRequestURI() */ @Override public String getRequestURI() { @@ -217,7 +242,7 @@ public String getRequestURI() { } /* (non-Javadoc) - * @see javax.servlet.http.HttpServletRequest#getRequestURL() + * @see jakarta.servlet.http.HttpServletRequest#getRequestURL() */ @Override public StringBuffer getRequestURL() { @@ -226,7 +251,7 @@ public StringBuffer getRequestURL() { } /* (non-Javadoc) - * @see javax.servlet.http.HttpServletRequest#getRequestedSessionId() + * @see jakarta.servlet.http.HttpServletRequest#getRequestedSessionId() */ @Override public String getRequestedSessionId() { @@ -235,7 +260,7 @@ public String getRequestedSessionId() { } /* (non-Javadoc) - * @see javax.servlet.http.HttpServletRequest#getServletPath() + * @see jakarta.servlet.http.HttpServletRequest#getServletPath() */ @Override public String getServletPath() { @@ -244,7 +269,7 @@ public String getServletPath() { } /* (non-Javadoc) - * @see javax.servlet.http.HttpServletRequest#getSession() + * @see jakarta.servlet.http.HttpServletRequest#getSession() */ @Override public HttpSession getSession() { @@ -253,7 +278,7 @@ public HttpSession getSession() { } /* (non-Javadoc) - * @see javax.servlet.http.HttpServletRequest#getSession(boolean) + * @see jakarta.servlet.http.HttpServletRequest#getSession(boolean) */ @Override public HttpSession getSession(boolean arg0) { @@ -262,7 +287,7 @@ public HttpSession getSession(boolean arg0) { } /* (non-Javadoc) - * @see javax.servlet.http.HttpServletRequest#getUserPrincipal() + * @see jakarta.servlet.http.HttpServletRequest#getUserPrincipal() */ @Override public Principal getUserPrincipal() { @@ -271,7 +296,7 @@ public Principal getUserPrincipal() { } /* (non-Javadoc) - * @see javax.servlet.http.HttpServletRequest#isRequestedSessionIdFromCookie() + * @see jakarta.servlet.http.HttpServletRequest#isRequestedSessionIdFromCookie() */ @Override public boolean isRequestedSessionIdFromCookie() { @@ -280,7 +305,7 @@ public boolean isRequestedSessionIdFromCookie() { } /* (non-Javadoc) - * @see javax.servlet.http.HttpServletRequest#isRequestedSessionIdFromURL() + * @see jakarta.servlet.http.HttpServletRequest#isRequestedSessionIdFromURL() */ @Override public boolean isRequestedSessionIdFromURL() { @@ -289,17 +314,7 @@ public boolean isRequestedSessionIdFromURL() { } /* (non-Javadoc) - * @see javax.servlet.http.HttpServletRequest#isRequestedSessionIdFromUrl() - */ - @Override - @Deprecated - public boolean isRequestedSessionIdFromUrl() { - // TODO Auto-generated method stub - return false; - } - - /* (non-Javadoc) - * @see javax.servlet.http.HttpServletRequest#authenticate(javax.servlet.http.HttpServletResponse) + * @see jakarta.servlet.http.HttpServletRequest#authenticate(jakarta.servlet.http.HttpServletResponse) */ @Override public boolean authenticate(HttpServletResponse httpServletResponse) { @@ -307,7 +322,7 @@ public boolean authenticate(HttpServletResponse httpServletResponse) { } /* (non-Javadoc) - * @see javax.servlet.http.HttpServletRequest#login(java.lang.String,java.lang.String) + * @see jakarta.servlet.http.HttpServletRequest#login(java.lang.String,java.lang.String) */ @Override public void login(String s, String s1) { @@ -315,7 +330,7 @@ public void login(String s, String s1) { } /* (non-Javadoc) - * @see javax.servlet.http.HttpServletRequest#logout() + * @see jakarta.servlet.http.HttpServletRequest#logout() */ @Override public void logout() { @@ -323,7 +338,7 @@ public void logout() { } /* (non-Javadoc) - * @see javax.servlet.http.HttpServletRequest#getPart(java.lang.String) + * @see jakarta.servlet.http.HttpServletRequest#getPart(java.lang.String) */ @Override public Part getPart(String arg0) { @@ -332,7 +347,7 @@ public Part getPart(String arg0) { } /* (non-Javadoc) - * @see javax.servlet.http.HttpServletRequest#getParts() + * @see jakarta.servlet.http.HttpServletRequest#getParts() */ @Override public Collection getParts() { @@ -340,7 +355,7 @@ public Collection getParts() { } /* (non-Javadoc) - * @see javax.servlet.http.HttpServletRequest#upgrade(java.lang.Class) + * @see jakarta.servlet.http.HttpServletRequest#upgrade(java.lang.Class) */ @Override public T upgrade(Class aClass) throws IOException, ServletException { @@ -348,7 +363,7 @@ public T upgrade(Class aClass) throws IOExcept } /* (non-Javadoc) - * @see javax.servlet.http.HttpServletRequest#isRequestedSessionIdValid() + * @see jakarta.servlet.http.HttpServletRequest#isRequestedSessionIdValid() */ @Override public boolean isRequestedSessionIdValid() { @@ -357,7 +372,7 @@ public boolean isRequestedSessionIdValid() { } /* (non-Javadoc) - * @see javax.servlet.http.HttpServletRequest#isUserInRole(java.lang.String) + * @see jakarta.servlet.http.HttpServletRequest#isUserInRole(java.lang.String) */ @Override public boolean isUserInRole(String arg0) { @@ -366,7 +381,7 @@ public boolean isUserInRole(String arg0) { } /* (non-Javadoc) - * @see javax.servlet.ServletRequest#getAttribute(java.lang.String) + * @see jakarta.servlet.ServletRequest#getAttribute(java.lang.String) */ @Override public Object getAttribute(String arg0) { @@ -375,7 +390,7 @@ public Object getAttribute(String arg0) { } /* (non-Javadoc) - * @see javax.servlet.ServletRequest#getAttributeNames() + * @see jakarta.servlet.ServletRequest#getAttributeNames() */ @Override public Enumeration getAttributeNames() { @@ -384,7 +399,7 @@ public Enumeration getAttributeNames() { } /* (non-Javadoc) - * @see javax.servlet.ServletRequest#getCharacterEncoding() + * @see jakarta.servlet.ServletRequest#getCharacterEncoding() */ @Override public String getCharacterEncoding() { @@ -393,7 +408,7 @@ public String getCharacterEncoding() { } /* (non-Javadoc) - * @see javax.servlet.ServletRequest#getContentLength() + * @see jakarta.servlet.ServletRequest#getContentLength() */ @Override public int getContentLength() { @@ -402,7 +417,7 @@ public int getContentLength() { } /* (non-Javadoc) - * @see javax.servlet.ServletRequest#getContentLengthLong() + * @see jakarta.servlet.ServletRequest#getContentLengthLong() */ @Override public long getContentLengthLong() { @@ -410,7 +425,7 @@ public long getContentLengthLong() { } /* (non-Javadoc) - * @see javax.servlet.ServletRequest#getContentType() + * @see jakarta.servlet.ServletRequest#getContentType() */ @Override public String getContentType() { @@ -419,7 +434,7 @@ public String getContentType() { } /* (non-Javadoc) - * @see javax.servlet.ServletRequest#getInputStream() + * @see jakarta.servlet.ServletRequest#getInputStream() */ @Override public ServletInputStream getInputStream() throws IOException { @@ -428,7 +443,7 @@ public ServletInputStream getInputStream() throws IOException { } /* (non-Javadoc) - * @see javax.servlet.ServletRequest#getLocale() + * @see jakarta.servlet.ServletRequest#getLocale() */ @Override public Locale getLocale() { @@ -437,7 +452,7 @@ public Locale getLocale() { } /* (non-Javadoc) - * @see javax.servlet.ServletRequest#getLocales() + * @see jakarta.servlet.ServletRequest#getLocales() */ @Override public Enumeration getLocales() { @@ -446,7 +461,7 @@ public Enumeration getLocales() { } /* (non-Javadoc) - * @see javax.servlet.ServletRequest#getParameter(java.lang.String) + * @see jakarta.servlet.ServletRequest#getParameter(java.lang.String) */ @Override public String getParameter(String arg0) { @@ -455,7 +470,7 @@ public String getParameter(String arg0) { } /* (non-Javadoc) - * @see javax.servlet.ServletRequest#getParameterMap() + * @see jakarta.servlet.ServletRequest#getParameterMap() */ @Override public Map getParameterMap() { @@ -464,7 +479,7 @@ public Map getParameterMap() { } /* (non-Javadoc) - * @see javax.servlet.ServletRequest#getParameterNames() + * @see jakarta.servlet.ServletRequest#getParameterNames() */ @Override public Enumeration getParameterNames() { @@ -473,7 +488,7 @@ public Enumeration getParameterNames() { } /* (non-Javadoc) - * @see javax.servlet.ServletRequest#getParameterValues(java.lang.String) + * @see jakarta.servlet.ServletRequest#getParameterValues(java.lang.String) */ @Override public String[] getParameterValues(String arg0) { @@ -482,7 +497,7 @@ public String[] getParameterValues(String arg0) { } /* (non-Javadoc) - * @see javax.servlet.ServletRequest#getProtocol() + * @see jakarta.servlet.ServletRequest#getProtocol() */ @Override public String getProtocol() { @@ -491,7 +506,7 @@ public String getProtocol() { } /* (non-Javadoc) - * @see javax.servlet.ServletRequest#getReader() + * @see jakarta.servlet.ServletRequest#getReader() */ @Override public BufferedReader getReader() throws IOException { @@ -500,17 +515,7 @@ public BufferedReader getReader() throws IOException { } /* (non-Javadoc) - * @see javax.servlet.ServletRequest#getRealPath(java.lang.String) - */ - @Override - @Deprecated - public String getRealPath(String arg0) { - // TODO Auto-generated method stub - return null; - } - - /* (non-Javadoc) - * @see javax.servlet.ServletRequest#getRemoteAddr() + * @see jakarta.servlet.ServletRequest#getRemoteAddr() */ @Override public String getRemoteAddr() { @@ -518,7 +523,7 @@ public String getRemoteAddr() { } /* (non-Javadoc) - * @see javax.servlet.ServletRequest#getRemoteHost() + * @see jakarta.servlet.ServletRequest#getRemoteHost() */ @Override public String getRemoteHost() { @@ -526,7 +531,7 @@ public String getRemoteHost() { } /* (non-Javadoc) - * @see javax.servlet.ServletRequest#getRequestDispatcher(java.lang.String) + * @see jakarta.servlet.ServletRequest#getRequestDispatcher(java.lang.String) */ @Override public RequestDispatcher getRequestDispatcher(String arg0) { @@ -535,7 +540,7 @@ public RequestDispatcher getRequestDispatcher(String arg0) { } /* (non-Javadoc) - * @see javax.servlet.ServletRequest#getScheme() + * @see jakarta.servlet.ServletRequest#getScheme() */ @Override public String getScheme() { @@ -544,7 +549,7 @@ public String getScheme() { } /* (non-Javadoc) - * @see javax.servlet.ServletRequest#getServerName() + * @see jakarta.servlet.ServletRequest#getServerName() */ @Override public String getServerName() { @@ -553,7 +558,7 @@ public String getServerName() { } /* (non-Javadoc) - * @see javax.servlet.ServletRequest#getServerPort() + * @see jakarta.servlet.ServletRequest#getServerPort() */ @Override public int getServerPort() { @@ -562,7 +567,7 @@ public int getServerPort() { } /* (non-Javadoc) - * @see javax.servlet.ServletRequest#isSecure() + * @see jakarta.servlet.ServletRequest#isSecure() */ @Override public boolean isSecure() { @@ -571,7 +576,7 @@ public boolean isSecure() { } /* (non-Javadoc) - * @see javax.servlet.ServletRequest#removeAttribute(java.lang.String) + * @see jakarta.servlet.ServletRequest#removeAttribute(java.lang.String) */ @Override public void removeAttribute(String arg0) { @@ -579,7 +584,7 @@ public void removeAttribute(String arg0) { } /* (non-Javadoc) - * @see javax.servlet.ServletRequest#setAttribute(java.lang.String, java.lang.Object) + * @see jakarta.servlet.ServletRequest#setAttribute(java.lang.String, java.lang.Object) */ @Override public void setAttribute(String arg0, Object arg1) { @@ -587,7 +592,7 @@ public void setAttribute(String arg0, Object arg1) { } /* (non-Javadoc) - * @see javax.servlet.ServletRequest#setCharacterEncoding(java.lang.String) + * @see jakarta.servlet.ServletRequest#setCharacterEncoding(java.lang.String) */ @Override public void setCharacterEncoding(String arg0) @@ -596,7 +601,7 @@ public void setCharacterEncoding(String arg0) } /* (non-Javadoc) - * @see javax.servlet.ServletRequest#startAsync + * @see jakarta.servlet.ServletRequest#startAsync */ @Override public AsyncContext startAsync() throws IllegalStateException { @@ -604,7 +609,7 @@ public AsyncContext startAsync() throws IllegalStateException { } /* (non-Javadoc) - * @see javax.servlet.ServletRequest#startAsync(javax.servlet.ServletRequest,javax.servlet.ServletResponse) + * @see jakarta.servlet.ServletRequest#startAsync(jakarta.servlet.ServletRequest,jakarta.servlet.ServletResponse) */ @Override public AsyncContext startAsync(ServletRequest servletRequest, ServletResponse servletResponse) @@ -613,7 +618,7 @@ public AsyncContext startAsync(ServletRequest servletRequest, ServletResponse se } /* (non-Javadoc) - * @see javax.servlet.ServletRequest#isAsyncStarted + * @see jakarta.servlet.ServletRequest#isAsyncStarted */ @Override public boolean isAsyncStarted() { @@ -621,7 +626,7 @@ public boolean isAsyncStarted() { } /* (non-Javadoc) - * @see javax.servlet.ServletRequest#isAsyncSupported + * @see jakarta.servlet.ServletRequest#isAsyncSupported */ @Override public boolean isAsyncSupported() { @@ -629,7 +634,7 @@ public boolean isAsyncSupported() { } /* (non-Javadoc) - * @see javax.servlet.ServletRequest#getAsyncContext + * @see jakarta.servlet.ServletRequest#getAsyncContext */ @Override public AsyncContext getAsyncContext() { @@ -657,7 +662,7 @@ public int getLocalPort() { } /* (non-Javadoc) - * @see javax.servlet.ServletRequest#getServletContext + * @see jakarta.servlet.ServletRequest#getServletContext */ @Override public ServletContext getServletContext() { diff --git a/dspace-api/src/test/java/org/dspace/statistics/util/SpiderDetectorServiceImplTest.java b/dspace-api/src/test/java/org/dspace/statistics/util/SpiderDetectorServiceImplTest.java index 24f8c0f124be..0b311a3115dd 100644 --- a/dspace-api/src/test/java/org/dspace/statistics/util/SpiderDetectorServiceImplTest.java +++ b/dspace-api/src/test/java/org/dspace/statistics/util/SpiderDetectorServiceImplTest.java @@ -94,7 +94,7 @@ public void testCaseInsensitiveMatching() throws Exception { /** * Test method for - * {@link org.dspace.statistics.util.SpiderDetectorService#isSpider(javax.servlet.http.HttpServletRequest)}. + * {@link org.dspace.statistics.util.SpiderDetectorService#isSpider(jakarta.servlet.http.HttpServletRequest)}. */ @Test public void testIsSpiderHttpServletRequest() { diff --git a/dspace-api/src/test/java/org/dspace/statistics/util/SpiderDetectorTest.java b/dspace-api/src/test/java/org/dspace/statistics/util/SpiderDetectorTest.java index 63046b32b6d4..ba638e4ed796 100644 --- a/dspace-api/src/test/java/org/dspace/statistics/util/SpiderDetectorTest.java +++ b/dspace-api/src/test/java/org/dspace/statistics/util/SpiderDetectorTest.java @@ -49,7 +49,7 @@ public void testGetSpiderIpAddresses() { /** * Test method for - * {@link org.dspace.statistics.util.SpiderDetector#isSpider(javax.servlet.http.HttpServletRequest)}. + * {@link org.dspace.statistics.util.SpiderDetector#isSpider(jakarta.servlet.http.HttpServletRequest)}. */ @Test public void testIsSpiderHttpServletRequest() { diff --git a/dspace-api/src/test/java/org/dspace/storage/bitstore/S3BitStoreServiceIT.java b/dspace-api/src/test/java/org/dspace/storage/bitstore/S3BitStoreServiceIT.java index 72940e0609d8..15e639acd066 100644 --- a/dspace-api/src/test/java/org/dspace/storage/bitstore/S3BitStoreServiceIT.java +++ b/dspace-api/src/test/java/org/dspace/storage/bitstore/S3BitStoreServiceIT.java @@ -42,6 +42,7 @@ import io.findify.s3mock.S3Mock; import org.apache.commons.io.FileUtils; import org.apache.commons.io.IOUtils; +import org.apache.commons.lang3.BooleanUtils; import org.dspace.AbstractIntegrationTestWithDatabase; import org.dspace.app.matcher.LambdaMatcher; import org.dspace.authorize.AuthorizeException; @@ -98,8 +99,9 @@ public void setup() throws Exception { amazonS3Client = createAmazonS3Client(S3_ENDPOINT); s3BitStoreService = new S3BitStoreService(amazonS3Client); - s3BitStoreService.setEnabled(true); - + s3BitStoreService.setEnabled(BooleanUtils.toBoolean( + configurationService.getProperty("assetstore.s3.enabled"))); + s3BitStoreService.setBufferSize(22); context.turnOffAuthorisationSystem(); parentCommunity = CommunityBuilder.createCommunity(context) @@ -139,12 +141,25 @@ public void testBitstreamPutAndGetWithAlreadyPresentBucket() throws IOException assertThat(amazonS3Client.listBuckets(), contains(bucketNamed(bucketName))); context.turnOffAuthorisationSystem(); - String content = "Test bitstream content"; + String content = "Test bitstream content"; + String contentOverOneSpan = "This content span two chunks"; + String contentExactlyTwoSpans = "Test bitstream contentTest bitstream content"; + String contentOverOneTwoSpans = "Test bitstream contentThis content span three chunks"; Bitstream bitstream = createBitstream(content); + Bitstream bitstreamOverOneSpan = createBitstream(contentOverOneSpan); + Bitstream bitstreamExactlyTwoSpans = createBitstream(contentExactlyTwoSpans); + Bitstream bitstreamOverOneTwoSpans = createBitstream(contentOverOneTwoSpans); context.restoreAuthSystemState(); - s3BitStoreService.put(bitstream, toInputStream(content)); + checkGetPut(bucketName, content, bitstream); + checkGetPut(bucketName, contentOverOneSpan, bitstreamOverOneSpan); + checkGetPut(bucketName, contentExactlyTwoSpans, bitstreamExactlyTwoSpans); + checkGetPut(bucketName, contentOverOneTwoSpans, bitstreamOverOneTwoSpans); + } + + private void checkGetPut(String bucketName, String content, Bitstream bitstream) throws IOException { + s3BitStoreService.put(bitstream, toInputStream(content)); String expectedChecksum = Utils.toHex(generateChecksum(content)); assertThat(bitstream.getSizeBytes(), is((long) content.length())); @@ -157,7 +172,6 @@ public void testBitstreamPutAndGetWithAlreadyPresentBucket() throws IOException String key = s3BitStoreService.getFullKey(bitstream.getInternalId()); ObjectMetadata objectMetadata = amazonS3Client.getObjectMetadata(bucketName, key); assertThat(objectMetadata.getContentMD5(), is(expectedChecksum)); - } @Test diff --git a/dspace-api/src/test/java/org/dspace/util/DSpaceConfigurationInitializer.java b/dspace-api/src/test/java/org/dspace/util/DSpaceConfigurationInitializer.java index e2e0355f123a..e5a8adb2fdf7 100644 --- a/dspace-api/src/test/java/org/dspace/util/DSpaceConfigurationInitializer.java +++ b/dspace-api/src/test/java/org/dspace/util/DSpaceConfigurationInitializer.java @@ -8,7 +8,7 @@ package org.dspace.util; import org.apache.commons.configuration2.Configuration; -import org.apache.commons.configuration2.spring.ConfigurationPropertySource; +import org.dspace.servicemanager.config.DSpaceConfigurationPropertySource; import org.dspace.services.ConfigurationService; import org.dspace.services.factory.DSpaceServicesFactory; import org.springframework.context.ApplicationContextInitializer; @@ -38,8 +38,8 @@ public void initialize(final ConfigurableApplicationContext applicationContext) Configuration configuration = configurationService.getConfiguration(); // Create an Apache Commons Configuration Property Source from our configuration - ConfigurationPropertySource apacheCommonsConfigPropertySource = - new ConfigurationPropertySource(configuration.getClass().getName(), configuration); + DSpaceConfigurationPropertySource apacheCommonsConfigPropertySource = + new DSpaceConfigurationPropertySource(configuration.getClass().getName(), configuration); // Prepend it to the Environment's list of PropertySources // NOTE: This is added *first* in the list so that settings in DSpace's diff --git a/dspace-api/src/test/java/org/dspace/util/DSpaceH2Dialect.java b/dspace-api/src/test/java/org/dspace/util/DSpaceH2Dialect.java index 9df86c0218de..cd37a6fb31d9 100644 --- a/dspace-api/src/test/java/org/dspace/util/DSpaceH2Dialect.java +++ b/dspace-api/src/test/java/org/dspace/util/DSpaceH2Dialect.java @@ -11,8 +11,9 @@ import java.util.Map; import java.util.regex.Pattern; +import org.hibernate.boot.model.FunctionContributions; import org.hibernate.dialect.H2Dialect; -import org.hibernate.dialect.function.SQLFunctionTemplate; +import org.hibernate.type.BasicTypeRegistry; import org.hibernate.type.StandardBasicTypes; /** @@ -23,8 +24,16 @@ public class DSpaceH2Dialect extends H2Dialect { private static Map regexCache = new HashMap<>(); - public DSpaceH2Dialect() { - registerFunction("matches", new SQLFunctionTemplate(StandardBasicTypes.BOOLEAN, "matches(?1, ?2)")); + @Override + public void initializeFunctionRegistry(FunctionContributions functionContributions) { + super.initializeFunctionRegistry(functionContributions); + + BasicTypeRegistry basicTypeRegistry = functionContributions.getTypeConfiguration().getBasicTypeRegistry(); + + functionContributions.getFunctionRegistry().registerPattern( + "matches", + "matches(?1, ?2)", + basicTypeRegistry.resolve(StandardBasicTypes.BOOLEAN)); // The SQL function is registered in AbstractIntegrationTestWithDatabase.initDatabase(). } diff --git a/dspace-api/src/test/java/org/dspace/workflow/CurationTaskConfigTest.java b/dspace-api/src/test/java/org/dspace/workflow/CurationTaskConfigTest.java index 92d6ff91481b..61a283c89ef2 100644 --- a/dspace-api/src/test/java/org/dspace/workflow/CurationTaskConfigTest.java +++ b/dspace-api/src/test/java/org/dspace/workflow/CurationTaskConfigTest.java @@ -16,8 +16,8 @@ import java.io.IOException; import java.nio.charset.StandardCharsets; import java.util.List; -import javax.xml.bind.JAXBException; +import jakarta.xml.bind.JAXBException; import org.junit.BeforeClass; import org.junit.Test; import org.xml.sax.SAXException; diff --git a/dspace-api/src/test/java/org/dspace/workflow/WorkflowCurationIT.java b/dspace-api/src/test/java/org/dspace/workflow/WorkflowCurationIT.java index 3fc15533cb1a..e7d625f33905 100644 --- a/dspace-api/src/test/java/org/dspace/workflow/WorkflowCurationIT.java +++ b/dspace-api/src/test/java/org/dspace/workflow/WorkflowCurationIT.java @@ -12,6 +12,7 @@ import java.util.List; import java.util.regex.Pattern; +import jakarta.inject.Inject; import org.dspace.AbstractIntegrationTestWithDatabase; import org.dspace.builder.CollectionBuilder; import org.dspace.builder.CommunityBuilder; diff --git a/dspace-api/src/test/java/org/dspace/xmlworkflow/XmlWorkflowServiceIT.java b/dspace-api/src/test/java/org/dspace/xmlworkflow/XmlWorkflowServiceIT.java index 865abaca2152..20fd0cde26b8 100644 --- a/dspace-api/src/test/java/org/dspace/xmlworkflow/XmlWorkflowServiceIT.java +++ b/dspace-api/src/test/java/org/dspace/xmlworkflow/XmlWorkflowServiceIT.java @@ -12,8 +12,8 @@ import java.io.IOException; import java.sql.SQLException; import java.util.List; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.AbstractIntegrationTestWithDatabase; import org.dspace.authorize.AuthorizeException; import org.dspace.authorize.ResourcePolicy; diff --git a/dspace-api/src/test/java/org/dspace/xmlworkflow/state/actions/processingaction/NoAction.java b/dspace-api/src/test/java/org/dspace/xmlworkflow/state/actions/processingaction/NoAction.java index ae387c97495b..f5e4521fcdc5 100644 --- a/dspace-api/src/test/java/org/dspace/xmlworkflow/state/actions/processingaction/NoAction.java +++ b/dspace-api/src/test/java/org/dspace/xmlworkflow/state/actions/processingaction/NoAction.java @@ -11,8 +11,8 @@ import java.sql.SQLException; import java.util.Collections; import java.util.List; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.authorize.AuthorizeException; import org.dspace.core.Context; import org.dspace.workflow.WorkflowException; diff --git a/dspace-iiif/pom.xml b/dspace-iiif/pom.xml index 187f22dc2fbf..6653e8db576a 100644 --- a/dspace-iiif/pom.xml +++ b/dspace-iiif/pom.xml @@ -75,6 +75,13 @@ org.springframework.boot spring-boot-starter-security ${spring-boot.version} + + + + io.micrometer + micrometer-observation + + diff --git a/dspace-iiif/src/main/java/org/dspace/app/iiif/model/generator/AnnotationGenerator.java b/dspace-iiif/src/main/java/org/dspace/app/iiif/model/generator/AnnotationGenerator.java index 3947df35337f..f6d7aa8950bb 100644 --- a/dspace-iiif/src/main/java/org/dspace/app/iiif/model/generator/AnnotationGenerator.java +++ b/dspace-iiif/src/main/java/org/dspace/app/iiif/model/generator/AnnotationGenerator.java @@ -9,11 +9,11 @@ import java.util.ArrayList; import java.util.List; -import javax.validation.constraints.NotNull; import de.digitalcollections.iiif.model.Motivation; import de.digitalcollections.iiif.model.openannotation.Annotation; import de.digitalcollections.iiif.model.sharedcanvas.Resource; +import jakarta.validation.constraints.NotNull; /** diff --git a/dspace-iiif/src/main/java/org/dspace/app/iiif/model/generator/AnnotationListGenerator.java b/dspace-iiif/src/main/java/org/dspace/app/iiif/model/generator/AnnotationListGenerator.java index da977a5ccc0d..924cf48a9f57 100644 --- a/dspace-iiif/src/main/java/org/dspace/app/iiif/model/generator/AnnotationListGenerator.java +++ b/dspace-iiif/src/main/java/org/dspace/app/iiif/model/generator/AnnotationListGenerator.java @@ -9,11 +9,11 @@ import java.util.ArrayList; import java.util.List; -import javax.validation.constraints.NotNull; import de.digitalcollections.iiif.model.openannotation.Annotation; import de.digitalcollections.iiif.model.sharedcanvas.AnnotationList; import de.digitalcollections.iiif.model.sharedcanvas.Resource; +import jakarta.validation.constraints.NotNull; import org.springframework.stereotype.Component; import org.springframework.web.context.annotation.RequestScope; diff --git a/dspace-iiif/src/main/java/org/dspace/app/iiif/model/generator/CanvasGenerator.java b/dspace-iiif/src/main/java/org/dspace/app/iiif/model/generator/CanvasGenerator.java index f064a1b974ce..701a79aa4bba 100644 --- a/dspace-iiif/src/main/java/org/dspace/app/iiif/model/generator/CanvasGenerator.java +++ b/dspace-iiif/src/main/java/org/dspace/app/iiif/model/generator/CanvasGenerator.java @@ -9,12 +9,12 @@ import java.util.ArrayList; import java.util.List; -import javax.validation.constraints.NotNull; import de.digitalcollections.iiif.model.ImageContent; import de.digitalcollections.iiif.model.MetadataEntry; import de.digitalcollections.iiif.model.sharedcanvas.Canvas; import de.digitalcollections.iiif.model.sharedcanvas.Resource; +import jakarta.validation.constraints.NotNull; /** * This generator wraps the domain model for a single {@code Canvas}. diff --git a/dspace-iiif/src/main/java/org/dspace/app/iiif/model/generator/ContentSearchGenerator.java b/dspace-iiif/src/main/java/org/dspace/app/iiif/model/generator/ContentSearchGenerator.java index 28cc13c07d36..80af636d3589 100644 --- a/dspace-iiif/src/main/java/org/dspace/app/iiif/model/generator/ContentSearchGenerator.java +++ b/dspace-iiif/src/main/java/org/dspace/app/iiif/model/generator/ContentSearchGenerator.java @@ -10,11 +10,11 @@ import java.net.URI; import java.net.URISyntaxException; import java.util.ArrayList; -import javax.validation.constraints.NotNull; import de.digitalcollections.iiif.model.Profile; import de.digitalcollections.iiif.model.Service; import de.digitalcollections.iiif.model.search.ContentSearchService; +import jakarta.validation.constraints.NotNull; import org.springframework.beans.factory.annotation.Autowired; import org.springframework.stereotype.Component; import org.springframework.web.context.annotation.RequestScope; diff --git a/dspace-iiif/src/main/java/org/dspace/app/iiif/model/generator/ExternalLinksGenerator.java b/dspace-iiif/src/main/java/org/dspace/app/iiif/model/generator/ExternalLinksGenerator.java index 94c18283753c..709983e9c5a8 100644 --- a/dspace-iiif/src/main/java/org/dspace/app/iiif/model/generator/ExternalLinksGenerator.java +++ b/dspace-iiif/src/main/java/org/dspace/app/iiif/model/generator/ExternalLinksGenerator.java @@ -7,11 +7,10 @@ */ package org.dspace.app.iiif.model.generator; -import javax.validation.constraints.NotNull; - import de.digitalcollections.iiif.model.OtherContent; import de.digitalcollections.iiif.model.PropertyValue; import de.digitalcollections.iiif.model.sharedcanvas.Resource; +import jakarta.validation.constraints.NotNull; /** * This generator wraps the other content domain model. diff --git a/dspace-iiif/src/main/java/org/dspace/app/iiif/model/generator/ImageContentGenerator.java b/dspace-iiif/src/main/java/org/dspace/app/iiif/model/generator/ImageContentGenerator.java index aef979b6353e..235e7413f606 100644 --- a/dspace-iiif/src/main/java/org/dspace/app/iiif/model/generator/ImageContentGenerator.java +++ b/dspace-iiif/src/main/java/org/dspace/app/iiif/model/generator/ImageContentGenerator.java @@ -7,10 +7,9 @@ */ package org.dspace.app.iiif.model.generator; -import javax.validation.constraints.NotNull; - import de.digitalcollections.iiif.model.ImageContent; import de.digitalcollections.iiif.model.sharedcanvas.Resource; +import jakarta.validation.constraints.NotNull; /** * This service generator wraps the image content model. diff --git a/dspace-iiif/src/main/java/org/dspace/app/iiif/model/generator/ManifestGenerator.java b/dspace-iiif/src/main/java/org/dspace/app/iiif/model/generator/ManifestGenerator.java index 807269264088..dd196154ec6c 100644 --- a/dspace-iiif/src/main/java/org/dspace/app/iiif/model/generator/ManifestGenerator.java +++ b/dspace-iiif/src/main/java/org/dspace/app/iiif/model/generator/ManifestGenerator.java @@ -10,7 +10,6 @@ import java.net.URI; import java.util.ArrayList; import java.util.List; -import javax.validation.constraints.NotNull; import de.digitalcollections.iiif.model.ImageContent; import de.digitalcollections.iiif.model.MetadataEntry; @@ -22,6 +21,7 @@ import de.digitalcollections.iiif.model.sharedcanvas.Range; import de.digitalcollections.iiif.model.sharedcanvas.Resource; import de.digitalcollections.iiif.model.sharedcanvas.Sequence; +import jakarta.validation.constraints.NotNull; import org.springframework.stereotype.Component; import org.springframework.web.context.annotation.RequestScope; diff --git a/dspace-iiif/src/main/java/org/dspace/app/iiif/model/generator/RangeGenerator.java b/dspace-iiif/src/main/java/org/dspace/app/iiif/model/generator/RangeGenerator.java index fe8acf31c43f..5b022bc91631 100644 --- a/dspace-iiif/src/main/java/org/dspace/app/iiif/model/generator/RangeGenerator.java +++ b/dspace-iiif/src/main/java/org/dspace/app/iiif/model/generator/RangeGenerator.java @@ -9,12 +9,12 @@ import java.util.ArrayList; import java.util.List; -import javax.validation.constraints.NotNull; import de.digitalcollections.iiif.model.enums.ViewingHint; import de.digitalcollections.iiif.model.sharedcanvas.Canvas; import de.digitalcollections.iiif.model.sharedcanvas.Range; import de.digitalcollections.iiif.model.sharedcanvas.Resource; +import jakarta.validation.constraints.NotNull; import org.dspace.app.iiif.service.RangeService; /** diff --git a/dspace-oai/pom.xml b/dspace-oai/pom.xml index 3df2d3a9404f..b7519a036946 100644 --- a/dspace-oai/pom.xml +++ b/dspace-oai/pom.xml @@ -154,8 +154,8 @@ - javax.servlet - javax.servlet-api + jakarta.servlet + jakarta.servlet-api provided diff --git a/dspace-oai/src/main/java/org/dspace/app/configuration/OAIWebConfig.java b/dspace-oai/src/main/java/org/dspace/app/configuration/OAIWebConfig.java index 806ecf9d07f4..dc4efde880d5 100644 --- a/dspace-oai/src/main/java/org/dspace/app/configuration/OAIWebConfig.java +++ b/dspace-oai/src/main/java/org/dspace/app/configuration/OAIWebConfig.java @@ -19,7 +19,7 @@ import org.springframework.context.annotation.Configuration; import org.springframework.context.annotation.Import; import org.springframework.web.servlet.config.annotation.ResourceHandlerRegistry; -import org.springframework.web.servlet.config.annotation.WebMvcConfigurerAdapter; +import org.springframework.web.servlet.config.annotation.WebMvcConfigurer; /** * OAI-PMH webapp configuration. Replaces the old web.xml @@ -36,7 +36,7 @@ @Import(BasicConfiguration.class) // Scan for controllers in this package @ComponentScan("org.dspace.xoai.controller") -public class OAIWebConfig extends WebMvcConfigurerAdapter implements JtwigViewResolverConfigurer { +public class OAIWebConfig implements WebMvcConfigurer, JtwigViewResolverConfigurer { // Path where OAI is deployed. Defaults to "oai" // NOTE: deployment on this path is handled by org.dspace.xoai.controller.DSpaceOAIDataProvider diff --git a/dspace-oai/src/main/java/org/dspace/xoai/controller/DSpaceOAIDataProvider.java b/dspace-oai/src/main/java/org/dspace/xoai/controller/DSpaceOAIDataProvider.java index 379f2fa18134..3d826152c6ba 100644 --- a/dspace-oai/src/main/java/org/dspace/xoai/controller/DSpaceOAIDataProvider.java +++ b/dspace-oai/src/main/java/org/dspace/xoai/controller/DSpaceOAIDataProvider.java @@ -7,8 +7,8 @@ */ package org.dspace.xoai.controller; +import static jakarta.servlet.http.HttpServletResponse.SC_BAD_REQUEST; import static java.util.Arrays.asList; -import static javax.servlet.http.HttpServletResponse.SC_BAD_REQUEST; import static org.apache.logging.log4j.LogManager.getLogger; import java.io.IOException; @@ -17,9 +17,6 @@ import java.util.HashMap; import java.util.List; import java.util.Map; -import javax.servlet.ServletException; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; import javax.xml.stream.XMLStreamException; import com.lyncode.xoai.dataprovider.OAIDataProvider; @@ -28,6 +25,9 @@ import com.lyncode.xoai.dataprovider.exceptions.InvalidContextException; import com.lyncode.xoai.dataprovider.exceptions.OAIException; import com.lyncode.xoai.dataprovider.exceptions.WritingXmlException; +import jakarta.servlet.ServletException; +import jakarta.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletResponse; import org.apache.logging.log4j.Logger; import org.dspace.core.Context; import org.dspace.xoai.services.api.cache.XOAICacheService; diff --git a/dspace-oai/src/main/java/org/dspace/xoai/services/impl/DSpaceEarliestDateResolver.java b/dspace-oai/src/main/java/org/dspace/xoai/services/impl/DSpaceEarliestDateResolver.java index 6c378ff6d101..733c1b67e0c3 100644 --- a/dspace-oai/src/main/java/org/dspace/xoai/services/impl/DSpaceEarliestDateResolver.java +++ b/dspace-oai/src/main/java/org/dspace/xoai/services/impl/DSpaceEarliestDateResolver.java @@ -9,8 +9,8 @@ import java.sql.SQLException; import java.util.Date; -import javax.persistence.NoResultException; +import jakarta.persistence.NoResultException; import org.apache.logging.log4j.LogManager; import org.apache.logging.log4j.Logger; import org.dspace.content.MetadataValue; diff --git a/dspace-oai/src/main/java/org/dspace/xoai/services/impl/DSpaceHandleResolver.java b/dspace-oai/src/main/java/org/dspace/xoai/services/impl/DSpaceHandleResolver.java index 6ed44bdcc233..fdce0a23a6ab 100644 --- a/dspace-oai/src/main/java/org/dspace/xoai/services/impl/DSpaceHandleResolver.java +++ b/dspace-oai/src/main/java/org/dspace/xoai/services/impl/DSpaceHandleResolver.java @@ -8,8 +8,8 @@ package org.dspace.xoai.services.impl; import java.sql.SQLException; -import javax.inject.Inject; +import jakarta.inject.Inject; import org.dspace.content.DSpaceObject; import org.dspace.handle.factory.HandleServiceFactory; import org.dspace.handle.service.HandleService; diff --git a/dspace-oai/src/main/java/org/dspace/xoai/services/impl/context/DSpaceContextService.java b/dspace-oai/src/main/java/org/dspace/xoai/services/impl/context/DSpaceContextService.java index 904b7f888539..e86d15a4fa4e 100644 --- a/dspace-oai/src/main/java/org/dspace/xoai/services/impl/context/DSpaceContextService.java +++ b/dspace-oai/src/main/java/org/dspace/xoai/services/impl/context/DSpaceContextService.java @@ -7,8 +7,7 @@ */ package org.dspace.xoai.services.impl.context; -import javax.servlet.http.HttpServletRequest; - +import jakarta.servlet.http.HttpServletRequest; import org.dspace.core.Context; import org.dspace.xoai.services.api.context.ContextService; import org.dspace.xoai.services.api.context.ContextServiceException; diff --git a/dspace-oai/src/main/java/org/dspace/xoai/services/impl/xoai/DSpaceRepositoryConfiguration.java b/dspace-oai/src/main/java/org/dspace/xoai/services/impl/xoai/DSpaceRepositoryConfiguration.java index 2a000f43ea06..8c9841dfb949 100644 --- a/dspace-oai/src/main/java/org/dspace/xoai/services/impl/xoai/DSpaceRepositoryConfiguration.java +++ b/dspace-oai/src/main/java/org/dspace/xoai/services/impl/xoai/DSpaceRepositoryConfiguration.java @@ -14,11 +14,11 @@ import java.util.ArrayList; import java.util.Date; import java.util.List; -import javax.servlet.http.HttpServletRequest; import com.lyncode.xoai.dataprovider.core.DeleteMethod; import com.lyncode.xoai.dataprovider.core.Granularity; import com.lyncode.xoai.dataprovider.services.api.RepositoryConfiguration; +import jakarta.servlet.http.HttpServletRequest; import org.apache.commons.io.FileUtils; import org.apache.logging.log4j.LogManager; import org.apache.logging.log4j.Logger; diff --git a/dspace-rdf/pom.xml b/dspace-rdf/pom.xml index 0fe897b1d9dc..71210588cc1a 100644 --- a/dspace-rdf/pom.xml +++ b/dspace-rdf/pom.xml @@ -71,8 +71,8 @@ - javax.servlet - javax.servlet-api + jakarta.servlet + jakarta.servlet-api provided diff --git a/dspace-rdf/src/main/java/org/dspace/rdf/providing/DataProviderServlet.java b/dspace-rdf/src/main/java/org/dspace/rdf/providing/DataProviderServlet.java index 007f865fb700..2ebcf5836c8f 100644 --- a/dspace-rdf/src/main/java/org/dspace/rdf/providing/DataProviderServlet.java +++ b/dspace-rdf/src/main/java/org/dspace/rdf/providing/DataProviderServlet.java @@ -11,13 +11,13 @@ import java.io.IOException; import java.io.PrintWriter; import java.sql.SQLException; -import javax.servlet.ServletException; -import javax.servlet.http.HttpServlet; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; -import com.hp.hpl.jena.rdf.model.Model; +import jakarta.servlet.ServletException; +import jakarta.servlet.http.HttpServlet; +import jakarta.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletResponse; import org.apache.commons.lang3.StringUtils; +import org.apache.jena.rdf.model.Model; import org.apache.logging.log4j.Logger; import org.dspace.content.DSpaceObject; import org.dspace.core.Context; diff --git a/dspace-rdf/src/main/java/org/dspace/rdf/providing/LocalURIRedirectionServlet.java b/dspace-rdf/src/main/java/org/dspace/rdf/providing/LocalURIRedirectionServlet.java index 7224bb9bfb05..d985740f520d 100644 --- a/dspace-rdf/src/main/java/org/dspace/rdf/providing/LocalURIRedirectionServlet.java +++ b/dspace-rdf/src/main/java/org/dspace/rdf/providing/LocalURIRedirectionServlet.java @@ -9,11 +9,11 @@ import java.io.IOException; import java.sql.SQLException; -import javax.servlet.ServletException; -import javax.servlet.http.HttpServlet; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; +import jakarta.servlet.ServletException; +import jakarta.servlet.http.HttpServlet; +import jakarta.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletResponse; import org.apache.commons.lang3.StringUtils; import org.apache.logging.log4j.Logger; import org.dspace.content.DSpaceObject; diff --git a/dspace-server-webapp/pom.xml b/dspace-server-webapp/pom.xml index 98e8b6515b24..31c36454c42d 100644 --- a/dspace-server-webapp/pom.xml +++ b/dspace-server-webapp/pom.xml @@ -414,6 +414,14 @@ spring-expression ${spring.version} + + + @@ -490,6 +498,7 @@ toastr 2.1.4 + org.webjars.bowergithub.jquery jquery-dist @@ -517,6 +526,7 @@ backbone 1.4.1 + org.webjars.bowergithub.jashkenas underscore @@ -547,6 +557,13 @@ org.springframework.boot spring-boot-starter-security ${spring-boot.version} + + + + io.micrometer + micrometer-observation + + @@ -644,6 +661,7 @@ nimbus-jose-jwt ${nimbus-jose-jwt.version} + net.minidev json-smart @@ -651,6 +669,8 @@ + net.minidev json-smart @@ -688,6 +708,13 @@ spring-boot-starter-test test + + + org.apache.httpcomponents.client5 + httpclient5 + 5.3.1 + test + org.springframework.security spring-security-test @@ -729,6 +756,13 @@ solr-core ${solr.client.version} test + + + + org.antlr + antlr4-runtime + + org.apache.lucene @@ -752,8 +786,8 @@ test - javax.annotation - javax.annotation-api + jakarta.annotation + jakarta.annotation-api diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/AuthenticationRestController.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/AuthenticationRestController.java index 2058b615dec0..5e5f38d6b27b 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/AuthenticationRestController.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/AuthenticationRestController.java @@ -15,9 +15,9 @@ import java.util.Arrays; import java.util.List; import java.util.stream.Collectors; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; +import jakarta.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletResponse; import org.apache.commons.lang3.StringUtils; import org.dspace.app.rest.converter.ConverterService; import org.dspace.app.rest.converter.EPersonConverter; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/BitstreamBundleController.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/BitstreamBundleController.java index 38fb4f4150ad..a26087b49cfe 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/BitstreamBundleController.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/BitstreamBundleController.java @@ -14,9 +14,9 @@ import java.sql.SQLException; import java.util.List; import java.util.UUID; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; +import jakarta.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletResponse; import org.dspace.app.rest.converter.ConverterService; import org.dspace.app.rest.exception.UnprocessableEntityException; import org.dspace.app.rest.link.HalLinkService; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/BitstreamCategoryRestController.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/BitstreamCategoryRestController.java index aa511bcb9282..81968269fac6 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/BitstreamCategoryRestController.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/BitstreamCategoryRestController.java @@ -10,9 +10,9 @@ import static org.dspace.app.rest.utils.ContextUtil.obtainContext; import java.sql.SQLException; -import javax.servlet.http.HttpServletRequest; import com.fasterxml.jackson.databind.JsonNode; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.model.BitstreamRest; import org.dspace.app.rest.repository.BitstreamRestRepository; import org.dspace.authorize.AuthorizeException; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/BitstreamRestController.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/BitstreamRestController.java index e6652d77bb90..491ec0b23d59 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/BitstreamRestController.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/BitstreamRestController.java @@ -15,11 +15,12 @@ import java.sql.SQLException; import java.util.List; import java.util.UUID; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; -import javax.ws.rs.core.Response; +import jakarta.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletResponse; +import jakarta.ws.rs.core.Response; import org.apache.catalina.connector.ClientAbortException; +import org.apache.commons.collections4.ListUtils; import org.apache.commons.lang3.StringUtils; import org.apache.logging.log4j.Logger; import org.dspace.app.rest.converter.ConverterService; @@ -208,12 +209,39 @@ private boolean isNotAnErrorResponse(HttpServletResponse response) { || responseCode.equals(Response.Status.Family.REDIRECTION); } + /** + * Check if a Bitstream of the specified format should always be downloaded (i.e. "content-disposition: attachment") + * or can be opened inline (i.e. "content-disposition: inline"). + *

+ * NOTE that downloading via "attachment" is more secure, as the user's browser will not attempt to process or + * display the file. But, downloading via "inline" may be seen as more user-friendly for common formats. + * @param format BitstreamFormat + * @return true if always download ("attachment"). false if can be opened inline ("inline") + */ private boolean checkFormatForContentDisposition(BitstreamFormat format) { - // never automatically download undefined formats - if (format == null) { - return false; + // Undefined or Unknown formats should ALWAYS be downloaded for additional security. + if (format == null || format.getSupportLevel() == BitstreamFormat.UNKNOWN) { + return true; + } + + // Load additional formats configured to require download + List configuredFormats = List.of(configurationService. + getArrayProperty("webui.content_disposition_format")); + + // If configuration includes "*", then all formats will always be downloaded. + if (configuredFormats.contains("*")) { + return true; } - List formats = List.of((configurationService.getArrayProperty("webui.content_disposition_format"))); + + // Define a download list of formats which DSpace forces to ALWAYS be downloaded. + // These formats can embed JavaScript which may be run in the user's browser if the file is opened inline. + // Therefore, DSpace blocks opening these formats inline as it could be used for an XSS attack. + List downloadOnlyFormats = List.of("text/html", "text/javascript", "text/xml", "rdf"); + + // Combine our two lists + List formats = ListUtils.union(downloadOnlyFormats, configuredFormats); + + // See if the passed in format's MIME type or file extension is listed. boolean download = formats.contains(format.getMIMEType()); if (!download) { for (String ext : format.getExtensions()) { diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/BundleUploadBitstreamController.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/BundleUploadBitstreamController.java index 0cb6bc47e033..d86c54e4fccc 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/BundleUploadBitstreamController.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/BundleUploadBitstreamController.java @@ -13,8 +13,8 @@ import java.io.InputStream; import java.sql.SQLException; import java.util.UUID; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.apache.logging.log4j.LogManager; import org.apache.logging.log4j.Logger; import org.dspace.app.rest.converter.ConverterService; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/CollectionGroupRestController.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/CollectionGroupRestController.java index d85685a188b0..6aa6f7537895 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/CollectionGroupRestController.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/CollectionGroupRestController.java @@ -13,9 +13,9 @@ import java.sql.SQLException; import java.util.List; import java.util.UUID; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; +import jakarta.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletResponse; import org.apache.commons.lang3.StringUtils; import org.dspace.app.rest.converter.ConverterService; import org.dspace.app.rest.exception.UnprocessableEntityException; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/CollectionHarvestSettingsController.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/CollectionHarvestSettingsController.java index 856804808c46..2ff1a851932b 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/CollectionHarvestSettingsController.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/CollectionHarvestSettingsController.java @@ -9,9 +9,9 @@ import java.sql.SQLException; import java.util.UUID; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; +import jakarta.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletResponse; import org.dspace.app.rest.converter.ConverterService; import org.dspace.app.rest.converter.HarvestedCollectionConverter; import org.dspace.app.rest.link.HalLinkService; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/CollectionItemTemplateController.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/CollectionItemTemplateController.java index 6a0890fabc44..66a3965d869e 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/CollectionItemTemplateController.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/CollectionItemTemplateController.java @@ -12,11 +12,11 @@ import java.io.IOException; import java.sql.SQLException; import java.util.UUID; -import javax.servlet.http.HttpServletRequest; -import javax.ws.rs.BadRequestException; import com.fasterxml.jackson.databind.JsonNode; import com.fasterxml.jackson.databind.ObjectMapper; +import jakarta.servlet.http.HttpServletRequest; +import jakarta.ws.rs.BadRequestException; import org.dspace.app.rest.converter.ConverterService; import org.dspace.app.rest.exception.UnprocessableEntityException; import org.dspace.app.rest.model.CollectionRest; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/CollectionLogoController.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/CollectionLogoController.java index 9c69043bb983..7d0535858f1e 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/CollectionLogoController.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/CollectionLogoController.java @@ -12,8 +12,8 @@ import java.io.IOException; import java.sql.SQLException; import java.util.UUID; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.exception.UnprocessableEntityException; import org.dspace.app.rest.model.BitstreamRest; import org.dspace.app.rest.model.CollectionRest; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/CommunityAdminGroupRestController.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/CommunityAdminGroupRestController.java index 2265ac941e6b..77c5d96295a2 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/CommunityAdminGroupRestController.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/CommunityAdminGroupRestController.java @@ -12,9 +12,9 @@ import java.io.IOException; import java.sql.SQLException; import java.util.UUID; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; +import jakarta.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletResponse; import org.dspace.app.rest.converter.ConverterService; import org.dspace.app.rest.exception.UnprocessableEntityException; import org.dspace.app.rest.model.GroupRest; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/CommunityLogoController.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/CommunityLogoController.java index e1efffb19030..72bfc0e5bc64 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/CommunityLogoController.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/CommunityLogoController.java @@ -12,8 +12,8 @@ import java.io.IOException; import java.sql.SQLException; import java.util.UUID; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.exception.UnprocessableEntityException; import org.dspace.app.rest.model.BitstreamRest; import org.dspace.app.rest.model.CommunityRest; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/ContentReportRestController.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/ContentReportRestController.java index dd4196f8910e..c3df859e955e 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/ContentReportRestController.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/ContentReportRestController.java @@ -15,9 +15,9 @@ import java.util.Set; import java.util.stream.Collectors; import java.util.stream.Stream; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; +import jakarta.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletResponse; import org.apache.commons.lang3.StringUtils; import org.apache.logging.log4j.Logger; import org.dspace.app.rest.converter.ConverterService; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/CsrfRestController.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/CsrfRestController.java new file mode 100644 index 000000000000..7f94b22cfea5 --- /dev/null +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/CsrfRestController.java @@ -0,0 +1,62 @@ +/** + * The contents of this file are subject to the license and copyright + * detailed in the LICENSE and NOTICE files at the root of the source + * tree and available online at + * + * http://www.dspace.org/license/ + */ +package org.dspace.app.rest; + +import jakarta.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletResponse; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.context.annotation.Lazy; +import org.springframework.data.rest.webmvc.ControllerUtils; +import org.springframework.hateoas.RepresentationModel; +import org.springframework.http.HttpStatus; +import org.springframework.http.ResponseEntity; +import org.springframework.security.access.prepost.PreAuthorize; +import org.springframework.security.web.csrf.CsrfToken; +import org.springframework.security.web.csrf.CsrfTokenRepository; +import org.springframework.web.bind.annotation.GetMapping; +import org.springframework.web.bind.annotation.RequestMapping; +import org.springframework.web.bind.annotation.RestController; + +/** + * Define GET /api/security/csrf endpoint which may be used to obtain a CSRF token from Spring Security. + * This is useful to force a CSRF token to be generated prior to a POST/PUT/PATCH request that requires it. + *

+ * NOTE: This endpoint should be used sparingly to ensure clients are NOT performing two requests for every modifying + * request (e.g. a GET /csrf followed by a POST/PUT/PATCH to another endpoint). Ideally, calling this endpoint is only + * necessary BEFORE the first POST/PUT/PATCH (if a CSRF token has not yet been obtained), or in scenarios where the + * client must *force* the CSRF token to be reloaded. + */ +@RequestMapping(value = "/api/security") +@RestController +public class CsrfRestController { + + @Lazy + @Autowired + CsrfTokenRepository csrfTokenRepository; + + /** + * Return the current CSRF token as defined by Spring Security. + * Inspired by + * https://docs.spring.io/spring-security/reference/5.8/migration/servlet/exploits.html#_i_am_using_a_single_page_application_with_httpsessioncsrftokenrepository + * @param request HTTP Request + * @param response HTTP response + * @param csrfToken injected CsrfToken by Spring Security + * @return An empty response with CSRF in header & cookie + */ + @GetMapping("/csrf") + @PreAuthorize("permitAll()") + public ResponseEntity> getCsrf(HttpServletRequest request, + HttpServletResponse response, + CsrfToken csrfToken) { + // Save the CSRF token to our response using the currently enabled CsrfTokenRepository + csrfTokenRepository.saveToken(csrfToken, request, response); + + // Return a 204 No Content status + return ControllerUtils.toEmptyResponse(HttpStatus.NO_CONTENT); + } +} diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/EntityTypeLabelRestController.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/EntityTypeLabelRestController.java index 9880f21ab915..93658848b08e 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/EntityTypeLabelRestController.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/EntityTypeLabelRestController.java @@ -8,9 +8,9 @@ package org.dspace.app.rest; import java.sql.SQLException; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; +import jakarta.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletResponse; import org.dspace.app.rest.converter.ConverterService; import org.dspace.app.rest.model.EntityTypeRest; import org.dspace.app.rest.model.hateoas.EntityTypeResource; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/GroupRestController.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/GroupRestController.java index f644863e03f3..4ad2834cbcf5 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/GroupRestController.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/GroupRestController.java @@ -23,9 +23,9 @@ import java.util.UUID; import java.util.regex.Matcher; import java.util.regex.Pattern; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; +import jakarta.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletResponse; import org.dspace.app.rest.exception.UnprocessableEntityException; import org.dspace.app.rest.model.GroupRest; import org.dspace.app.rest.utils.Utils; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/HarvesterMetadataController.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/HarvesterMetadataController.java index dad1a2eb7511..a40629cae5a4 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/HarvesterMetadataController.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/HarvesterMetadataController.java @@ -9,9 +9,9 @@ import java.util.List; import java.util.Map; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; +import jakarta.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletResponse; import org.dspace.app.rest.converter.ConverterService; import org.dspace.app.rest.link.HalLinkService; import org.dspace.app.rest.model.HarvesterMetadataRest; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/ItemAddBundleController.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/ItemAddBundleController.java index 5175dec5e2e3..fd40b5cafd63 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/ItemAddBundleController.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/ItemAddBundleController.java @@ -12,10 +12,10 @@ import java.io.IOException; import java.sql.SQLException; import java.util.UUID; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; import com.fasterxml.jackson.databind.ObjectMapper; +import jakarta.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletResponse; import org.dspace.app.rest.converter.ConverterService; import org.dspace.app.rest.converter.MetadataConverter; import org.dspace.app.rest.exception.UnprocessableEntityException; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/ItemOwningCollectionUpdateRestController.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/ItemOwningCollectionUpdateRestController.java index b5a0c957f265..eec5b15825ac 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/ItemOwningCollectionUpdateRestController.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/ItemOwningCollectionUpdateRestController.java @@ -14,9 +14,9 @@ import java.sql.SQLException; import java.util.List; import java.util.UUID; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; +import jakarta.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletResponse; import org.dspace.app.rest.converter.ConverterService; import org.dspace.app.rest.exception.DSpaceBadRequestException; import org.dspace.app.rest.exception.UnprocessableEntityException; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/ItemTemplateRestController.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/ItemTemplateRestController.java index a6dbf3496e49..5ebc567e600c 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/ItemTemplateRestController.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/ItemTemplateRestController.java @@ -12,9 +12,9 @@ import java.io.IOException; import java.sql.SQLException; import java.util.UUID; -import javax.servlet.http.HttpServletRequest; import com.fasterxml.jackson.databind.JsonNode; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.converter.ConverterService; import org.dspace.app.rest.exception.DSpaceBadRequestException; import org.dspace.app.rest.exception.UnprocessableEntityException; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/LDNInboxController.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/LDNInboxController.java index 5d18494fc28a..f0ccbcf873c4 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/LDNInboxController.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/LDNInboxController.java @@ -9,8 +9,8 @@ import java.sql.SQLException; import java.util.regex.Pattern; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.apache.commons.validator.routines.UrlValidator; import org.apache.logging.log4j.Logger; import org.dspace.app.ldn.LDNMessageEntity; @@ -93,7 +93,7 @@ public ResponseEntity options() { */ @ExceptionHandler(ResponseStatusException.class) public ResponseEntity handleResponseStatusException(ResponseStatusException e) { - return ResponseEntity.status(e.getStatus().value()) + return ResponseEntity.status(e.getStatusCode().value()) .body(e.getMessage()); } diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/MappedCollectionRestController.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/MappedCollectionRestController.java index 14dae21ebec0..6f886096bd30 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/MappedCollectionRestController.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/MappedCollectionRestController.java @@ -14,9 +14,9 @@ import java.sql.SQLException; import java.util.List; import java.util.UUID; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; +import jakarta.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletResponse; import org.apache.logging.log4j.LogManager; import org.apache.logging.log4j.Logger; import org.dspace.app.rest.exception.MethodNotAllowedException; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/OidcRestController.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/OidcRestController.java index 0c35b4333860..eaba79d1a8b2 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/OidcRestController.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/OidcRestController.java @@ -10,9 +10,9 @@ import java.io.IOException; import java.util.ArrayList; import java.util.List; -import javax.annotation.PostConstruct; -import javax.servlet.http.HttpServletResponse; +import jakarta.annotation.PostConstruct; +import jakarta.servlet.http.HttpServletResponse; import org.apache.commons.lang3.StringUtils; import org.apache.logging.log4j.LogManager; import org.apache.logging.log4j.Logger; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/OpenSearchController.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/OpenSearchController.java index b7f94e379685..c7a5c3dbc9b1 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/OpenSearchController.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/OpenSearchController.java @@ -12,15 +12,15 @@ import java.util.HashMap; import java.util.List; import java.util.Map; -import javax.servlet.ServletException; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; import javax.xml.transform.Transformer; import javax.xml.transform.TransformerException; import javax.xml.transform.TransformerFactory; import javax.xml.transform.dom.DOMSource; import javax.xml.transform.stream.StreamResult; +import jakarta.servlet.ServletException; +import jakarta.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletResponse; import org.apache.logging.log4j.Logger; import org.dspace.app.rest.utils.ContextUtil; import org.dspace.app.rest.utils.ScopeResolver; @@ -285,7 +285,6 @@ private Map getLabels(HttpServletRequest request) { labelMap.put(SyndicationFeed.MSG_UNTITLED, "notitle"); labelMap.put(SyndicationFeed.MSG_LOGO_TITLE, "logo.title"); labelMap.put(SyndicationFeed.MSG_FEED_DESCRIPTION, "general-feed.description"); - labelMap.put(SyndicationFeed.MSG_UITYPE, SyndicationFeed.UITYPE_JSPUI); for (String selector : SyndicationFeed.getDescriptionSelectors()) { labelMap.put("metadata." + selector, selector); } diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/PrimaryBitstreamController.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/PrimaryBitstreamController.java index c236954dab48..d978752b7d4c 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/PrimaryBitstreamController.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/PrimaryBitstreamController.java @@ -12,8 +12,8 @@ import java.util.List; import java.util.UUID; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.converter.ConverterService; import org.dspace.app.rest.exception.UnprocessableEntityException; import org.dspace.app.rest.model.BundleRest; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/RelationshipRestController.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/RelationshipRestController.java index 4959d5ac75ee..b9c940f1c107 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/RelationshipRestController.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/RelationshipRestController.java @@ -10,9 +10,9 @@ import static org.dspace.app.rest.utils.RegexUtils.REGEX_REQUESTMAPPING_IDENTIFIER_AS_DIGIT; import java.sql.SQLException; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; +import jakarta.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletResponse; import org.dspace.app.rest.model.RelationshipRest; import org.dspace.app.rest.repository.RelationshipRestRepository; import org.dspace.app.rest.utils.ContextUtil; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/ResourcePolicyEPersonReplaceRestController.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/ResourcePolicyEPersonReplaceRestController.java index b02869962156..8c69b726c0a5 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/ResourcePolicyEPersonReplaceRestController.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/ResourcePolicyEPersonReplaceRestController.java @@ -15,9 +15,9 @@ import java.sql.SQLException; import java.util.List; import java.util.Objects; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; +import jakarta.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletResponse; import org.dspace.app.rest.exception.UnprocessableEntityException; import org.dspace.app.rest.utils.Utils; import org.dspace.authorize.AuthorizeException; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/ResourcePolicyGroupReplaceRestController.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/ResourcePolicyGroupReplaceRestController.java index 40a82068dbce..e29ee1de9688 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/ResourcePolicyGroupReplaceRestController.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/ResourcePolicyGroupReplaceRestController.java @@ -15,9 +15,9 @@ import java.sql.SQLException; import java.util.List; import java.util.Objects; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; +import jakarta.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletResponse; import org.dspace.app.rest.exception.UnprocessableEntityException; import org.dspace.app.rest.utils.Utils; import org.dspace.authorize.AuthorizeException; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/RestResourceController.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/RestResourceController.java index 256a02ebd832..b4e9af2c75d7 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/RestResourceController.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/RestResourceController.java @@ -25,11 +25,11 @@ import java.util.Optional; import java.util.Set; import java.util.UUID; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; import com.fasterxml.jackson.databind.JsonNode; import com.fasterxml.jackson.databind.ObjectMapper; +import jakarta.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletResponse; import org.apache.commons.collections4.CollectionUtils; import org.apache.commons.lang3.StringUtils; import org.apache.logging.log4j.Logger; @@ -57,6 +57,7 @@ import org.dspace.app.rest.utils.Utils; import org.dspace.authorize.AuthorizeException; import org.dspace.util.UUIDUtils; +import org.springframework.aop.AopInvocationException; import org.springframework.beans.factory.InitializingBean; import org.springframework.beans.factory.annotation.Autowired; import org.springframework.data.domain.Page; @@ -228,8 +229,10 @@ private HALResource findOneInter Optional modelObject = Optional.empty(); try { modelObject = repository.findById(id); - } catch (ClassCastException e) { - // ignore, as handled below + } catch (ClassCastException | IllegalArgumentException | AopInvocationException e) { + // These exceptions may be thrown if the "id" param above is not valid for DSpaceRestRepository.findById() + // (e.g. passing an Integer param when a UUID is expected, or similar). + // We can safely ignore these exceptions as they simply mean the object was not found (see below). } if (!modelObject.isPresent()) { throw new ResourceNotFoundException(apiCategory + "." + model + " with id: " + id + " not found"); @@ -379,7 +382,8 @@ public RepresentationModel findRel(HttpServletRequest request, HttpServletRespon * @return The relevant ResponseEntity for this request * @throws HttpRequestMethodNotSupportedException If something goes wrong */ - @RequestMapping(method = RequestMethod.POST, consumes = {"application/json", "application/hal+json"}) + @RequestMapping(method = RequestMethod.POST, value = {"", "/"}, + consumes = {"application/json", "application/hal+json"}) public ResponseEntity> post(HttpServletRequest request, @PathVariable String apiCategory, @PathVariable String model, @@ -406,7 +410,7 @@ public ResponseEntity> post(HttpServletRequest request, * @return The relevant ResponseEntity for this request * @throws HttpRequestMethodNotSupportedException If something goes wrong */ - @RequestMapping(method = RequestMethod.POST, consumes = {"text/uri-list"}) + @RequestMapping(method = RequestMethod.POST, value = {"", "/"}, consumes = {"text/uri-list"}) public ResponseEntity> postWithUriListContentType(HttpServletRequest request, @PathVariable String apiCategory, @PathVariable String model) @@ -659,7 +663,7 @@ private ResponseEntity> uploadI * @throws IOException * @throws AuthorizeException */ - @RequestMapping(method = { RequestMethod.POST }, headers = "content-type=multipart/form-data") + @RequestMapping(method = { RequestMethod.POST }, value = {"", "/"}, headers = "content-type=multipart/form-data") public ResponseEntity> upload( HttpServletRequest request, @PathVariable String apiCategory, @@ -970,7 +974,8 @@ private RepresentationModel findRelInternal(HttpServle } /** - * Find all + * Find all via a GET request to the root endpoint. This method will trigger in cases where the called endpoint + * either includes a trailing slash or not. * * @param apiCategory * @param model @@ -978,7 +983,7 @@ private RepresentationModel findRelInternal(HttpServle * @param assembler * @return */ - @RequestMapping(method = RequestMethod.GET) + @RequestMapping(method = RequestMethod.GET, value = {"", "/"}) @SuppressWarnings("unchecked") public PagedModel> findAll(@PathVariable String apiCategory, @PathVariable String model, Pageable page, PagedResourcesAssembler assembler, HttpServletResponse response, diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/RootRestResourceController.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/RootRestResourceController.java index 7cb1854af88a..d6ed84c3d656 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/RootRestResourceController.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/RootRestResourceController.java @@ -7,8 +7,7 @@ */ package org.dspace.app.rest; -import javax.servlet.http.HttpServletRequest; - +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.converter.ConverterService; import org.dspace.app.rest.link.HalLinkService; import org.dspace.app.rest.model.hateoas.RootResource; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/SitemapRestController.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/SitemapRestController.java index efc79f2a395d..95d0ba772959 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/SitemapRestController.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/SitemapRestController.java @@ -13,9 +13,9 @@ import java.io.InputStream; import java.nio.file.Files; import java.sql.SQLException; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; +import jakarta.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletResponse; import org.apache.catalina.connector.ClientAbortException; import org.apache.logging.log4j.Logger; import org.dspace.app.rest.utils.ContextUtil; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/SubmissionCCLicenseUrlRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/SubmissionCCLicenseUrlRepository.java index d65e569c80e8..6daac9be8cf0 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/SubmissionCCLicenseUrlRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/SubmissionCCLicenseUrlRepository.java @@ -10,8 +10,8 @@ import java.util.Arrays; import java.util.HashMap; import java.util.Map; -import javax.servlet.ServletRequest; +import jakarta.servlet.ServletRequest; import org.apache.commons.lang3.StringUtils; import org.dspace.app.rest.converter.ConverterService; import org.dspace.app.rest.exception.DSpaceBadRequestException; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/UUIDLookupRestController.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/UUIDLookupRestController.java index 40c0a79b97be..8a35794aa193 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/UUIDLookupRestController.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/UUIDLookupRestController.java @@ -14,9 +14,9 @@ import java.sql.SQLException; import java.util.Arrays; import java.util.UUID; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; +import jakarta.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletResponse; import org.apache.logging.log4j.LogManager; import org.apache.logging.log4j.Logger; import org.dspace.app.rest.converter.ConverterService; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/WebApplication.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/WebApplication.java index 4837fc3b49df..c446fde3e16c 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/WebApplication.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/WebApplication.java @@ -10,8 +10,8 @@ import java.io.IOException; import java.sql.SQLException; import java.util.List; -import javax.servlet.Filter; +import jakarta.servlet.Filter; import org.apache.commons.lang3.ArrayUtils; import org.dspace.app.ldn.LDNQueueExtractor; import org.dspace.app.ldn.LDNQueueTimeoutChecker; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/WorkflowDefinitionCollectionsLinkRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/WorkflowDefinitionCollectionsLinkRepository.java index 53d61216e6e7..549a5ec78e93 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/WorkflowDefinitionCollectionsLinkRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/WorkflowDefinitionCollectionsLinkRepository.java @@ -9,9 +9,9 @@ import java.util.ArrayList; import java.util.List; -import javax.annotation.Nullable; -import javax.servlet.http.HttpServletRequest; +import jakarta.annotation.Nullable; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.model.CollectionRest; import org.dspace.app.rest.model.WorkflowDefinitionRest; import org.dspace.app.rest.projection.Projection; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/WorkflowDefinitionStepsLinkRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/WorkflowDefinitionStepsLinkRepository.java index bf8ac0cf201e..91cb0cffc0f4 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/WorkflowDefinitionStepsLinkRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/WorkflowDefinitionStepsLinkRepository.java @@ -8,9 +8,9 @@ package org.dspace.app.rest; import java.util.List; -import javax.annotation.Nullable; -import javax.servlet.http.HttpServletRequest; +import jakarta.annotation.Nullable; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.model.WorkflowDefinitionRest; import org.dspace.app.rest.model.WorkflowStepRest; import org.dspace.app.rest.projection.Projection; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/WorkflowStepActionsLinkRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/WorkflowStepActionsLinkRepository.java index 2d1e61411f8a..4a86798ae335 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/WorkflowStepActionsLinkRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/WorkflowStepActionsLinkRepository.java @@ -8,9 +8,9 @@ package org.dspace.app.rest; import java.util.List; -import javax.annotation.Nullable; -import javax.servlet.http.HttpServletRequest; +import jakarta.annotation.Nullable; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.model.WorkflowActionRest; import org.dspace.app.rest.model.WorkflowStepRest; import org.dspace.app.rest.projection.Projection; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/authorization/impl/DeleteFeature.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/authorization/impl/DeleteFeature.java index 02ca816290d0..0f5378125d8f 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/authorization/impl/DeleteFeature.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/authorization/impl/DeleteFeature.java @@ -65,11 +65,13 @@ public class DeleteFeature implements AuthorizationFeature { @Override public boolean isAuthorized(Context context, BaseObjectRest object) throws SQLException { if (object instanceof BaseObjectRest) { + DSpaceObject dSpaceObject = (DSpaceObject) utils.getDSpaceAPIObjectFromRest(context, object); + if (object.getType().equals(WorkspaceItemRest.NAME)) { - object = ((WorkspaceItemRest)object).getItem(); + WorkspaceItem workspaceItem = (WorkspaceItem) utils.getDSpaceAPIObjectFromRest(context, object); + dSpaceObject = workspaceItem.getItem(); } - DSpaceObject dSpaceObject = (DSpaceObject) utils.getDSpaceAPIObjectFromRest(context, object); DSpaceObject parentObject = getParentObject(context, dSpaceObject); switch (object.getType()) { diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/configuration/ActuatorConfiguration.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/configuration/ActuatorConfiguration.java index ad78fe2db40b..08a7e9aec8e9 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/configuration/ActuatorConfiguration.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/configuration/ActuatorConfiguration.java @@ -14,6 +14,7 @@ import org.apache.solr.client.solrj.SolrServerException; import org.dspace.app.rest.DiscoverableEndpointsService; import org.dspace.app.rest.health.GeoIpHealthIndicator; +import org.dspace.app.rest.health.SolrHealthIndicator; import org.dspace.authority.AuthoritySolrServiceImpl; import org.dspace.discovery.SolrSearchCore; import org.dspace.statistics.SolrStatisticsCore; @@ -22,7 +23,6 @@ import org.springframework.beans.factory.annotation.Value; import org.springframework.boot.actuate.autoconfigure.health.ConditionalOnEnabledHealthIndicator; import org.springframework.boot.actuate.health.Status; -import org.springframework.boot.actuate.solr.SolrHealthIndicator; import org.springframework.boot.autoconfigure.condition.ConditionalOnProperty; import org.springframework.boot.context.event.ApplicationReadyEvent; import org.springframework.context.annotation.Bean; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/converter/AInprogressItemConverter.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/converter/AInprogressItemConverter.java index 8c0b721c8400..1111274b09fd 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/converter/AInprogressItemConverter.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/converter/AInprogressItemConverter.java @@ -27,7 +27,6 @@ import org.dspace.content.InProgressSubmission; import org.dspace.content.Item; import org.dspace.core.Context; -import org.dspace.eperson.EPerson; import org.dspace.services.RequestService; import org.dspace.services.model.Request; import org.dspace.submit.factory.SubmissionServiceFactory; @@ -83,14 +82,8 @@ public AInprogressItemConverter() throws SubmissionConfigReaderException { protected void fillFromModel(T obj, R witem, Projection projection) { Collection collection = obj.getCollection(); Item item = obj.getItem(); - EPerson submitter = null; - submitter = obj.getSubmitter(); witem.setId(obj.getID()); - witem.setCollection(collection != null ? converter.toRest(collection, projection) : null); - if (submitter != null) { - witem.setSubmitter(converter.toRest(submitter, projection)); - } // 1. retrieve the submission definition // 2. iterate over the submission section to allow to plugin additional @@ -139,8 +132,6 @@ protected void fillFromModel(T obj, R witem, Projection projection) { } } - // need to be after to have stored the submission-name in the request attribute - witem.setItem(converter.toRest(item, projection)); } private SubmissionConfig getSubmissionConfig(Item item, Collection collection) { diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/converter/CollectionConverter.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/converter/CollectionConverter.java index e9b6aa03b85a..8cae60eca39e 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/converter/CollectionConverter.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/converter/CollectionConverter.java @@ -9,8 +9,11 @@ import org.dspace.app.rest.model.CollectionRest; import org.dspace.app.rest.projection.Projection; +import org.dspace.app.rest.utils.ContextUtil; import org.dspace.content.Collection; +import org.dspace.content.service.CollectionService; import org.dspace.discovery.IndexableObject; +import org.springframework.beans.factory.annotation.Autowired; import org.springframework.stereotype.Component; /** @@ -23,10 +26,14 @@ public class CollectionConverter extends DSpaceObjectConverter implements IndexableObjectConverter { + @Autowired + CollectionService collectionService; + @Override public CollectionRest convert(Collection collection, Projection projection) { CollectionRest resource = super.convert(collection, projection); - resource.setArchivedItemsCount(collection.countArchivedItems()); + resource.setArchivedItemsCount( + collectionService.countArchivedItems(ContextUtil.obtainCurrentRequestContext(), collection)); return resource; } diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/converter/CommunityConverter.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/converter/CommunityConverter.java index a90ad3cfe644..62062e08139c 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/converter/CommunityConverter.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/converter/CommunityConverter.java @@ -9,8 +9,11 @@ import org.dspace.app.rest.model.CommunityRest; import org.dspace.app.rest.projection.Projection; +import org.dspace.app.rest.utils.ContextUtil; import org.dspace.content.Community; +import org.dspace.content.service.CommunityService; import org.dspace.discovery.IndexableObject; +import org.springframework.beans.factory.annotation.Autowired; import org.springframework.stereotype.Component; /** @@ -24,9 +27,14 @@ public class CommunityConverter extends DSpaceObjectConverter implements IndexableObjectConverter { + @Autowired + CommunityService communityService; + public CommunityRest convert(Community community, Projection projection) { CommunityRest resource = super.convert(community, projection); - resource.setArchivedItemsCount(community.countArchivedItems()); + + resource.setArchivedItemsCount( + communityService.countArchivedItems(ContextUtil.obtainCurrentRequestContext(), community)); return resource; } diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/converter/ConverterService.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/converter/ConverterService.java index 55ae7b9595a9..abb79d57984c 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/converter/ConverterService.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/converter/ConverterService.java @@ -16,9 +16,9 @@ import java.util.List; import java.util.Map; import java.util.Set; -import javax.annotation.Nullable; -import javax.annotation.PostConstruct; +import jakarta.annotation.Nullable; +import jakarta.annotation.PostConstruct; import org.apache.commons.lang3.StringUtils; import org.apache.logging.log4j.LogManager; import org.apache.logging.log4j.Logger; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/converter/JsonPatchConverter.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/converter/JsonPatchConverter.java index aba4d6a99536..89cbc1c2d7d1 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/converter/JsonPatchConverter.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/converter/JsonPatchConverter.java @@ -10,13 +10,13 @@ import java.util.ArrayList; import java.util.Iterator; import java.util.List; -import javax.annotation.Nonnull; import com.fasterxml.jackson.databind.JsonNode; import com.fasterxml.jackson.databind.ObjectMapper; import com.fasterxml.jackson.databind.node.ArrayNode; import com.fasterxml.jackson.databind.node.JsonNodeFactory; import com.fasterxml.jackson.databind.node.ObjectNode; +import jakarta.annotation.Nonnull; import org.dspace.app.rest.model.patch.AddOperation; import org.dspace.app.rest.model.patch.CopyOperation; import org.dspace.app.rest.model.patch.FromOperation; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/converter/QAEventConverter.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/converter/QAEventConverter.java index b908bf3e41f1..098f4dafb75b 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/converter/QAEventConverter.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/converter/QAEventConverter.java @@ -10,12 +10,12 @@ import java.text.DecimalFormat; import java.text.DecimalFormatSymbols; import java.util.Locale; -import javax.annotation.PostConstruct; import com.fasterxml.jackson.core.JsonProcessingException; import com.fasterxml.jackson.databind.DeserializationFeature; import com.fasterxml.jackson.databind.ObjectMapper; import com.fasterxml.jackson.databind.json.JsonMapper; +import jakarta.annotation.PostConstruct; import org.dspace.app.rest.model.CorrectionTypeQAEventMessageRest; import org.dspace.app.rest.model.NotifyQAEventMessageRest; import org.dspace.app.rest.model.OpenaireQAEventMessageRest; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/converter/RequestItemConverter.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/converter/RequestItemConverter.java index 27ea4f66305b..e6d6f4da2aee 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/converter/RequestItemConverter.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/converter/RequestItemConverter.java @@ -8,8 +8,7 @@ package org.dspace.app.rest.converter; -import javax.inject.Named; - +import jakarta.inject.Named; import org.dspace.app.requestitem.RequestItem; import org.dspace.app.rest.model.RequestItemRest; import org.dspace.app.rest.projection.Projection; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/converter/SearchEventConverter.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/converter/SearchEventConverter.java index 126d37ba1ace..e9786962e0f5 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/converter/SearchEventConverter.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/converter/SearchEventConverter.java @@ -11,8 +11,8 @@ import java.util.Arrays; import java.util.LinkedList; import java.util.List; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.apache.log4j.Logger; import org.dspace.app.rest.model.PageRest; import org.dspace.app.rest.model.SearchEventRest; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/converter/SubmissionDefinitionConverter.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/converter/SubmissionDefinitionConverter.java index a84545520463..8e4fd247874c 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/converter/SubmissionDefinitionConverter.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/converter/SubmissionDefinitionConverter.java @@ -11,8 +11,8 @@ import java.util.LinkedList; import java.util.List; import java.util.stream.Collectors; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.apache.logging.log4j.Logger; import org.dspace.app.rest.model.CollectionRest; import org.dspace.app.rest.model.SubmissionDefinitionRest; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/exception/DSpaceAccessDeniedHandler.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/exception/DSpaceAccessDeniedHandler.java index c2842d33d2bc..8df77f424a7d 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/exception/DSpaceAccessDeniedHandler.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/exception/DSpaceAccessDeniedHandler.java @@ -8,10 +8,10 @@ package org.dspace.app.rest.exception; import java.io.IOException; -import javax.servlet.ServletException; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; +import jakarta.servlet.ServletException; +import jakarta.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletResponse; import org.springframework.beans.factory.annotation.Autowired; import org.springframework.beans.factory.annotation.Qualifier; import org.springframework.context.annotation.Lazy; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/exception/DSpaceApiExceptionControllerAdvice.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/exception/DSpaceApiExceptionControllerAdvice.java index 6801a4398326..33b9ae0e2fbf 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/exception/DSpaceApiExceptionControllerAdvice.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/exception/DSpaceApiExceptionControllerAdvice.java @@ -7,7 +7,7 @@ */ package org.dspace.app.rest.exception; -import static javax.servlet.http.HttpServletResponse.SC_FORBIDDEN; +import static jakarta.servlet.http.HttpServletResponse.SC_FORBIDDEN; import static org.springframework.web.servlet.DispatcherServlet.EXCEPTION_ATTRIBUTE; import java.io.IOException; @@ -15,10 +15,10 @@ import java.util.HashSet; import java.util.Objects; import java.util.Set; -import javax.inject.Inject; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; +import jakarta.inject.Inject; +import jakarta.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletResponse; import org.apache.logging.log4j.LogManager; import org.apache.logging.log4j.Logger; import org.dspace.app.exception.ResourceAlreadyExistsException; @@ -39,6 +39,7 @@ import org.springframework.data.repository.support.QueryMethodParameterConversionException; import org.springframework.http.HttpHeaders; import org.springframework.http.HttpStatus; +import org.springframework.http.HttpStatusCode; import org.springframework.http.ResponseEntity; import org.springframework.security.access.AccessDeniedException; import org.springframework.security.web.csrf.InvalidCsrfTokenException; @@ -48,7 +49,6 @@ import org.springframework.web.bind.annotation.ExceptionHandler; import org.springframework.web.bind.annotation.ResponseStatus; import org.springframework.web.context.request.WebRequest; -import org.springframework.web.multipart.MaxUploadSizeExceededException; import org.springframework.web.multipart.MultipartException; import org.springframework.web.servlet.mvc.method.annotation.ResponseEntityExceptionHandler; @@ -111,13 +111,6 @@ protected void handleWrongRequestException(HttpServletRequest request, HttpServl sendErrorResponse(request, response, ex, "Request is invalid or incorrect", HttpServletResponse.SC_BAD_REQUEST); } - @ExceptionHandler(MaxUploadSizeExceededException.class) - protected void handleMaxUploadSizeExceededException(HttpServletRequest request, HttpServletResponse response, - Exception ex) throws IOException { - sendErrorResponse(request, response, ex, "Request entity is too large", - HttpServletResponse.SC_REQUEST_ENTITY_TOO_LARGE); - } - @ExceptionHandler(SQLException.class) protected void handleSQLException(HttpServletRequest request, HttpServletResponse response, Exception ex) throws IOException { @@ -220,7 +213,7 @@ protected ResponseEntity handleCustomUnprocessableEditException(HttpServ @ExceptionHandler(QueryMethodParameterConversionException.class) protected void ParameterConversionException(HttpServletRequest request, HttpServletResponse response, Exception ex) throws IOException { - // we want the 400 status for missing parameters, see https://jira.lyrasis.org/browse/DS-4428 + // we want the 400 status for missing parameters, see https://github.com/DSpace/DSpace/issues/7765 sendErrorResponse(request, response, ex, "A required parameter is invalid", HttpStatus.BAD_REQUEST.value()); @@ -229,7 +222,7 @@ protected void ParameterConversionException(HttpServletRequest request, HttpServ @ExceptionHandler(MissingParameterException.class) protected void MissingParameterException(HttpServletRequest request, HttpServletResponse response, Exception ex) throws IOException { - // we want the 400 status for missing parameters, see https://jira.lyrasis.org/browse/DS-4428 + // we want the 400 status for missing parameters, see https://github.com/DSpace/DSpace/issues/7765 sendErrorResponse(request, response, ex, "A required parameter is missing", HttpStatus.BAD_REQUEST.value()); @@ -255,16 +248,16 @@ protected ResponseEntity resourceConflictException(Resource @Override protected ResponseEntity handleMissingServletRequestParameter(MissingServletRequestParameterException ex, - HttpHeaders headers, HttpStatus status, + HttpHeaders headers, HttpStatusCode status, WebRequest request) { - // we want the 400 status for missing parameters, see https://jira.lyrasis.org/browse/DS-4428 + // we want the 400 status for missing parameters, see https://github.com/DSpace/DSpace/issues/7765 return super.handleMissingServletRequestParameter(ex, headers, HttpStatus.BAD_REQUEST, request); } @Override protected ResponseEntity handleTypeMismatch(TypeMismatchException ex, HttpHeaders headers, - HttpStatus status, WebRequest request) { - // we want the 400 status for missing parameters, see https://jira.lyrasis.org/browse/DS-4428 + HttpStatusCode status, WebRequest request) { + // we want the 400 status for missing parameters, see https://github.com/DSpace/DSpace/issues/7765 return super.handleTypeMismatch(ex, headers, HttpStatus.BAD_REQUEST, request); } diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/filter/ContentLanguageHeaderResponseFilter.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/filter/ContentLanguageHeaderResponseFilter.java index 74ffd73ad463..5f45f7edc554 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/filter/ContentLanguageHeaderResponseFilter.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/filter/ContentLanguageHeaderResponseFilter.java @@ -9,14 +9,14 @@ import java.io.IOException; import java.util.Locale; -import javax.servlet.Filter; -import javax.servlet.FilterChain; -import javax.servlet.FilterConfig; -import javax.servlet.ServletException; -import javax.servlet.ServletRequest; -import javax.servlet.ServletResponse; -import javax.servlet.http.HttpServletResponse; +import jakarta.servlet.Filter; +import jakarta.servlet.FilterChain; +import jakarta.servlet.FilterConfig; +import jakarta.servlet.ServletException; +import jakarta.servlet.ServletRequest; +import jakarta.servlet.ServletResponse; +import jakarta.servlet.http.HttpServletResponse; import org.dspace.core.I18nUtil; import org.springframework.stereotype.Component; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/filter/DSpaceRequestContextFilter.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/filter/DSpaceRequestContextFilter.java index 99e65c199239..59cf70202154 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/filter/DSpaceRequestContextFilter.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/filter/DSpaceRequestContextFilter.java @@ -8,13 +8,13 @@ package org.dspace.app.rest.filter; import java.io.IOException; -import javax.servlet.Filter; -import javax.servlet.FilterChain; -import javax.servlet.FilterConfig; -import javax.servlet.ServletException; -import javax.servlet.ServletRequest; -import javax.servlet.ServletResponse; +import jakarta.servlet.Filter; +import jakarta.servlet.FilterChain; +import jakarta.servlet.FilterConfig; +import jakarta.servlet.ServletException; +import jakarta.servlet.ServletRequest; +import jakarta.servlet.ServletResponse; import org.dspace.app.rest.utils.ContextUtil; import org.dspace.core.Context; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/hdlresolver/HdlResolverRestController.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/hdlresolver/HdlResolverRestController.java index 540c3fd17243..3fe897e0e5e1 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/hdlresolver/HdlResolverRestController.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/hdlresolver/HdlResolverRestController.java @@ -10,10 +10,10 @@ import java.text.MessageFormat; import java.util.List; import java.util.Optional; -import javax.servlet.http.HttpServletRequest; import com.fasterxml.jackson.core.JsonProcessingException; import com.fasterxml.jackson.databind.ObjectMapper; +import jakarta.servlet.http.HttpServletRequest; import org.apache.commons.lang.StringUtils; import org.apache.logging.log4j.LogManager; import org.apache.logging.log4j.Logger; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/health/SolrHealthIndicator.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/health/SolrHealthIndicator.java new file mode 100644 index 000000000000..1d9f4fee24de --- /dev/null +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/health/SolrHealthIndicator.java @@ -0,0 +1,123 @@ +/** + * The contents of this file are subject to the license and copyright + * detailed in the LICENSE and NOTICE files at the root of the source + * tree and available online at + * + * http://www.dspace.org/license/ + */ +package org.dspace.app.rest.health; + +import org.apache.solr.client.solrj.SolrClient; +import org.apache.solr.client.solrj.impl.BaseHttpSolrClient.RemoteSolrException; +import org.apache.solr.client.solrj.request.CoreAdminRequest; +import org.apache.solr.common.params.CoreAdminParams; +import org.springframework.boot.actuate.health.AbstractHealthIndicator; +import org.springframework.boot.actuate.health.Health; +import org.springframework.boot.actuate.health.HealthIndicator; +import org.springframework.boot.actuate.health.Status; + +/** + * {@link HealthIndicator} for Apache Solr. + * + * This is copied from the 'org.springframework.boot.actuate.solr.SolrHealthIndicator' in Spring Boot v2, + * as that class was removed in Spring Boot v3. See https://github.com/spring-projects/spring-boot/issues/31054 + * + * This HealthIndicator has updated by DSpace to support later versions of Spring Boot and Solr. + */ +public class SolrHealthIndicator extends AbstractHealthIndicator { + + private static final int HTTP_NOT_FOUND_STATUS = 404; + + private final SolrClient solrClient; + + private volatile StatusCheck statusCheck; + + public SolrHealthIndicator(SolrClient solrClient) { + super("Solr health check failed"); + this.solrClient = solrClient; + } + + @Override + protected void doHealthCheck(Health.Builder builder) throws Exception { + int statusCode = initializeStatusCheck(); + Status status = (statusCode != 0) ? Status.DOWN : Status.UP; + builder.status(status).withDetail("status", statusCode).withDetail("detectedPathType", + this.statusCheck.getPathType()); + } + + private int initializeStatusCheck() throws Exception { + StatusCheck statusCheck = this.statusCheck; + if (statusCheck != null) { + // Already initialized + return statusCheck.getStatus(this.solrClient); + } + try { + return initializeStatusCheck(new RootStatusCheck()); + } catch (RemoteSolrException ex) { + // 404 is thrown when SolrClient has a baseUrl pointing to a particular core. + if (ex.code() == HTTP_NOT_FOUND_STATUS) { + return initializeStatusCheck(new ParticularCoreStatusCheck()); + } + throw ex; + } + } + + private int initializeStatusCheck(StatusCheck statusCheck) throws Exception { + int result = statusCheck.getStatus(this.solrClient); + this.statusCheck = statusCheck; + return result; + } + + /** + * Strategy used to perform the status check. + */ + private abstract static class StatusCheck { + + private final String pathType; + + StatusCheck(String pathType) { + this.pathType = pathType; + } + + abstract int getStatus(SolrClient client) throws Exception; + + String getPathType() { + return this.pathType; + } + + } + + /** + * {@link StatusCheck} used when {@code baseUrl} points to the root context. + */ + private static class RootStatusCheck extends StatusCheck { + + RootStatusCheck() { + super("root"); + } + + @Override + public int getStatus(SolrClient client) throws Exception { + CoreAdminRequest request = new CoreAdminRequest(); + request.setAction(CoreAdminParams.CoreAdminAction.STATUS); + return request.process(client).getStatus(); + } + + } + + /** + * {@link StatusCheck} used when {@code baseUrl} points to the particular core. + */ + private static class ParticularCoreStatusCheck extends StatusCheck { + + ParticularCoreStatusCheck() { + super("particular core"); + } + + @Override + public int getStatus(SolrClient client) throws Exception { + return client.ping().getStatus(); + } + + } +} \ No newline at end of file diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/AInprogressSubmissionRest.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/AInprogressSubmissionRest.java index f2e049ed89e6..3bf7a43e5a59 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/AInprogressSubmissionRest.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/AInprogressSubmissionRest.java @@ -22,16 +22,11 @@ */ public abstract class AInprogressSubmissionRest extends BaseObjectRest { + private Date lastModified = new Date(); private Map sections; @JsonIgnore - private CollectionRest collection; - @JsonIgnore - private ItemRest item; - @JsonIgnore private SubmissionDefinitionRest submissionDefinition; - @JsonIgnore - private EPersonRest submitter; public Date getLastModified() { return lastModified; @@ -41,14 +36,6 @@ public void setLastModified(Date lastModified) { this.lastModified = lastModified; } - public ItemRest getItem() { - return item; - } - - public void setItem(ItemRest item) { - this.item = item; - } - public SubmissionDefinitionRest getSubmissionDefinition() { return submissionDefinition; } @@ -57,14 +44,6 @@ public void setSubmissionDefinition(SubmissionDefinitionRest submissionDefinitio this.submissionDefinition = submissionDefinition; } - public EPersonRest getSubmitter() { - return submitter; - } - - public void setSubmitter(EPersonRest submitter) { - this.submitter = submitter; - } - public Map getSections() { if (sections == null) { sections = new HashMap(); @@ -76,12 +55,6 @@ public void setSections(Map sections) { this.sections = sections; } - public CollectionRest getCollection() { - return collection; - } - public void setCollection(CollectionRest collection) { - this.collection = collection; - } } diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/WorkflowItemRest.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/WorkflowItemRest.java index 278d5de85d3f..65fa531c5e42 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/WorkflowItemRest.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/WorkflowItemRest.java @@ -15,10 +15,22 @@ * @author Andrea Bollini (andrea.bollini at 4science.it) */ @LinksRest(links = { - @LinkRest( - name = WorkflowItemRest.STEP, - method = "getStep" - ) + @LinkRest( + name = WorkflowItemRest.STEP, + method = "getStep" + ), + @LinkRest( + name = WorkflowItemRest.SUBMITTER, + method = "getWorkflowItemSubmitter" + ), + @LinkRest( + name = WorkflowItemRest.ITEM, + method = "getWorkflowItemItem" + ), + @LinkRest( + name = WorkflowItemRest.COLLECTION, + method = "getWorkflowItemCollection" + ) }) public class WorkflowItemRest extends AInprogressSubmissionRest { public static final String NAME = "workflowitem"; @@ -27,6 +39,11 @@ public class WorkflowItemRest extends AInprogressSubmissionRest { public static final String STEP = "step"; + public static final String SUBMITTER = "submitter"; + public static final String ITEM = "item"; + public static final String COLLECTION = "collection"; + + @Override public String getCategory() { return CATEGORY; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/WorkspaceItemRest.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/WorkspaceItemRest.java index 7501ad4c59a7..e3e30db5b760 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/WorkspaceItemRest.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/WorkspaceItemRest.java @@ -18,6 +18,18 @@ @LinkRest( name = WorkspaceItemRest.SUPERVISION_ORDERS, method = "getSupervisionOrders" + ), + @LinkRest( + name = WorkspaceItemRest.SUBMITTER, + method = "getWorkspaceItemSubmitter" + ), + @LinkRest( + name = WorkspaceItemRest.ITEM, + method = "getWorkspaceItemItem" + ), + @LinkRest( + name = WorkspaceItemRest.COLLECTION, + method = "getWorkspaceItemCollection" ) }) public class WorkspaceItemRest extends AInprogressSubmissionRest { @@ -26,6 +38,9 @@ public class WorkspaceItemRest extends AInprogressSubmissionRest { public static final String CATEGORY = RestAddressableModel.SUBMISSION; public static final String SUPERVISION_ORDERS = "supervisionOrders"; + public static final String SUBMITTER = "submitter"; + public static final String ITEM = "item"; + public static final String COLLECTION = "collection"; @Override public String getCategory() { diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/patch/JsonValueEvaluator.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/patch/JsonValueEvaluator.java index 07d488f518e4..67127ccf8fcf 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/patch/JsonValueEvaluator.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/patch/JsonValueEvaluator.java @@ -7,10 +7,9 @@ */ package org.dspace.app.rest.model.patch; -import javax.annotation.Nonnull; - import com.fasterxml.jackson.databind.JsonNode; import com.fasterxml.jackson.databind.ObjectMapper; +import jakarta.annotation.Nonnull; import org.springframework.data.rest.webmvc.json.patch.PatchException; /** diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/projection/Projection.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/projection/Projection.java index e9856fdf352a..6773a59ccdc2 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/projection/Projection.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/projection/Projection.java @@ -7,8 +7,7 @@ */ package org.dspace.app.rest.projection; -import javax.persistence.Entity; - +import jakarta.persistence.Entity; import org.dspace.app.rest.model.LinkRest; import org.dspace.app.rest.model.RestAddressableModel; import org.dspace.app.rest.model.RestModel; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/AuthorizationEpersonLinkRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/AuthorizationEpersonLinkRepository.java index dad973b0f845..ca123d2de84d 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/AuthorizationEpersonLinkRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/AuthorizationEpersonLinkRepository.java @@ -8,9 +8,9 @@ package org.dspace.app.rest.repository; import java.sql.SQLException; -import javax.annotation.Nullable; -import javax.servlet.http.HttpServletRequest; +import jakarta.annotation.Nullable; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.authorization.AuthorizationRestUtil; import org.dspace.app.rest.model.AuthorizationRest; import org.dspace.app.rest.model.EPersonRest; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/AuthorizationFeatureLinkRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/AuthorizationFeatureLinkRepository.java index 6bf8b2236791..f450aa61b523 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/AuthorizationFeatureLinkRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/AuthorizationFeatureLinkRepository.java @@ -7,9 +7,8 @@ */ package org.dspace.app.rest.repository; -import javax.annotation.Nullable; -import javax.servlet.http.HttpServletRequest; - +import jakarta.annotation.Nullable; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.authorization.AuthorizationFeature; import org.dspace.app.rest.authorization.AuthorizationFeatureService; import org.dspace.app.rest.authorization.AuthorizationRestUtil; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/AuthorizationObjectLinkRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/AuthorizationObjectLinkRepository.java index 5bf7c1b9b6cc..6c9697d4424b 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/AuthorizationObjectLinkRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/AuthorizationObjectLinkRepository.java @@ -8,9 +8,9 @@ package org.dspace.app.rest.repository; import java.sql.SQLException; -import javax.annotation.Nullable; -import javax.servlet.http.HttpServletRequest; +import jakarta.annotation.Nullable; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.authorization.AuthorizationRestUtil; import org.dspace.app.rest.model.AuthorizationRest; import org.dspace.app.rest.model.BaseObjectRest; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/BitstreamBundleLinkRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/BitstreamBundleLinkRepository.java index 17c26174d3f1..a2c3ab95bed5 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/BitstreamBundleLinkRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/BitstreamBundleLinkRepository.java @@ -9,9 +9,9 @@ import java.sql.SQLException; import java.util.UUID; -import javax.annotation.Nullable; -import javax.servlet.http.HttpServletRequest; +import jakarta.annotation.Nullable; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.model.BitstreamRest; import org.dspace.app.rest.model.BundleRest; import org.dspace.app.rest.projection.Projection; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/BitstreamFormatLinkRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/BitstreamFormatLinkRepository.java index 491eb2c34817..d86128c34469 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/BitstreamFormatLinkRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/BitstreamFormatLinkRepository.java @@ -9,9 +9,9 @@ import java.sql.SQLException; import java.util.UUID; -import javax.annotation.Nullable; -import javax.servlet.http.HttpServletRequest; +import jakarta.annotation.Nullable; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.model.BitstreamFormatRest; import org.dspace.app.rest.model.BitstreamRest; import org.dspace.app.rest.projection.Projection; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/BitstreamFormatRestRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/BitstreamFormatRestRepository.java index c4c1981f9d78..1ae8600a5c94 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/BitstreamFormatRestRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/BitstreamFormatRestRepository.java @@ -10,11 +10,11 @@ import java.io.IOException; import java.sql.SQLException; import java.util.List; -import javax.servlet.ServletInputStream; -import javax.servlet.http.HttpServletRequest; import com.fasterxml.jackson.databind.JsonNode; import com.fasterxml.jackson.databind.ObjectMapper; +import jakarta.servlet.ServletInputStream; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.exception.DSpaceBadRequestException; import org.dspace.app.rest.exception.UnprocessableEntityException; import org.dspace.app.rest.model.BitstreamFormatRest; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/BitstreamRestRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/BitstreamRestRepository.java index a012f94399a8..d148ed2012f3 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/BitstreamRestRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/BitstreamRestRepository.java @@ -18,11 +18,12 @@ import java.util.Map; import java.util.Optional; import java.util.UUID; -import javax.annotation.Nullable; -import javax.servlet.http.HttpServletRequest; import com.fasterxml.jackson.databind.JsonNode; import com.fasterxml.jackson.databind.ObjectMapper; + +import jakarta.annotation.Nullable; +import jakarta.servlet.http.HttpServletRequest; import org.apache.commons.lang3.StringUtils; import org.dspace.app.rest.Parameter; import org.dspace.app.rest.SearchRestMethod; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/BitstreamThumbnailLinkRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/BitstreamThumbnailLinkRepository.java index 543d62035207..ba5465382f22 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/BitstreamThumbnailLinkRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/BitstreamThumbnailLinkRepository.java @@ -10,9 +10,9 @@ import java.sql.SQLException; import java.util.UUID; -import javax.annotation.Nullable; -import javax.servlet.http.HttpServletRequest; +import jakarta.annotation.Nullable; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.model.BitstreamRest; import org.dspace.app.rest.projection.Projection; import org.dspace.authorize.service.AuthorizeService; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/BrowseEntryLinkRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/BrowseEntryLinkRepository.java index cc1fcc9d5d9d..52fcbeecfdd8 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/BrowseEntryLinkRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/BrowseEntryLinkRepository.java @@ -10,8 +10,8 @@ import java.sql.SQLException; import java.util.Arrays; import java.util.Iterator; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.apache.commons.lang3.StringUtils; import org.dspace.app.rest.converter.BrowseEntryConverter; import org.dspace.app.rest.model.BrowseEntryRest; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/BrowseItemLinkRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/BrowseItemLinkRepository.java index 6dcf65fd501c..286a3216bf04 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/BrowseItemLinkRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/BrowseItemLinkRepository.java @@ -11,8 +11,8 @@ import java.util.ArrayList; import java.util.Iterator; import java.util.List; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.apache.commons.lang3.StringUtils; import org.dspace.app.rest.model.BrowseIndexRest; import org.dspace.app.rest.model.ItemRest; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/BundleBitstreamLinkRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/BundleBitstreamLinkRepository.java index 393b49052071..3893ef561b28 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/BundleBitstreamLinkRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/BundleBitstreamLinkRepository.java @@ -9,9 +9,9 @@ import java.sql.SQLException; import java.util.UUID; -import javax.annotation.Nullable; -import javax.servlet.http.HttpServletRequest; +import jakarta.annotation.Nullable; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.model.BitstreamRest; import org.dspace.app.rest.model.BundleRest; import org.dspace.app.rest.projection.Projection; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/BundleItemLinkRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/BundleItemLinkRepository.java index 53dedddfbfc4..d23e9e96e6ef 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/BundleItemLinkRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/BundleItemLinkRepository.java @@ -9,9 +9,9 @@ import java.sql.SQLException; import java.util.UUID; -import javax.annotation.Nullable; -import javax.servlet.http.HttpServletRequest; +import jakarta.annotation.Nullable; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.model.BundleRest; import org.dspace.app.rest.model.ItemRest; import org.dspace.app.rest.projection.Projection; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/BundlePrimaryBitstreamLinkRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/BundlePrimaryBitstreamLinkRepository.java index f419b0b8aaf3..e6f0e1cd2e42 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/BundlePrimaryBitstreamLinkRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/BundlePrimaryBitstreamLinkRepository.java @@ -9,9 +9,9 @@ import java.sql.SQLException; import java.util.UUID; -import javax.annotation.Nullable; -import javax.servlet.http.HttpServletRequest; +import jakarta.annotation.Nullable; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.exception.DSpaceBadRequestException; import org.dspace.app.rest.exception.UnprocessableEntityException; import org.dspace.app.rest.model.BitstreamRest; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/BundleRestRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/BundleRestRepository.java index e12594ddc143..dbc67dd0155b 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/BundleRestRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/BundleRestRepository.java @@ -12,9 +12,9 @@ import java.sql.SQLException; import java.util.List; import java.util.UUID; -import javax.servlet.http.HttpServletRequest; import com.fasterxml.jackson.databind.ObjectMapper; +import jakarta.servlet.http.HttpServletRequest; import org.apache.commons.lang3.StringUtils; import org.apache.logging.log4j.LogManager; import org.apache.logging.log4j.Logger; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ClaimedTaskRestRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ClaimedTaskRestRepository.java index a5934833a629..f68cb85c2be1 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ClaimedTaskRestRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ClaimedTaskRestRepository.java @@ -12,9 +12,9 @@ import java.util.Arrays; import java.util.List; import java.util.UUID; -import javax.mail.MessagingException; -import javax.servlet.http.HttpServletRequest; +import jakarta.mail.MessagingException; +import jakarta.servlet.http.HttpServletRequest; import org.apache.commons.lang3.StringUtils; import org.apache.logging.log4j.LogManager; import org.apache.logging.log4j.Logger; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ClaimedTaskStepLinkRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ClaimedTaskStepLinkRepository.java index 3093a2ac0c9f..3079d0360923 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ClaimedTaskStepLinkRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ClaimedTaskStepLinkRepository.java @@ -8,9 +8,9 @@ package org.dspace.app.rest.repository; import java.sql.SQLException; -import javax.annotation.Nullable; -import javax.servlet.http.HttpServletRequest; +import jakarta.annotation.Nullable; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.model.ClaimedTaskRest; import org.dspace.app.rest.model.WorkflowStepRest; import org.dspace.app.rest.projection.Projection; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/CollectionAdminGroupLinkRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/CollectionAdminGroupLinkRepository.java index 0ce8aa82e307..22a6c31f1e94 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/CollectionAdminGroupLinkRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/CollectionAdminGroupLinkRepository.java @@ -9,9 +9,9 @@ import java.sql.SQLException; import java.util.UUID; -import javax.annotation.Nullable; -import javax.servlet.http.HttpServletRequest; +import jakarta.annotation.Nullable; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.model.CollectionRest; import org.dspace.app.rest.model.GroupRest; import org.dspace.app.rest.projection.Projection; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/CollectionBitstreamReadGroupLinkRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/CollectionBitstreamReadGroupLinkRepository.java index 55cacf3e33f7..f96af09cb958 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/CollectionBitstreamReadGroupLinkRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/CollectionBitstreamReadGroupLinkRepository.java @@ -10,9 +10,9 @@ import java.sql.SQLException; import java.util.List; import java.util.UUID; -import javax.annotation.Nullable; -import javax.servlet.http.HttpServletRequest; +import jakarta.annotation.Nullable; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.model.CollectionRest; import org.dspace.app.rest.model.GroupRest; import org.dspace.app.rest.projection.Projection; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/CollectionItemReadGroupLinkRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/CollectionItemReadGroupLinkRepository.java index a8bf3615cf87..5badc4cb7bc2 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/CollectionItemReadGroupLinkRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/CollectionItemReadGroupLinkRepository.java @@ -10,9 +10,9 @@ import java.sql.SQLException; import java.util.List; import java.util.UUID; -import javax.annotation.Nullable; -import javax.servlet.http.HttpServletRequest; +import jakarta.annotation.Nullable; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.model.CollectionRest; import org.dspace.app.rest.model.GroupRest; import org.dspace.app.rest.projection.Projection; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/CollectionLicenseLinkRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/CollectionLicenseLinkRepository.java index dcb9705dbc16..ed0b253bd764 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/CollectionLicenseLinkRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/CollectionLicenseLinkRepository.java @@ -9,9 +9,9 @@ import java.sql.SQLException; import java.util.UUID; -import javax.annotation.Nullable; -import javax.servlet.http.HttpServletRequest; +import jakarta.annotation.Nullable; +import jakarta.servlet.http.HttpServletRequest; import org.apache.commons.lang3.StringUtils; import org.dspace.app.rest.model.CollectionRest; import org.dspace.app.rest.model.LicenseRest; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/CollectionLogoLinkRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/CollectionLogoLinkRepository.java index cf2360dc05fa..3549e4972d8f 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/CollectionLogoLinkRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/CollectionLogoLinkRepository.java @@ -9,9 +9,9 @@ import java.sql.SQLException; import java.util.UUID; -import javax.annotation.Nullable; -import javax.servlet.http.HttpServletRequest; +import jakarta.annotation.Nullable; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.model.BitstreamRest; import org.dspace.app.rest.model.CollectionRest; import org.dspace.app.rest.projection.Projection; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/CollectionMappedItemLinkRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/CollectionMappedItemLinkRepository.java index 02795b312e96..892130239e76 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/CollectionMappedItemLinkRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/CollectionMappedItemLinkRepository.java @@ -11,9 +11,9 @@ import java.util.ArrayList; import java.util.List; import java.util.UUID; -import javax.annotation.Nullable; -import javax.servlet.http.HttpServletRequest; +import jakarta.annotation.Nullable; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.model.CollectionRest; import org.dspace.app.rest.model.ItemRest; import org.dspace.app.rest.projection.Projection; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/CollectionParentCommunityLinkRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/CollectionParentCommunityLinkRepository.java index 62a6f4e41d7e..bbec0aa1d40b 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/CollectionParentCommunityLinkRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/CollectionParentCommunityLinkRepository.java @@ -9,9 +9,9 @@ import java.sql.SQLException; import java.util.UUID; -import javax.annotation.Nullable; -import javax.servlet.http.HttpServletRequest; +import jakarta.annotation.Nullable; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.model.CollectionRest; import org.dspace.app.rest.model.CommunityRest; import org.dspace.app.rest.projection.Projection; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/CollectionRestRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/CollectionRestRepository.java index a101a4637bed..c1bc995b67b5 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/CollectionRestRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/CollectionRestRepository.java @@ -14,11 +14,11 @@ import java.util.Objects; import java.util.SortedMap; import java.util.UUID; -import javax.servlet.ServletInputStream; -import javax.servlet.http.HttpServletRequest; import com.fasterxml.jackson.databind.JsonNode; import com.fasterxml.jackson.databind.ObjectMapper; +import jakarta.servlet.ServletInputStream; +import jakarta.servlet.http.HttpServletRequest; import org.apache.commons.lang3.StringUtils; import org.apache.logging.log4j.Logger; import org.dspace.app.rest.Parameter; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/CollectionSubmitterGroupLinkRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/CollectionSubmitterGroupLinkRepository.java index 58645479fa61..48acc2b83294 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/CollectionSubmitterGroupLinkRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/CollectionSubmitterGroupLinkRepository.java @@ -9,9 +9,9 @@ import java.sql.SQLException; import java.util.UUID; -import javax.annotation.Nullable; -import javax.servlet.http.HttpServletRequest; +import jakarta.annotation.Nullable; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.model.CollectionRest; import org.dspace.app.rest.model.GroupRest; import org.dspace.app.rest.projection.Projection; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/CommunityAdminGroupLinkRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/CommunityAdminGroupLinkRepository.java index a3550584080b..cf36b8c915c2 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/CommunityAdminGroupLinkRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/CommunityAdminGroupLinkRepository.java @@ -9,9 +9,9 @@ import java.sql.SQLException; import java.util.UUID; -import javax.annotation.Nullable; -import javax.servlet.http.HttpServletRequest; +import jakarta.annotation.Nullable; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.model.CommunityRest; import org.dspace.app.rest.model.GroupRest; import org.dspace.app.rest.projection.Projection; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/CommunityCollectionLinkRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/CommunityCollectionLinkRepository.java index f8e88918327e..1fa3468a519e 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/CommunityCollectionLinkRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/CommunityCollectionLinkRepository.java @@ -12,9 +12,9 @@ import java.util.LinkedList; import java.util.List; import java.util.UUID; -import javax.annotation.Nullable; -import javax.servlet.http.HttpServletRequest; +import jakarta.annotation.Nullable; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.model.CollectionRest; import org.dspace.app.rest.model.CommunityRest; import org.dspace.app.rest.projection.Projection; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/CommunityLogoLinkRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/CommunityLogoLinkRepository.java index 0765e2efa3e1..1c828f81de8a 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/CommunityLogoLinkRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/CommunityLogoLinkRepository.java @@ -9,9 +9,9 @@ import java.sql.SQLException; import java.util.UUID; -import javax.annotation.Nullable; -import javax.servlet.http.HttpServletRequest; +import jakarta.annotation.Nullable; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.model.BitstreamRest; import org.dspace.app.rest.model.CommunityRest; import org.dspace.app.rest.projection.Projection; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/CommunityParentCommunityLinkRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/CommunityParentCommunityLinkRepository.java index 7c14c944c26a..a9c778501596 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/CommunityParentCommunityLinkRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/CommunityParentCommunityLinkRepository.java @@ -9,9 +9,9 @@ import java.sql.SQLException; import java.util.UUID; -import javax.annotation.Nullable; -import javax.servlet.http.HttpServletRequest; +import jakarta.annotation.Nullable; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.model.CommunityRest; import org.dspace.app.rest.projection.Projection; import org.dspace.content.Community; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/CommunityRestRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/CommunityRestRepository.java index 7d060319d911..0d4e6be133e8 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/CommunityRestRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/CommunityRestRepository.java @@ -13,11 +13,11 @@ import java.util.List; import java.util.SortedMap; import java.util.UUID; -import javax.servlet.ServletInputStream; -import javax.servlet.http.HttpServletRequest; import com.fasterxml.jackson.databind.JsonNode; import com.fasterxml.jackson.databind.ObjectMapper; +import jakarta.servlet.ServletInputStream; +import jakarta.servlet.http.HttpServletRequest; import org.apache.commons.lang3.StringUtils; import org.apache.logging.log4j.Logger; import org.dspace.app.rest.Parameter; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/CommunitySubcommunityLinkRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/CommunitySubcommunityLinkRepository.java index a577e97f98e7..e47e684080cb 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/CommunitySubcommunityLinkRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/CommunitySubcommunityLinkRepository.java @@ -12,9 +12,9 @@ import java.util.LinkedList; import java.util.List; import java.util.UUID; -import javax.annotation.Nullable; -import javax.servlet.http.HttpServletRequest; +import jakarta.annotation.Nullable; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.model.CommunityRest; import org.dspace.app.rest.projection.Projection; import org.dspace.content.Community; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/DSpaceRestRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/DSpaceRestRepository.java index a93f5e55dc02..74beeb3dac84 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/DSpaceRestRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/DSpaceRestRepository.java @@ -14,9 +14,9 @@ import java.util.List; import java.util.Optional; import java.util.UUID; -import javax.servlet.http.HttpServletRequest; import com.fasterxml.jackson.databind.JsonNode; +import jakarta.servlet.http.HttpServletRequest; import org.apache.logging.log4j.Logger; import org.dspace.app.rest.exception.DSpaceBadRequestException; import org.dspace.app.rest.exception.RESTAuthorizationException; @@ -34,8 +34,8 @@ import org.springframework.data.domain.Page; import org.springframework.data.domain.Pageable; import org.springframework.data.domain.Sort; +import org.springframework.data.repository.CrudRepository; import org.springframework.data.repository.PagingAndSortingRepository; -import org.springframework.security.access.prepost.PreAuthorize; import org.springframework.web.multipart.MultipartFile; /** @@ -48,7 +48,7 @@ */ public abstract class DSpaceRestRepository extends AbstractDSpaceRestRepository - implements PagingAndSortingRepository, BeanNameAware { + implements CrudRepository, PagingAndSortingRepository, BeanNameAware { private static final Logger log = org.apache.logging.log4j.LogManager.getLogger(DSpaceRestRepository.class); @@ -152,7 +152,6 @@ public Optional findById(ID id) { * the rest object id * @return the REST object identified by its ID */ - @PreAuthorize("hasAuthority('ADMIN')") public abstract T findOne(Context context, ID id); @Override diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/EPersonGroupLinkRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/EPersonGroupLinkRepository.java index af38584c1fe0..5825fa003e93 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/EPersonGroupLinkRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/EPersonGroupLinkRepository.java @@ -9,9 +9,9 @@ import java.sql.SQLException; import java.util.UUID; -import javax.annotation.Nullable; -import javax.servlet.http.HttpServletRequest; +import jakarta.annotation.Nullable; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.model.EPersonRest; import org.dspace.app.rest.model.GroupRest; import org.dspace.app.rest.projection.Projection; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/EPersonRestRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/EPersonRestRepository.java index b3f82d846478..cb11a1a7cfeb 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/EPersonRestRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/EPersonRestRepository.java @@ -12,10 +12,10 @@ import java.util.Arrays; import java.util.List; import java.util.UUID; -import javax.servlet.http.HttpServletRequest; import com.fasterxml.jackson.databind.ObjectMapper; import org.apache.commons.collections4.CollectionUtils; +import jakarta.servlet.http.HttpServletRequest; import org.apache.commons.lang3.StringUtils; import org.apache.logging.log4j.LogManager; import org.apache.logging.log4j.Logger; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/EntityTypeRelationshipLinkRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/EntityTypeRelationshipLinkRepository.java index cea27f58300b..8b30f8643513 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/EntityTypeRelationshipLinkRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/EntityTypeRelationshipLinkRepository.java @@ -9,9 +9,9 @@ import java.sql.SQLException; import java.util.List; import java.util.Objects; -import javax.annotation.Nullable; -import javax.servlet.http.HttpServletRequest; +import jakarta.annotation.Nullable; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.model.EntityTypeRest; import org.dspace.app.rest.model.RelationshipTypeRest; import org.dspace.app.rest.projection.Projection; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ExternalSourceEntityTypeLinkRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ExternalSourceEntityTypeLinkRepository.java index 21e87b44d00f..4e371f44257a 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ExternalSourceEntityTypeLinkRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ExternalSourceEntityTypeLinkRepository.java @@ -10,9 +10,9 @@ import java.util.Collections; import java.util.List; import java.util.Objects; -import javax.annotation.Nullable; -import javax.servlet.http.HttpServletRequest; +import jakarta.annotation.Nullable; +import jakarta.servlet.http.HttpServletRequest; import org.apache.commons.collections4.CollectionUtils; import org.dspace.app.rest.model.EntityTypeRest; import org.dspace.app.rest.model.ExternalSourceRest; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/FeedbackRestRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/FeedbackRestRepository.java index aee8cf60054a..2db412e5de74 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/FeedbackRestRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/FeedbackRestRepository.java @@ -8,10 +8,10 @@ package org.dspace.app.rest.repository; import java.io.IOException; import java.sql.SQLException; -import javax.mail.MessagingException; -import javax.servlet.http.HttpServletRequest; import com.fasterxml.jackson.databind.ObjectMapper; +import jakarta.mail.MessagingException; +import jakarta.servlet.http.HttpServletRequest; import org.apache.commons.lang.StringUtils; import org.dspace.app.rest.exception.DSpaceBadRequestException; import org.dspace.app.rest.exception.DSpaceFeedbackNotFoundException; @@ -79,8 +79,14 @@ protected FeedbackRest createAndReturn(Context context) throws AuthorizeExceptio throw new DSpaceBadRequestException("e-mail and message fields are mandatory!"); } + String pageUrl = feedbackRest.getPage(); + String urlPrefix = configurationService.getProperty("dspace.ui.url"); + if (StringUtils.isNotBlank(pageUrl) && ! StringUtils.startsWith(pageUrl, urlPrefix)) { + throw new DSpaceBadRequestException("unexpected page url was submitted"); + } + try { - feedbackService.sendEmail(context, req, recipientEmail, senderEmail, message, feedbackRest.getPage()); + feedbackService.sendEmail(context, req, recipientEmail, senderEmail, message, pageUrl); } catch (IOException | MessagingException e) { throw new RuntimeException(e.getMessage(), e); } diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/GroupEPersonLinkRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/GroupEPersonLinkRepository.java index 965d13aa7be6..d1ec7f693e7a 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/GroupEPersonLinkRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/GroupEPersonLinkRepository.java @@ -11,9 +11,9 @@ import java.util.List; import java.util.Set; import java.util.UUID; -import javax.annotation.Nullable; -import javax.servlet.http.HttpServletRequest; +import jakarta.annotation.Nullable; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.model.GroupRest; import org.dspace.app.rest.projection.Projection; import org.dspace.core.Context; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/GroupGroupLinkRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/GroupGroupLinkRepository.java index 721f69ed90ba..36f0c47374d2 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/GroupGroupLinkRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/GroupGroupLinkRepository.java @@ -10,9 +10,9 @@ import java.sql.SQLException; import java.util.List; import java.util.UUID; -import javax.annotation.Nullable; -import javax.servlet.http.HttpServletRequest; +import jakarta.annotation.Nullable; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.model.GroupRest; import org.dspace.app.rest.projection.Projection; import org.dspace.core.Context; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/GroupParentObjectLinkRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/GroupParentObjectLinkRepository.java index 8ce43e4af8f6..973d695d6604 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/GroupParentObjectLinkRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/GroupParentObjectLinkRepository.java @@ -9,9 +9,9 @@ import java.sql.SQLException; import java.util.UUID; -import javax.annotation.Nullable; -import javax.servlet.http.HttpServletRequest; +import jakarta.annotation.Nullable; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.model.DSpaceObjectRest; import org.dspace.app.rest.model.GroupRest; import org.dspace.app.rest.projection.Projection; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/GroupRestRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/GroupRestRepository.java index 7f16e5c43b75..160f838741ae 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/GroupRestRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/GroupRestRepository.java @@ -13,9 +13,9 @@ import java.sql.SQLException; import java.util.List; import java.util.UUID; -import javax.servlet.http.HttpServletRequest; import com.fasterxml.jackson.databind.ObjectMapper; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.Parameter; import org.dspace.app.rest.SearchRestMethod; import org.dspace.app.rest.converter.MetadataConverter; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/HarvestedCollectionRestRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/HarvestedCollectionRestRepository.java index d7f12a1813bd..07a7d678854a 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/HarvestedCollectionRestRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/HarvestedCollectionRestRepository.java @@ -13,10 +13,10 @@ import java.util.Arrays; import java.util.List; import java.util.Map; -import javax.servlet.ServletInputStream; -import javax.servlet.http.HttpServletRequest; import com.fasterxml.jackson.databind.ObjectMapper; +import jakarta.servlet.ServletInputStream; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.converter.HarvestedCollectionConverter; import org.dspace.app.rest.exception.UnprocessableEntityException; import org.dspace.app.rest.model.HarvestTypeEnum; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/IdentifierRestRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/IdentifierRestRepository.java index 204401d69a8c..7e8e8e2d8917 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/IdentifierRestRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/IdentifierRestRepository.java @@ -16,10 +16,10 @@ import java.util.Arrays; import java.util.List; import java.util.UUID; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; -import javax.ws.rs.NotSupportedException; +import jakarta.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletResponse; +import jakarta.ws.rs.NotSupportedException; import org.dspace.app.rest.DiscoverableEndpointsService; import org.dspace.app.rest.Parameter; import org.dspace.app.rest.SearchRestMethod; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ItemAccessStatusLinkRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ItemAccessStatusLinkRepository.java index 83e720a413ef..975171fba3c3 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ItemAccessStatusLinkRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ItemAccessStatusLinkRepository.java @@ -10,9 +10,9 @@ import java.sql.SQLException; import java.util.UUID; -import javax.annotation.Nullable; -import javax.servlet.http.HttpServletRequest; +import jakarta.annotation.Nullable; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.access.status.service.AccessStatusService; import org.dspace.app.rest.model.AccessStatusRest; import org.dspace.app.rest.model.ItemRest; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ItemBundleLinkRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ItemBundleLinkRepository.java index 19efe5e8420e..a6089c2331e9 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ItemBundleLinkRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ItemBundleLinkRepository.java @@ -9,9 +9,9 @@ import java.sql.SQLException; import java.util.UUID; -import javax.annotation.Nullable; -import javax.servlet.http.HttpServletRequest; +import jakarta.annotation.Nullable; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.model.BundleRest; import org.dspace.app.rest.model.ItemRest; import org.dspace.app.rest.projection.Projection; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ItemIdentifierLinkRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ItemIdentifierLinkRepository.java index 2cc7a62174ae..e2ad964bf43d 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ItemIdentifierLinkRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ItemIdentifierLinkRepository.java @@ -12,9 +12,9 @@ import java.util.ArrayList; import java.util.List; import java.util.UUID; -import javax.annotation.Nullable; -import javax.servlet.http.HttpServletRequest; +import jakarta.annotation.Nullable; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.model.IdentifierRest; import org.dspace.app.rest.model.IdentifiersRest; import org.dspace.app.rest.model.ItemRest; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ItemMappedCollectionLinkRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ItemMappedCollectionLinkRepository.java index 382b1a3b93f7..41e438427cae 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ItemMappedCollectionLinkRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ItemMappedCollectionLinkRepository.java @@ -11,9 +11,9 @@ import java.util.List; import java.util.UUID; import java.util.stream.Collectors; -import javax.annotation.Nullable; -import javax.servlet.http.HttpServletRequest; +import jakarta.annotation.Nullable; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.model.CollectionRest; import org.dspace.app.rest.model.ItemRest; import org.dspace.app.rest.projection.Projection; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ItemOwningCollectionLinkRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ItemOwningCollectionLinkRepository.java index 22c82c4d3dcf..b41ace1dd307 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ItemOwningCollectionLinkRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ItemOwningCollectionLinkRepository.java @@ -9,9 +9,9 @@ import java.sql.SQLException; import java.util.UUID; -import javax.annotation.Nullable; -import javax.servlet.http.HttpServletRequest; +import jakarta.annotation.Nullable; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.model.CollectionRest; import org.dspace.app.rest.model.ItemRest; import org.dspace.app.rest.projection.Projection; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ItemRelationshipLinkRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ItemRelationshipLinkRepository.java index c5f63ab5a887..5ae8179d0bd0 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ItemRelationshipLinkRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ItemRelationshipLinkRepository.java @@ -10,9 +10,9 @@ import java.sql.SQLException; import java.util.List; import java.util.UUID; -import javax.annotation.Nullable; -import javax.servlet.http.HttpServletRequest; +import jakarta.annotation.Nullable; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.model.ItemRest; import org.dspace.app.rest.model.RelationshipRest; import org.dspace.app.rest.projection.Projection; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ItemRestRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ItemRestRepository.java index 9b3a2e9175da..65ba9baed380 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ItemRestRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ItemRestRepository.java @@ -18,11 +18,11 @@ import java.util.Objects; import java.util.Optional; import java.util.UUID; -import javax.servlet.ServletInputStream; -import javax.servlet.http.HttpServletRequest; import com.fasterxml.jackson.databind.JsonNode; import com.fasterxml.jackson.databind.ObjectMapper; +import jakarta.servlet.ServletInputStream; +import jakarta.servlet.http.HttpServletRequest; import org.apache.commons.lang3.StringUtils; import org.apache.logging.log4j.LogManager; import org.apache.logging.log4j.Logger; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ItemTemplateItemOfLinkRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ItemTemplateItemOfLinkRepository.java index fb7db2b38de7..45ac2420fa7f 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ItemTemplateItemOfLinkRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ItemTemplateItemOfLinkRepository.java @@ -9,9 +9,9 @@ import java.sql.SQLException; import java.util.UUID; -import javax.annotation.Nullable; -import javax.servlet.http.HttpServletRequest; +import jakarta.annotation.Nullable; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.model.CollectionRest; import org.dspace.app.rest.model.ItemRest; import org.dspace.app.rest.projection.Projection; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ItemThumbnailLinkRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ItemThumbnailLinkRepository.java index 2c9596b03162..a84c5e15b62c 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ItemThumbnailLinkRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ItemThumbnailLinkRepository.java @@ -10,9 +10,9 @@ import java.sql.SQLException; import java.util.UUID; -import javax.annotation.Nullable; -import javax.servlet.http.HttpServletRequest; +import jakarta.annotation.Nullable; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.model.BitstreamRest; import org.dspace.app.rest.model.ItemRest; import org.dspace.app.rest.projection.Projection; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ItemVersionLinkRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ItemVersionLinkRepository.java index 5e489d5ebf0c..abf107b82241 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ItemVersionLinkRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ItemVersionLinkRepository.java @@ -9,9 +9,9 @@ import java.sql.SQLException; import java.util.UUID; -import javax.annotation.Nullable; -import javax.servlet.http.HttpServletRequest; +import jakarta.annotation.Nullable; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.model.ItemRest; import org.dspace.app.rest.model.VersionRest; import org.dspace.app.rest.projection.Projection; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/LDNMessageRestRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/LDNMessageRestRepository.java index 2151de0a2c3f..d28080ab36cd 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/LDNMessageRestRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/LDNMessageRestRepository.java @@ -8,8 +8,8 @@ package org.dspace.app.rest.repository; import java.sql.SQLException; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.ldn.LDNMessageEntity; import org.dspace.app.ldn.service.LDNMessageService; import org.dspace.app.rest.exception.MethodNotAllowedException; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/MetadataFieldRestRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/MetadataFieldRestRepository.java index a6e6bd34edd2..0d0bc1729a26 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/MetadataFieldRestRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/MetadataFieldRestRepository.java @@ -17,11 +17,11 @@ import java.util.Iterator; import java.util.List; import java.util.Objects; -import javax.servlet.http.HttpServletRequest; import com.fasterxml.jackson.core.JsonProcessingException; import com.fasterxml.jackson.databind.JsonNode; import com.fasterxml.jackson.databind.ObjectMapper; +import jakarta.servlet.http.HttpServletRequest; import org.apache.commons.lang3.StringUtils; import org.apache.logging.log4j.Logger; import org.dspace.app.rest.Parameter; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/MetadataSchemaRestRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/MetadataSchemaRestRepository.java index c57d33b1504d..d7338dc31419 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/MetadataSchemaRestRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/MetadataSchemaRestRepository.java @@ -13,11 +13,11 @@ import java.sql.SQLException; import java.util.List; import java.util.Objects; -import javax.servlet.http.HttpServletRequest; import com.fasterxml.jackson.core.JsonProcessingException; import com.fasterxml.jackson.databind.JsonNode; import com.fasterxml.jackson.databind.ObjectMapper; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.exception.DSpaceBadRequestException; import org.dspace.app.rest.exception.UnprocessableEntityException; import org.dspace.app.rest.model.MetadataSchemaRest; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/NotifyServiceRestRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/NotifyServiceRestRepository.java index c3b15ad77f20..bff0abc961d9 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/NotifyServiceRestRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/NotifyServiceRestRepository.java @@ -13,10 +13,11 @@ import java.sql.SQLException; import java.util.ArrayList; import java.util.List; -import javax.servlet.ServletInputStream; -import javax.servlet.http.HttpServletRequest; +import java.util.stream.Collectors; import com.fasterxml.jackson.databind.ObjectMapper; +import jakarta.servlet.ServletInputStream; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.ldn.NotifyServiceEntity; import org.dspace.app.ldn.NotifyServiceInboundPattern; import org.dspace.app.ldn.service.NotifyService; @@ -106,8 +107,7 @@ protected NotifyServiceRest createAndReturn(Context context) throws AuthorizeExc notifyServiceRest.getLdnUrl())); } - NotifyServiceEntity notifyServiceEntity = notifyService.create(context); - notifyServiceEntity.setName(notifyServiceRest.getName()); + NotifyServiceEntity notifyServiceEntity = notifyService.create(context, notifyServiceRest.getName()); notifyServiceEntity.setDescription(notifyServiceRest.getDescription()); notifyServiceEntity.setUrl(notifyServiceRest.getUrl()); notifyServiceEntity.setLdnUrl(notifyServiceRest.getLdnUrl()); @@ -193,7 +193,10 @@ public Page findManualServicesByInboundPattern( Pageable pageable) { try { List notifyServiceEntities = - notifyService.findManualServicesByInboundPattern(obtainContext(), pattern); + notifyService.findManualServicesByInboundPattern(obtainContext(), pattern) + .stream() + .filter(NotifyServiceEntity::isEnabled) + .collect(Collectors.toList()); return converter.toRestPage(notifyServiceEntities, pageable, utils.obtainProjection()); } catch (SQLException e) { diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/OrcidHistoryRestRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/OrcidHistoryRestRepository.java index e804654907d6..77d7ba23611e 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/OrcidHistoryRestRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/OrcidHistoryRestRepository.java @@ -9,8 +9,8 @@ import java.sql.SQLException; import java.util.List; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.exception.RepositoryMethodNotImplementedException; import org.dspace.app.rest.model.OrcidHistoryRest; import org.dspace.app.rest.repository.handler.service.UriListHandlerService; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/PoolTaskStepLinkRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/PoolTaskStepLinkRepository.java index 9e1a41cb92b9..9af6a5730918 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/PoolTaskStepLinkRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/PoolTaskStepLinkRepository.java @@ -8,9 +8,9 @@ package org.dspace.app.rest.repository; import java.sql.SQLException; -import javax.annotation.Nullable; -import javax.servlet.http.HttpServletRequest; +import jakarta.annotation.Nullable; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.model.PoolTaskRest; import org.dspace.app.rest.model.WorkflowStepRest; import org.dspace.app.rest.projection.Projection; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ProcessFileTypesLinkRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ProcessFileTypesLinkRepository.java index 1727e720a8da..cb83379d8b08 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ProcessFileTypesLinkRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ProcessFileTypesLinkRepository.java @@ -9,9 +9,9 @@ import java.sql.SQLException; import java.util.List; -import javax.annotation.Nullable; -import javax.servlet.http.HttpServletRequest; +import jakarta.annotation.Nullable; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.model.ProcessFileTypesRest; import org.dspace.app.rest.model.ProcessRest; import org.dspace.app.rest.projection.Projection; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ProcessFilesLinkRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ProcessFilesLinkRepository.java index e09a47ad7ceb..d981a9c7976b 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ProcessFilesLinkRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ProcessFilesLinkRepository.java @@ -9,9 +9,9 @@ import java.sql.SQLException; import java.util.List; -import javax.annotation.Nullable; -import javax.servlet.http.HttpServletRequest; +import jakarta.annotation.Nullable; +import jakarta.servlet.http.HttpServletRequest; import org.apache.logging.log4j.LogManager; import org.apache.logging.log4j.Logger; import org.dspace.app.rest.model.BitstreamRest; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ProcessOutputLinkRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ProcessOutputLinkRepository.java index 632e7d7c94e0..016450c92569 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ProcessOutputLinkRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ProcessOutputLinkRepository.java @@ -8,9 +8,9 @@ package org.dspace.app.rest.repository; import java.sql.SQLException; -import javax.annotation.Nullable; -import javax.servlet.http.HttpServletRequest; +import jakarta.annotation.Nullable; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.model.BitstreamRest; import org.dspace.app.rest.model.ProcessRest; import org.dspace.app.rest.projection.Projection; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/QAEventRelatedLinkRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/QAEventRelatedLinkRepository.java index a3702980a021..d3d6b965c84e 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/QAEventRelatedLinkRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/QAEventRelatedLinkRepository.java @@ -9,9 +9,9 @@ import java.sql.SQLException; import java.util.UUID; -import javax.annotation.Nullable; -import javax.servlet.http.HttpServletRequest; +import jakarta.annotation.Nullable; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.model.ItemRest; import org.dspace.app.rest.model.QAEventRest; import org.dspace.app.rest.projection.Projection; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/QAEventRestRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/QAEventRestRepository.java index 941ceba243bb..0c6abb78cb9e 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/QAEventRestRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/QAEventRestRepository.java @@ -12,10 +12,10 @@ import java.util.List; import java.util.Objects; import java.util.UUID; -import javax.servlet.ServletRequest; -import javax.servlet.http.HttpServletRequest; import com.fasterxml.jackson.databind.ObjectMapper; +import jakarta.servlet.ServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.apache.commons.lang.StringUtils; import org.dspace.app.rest.Parameter; import org.dspace.app.rest.SearchRestMethod; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/QAEventTargetLinkRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/QAEventTargetLinkRepository.java index 5e664c3a20d7..3d6bf2cd91e2 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/QAEventTargetLinkRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/QAEventTargetLinkRepository.java @@ -9,9 +9,9 @@ import java.sql.SQLException; import java.util.UUID; -import javax.annotation.Nullable; -import javax.servlet.http.HttpServletRequest; +import jakarta.annotation.Nullable; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.model.ItemRest; import org.dspace.app.rest.model.QAEventRest; import org.dspace.app.rest.projection.Projection; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/QAEventTopicLinkRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/QAEventTopicLinkRepository.java index cdc4a1f239f8..296fb50560d6 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/QAEventTopicLinkRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/QAEventTopicLinkRepository.java @@ -7,9 +7,8 @@ */ package org.dspace.app.rest.repository; -import javax.annotation.Nullable; -import javax.servlet.http.HttpServletRequest; - +import jakarta.annotation.Nullable; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.model.QAEventRest; import org.dspace.app.rest.model.QATopicRest; import org.dspace.app.rest.projection.Projection; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/RegistrationRestRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/RegistrationRestRepository.java index 78a53e2a5a85..ce8d090788bf 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/RegistrationRestRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/RegistrationRestRepository.java @@ -14,12 +14,13 @@ import java.util.List; import java.util.Objects; import java.util.UUID; -import javax.mail.MessagingException; -import javax.servlet.ServletInputStream; -import javax.servlet.http.HttpServletRequest; -import javax.ws.rs.BadRequestException; import com.fasterxml.jackson.databind.ObjectMapper; +import jakarta.mail.MessagingException; +import jakarta.servlet.ServletInputStream; +import jakarta.servlet.http.HttpServletRequest; +import jakarta.ws.rs.BadRequestException; + import org.apache.commons.lang3.StringUtils; import org.apache.logging.log4j.LogManager; import org.apache.logging.log4j.Logger; @@ -55,6 +56,7 @@ import org.springframework.data.domain.Pageable; import org.springframework.data.rest.webmvc.ResourceNotFoundException; import org.springframework.security.access.AccessDeniedException; +import org.springframework.security.access.prepost.PreAuthorize; import org.springframework.stereotype.Component; /** @@ -104,6 +106,7 @@ public class RegistrationRestRepository extends DSpaceRestRepository resourcePatch; @Override + @PreAuthorize("permitAll()") public RegistrationRest findOne(Context context, Integer integer) { throw new RepositoryMethodNotImplementedException("No implementation found; Method not allowed!", ""); } diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/RelationshipRestRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/RelationshipRestRepository.java index fb24c607fe88..14b16f9a522d 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/RelationshipRestRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/RelationshipRestRepository.java @@ -15,10 +15,10 @@ import java.util.Objects; import java.util.Set; import java.util.UUID; -import javax.servlet.http.HttpServletRequest; import com.fasterxml.jackson.databind.JsonNode; import com.fasterxml.jackson.databind.ObjectMapper; +import jakarta.servlet.http.HttpServletRequest; import org.apache.logging.log4j.LogManager; import org.apache.logging.log4j.Logger; import org.dspace.app.rest.Parameter; @@ -29,9 +29,11 @@ import org.dspace.authorize.AuthorizeException; import org.dspace.authorize.service.AuthorizeService; import org.dspace.content.DSpaceObject; +import org.dspace.content.EntityType; import org.dspace.content.Item; import org.dspace.content.Relationship; import org.dspace.content.RelationshipType; +import org.dspace.content.service.EntityTypeService; import org.dspace.content.service.ItemService; import org.dspace.content.service.RelationshipService; import org.dspace.content.service.RelationshipTypeService; @@ -59,6 +61,9 @@ public class RelationshipRestRepository extends DSpaceRestRepository findByLabel(@Parameter(value = "label", required = true) String label, @Parameter(value = "dso", required = false) UUID dsoId, + @Parameter(value = "relatedEntityType") String relatedEntityType, Pageable pageable) throws SQLException { Context context = obtainContext(); @@ -377,14 +384,28 @@ public Page findByLabel(@Parameter(value = "label", required = if (item == null) { throw new ResourceNotFoundException("The request DSO with id: " + dsoId + " was not found"); } + + EntityType dsoEntityType = itemService.getEntityType(context, item); + + if (dsoEntityType == null) { + throw new UnprocessableEntityException(String.format( + "The request DSO with id: %s doesn't have an entity type", dsoId)); + } + for (RelationshipType relationshipType : relationshipTypeList) { - boolean isLeft = false; - if (relationshipType.getLeftwardType().equalsIgnoreCase(label)) { - isLeft = true; + if (relatedEntityType == null || + relationshipType.getRightType().getLabel().equals(dsoEntityType.getLabel()) && + relationshipType.getLeftType().getLabel().equals(relatedEntityType) || + relationshipType.getRightType().getLabel().equals(relatedEntityType) && + relationshipType.getLeftType().getLabel().equals(dsoEntityType.getLabel())) { + boolean isLeft = relationshipType.getLeftwardType().equalsIgnoreCase(label); + total += + relationshipService.countByItemAndRelationshipType(context, item, relationshipType, isLeft); + relationships.addAll( + relationshipService.findByItemAndRelationshipType(context, item, relationshipType, + isLeft, pageable.getPageSize(), + Math.toIntExact(pageable.getOffset()))); } - total += relationshipService.countByItemAndRelationshipType(context, item, relationshipType, isLeft); - relationships.addAll(relationshipService.findByItemAndRelationshipType(context, item, relationshipType, - isLeft, pageable.getPageSize(), Math.toIntExact(pageable.getOffset()))); } } else { for (RelationshipType relationshipType : relationshipTypeList) { @@ -402,7 +423,7 @@ public Page findByLabel(@Parameter(value = "label", required = * of potentially related items we need to know which of these other items * are already in a specific relationship with the focus item and, * by exclusion which ones are not yet related. - * + * * @param typeId The relationship type id to apply as a filter to the returned relationships * @param label The name of the relation as defined from the side of the 'focusItem' * @param focusUUID The uuid of the item to be checked on the side defined by 'relationshipLabel' diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/RelationshipTypeRelationshipLinkRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/RelationshipTypeRelationshipLinkRepository.java index 46cf6ac3071a..9e1048929d9a 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/RelationshipTypeRelationshipLinkRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/RelationshipTypeRelationshipLinkRepository.java @@ -8,9 +8,9 @@ package org.dspace.app.rest.repository; import java.sql.SQLException; -import javax.annotation.Nullable; -import javax.servlet.http.HttpServletRequest; +import jakarta.annotation.Nullable; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.model.RelationshipRest; import org.dspace.app.rest.model.RelationshipTypeRest; import org.dspace.app.rest.projection.Projection; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/RequestItemRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/RequestItemRepository.java index 1d76986856e0..6bfae8ed3515 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/RequestItemRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/RequestItemRepository.java @@ -17,10 +17,10 @@ import java.sql.SQLException; import java.util.Date; import java.util.UUID; -import javax.servlet.http.HttpServletRequest; import com.fasterxml.jackson.databind.JsonNode; import com.fasterxml.jackson.databind.ObjectMapper; +import jakarta.servlet.http.HttpServletRequest; import org.apache.commons.validator.routines.EmailValidator; import org.apache.http.client.utils.URIBuilder; import org.apache.logging.log4j.LogManager; @@ -247,11 +247,15 @@ public RequestItemRest put(Context context, HttpServletRequest request, message = responseMessageNode.asText(); } + JsonNode responseSubjectNode = requestBody.findValue("subject"); + String subject = null; + if (responseSubjectNode != null && !responseSubjectNode.isNull()) { + subject = responseSubjectNode.asText(); + } ri.setDecision_date(new Date()); requestItemService.update(context, ri); // Send the response email - String subject = requestBody.findValue("subject").asText(); try { requestItemEmailNotifier.sendResponse(context, ri, subject, message); } catch (IOException ex) { diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ResearcherProfileEPersonLinkRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ResearcherProfileEPersonLinkRepository.java index 58bd9798a371..3f0a1e84b74c 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ResearcherProfileEPersonLinkRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ResearcherProfileEPersonLinkRepository.java @@ -9,9 +9,9 @@ import java.sql.SQLException; import java.util.UUID; -import javax.annotation.Nullable; -import javax.servlet.http.HttpServletRequest; +import jakarta.annotation.Nullable; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.model.EPersonRest; import org.dspace.app.rest.model.ResearcherProfileRest; import org.dspace.app.rest.projection.Projection; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ResearcherProfileItemLinkRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ResearcherProfileItemLinkRepository.java index 7aaedc05a2b3..c46f9dbf7c0d 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ResearcherProfileItemLinkRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ResearcherProfileItemLinkRepository.java @@ -9,9 +9,9 @@ import java.sql.SQLException; import java.util.UUID; -import javax.annotation.Nullable; -import javax.servlet.http.HttpServletRequest; +import jakarta.annotation.Nullable; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.model.ItemRest; import org.dspace.app.rest.model.ResearcherProfileRest; import org.dspace.app.rest.projection.Projection; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ResearcherProfileRestRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ResearcherProfileRestRepository.java index a2fc2f01beab..4212f01782d6 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ResearcherProfileRestRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ResearcherProfileRestRepository.java @@ -11,8 +11,8 @@ import java.sql.SQLException; import java.util.List; import java.util.UUID; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.apache.commons.collections.CollectionUtils; import org.dspace.app.rest.exception.DSpaceBadRequestException; import org.dspace.app.rest.exception.RepositoryMethodNotImplementedException; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ResourcePolicyRestRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ResourcePolicyRestRepository.java index cac3bcda87ea..5834a5b20cc3 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ResourcePolicyRestRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ResourcePolicyRestRepository.java @@ -12,9 +12,9 @@ import java.util.Arrays; import java.util.List; import java.util.UUID; -import javax.servlet.http.HttpServletRequest; import com.fasterxml.jackson.databind.ObjectMapper; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.DiscoverableEndpointsService; import org.dspace.app.rest.Parameter; import org.dspace.app.rest.SearchRestMethod; @@ -259,14 +259,6 @@ protected ResourcePolicyRest createAndReturn(Context context) throws AuthorizeEx if (dspaceObject == null) { throw new UnprocessableEntityException("DSpaceObject with this uuid: " + resourceUuid + " not found"); } - resourcePolicy = resourcePolicyService.create(context); - resourcePolicy.setRpType(resourcePolicyRest.getPolicyType()); - resourcePolicy.setdSpaceObject(dspaceObject); - resourcePolicy.setRpName(resourcePolicyRest.getName()); - resourcePolicy.setRpDescription(resourcePolicyRest.getDescription()); - resourcePolicy.setAction(Constants.getActionID(resourcePolicyRest.getAction())); - resourcePolicy.setStartDate(resourcePolicyRest.getStartDate()); - resourcePolicy.setEndDate(resourcePolicyRest.getEndDate()); if (epersonUuidStr != null) { try { @@ -275,12 +267,11 @@ protected ResourcePolicyRest createAndReturn(Context context) throws AuthorizeEx if (ePerson == null) { throw new UnprocessableEntityException("EPerson with uuid: " + epersonUuid + " not found"); } - resourcePolicy.setEPerson(ePerson); - resourcePolicyService.update(context, resourcePolicy); + resourcePolicy = resourcePolicyService.create(context, ePerson, null); + } catch (SQLException excSQL) { throw new RuntimeException(excSQL.getMessage(), excSQL); } - return converter.toRest(resourcePolicy, utils.obtainProjection()); } else { try { UUID groupUuid = UUID.fromString(groupUuidStr); @@ -288,13 +279,27 @@ protected ResourcePolicyRest createAndReturn(Context context) throws AuthorizeEx if (group == null) { throw new UnprocessableEntityException("Group with uuid: " + groupUuid + " not found"); } - resourcePolicy.setGroup(group); - resourcePolicyService.update(context, resourcePolicy); + resourcePolicy = resourcePolicyService.create(context, null, group); } catch (SQLException excSQL) { throw new RuntimeException(excSQL.getMessage(), excSQL); } + } + + if (resourcePolicy != null) { + + resourcePolicy.setRpType(resourcePolicyRest.getPolicyType()); + resourcePolicy.setdSpaceObject(dspaceObject); + resourcePolicy.setRpName(resourcePolicyRest.getName()); + resourcePolicy.setRpDescription(resourcePolicyRest.getDescription()); + resourcePolicy.setAction(Constants.getActionID(resourcePolicyRest.getAction())); + resourcePolicy.setStartDate(resourcePolicyRest.getStartDate()); + resourcePolicy.setEndDate(resourcePolicyRest.getEndDate()); + resourcePolicyService.update(context, resourcePolicy); return converter.toRest(resourcePolicy, utils.obtainProjection()); + } else { + throw new UnprocessableEntityException("A resource policy must contain a valid eperson or group"); } + } @Override diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/SearchEventRestRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/SearchEventRestRepository.java index 9bbc2b4c26c0..029047b1dca2 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/SearchEventRestRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/SearchEventRestRepository.java @@ -8,10 +8,10 @@ package org.dspace.app.rest.repository; import java.io.IOException; -import javax.servlet.ServletInputStream; -import javax.servlet.http.HttpServletRequest; import com.fasterxml.jackson.databind.ObjectMapper; +import jakarta.servlet.ServletInputStream; +import jakarta.servlet.http.HttpServletRequest; import org.apache.commons.lang3.StringUtils; import org.dspace.app.rest.converter.SearchEventConverter; import org.dspace.app.rest.exception.DSpaceBadRequestException; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/SiteRestRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/SiteRestRepository.java index d4ca14f6da5c..1d31b989672e 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/SiteRestRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/SiteRestRepository.java @@ -11,8 +11,8 @@ import java.util.Arrays; import java.util.List; import java.util.UUID; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.model.SiteRest; import org.dspace.app.rest.model.patch.Patch; import org.dspace.authorize.AuthorizeException; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/SubscriptionDSpaceObjectLinkRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/SubscriptionDSpaceObjectLinkRepository.java index f35b6230e5c4..7e2e32eb9e27 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/SubscriptionDSpaceObjectLinkRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/SubscriptionDSpaceObjectLinkRepository.java @@ -9,9 +9,9 @@ import java.sql.SQLException; import java.util.Objects; -import javax.annotation.Nullable; -import javax.servlet.http.HttpServletRequest; +import jakarta.annotation.Nullable; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.model.DSpaceObjectRest; import org.dspace.app.rest.model.SubscriptionRest; import org.dspace.app.rest.projection.Projection; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/SubscriptionEPersonLinkRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/SubscriptionEPersonLinkRepository.java index 96d07ee98802..25144810bcf9 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/SubscriptionEPersonLinkRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/SubscriptionEPersonLinkRepository.java @@ -9,9 +9,9 @@ import java.sql.SQLException; import java.util.Objects; -import javax.annotation.Nullable; -import javax.servlet.http.HttpServletRequest; +import jakarta.annotation.Nullable; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.model.EPersonRest; import org.dspace.app.rest.model.SubscriptionRest; import org.dspace.app.rest.projection.Projection; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/SubscriptionRestRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/SubscriptionRestRepository.java index 811d0b00a9f6..9cce08c9660c 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/SubscriptionRestRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/SubscriptionRestRepository.java @@ -18,11 +18,11 @@ import java.util.List; import java.util.Objects; import java.util.UUID; -import javax.servlet.ServletInputStream; -import javax.servlet.http.HttpServletRequest; import com.fasterxml.jackson.databind.JsonNode; import com.fasterxml.jackson.databind.ObjectMapper; +import jakarta.servlet.ServletInputStream; +import jakarta.servlet.http.HttpServletRequest; import org.apache.commons.collections.CollectionUtils; import org.apache.commons.lang3.StringUtils; import org.dspace.app.rest.DiscoverableEndpointsService; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/SuggestionTargetTargetLinkRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/SuggestionTargetTargetLinkRepository.java index e9b0fb6aa766..34d006cef198 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/SuggestionTargetTargetLinkRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/SuggestionTargetTargetLinkRepository.java @@ -9,9 +9,9 @@ import java.sql.SQLException; import java.util.UUID; -import javax.annotation.Nullable; -import javax.servlet.http.HttpServletRequest; +import jakarta.annotation.Nullable; +import jakarta.servlet.http.HttpServletRequest; import org.apache.commons.lang3.StringUtils; import org.dspace.app.rest.model.ItemRest; import org.dspace.app.rest.model.SuggestionTargetRest; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/SupervisionOrderRestRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/SupervisionOrderRestRepository.java index 56cdecdd4669..0f47aee3fdff 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/SupervisionOrderRestRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/SupervisionOrderRestRepository.java @@ -15,8 +15,8 @@ import java.util.Objects; import java.util.UUID; import java.util.stream.Collectors; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.apache.commons.lang3.StringUtils; import org.apache.logging.log4j.Logger; import org.dspace.app.exception.ResourceAlreadyExistsException; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/SystemWideAlertRestRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/SystemWideAlertRestRepository.java index a5b0dfc0fc34..b3df9b6a939c 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/SystemWideAlertRestRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/SystemWideAlertRestRepository.java @@ -12,12 +12,12 @@ import java.io.IOException; import java.sql.SQLException; import java.util.List; -import javax.servlet.ServletInputStream; -import javax.servlet.http.HttpServletRequest; import com.fasterxml.jackson.core.JsonProcessingException; import com.fasterxml.jackson.databind.JsonNode; import com.fasterxml.jackson.databind.ObjectMapper; +import jakarta.servlet.ServletInputStream; +import jakarta.servlet.http.HttpServletRequest; import org.apache.logging.log4j.LogManager; import org.apache.logging.log4j.Logger; import org.dspace.alerts.AllowSessionsEnum; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/VersionHistoryDraftVersionLinkRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/VersionHistoryDraftVersionLinkRepository.java index 9fe2fe84a735..56a413b7e864 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/VersionHistoryDraftVersionLinkRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/VersionHistoryDraftVersionLinkRepository.java @@ -8,9 +8,9 @@ package org.dspace.app.rest.repository; import java.sql.SQLException; import java.util.Objects; -import javax.annotation.Nullable; -import javax.servlet.http.HttpServletRequest; +import jakarta.annotation.Nullable; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.exception.DSpaceBadRequestException; import org.dspace.app.rest.model.AInprogressSubmissionRest; import org.dspace.app.rest.model.VersionHistoryRest; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/VersionHistoryLinkRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/VersionHistoryLinkRepository.java index f009457e698c..46e751ad1e0b 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/VersionHistoryLinkRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/VersionHistoryLinkRepository.java @@ -8,9 +8,9 @@ package org.dspace.app.rest.repository; import java.sql.SQLException; -import javax.annotation.Nullable; -import javax.servlet.http.HttpServletRequest; +import jakarta.annotation.Nullable; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.model.VersionHistoryRest; import org.dspace.app.rest.model.VersionRest; import org.dspace.app.rest.projection.Projection; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/VersionItemLinkRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/VersionItemLinkRepository.java index b89b7b0c6256..d171492e9fa1 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/VersionItemLinkRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/VersionItemLinkRepository.java @@ -8,9 +8,9 @@ package org.dspace.app.rest.repository; import java.sql.SQLException; -import javax.annotation.Nullable; -import javax.servlet.http.HttpServletRequest; +import jakarta.annotation.Nullable; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.model.ItemRest; import org.dspace.app.rest.model.VersionRest; import org.dspace.app.rest.projection.Projection; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/VersionRestRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/VersionRestRepository.java index 288bf973f98d..660c981a7266 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/VersionRestRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/VersionRestRepository.java @@ -10,8 +10,8 @@ import java.sql.SQLException; import java.util.List; import java.util.Objects; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.apache.commons.lang.StringUtils; import org.apache.logging.log4j.Logger; import org.dspace.app.rest.converter.ConverterService; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/VersionsLinkRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/VersionsLinkRepository.java index ea4f74c6955e..f7b0bb902f69 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/VersionsLinkRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/VersionsLinkRepository.java @@ -9,9 +9,9 @@ import java.sql.SQLException; import java.util.List; -import javax.annotation.Nullable; -import javax.servlet.http.HttpServletRequest; +import jakarta.annotation.Nullable; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.model.VersionHistoryRest; import org.dspace.app.rest.model.VersionRest; import org.dspace.app.rest.projection.Projection; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ViewEventRestRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ViewEventRestRepository.java index 388db2155150..647b1109c83a 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ViewEventRestRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ViewEventRestRepository.java @@ -13,10 +13,10 @@ import java.util.List; import java.util.Locale; import java.util.UUID; -import javax.servlet.ServletInputStream; -import javax.servlet.http.HttpServletRequest; import com.fasterxml.jackson.databind.ObjectMapper; +import jakarta.servlet.ServletInputStream; +import jakarta.servlet.http.HttpServletRequest; import org.apache.commons.lang3.StringUtils; import org.dspace.app.rest.exception.DSpaceBadRequestException; import org.dspace.app.rest.exception.UnprocessableEntityException; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/VocabularyEntryDetailsChildrenLinkRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/VocabularyEntryDetailsChildrenLinkRepository.java index 6f062f91206c..2cda615f01b7 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/VocabularyEntryDetailsChildrenLinkRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/VocabularyEntryDetailsChildrenLinkRepository.java @@ -9,9 +9,9 @@ import java.util.ArrayList; import java.util.List; -import javax.annotation.Nullable; -import javax.servlet.http.HttpServletRequest; +import jakarta.annotation.Nullable; +import jakarta.servlet.http.HttpServletRequest; import org.apache.commons.lang3.StringUtils; import org.dspace.app.rest.exception.LinkNotFoundException; import org.dspace.app.rest.model.VocabularyEntryDetailsRest; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/VocabularyEntryDetailsParentLinkRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/VocabularyEntryDetailsParentLinkRepository.java index 5bbfe3ff5453..08ce556535ca 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/VocabularyEntryDetailsParentLinkRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/VocabularyEntryDetailsParentLinkRepository.java @@ -7,10 +7,9 @@ */ package org.dspace.app.rest.repository; -import javax.annotation.Nullable; -import javax.servlet.http.HttpServletRequest; -import javax.ws.rs.NotFoundException; - +import jakarta.annotation.Nullable; +import jakarta.servlet.http.HttpServletRequest; +import jakarta.ws.rs.NotFoundException; import org.apache.commons.lang3.StringUtils; import org.dspace.app.rest.model.VocabularyEntryDetailsRest; import org.dspace.app.rest.model.VocabularyRest; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/VocabularyEntryLinkRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/VocabularyEntryLinkRepository.java index 9b9696d6a7d5..bae55592fc11 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/VocabularyEntryLinkRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/VocabularyEntryLinkRepository.java @@ -9,9 +9,9 @@ import java.util.ArrayList; import java.util.List; -import javax.annotation.Nullable; -import javax.servlet.http.HttpServletRequest; +import jakarta.annotation.Nullable; +import jakarta.servlet.http.HttpServletRequest; import org.apache.commons.lang3.BooleanUtils; import org.apache.commons.lang3.StringUtils; import org.dspace.app.rest.exception.UnprocessableEntityException; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/WorkflowItemCollectionLinkRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/WorkflowItemCollectionLinkRepository.java new file mode 100644 index 000000000000..09c7cc4c0f12 --- /dev/null +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/WorkflowItemCollectionLinkRepository.java @@ -0,0 +1,60 @@ +/** + * The contents of this file are subject to the license and copyright + * detailed in the LICENSE and NOTICE files at the root of the source + * tree and available online at + * + * http://www.dspace.org/license/ + */ +package org.dspace.app.rest.repository; + +import java.sql.SQLException; +import javax.annotation.Nullable; + +import jakarta.servlet.http.HttpServletRequest; +import org.dspace.app.rest.model.CollectionRest; +import org.dspace.app.rest.model.WorkflowItemRest; +import org.dspace.app.rest.projection.Projection; +import org.dspace.core.Context; +import org.dspace.workflow.WorkflowItem; +import org.dspace.xmlworkflow.storedcomponents.service.XmlWorkflowItemService; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.data.domain.Pageable; +import org.springframework.data.rest.webmvc.ResourceNotFoundException; +import org.springframework.security.access.prepost.PreAuthorize; +import org.springframework.stereotype.Component; + +/** + * Link repository for "collection" subresource of a workflow item. + */ +@Component(WorkflowItemRest.CATEGORY + "." + WorkflowItemRest.PLURAL_NAME + "." + WorkflowItemRest.COLLECTION) +public class WorkflowItemCollectionLinkRepository extends AbstractDSpaceRestRepository + implements LinkRestRepository { + + @Autowired + XmlWorkflowItemService wis; + + /** + * Retrieve the item for a workflow collection. + * + * @param request - The current request + * @param id - The workflow item ID for which to retrieve the collection + * @param optionalPageable - optional pageable object + * @param projection - the current projection + * @return the item for the workflow collection + */ + @PreAuthorize("hasPermission(#id, 'WORKFLOWITEM', 'READ')") + public CollectionRest getWorkflowItemCollection(@Nullable HttpServletRequest request, Integer id, + @Nullable Pageable optionalPageable, Projection projection) { + try { + Context context = obtainContext(); + WorkflowItem witem = wis.find(context, id); + if (witem == null) { + throw new ResourceNotFoundException("No such workflow item: " + id); + } + + return converter.toRest(witem.getCollection(), projection); + } catch (SQLException e) { + throw new RuntimeException(e); + } + } +} diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/WorkflowItemItemLinkRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/WorkflowItemItemLinkRepository.java new file mode 100644 index 000000000000..96b09c8d64ac --- /dev/null +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/WorkflowItemItemLinkRepository.java @@ -0,0 +1,60 @@ +/** + * The contents of this file are subject to the license and copyright + * detailed in the LICENSE and NOTICE files at the root of the source + * tree and available online at + * + * http://www.dspace.org/license/ + */ +package org.dspace.app.rest.repository; + +import java.sql.SQLException; +import javax.annotation.Nullable; + +import jakarta.servlet.http.HttpServletRequest; +import org.dspace.app.rest.model.ItemRest; +import org.dspace.app.rest.model.WorkflowItemRest; +import org.dspace.app.rest.projection.Projection; +import org.dspace.core.Context; +import org.dspace.workflow.WorkflowItem; +import org.dspace.xmlworkflow.storedcomponents.service.XmlWorkflowItemService; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.data.domain.Pageable; +import org.springframework.data.rest.webmvc.ResourceNotFoundException; +import org.springframework.security.access.prepost.PreAuthorize; +import org.springframework.stereotype.Component; + +/** + * Link repository for "item" subresource of a workflow item. + */ +@Component(WorkflowItemRest.CATEGORY + "." + WorkflowItemRest.PLURAL_NAME + "." + WorkflowItemRest.ITEM) +public class WorkflowItemItemLinkRepository extends AbstractDSpaceRestRepository + implements LinkRestRepository { + + @Autowired + XmlWorkflowItemService wis; + + /** + * Retrieve the item for a workflow item. + * + * @param request - The current request + * @param id - The workflow item ID for which to retrieve the item + * @param optionalPageable - optional pageable object + * @param projection - the current projection + * @return the item for the workflow item + */ + @PreAuthorize("hasPermission(#id, 'WORKFLOWITEM', 'READ')") + public ItemRest getWorkflowItemItem(@Nullable HttpServletRequest request, Integer id, + @Nullable Pageable optionalPageable, Projection projection) { + try { + Context context = obtainContext(); + WorkflowItem witem = wis.find(context, id); + if (witem == null) { + throw new ResourceNotFoundException("No such workflow item: " + id); + } + + return converter.toRest(witem.getItem(), projection); + } catch (SQLException e) { + throw new RuntimeException(e); + } + } +} diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/WorkflowItemRestRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/WorkflowItemRestRepository.java index 4f406e374a97..f6c879b3efdf 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/WorkflowItemRestRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/WorkflowItemRestRepository.java @@ -13,8 +13,8 @@ import java.sql.SQLException; import java.util.List; import java.util.UUID; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.apache.logging.log4j.LogManager; import org.apache.logging.log4j.Logger; import org.dspace.app.rest.Parameter; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/WorkflowItemStepLinkRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/WorkflowItemStepLinkRepository.java index 4e7aab34bff1..0cbdf50cbcef 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/WorkflowItemStepLinkRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/WorkflowItemStepLinkRepository.java @@ -9,9 +9,9 @@ import java.sql.SQLException; import java.util.List; -import javax.annotation.Nullable; -import javax.servlet.http.HttpServletRequest; +import jakarta.annotation.Nullable; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.model.WorkflowItemRest; import org.dspace.app.rest.model.WorkflowStepRest; import org.dspace.app.rest.projection.Projection; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/WorkflowItemSubmitterLinkRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/WorkflowItemSubmitterLinkRepository.java new file mode 100644 index 000000000000..9fe8e29bfa6b --- /dev/null +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/WorkflowItemSubmitterLinkRepository.java @@ -0,0 +1,60 @@ +/** + * The contents of this file are subject to the license and copyright + * detailed in the LICENSE and NOTICE files at the root of the source + * tree and available online at + * + * http://www.dspace.org/license/ + */ +package org.dspace.app.rest.repository; + +import java.sql.SQLException; +import javax.annotation.Nullable; + +import jakarta.servlet.http.HttpServletRequest; +import org.dspace.app.rest.model.EPersonRest; +import org.dspace.app.rest.model.WorkflowItemRest; +import org.dspace.app.rest.projection.Projection; +import org.dspace.core.Context; +import org.dspace.workflow.WorkflowItem; +import org.dspace.xmlworkflow.storedcomponents.service.XmlWorkflowItemService; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.data.domain.Pageable; +import org.springframework.data.rest.webmvc.ResourceNotFoundException; +import org.springframework.security.access.prepost.PreAuthorize; +import org.springframework.stereotype.Component; + +/** + * Link repository for "submitter" subresource of a workflow item. + */ +@Component(WorkflowItemRest.CATEGORY + "." + WorkflowItemRest.PLURAL_NAME + "." + WorkflowItemRest.SUBMITTER) +public class WorkflowItemSubmitterLinkRepository extends AbstractDSpaceRestRepository + implements LinkRestRepository { + + @Autowired + XmlWorkflowItemService wis; + + /** + * Retrieve the submitter for a workflow item. + * + * @param request - The current request + * @param id - The workflow item ID for which to retrieve the submitter + * @param optionalPageable - optional pageable object + * @param projection - the current projection + * @return the submitter for the workflow item + */ + @PreAuthorize("hasPermission(#id, 'WORKFLOWITEM', 'READ')") + public EPersonRest getWorkflowItemSubmitter(@Nullable HttpServletRequest request, Integer id, + @Nullable Pageable optionalPageable, Projection projection) { + try { + Context context = obtainContext(); + WorkflowItem witem = wis.find(context, id); + if (witem == null) { + throw new ResourceNotFoundException("No such workflow item: " + id); + } + + return converter.toRest(witem.getSubmitter(), projection); + } catch (SQLException e) { + throw new RuntimeException(e); + } + } +} diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/WorkspaceItemCollectionLinkRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/WorkspaceItemCollectionLinkRepository.java new file mode 100644 index 000000000000..a3ad57c31c72 --- /dev/null +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/WorkspaceItemCollectionLinkRepository.java @@ -0,0 +1,60 @@ +/** + * The contents of this file are subject to the license and copyright + * detailed in the LICENSE and NOTICE files at the root of the source + * tree and available online at + * + * http://www.dspace.org/license/ + */ +package org.dspace.app.rest.repository; + +import java.sql.SQLException; +import javax.annotation.Nullable; + +import jakarta.servlet.http.HttpServletRequest; +import org.dspace.app.rest.model.CollectionRest; +import org.dspace.app.rest.model.WorkspaceItemRest; +import org.dspace.app.rest.projection.Projection; +import org.dspace.content.WorkspaceItem; +import org.dspace.content.service.WorkspaceItemService; +import org.dspace.core.Context; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.data.domain.Pageable; +import org.springframework.data.rest.webmvc.ResourceNotFoundException; +import org.springframework.security.access.prepost.PreAuthorize; +import org.springframework.stereotype.Component; + +/** + * Link repository for "collection" subresource of a workspace item. + */ +@Component(WorkspaceItemRest.CATEGORY + "." + WorkspaceItemRest.PLURAL_NAME + "." + WorkspaceItemRest.COLLECTION) +public class WorkspaceItemCollectionLinkRepository extends AbstractDSpaceRestRepository + implements LinkRestRepository { + + @Autowired + WorkspaceItemService wis; + + /** + * Retrieve the collection for a workspace item. + * + * @param request - The current request + * @param id - The workspace item ID for which to retrieve the collection + * @param optionalPageable - optional pageable object + * @param projection - the current projection + * @return the collection for the workspace item + */ + @PreAuthorize("hasPermission(#id, 'WORKSPACEITEM', 'READ')") + public CollectionRest getWorkspaceItemCollection(@Nullable HttpServletRequest request, Integer id, + @Nullable Pageable optionalPageable, Projection projection) { + try { + Context context = obtainContext(); + WorkspaceItem witem = wis.find(context, id); + if (witem == null) { + throw new ResourceNotFoundException("No such workspace item: " + id); + } + + return converter.toRest(witem.getCollection(), projection); + } catch (SQLException e) { + throw new RuntimeException(e); + } + } +} diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/WorkspaceItemItemLinkRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/WorkspaceItemItemLinkRepository.java new file mode 100644 index 000000000000..0eb4e1b27dcb --- /dev/null +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/WorkspaceItemItemLinkRepository.java @@ -0,0 +1,60 @@ +/** + * The contents of this file are subject to the license and copyright + * detailed in the LICENSE and NOTICE files at the root of the source + * tree and available online at + * + * http://www.dspace.org/license/ + */ +package org.dspace.app.rest.repository; + +import java.sql.SQLException; +import javax.annotation.Nullable; + +import jakarta.servlet.http.HttpServletRequest; +import org.dspace.app.rest.model.ItemRest; +import org.dspace.app.rest.model.WorkspaceItemRest; +import org.dspace.app.rest.projection.Projection; +import org.dspace.content.WorkspaceItem; +import org.dspace.content.service.WorkspaceItemService; +import org.dspace.core.Context; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.data.domain.Pageable; +import org.springframework.data.rest.webmvc.ResourceNotFoundException; +import org.springframework.security.access.prepost.PreAuthorize; +import org.springframework.stereotype.Component; + +/** + * Link repository for "item" subresource of a workspace item. + */ +@Component(WorkspaceItemRest.CATEGORY + "." + WorkspaceItemRest.PLURAL_NAME + "." + WorkspaceItemRest.ITEM) +public class WorkspaceItemItemLinkRepository extends AbstractDSpaceRestRepository + implements LinkRestRepository { + + @Autowired + WorkspaceItemService wis; + + /** + * Retrieve the item for a workspace item. + * + * @param request - The current request + * @param id - The workspace item ID for which to retrieve the item + * @param optionalPageable - optional pageable object + * @param projection - the current projection + * @return the item for the workspace item + */ + @PreAuthorize("hasPermission(#id, 'WORKSPACEITEM', 'READ')") + public ItemRest getWorkspaceItemItem(@Nullable HttpServletRequest request, Integer id, + @Nullable Pageable optionalPageable, Projection projection) { + try { + Context context = obtainContext(); + WorkspaceItem witem = wis.find(context, id); + if (witem == null) { + throw new ResourceNotFoundException("No such workspace item: " + id); + } + + return converter.toRest(witem.getItem(), projection); + } catch (SQLException e) { + throw new RuntimeException(e); + } + } +} diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/WorkspaceItemRestRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/WorkspaceItemRestRepository.java index ef1cc4d21465..d9f89b757ca5 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/WorkspaceItemRestRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/WorkspaceItemRestRepository.java @@ -14,8 +14,8 @@ import java.util.ArrayList; import java.util.List; import java.util.UUID; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.apache.commons.lang3.StringUtils; import org.apache.logging.log4j.Logger; import org.dspace.app.rest.Parameter; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/WorkspaceItemSubmitterLinkRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/WorkspaceItemSubmitterLinkRepository.java new file mode 100644 index 000000000000..707ab7e13d5e --- /dev/null +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/WorkspaceItemSubmitterLinkRepository.java @@ -0,0 +1,60 @@ +/** + * The contents of this file are subject to the license and copyright + * detailed in the LICENSE and NOTICE files at the root of the source + * tree and available online at + * + * http://www.dspace.org/license/ + */ +package org.dspace.app.rest.repository; + +import java.sql.SQLException; +import javax.annotation.Nullable; + +import jakarta.servlet.http.HttpServletRequest; +import org.dspace.app.rest.model.EPersonRest; +import org.dspace.app.rest.model.WorkspaceItemRest; +import org.dspace.app.rest.projection.Projection; +import org.dspace.content.WorkspaceItem; +import org.dspace.content.service.WorkspaceItemService; +import org.dspace.core.Context; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.data.domain.Pageable; +import org.springframework.data.rest.webmvc.ResourceNotFoundException; +import org.springframework.security.access.prepost.PreAuthorize; +import org.springframework.stereotype.Component; + +/** + * Link repository for "submitter" subresource of a workspace item. + */ +@Component(WorkspaceItemRest.CATEGORY + "." + WorkspaceItemRest.PLURAL_NAME + "." + WorkspaceItemRest.SUBMITTER) +public class WorkspaceItemSubmitterLinkRepository extends AbstractDSpaceRestRepository + implements LinkRestRepository { + + @Autowired + WorkspaceItemService wis; + + /** + * Retrieve the submitter for a workspace item. + * + * @param request - The current request + * @param id - The workspace item ID for which to retrieve the submitter + * @param optionalPageable - optional pageable object + * @param projection - the current projection + * @return the submitter for the workspace item + */ + @PreAuthorize("hasPermission(#id, 'WORKSPACEITEM', 'READ')") + public EPersonRest getWorkspaceItemSubmitter(@Nullable HttpServletRequest request, Integer id, + @Nullable Pageable optionalPageable, Projection projection) { + try { + Context context = obtainContext(); + WorkspaceItem witem = wis.find(context, id); + if (witem == null) { + throw new ResourceNotFoundException("No such workspace item: " + id); + } + + return converter.toRest(witem.getSubmitter(), projection); + } catch (SQLException e) { + throw new RuntimeException(e); + } + } +} diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/WorkspaceItemSupervisionOrdersLinkRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/WorkspaceItemSupervisionOrdersLinkRepository.java index 57bb64dcb529..79d77bf9441d 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/WorkspaceItemSupervisionOrdersLinkRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/WorkspaceItemSupervisionOrdersLinkRepository.java @@ -8,9 +8,9 @@ package org.dspace.app.rest.repository; import java.sql.SQLException; -import javax.annotation.Nullable; -import javax.servlet.http.HttpServletRequest; +import jakarta.annotation.Nullable; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.model.SupervisionOrderRest; import org.dspace.app.rest.model.WorkspaceItemRest; import org.dspace.app.rest.projection.Projection; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/handler/ExternalSourceCorrectionTypeUriListHandler.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/handler/ExternalSourceCorrectionTypeUriListHandler.java index f3776e217ed2..1d377934afef 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/handler/ExternalSourceCorrectionTypeUriListHandler.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/handler/ExternalSourceCorrectionTypeUriListHandler.java @@ -11,8 +11,8 @@ import java.util.List; import java.util.regex.Matcher; import java.util.regex.Pattern; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.exception.DSpaceBadRequestException; import org.dspace.authorize.AuthorizeException; import org.dspace.core.Context; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/handler/ExternalSourceEntryArchivedItemUriListHandler.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/handler/ExternalSourceEntryArchivedItemUriListHandler.java index 86189933d957..ea9618bb8b44 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/handler/ExternalSourceEntryArchivedItemUriListHandler.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/handler/ExternalSourceEntryArchivedItemUriListHandler.java @@ -9,8 +9,8 @@ import java.sql.SQLException; import java.util.List; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.apache.logging.log4j.Logger; import org.dspace.authorize.AuthorizeException; import org.dspace.authorize.service.AuthorizeService; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/handler/ExternalSourceEntryItemUriListHandler.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/handler/ExternalSourceEntryItemUriListHandler.java index 3ad9b7a19356..a1051b0f6743 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/handler/ExternalSourceEntryItemUriListHandler.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/handler/ExternalSourceEntryItemUriListHandler.java @@ -15,8 +15,8 @@ import java.util.UUID; import java.util.regex.Matcher; import java.util.regex.Pattern; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.apache.commons.lang3.StringUtils; import org.apache.logging.log4j.Logger; import org.dspace.app.rest.model.ExternalSourceRest; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/handler/ExternalSourceEntryOrcidQueueUriListHandler.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/handler/ExternalSourceEntryOrcidQueueUriListHandler.java index 0965058449be..df66a44b7b37 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/handler/ExternalSourceEntryOrcidQueueUriListHandler.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/handler/ExternalSourceEntryOrcidQueueUriListHandler.java @@ -11,8 +11,8 @@ import java.util.List; import java.util.regex.Matcher; import java.util.regex.Pattern; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.authorize.AuthorizeException; import org.dspace.core.Context; import org.dspace.orcid.OrcidQueue; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/handler/ExternalSourceEntryPoolTaskUriListHandler.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/handler/ExternalSourceEntryPoolTaskUriListHandler.java index 4ed438f93be5..afe075644721 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/handler/ExternalSourceEntryPoolTaskUriListHandler.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/handler/ExternalSourceEntryPoolTaskUriListHandler.java @@ -11,8 +11,8 @@ import java.util.List; import java.util.regex.Matcher; import java.util.regex.Pattern; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.authorize.AuthorizeException; import org.dspace.core.Context; import org.dspace.xmlworkflow.storedcomponents.PoolTask; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/handler/ExternalSourceEntryWorkspaceItemUriListHandler.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/handler/ExternalSourceEntryWorkspaceItemUriListHandler.java index 6491ec0fd6aa..9c83ee376077 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/handler/ExternalSourceEntryWorkspaceItemUriListHandler.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/handler/ExternalSourceEntryWorkspaceItemUriListHandler.java @@ -9,8 +9,8 @@ import java.sql.SQLException; import java.util.List; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.authorize.AuthorizeException; import org.dspace.content.WorkspaceItem; import org.dspace.core.Context; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/handler/ExternalSourceItemUriListHandler.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/handler/ExternalSourceItemUriListHandler.java index 201a7ba1633d..16c43336e90d 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/handler/ExternalSourceItemUriListHandler.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/handler/ExternalSourceItemUriListHandler.java @@ -11,8 +11,8 @@ import java.util.UUID; import java.util.regex.Matcher; import java.util.regex.Pattern; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.exception.DSpaceBadRequestException; import org.dspace.authorize.AuthorizeException; import org.dspace.content.Item; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/handler/UriListHandler.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/handler/UriListHandler.java index 84d652284539..bf12b6598bac 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/handler/UriListHandler.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/handler/UriListHandler.java @@ -9,8 +9,8 @@ import java.sql.SQLException; import java.util.List; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.authorize.AuthorizeException; import org.dspace.core.Context; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/handler/service/UriListHandlerService.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/handler/service/UriListHandlerService.java index 5366428b1cd6..fa63baf2d682 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/handler/service/UriListHandlerService.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/handler/service/UriListHandlerService.java @@ -9,8 +9,8 @@ import java.sql.SQLException; import java.util.List; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.apache.logging.log4j.LogManager; import org.apache.logging.log4j.Logger; import org.dspace.app.rest.exception.DSpaceBadRequestException; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/patch/operation/ldn/NotifyServiceInboundPatternsRemoveOperation.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/patch/operation/ldn/NotifyServiceInboundPatternsRemoveOperation.java index 76890f792ea3..2ff00dcab58a 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/patch/operation/ldn/NotifyServiceInboundPatternsRemoveOperation.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/patch/operation/ldn/NotifyServiceInboundPatternsRemoveOperation.java @@ -66,6 +66,6 @@ public boolean supports(Object objectToMatch, Operation operation) { String path = operation.getPath().trim(); return (objectToMatch instanceof NotifyServiceEntity && operation.getOp().trim().equalsIgnoreCase(OPERATION_REMOVE) && - path.startsWith(OPERATION_PATH)); + path.startsWith(OPERATION_PATH) && path.endsWith(OPERATION_PATH)); } } diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/AnonymousAdditionalAuthorizationFilter.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/AnonymousAdditionalAuthorizationFilter.java index 7f02264b92f3..235ef1a37d3e 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/AnonymousAdditionalAuthorizationFilter.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/AnonymousAdditionalAuthorizationFilter.java @@ -10,11 +10,11 @@ import java.io.IOException; import java.sql.SQLException; import java.util.List; -import javax.servlet.FilterChain; -import javax.servlet.ServletException; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; +import jakarta.servlet.FilterChain; +import jakarta.servlet.ServletException; +import jakarta.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletResponse; import org.apache.logging.log4j.LogManager; import org.apache.logging.log4j.Logger; import org.dspace.app.rest.utils.ContextUtil; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/CustomLogoutHandler.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/CustomLogoutHandler.java index 2287d30baf68..d94e7c82ccbd 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/CustomLogoutHandler.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/CustomLogoutHandler.java @@ -7,9 +7,8 @@ */ package org.dspace.app.rest.security; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; - +import jakarta.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletResponse; import org.apache.logging.log4j.LogManager; import org.apache.logging.log4j.Logger; import org.dspace.app.rest.utils.ContextUtil; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/DSpace401AuthenticationEntryPoint.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/DSpace401AuthenticationEntryPoint.java index b70931336e7a..958a920872db 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/DSpace401AuthenticationEntryPoint.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/DSpace401AuthenticationEntryPoint.java @@ -8,10 +8,10 @@ package org.dspace.app.rest.security; import java.io.IOException; -import javax.servlet.ServletException; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; +import jakarta.servlet.ServletException; +import jakarta.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletResponse; import org.springframework.security.core.AuthenticationException; import org.springframework.security.web.AuthenticationEntryPoint; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/DSpaceCsrfAuthenticationStrategy.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/DSpaceCsrfAuthenticationStrategy.java index b08ddab169c3..84442b455823 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/DSpaceCsrfAuthenticationStrategy.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/DSpaceCsrfAuthenticationStrategy.java @@ -7,14 +7,19 @@ */ package org.dspace.app.rest.security; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; - +import jakarta.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletResponse; +import org.apache.commons.logging.Log; +import org.apache.commons.logging.LogFactory; import org.springframework.security.core.Authentication; import org.springframework.security.web.authentication.session.SessionAuthenticationException; import org.springframework.security.web.authentication.session.SessionAuthenticationStrategy; +import org.springframework.security.web.csrf.CsrfAuthenticationStrategy; import org.springframework.security.web.csrf.CsrfToken; import org.springframework.security.web.csrf.CsrfTokenRepository; +import org.springframework.security.web.csrf.CsrfTokenRequestHandler; +import org.springframework.security.web.csrf.DeferredCsrfToken; +import org.springframework.security.web.csrf.XorCsrfTokenRequestAttributeHandler; import org.springframework.util.Assert; import org.springframework.util.StringUtils; @@ -25,29 +30,41 @@ * successfully or unsuccessfully). This ensures that the Token is not changed on every request (since we are stateless * every request creates a new Authentication object). *

- * Based on Spring Security's CsrfAuthenticationStrategy: - * https://github.com/spring-projects/spring-security/blob/5.2.x/web/src/main/java/org/springframework/security/web/csrf/CsrfAuthenticationStrategy.java + * This is essentially a customization of Spring Security's CsrfAuthenticationStrategy: + * https://github.com/spring-projects/spring-security/blob/6.2.x/web/src/main/java/org/springframework/security/web/csrf/CsrfAuthenticationStrategy.java */ public class DSpaceCsrfAuthenticationStrategy implements SessionAuthenticationStrategy { - private final CsrfTokenRepository csrfTokenRepository; + private final Log logger = LogFactory.getLog(getClass()); + + private final CsrfTokenRepository tokenRepository; + + private CsrfTokenRequestHandler requestHandler = new XorCsrfTokenRequestAttributeHandler(); /** * Creates a new instance - * @param csrfTokenRepository the {@link CsrfTokenRepository} to use + * @param tokenRepository the {@link CsrfTokenRepository} to use + */ + public DSpaceCsrfAuthenticationStrategy(CsrfTokenRepository tokenRepository) { + Assert.notNull(tokenRepository, "tokenRepository cannot be null"); + this.tokenRepository = tokenRepository; + } + + /** + * Method is copied from {@link CsrfAuthenticationStrategy#setRequestHandler(CsrfTokenRequestHandler)} */ - public DSpaceCsrfAuthenticationStrategy(CsrfTokenRepository csrfTokenRepository) { - Assert.notNull(csrfTokenRepository, "csrfTokenRepository cannot be null"); - this.csrfTokenRepository = csrfTokenRepository; + public void setRequestHandler(CsrfTokenRequestHandler requestHandler) { + Assert.notNull(requestHandler, "requestHandler cannot be null"); + this.requestHandler = requestHandler; } /** * This method is triggered anytime a new Authentication occurs. As DSpace uses Stateless authentication, * this method is triggered on _every request_ after an initial login occurs. This is because the Spring Security - * Authentication object is recreated on every request. + * 'Authentication' object is recreated on every request. *

* Therefore, for DSpace, we've customized this method to ensure a new CSRF Token is NOT generated each time a new - * Authentication object is created -- doing so causes the CSRF Token to change with every request. Instead, we + * Authentication object is created -- as doing so causes the CSRF Token to change with every request. Instead, we * check to see if the client also passed a CSRF token via a querystring parameter (i.e. "_csrf"). If so, this means * the client has sent the token in a less secure manner & it must then be regenerated. *

@@ -58,8 +75,10 @@ public void onAuthentication(Authentication authentication, HttpServletRequest request, HttpServletResponse response) throws SessionAuthenticationException { + // Check if token returned in server-side cookie - CsrfToken token = this.csrfTokenRepository.loadToken(request); + CsrfToken token = this.tokenRepository.loadToken(request); + // For DSpace, this will only be null if we are forcing CSRF token regeneration (e.g. on initial login) boolean containsToken = token != null; @@ -70,18 +89,31 @@ public void onAuthentication(Authentication authentication, // If token exists was sent in a parameter, then we need to reset our token // (as sending token in a param is insecure) if (containsParameter) { - // Note: We first set the token to null & then set a new one. This results in 2 cookies sent, - // the first being empty and the second having the new token. - // This behavior is borrowed from Spring Security's CsrfAuthenticationStrategy, see - // https://github.com/spring-projects/spring-security/blob/5.4.x/web/src/main/java/org/springframework/security/web/csrf/CsrfAuthenticationStrategy.java - this.csrfTokenRepository.saveToken(null, request, response); - CsrfToken newToken = this.csrfTokenRepository.generateToken(request); - this.csrfTokenRepository.saveToken(newToken, request, response); - - request.setAttribute(CsrfToken.class.getName(), newToken); - request.setAttribute(newToken.getParameterName(), newToken); + resetCSRFToken(request, response); } } } + /** + * A custom utility method to force Spring Security to reset the CSRF token. This is used by DSpace to reset + * the token whenever the CSRF token is passed insecurely (as a request param, see onAuthentication() above) + * or on logout (see JWTTokenRestAuthenticationServiceImpl) + * @param request current HTTP request + * @param response current HTTP response + * @see org.dspace.app.rest.security.jwt.JWTTokenRestAuthenticationServiceImpl + */ + public void resetCSRFToken(HttpServletRequest request, HttpServletResponse response) { + // Note: We first set the token to null & then set a new one. This results in 2 cookies sent, + // the first being empty and the second having the new token. + // This behavior is borrowed from Spring Security's CsrfAuthenticationStrategy, see + // https://github.com/spring-projects/spring-security/blob/6.2.x/web/src/main/java/org/springframework/security/web/csrf/CsrfAuthenticationStrategy.java + this.tokenRepository.saveToken(null, request, response); + DeferredCsrfToken deferredCsrfToken = this.tokenRepository.loadDeferredToken(request, response); + this.requestHandler.handle(request, response, deferredCsrfToken::get); + // This may look odd, but reading the deferred CSRF token will cause Spring Security to send it back + // in the next request. This ensures our new token is sent back immediately (instead of in a later request) + deferredCsrfToken.get(); + this.logger.debug("Replaced CSRF Token"); + } + } diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/DSpaceCsrfTokenRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/DSpaceCsrfTokenRepository.java index 2079727ac889..0bcd2a55237d 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/DSpaceCsrfTokenRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/DSpaceCsrfTokenRepository.java @@ -8,12 +8,13 @@ package org.dspace.app.rest.security; import java.util.UUID; -import javax.servlet.http.Cookie; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; -import javax.ws.rs.core.HttpHeaders; +import java.util.function.Consumer; +import jakarta.servlet.http.Cookie; +import jakarta.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletResponse; import org.springframework.http.ResponseCookie; +import org.springframework.security.web.csrf.CookieCsrfTokenRepository; import org.springframework.security.web.csrf.CsrfToken; import org.springframework.security.web.csrf.CsrfTokenRepository; import org.springframework.security.web.csrf.DefaultCsrfToken; @@ -25,9 +26,10 @@ * This is a custom Spring Security CsrfTokenRepository which supports *cross-domain* CSRF protection (allowing the * client and backend to be on different domains). It's inspired by https://stackoverflow.com/a/33175322 *

- * This also borrows heavily from Spring Security's CookieCsrfTokenRepository: - * https://github.com/spring-projects/spring-security/blob/5.2.x/web/src/main/java/org/springframework/security/web/csrf/CookieCsrfTokenRepository.java - * + * This is essentially a customization of Spring Security's CookieCsrfTokenRepository: + * https://github.com/spring-projects/spring-security/blob/6.2.x/web/src/main/java/org/springframework/security/web/csrf/CookieCsrfTokenRepository.java + * However, as that class is "final" we aannot override it directly. + *

* How it works: * * 1. Backend generates XSRF token & stores in a *server-side* cookie named DSPACE-XSRF-COOKIE. By default, this cookie @@ -53,11 +55,19 @@ public class DSpaceCsrfTokenRepository implements CsrfTokenRepository { // This cookie name is changed from the default "XSRF-TOKEN" to ensure it is uniquely named and doesn't conflict // with any other XSRF-TOKEN cookies (e.g. in Angular UI, the XSRF-TOKEN cookie is a *client-side* only cookie) - static final String DEFAULT_CSRF_COOKIE_NAME = "DSPACE-XSRF-COOKIE"; + public static final String DEFAULT_CSRF_COOKIE_NAME = "DSPACE-XSRF-COOKIE"; + + // The HTTP header that is sent back to the client whenever a new CSRF token is created + // (NOTE: This is purposefully different from DEFAULT_CSRF_HEADER_NAME below!) + public static final String DSPACE_CSRF_HEADER_NAME = "DSPACE-XSRF-TOKEN"; - static final String DEFAULT_CSRF_PARAMETER_NAME = "_csrf"; + public static final String DEFAULT_CSRF_PARAMETER_NAME = "_csrf"; - static final String DEFAULT_CSRF_HEADER_NAME = "X-XSRF-TOKEN"; + // The HTTP header that Spring Security expects to receive from the client in order to validate a CSRF token + public static final String DEFAULT_CSRF_HEADER_NAME = "X-XSRF-TOKEN"; + + private static final String CSRF_TOKEN_REMOVED_ATTRIBUTE_NAME = CookieCsrfTokenRepository.class.getName() + .concat(".REMOVED"); private String parameterName = DEFAULT_CSRF_PARAMETER_NAME; @@ -71,73 +81,93 @@ public class DSpaceCsrfTokenRepository implements CsrfTokenRepository { private String cookieDomain; + private Boolean secure; + + private int cookieMaxAge = -1; + + private Consumer cookieCustomizer = (builder) -> { + }; + public DSpaceCsrfTokenRepository() { } + /** + * Method is copied from {@link CookieCsrfTokenRepository#setCookieCustomizer(Consumer)} + */ + public void setCookieCustomizer(Consumer cookieCustomizer) { + Assert.notNull(cookieCustomizer, "cookieCustomizer must not be null"); + this.cookieCustomizer = cookieCustomizer; + } + + /** + * Method is copied from {@link CookieCsrfTokenRepository#generateToken(HttpServletRequest)} + */ @Override public CsrfToken generateToken(HttpServletRequest request) { - return new DefaultCsrfToken(this.headerName, this.parameterName, - createNewToken()); + return new DefaultCsrfToken(this.headerName, this.parameterName, createNewToken()); } /** - * This method has been modified for DSpace. + * This method has been modified for DSpace. It borrows MOST of the logic from + * {@link CookieCsrfTokenRepository#saveToken(CsrfToken, HttpServletRequest, HttpServletResponse)} *

- * It now uses ResponseCookie to build the cookie, so that the "SameSite" attribute can be applied. + * It applies a "SameSite" attribute to every cookie by default. *

- * It also sends the token (if not empty) in both the cookie and the custom "DSPACE-XSRF-TOKEN" header + * It also sends the token (if not empty) back in BOTH the cookie and the custom "DSPACE-XSRF-TOKEN" header. + * By default, Spring Security will only send the token back in the cookie. * @param token current token * @param request current request * @param response current response */ @Override - public void saveToken(CsrfToken token, HttpServletRequest request, - HttpServletResponse response) { - String tokenValue = token == null ? "" : token.getToken(); - Cookie cookie = new Cookie(this.cookieName, tokenValue); - cookie.setSecure(request.isSecure()); - if (this.cookiePath != null && !this.cookiePath.isEmpty()) { - cookie.setPath(this.cookiePath); - } else { - cookie.setPath(this.getRequestContext(request)); - } - if (token == null) { - cookie.setMaxAge(0); - } else { - cookie.setMaxAge(-1); - } - cookie.setHttpOnly(cookieHttpOnly); - if (this.cookieDomain != null && !this.cookieDomain.isEmpty()) { - cookie.setDomain(this.cookieDomain); - } + public void saveToken(CsrfToken token, HttpServletRequest request, HttpServletResponse response) { + String tokenValue = (token != null) ? token.getToken() : ""; - // Custom: Turn the above Cookie into a ResponseCookie so that we can set "SameSite" attribute - // If client is on a different domain than the backend, then Cookie MUST use "SameSite=None" and "Secure". - // Most modern browsers will block it otherwise. - // TODO: Make SameSite configurable? "Lax" cookies are more secure, but require client & backend on same domain. - String sameSite = "None"; - if (!cookie.getSecure()) { - sameSite = "Lax"; - } - ResponseCookie responseCookie = ResponseCookie.from(cookie.getName(), cookie.getValue()) - .path(cookie.getPath()).maxAge(cookie.getMaxAge()) - .domain(cookie.getDomain()).httpOnly(cookie.isHttpOnly()) - .secure(cookie.getSecure()).sameSite(sameSite).build(); + ResponseCookie.ResponseCookieBuilder cookieBuilder = + ResponseCookie.from(this.cookieName, tokenValue) + .secure((this.secure != null) ? this.secure : request.isSecure()) + .path(StringUtils.hasLength(this.cookiePath) ? + this.cookiePath : this.getRequestContext(request)) + .maxAge((token != null) ? this.cookieMaxAge : 0) + .httpOnly(this.cookieHttpOnly) + .domain(this.cookieDomain) + // Custom for DSpace: If client is on a different domain than the backend, then Cookie MUST + // use "SameSite=None" and "Secure". Most modern browsers will block it otherwise. + // TODO: Make SameSite configurable? "Lax" cookies are more secure, but require client & + // backend on same domain. + .sameSite(request.isSecure() ? "None" : "Lax");; - // Write the ResponseCookie to the Set-Cookie header - // This cookie is only used by the backend & not needed by client - response.addHeader(HttpHeaders.SET_COOKIE, responseCookie.toString()); + this.cookieCustomizer.accept(cookieBuilder); - // Send custom header to client with token (only if token not empty) - // We send our token via a custom header because client can be on a different domain. + // Custom for DSpace: also send custom header to client with token. + // We send our token via a custom header because client may be on a different domain. // Cookies cannot be reliably sent cross-domain. if (StringUtils.hasLength(tokenValue)) { - response.setHeader("DSPACE-XSRF-TOKEN", tokenValue); + response.setHeader(DSPACE_CSRF_HEADER_NAME, tokenValue); + } + + Cookie cookie = mapToCookie(cookieBuilder.build()); + response.addCookie(cookie); + + // Set request attribute to signal that response has blank cookie value, + // which allows loadToken to return null when token has been removed + if (!StringUtils.hasLength(tokenValue)) { + request.setAttribute(CSRF_TOKEN_REMOVED_ATTRIBUTE_NAME, Boolean.TRUE); + } else { + request.removeAttribute(CSRF_TOKEN_REMOVED_ATTRIBUTE_NAME); } } + /** + * Method is copied from {@link CookieCsrfTokenRepository#loadToken(HttpServletRequest)} + */ @Override public CsrfToken loadToken(HttpServletRequest request) { + // Return null when token has been removed during the current request + // which allows loadDeferredToken to re-generate the token + if (Boolean.TRUE.equals(request.getAttribute(CSRF_TOKEN_REMOVED_ATTRIBUTE_NAME))) { + return null; + } Cookie cookie = WebUtils.getCookie(request, this.cookieName); if (cookie == null) { return null; @@ -146,104 +176,124 @@ public CsrfToken loadToken(HttpServletRequest request) { if (!StringUtils.hasLength(token)) { return null; } - return new DefaultCsrfToken(this.headerName, this.parameterName, token); } - /** - * Sets the name of the HTTP request parameter that should be used to provide a token. - * - * @param parameterName the name of the HTTP request parameter that should be used to - * provide a token + * Method is copied from {@link CookieCsrfTokenRepository#setParameterName(String)} */ public void setParameterName(String parameterName) { - Assert.notNull(parameterName, "parameterName is not null"); + Assert.notNull(parameterName, "parameterName cannot be null"); this.parameterName = parameterName; } /** - * Sets the name of the HTTP header that should be used to provide the token. - * - * @param headerName the name of the HTTP header that should be used to provide the - * token + * Method is copied from {@link CookieCsrfTokenRepository#setHeaderName(String)} */ public void setHeaderName(String headerName) { - Assert.notNull(headerName, "headerName is not null"); + Assert.notNull(headerName, "headerName cannot be null"); this.headerName = headerName; } /** - * Sets the name of the cookie that the expected CSRF token is saved to and read from. - * - * @param cookieName the name of the cookie that the expected CSRF token is saved to - * and read from + * Method is copied from {@link CookieCsrfTokenRepository#setCookieName(String)} */ public void setCookieName(String cookieName) { - Assert.notNull(cookieName, "cookieName is not null"); + Assert.notNull(cookieName, "cookieName cannot be null"); this.cookieName = cookieName; } /** - * Sets the HttpOnly attribute on the cookie containing the CSRF token. - * Defaults to true. - * - * @param cookieHttpOnly true sets the HttpOnly attribute, false does not set it + * Method is copied from {@link CookieCsrfTokenRepository#setCookieHttpOnly(boolean)} + * @deprecated Use {@link #setCookieCustomizer(Consumer)} instead. */ + @Deprecated public void setCookieHttpOnly(boolean cookieHttpOnly) { this.cookieHttpOnly = cookieHttpOnly; } + /** + * Method is copied from {@link CookieCsrfTokenRepository} + */ private String getRequestContext(HttpServletRequest request) { String contextPath = request.getContextPath(); - return contextPath.length() > 0 ? contextPath : "/"; + return (contextPath.length() > 0) ? contextPath : "/"; } /** - * Factory method to conveniently create an instance that has - * {@link #setCookieHttpOnly(boolean)} set to false. - * - * @return an instance of CookieCsrfTokenRepository with - * {@link #setCookieHttpOnly(boolean)} set to false + * Method is copied from {@link CookieCsrfTokenRepository} + * (and only modified to return the DSpaceCsrfTokenRepository instead) */ public static DSpaceCsrfTokenRepository withHttpOnlyFalse() { DSpaceCsrfTokenRepository result = new DSpaceCsrfTokenRepository(); - result.setCookieHttpOnly(false); + result.cookieHttpOnly = false; return result; } + /** + * Method is copied from {@link CookieCsrfTokenRepository} + */ private String createNewToken() { return UUID.randomUUID().toString(); } /** - * Set the path that the Cookie will be created with. This will override the default functionality which uses the - * request context as the path. - * - * @param path the path to use + * Method is copied from {@link CookieCsrfTokenRepository} + */ + private Cookie mapToCookie(ResponseCookie responseCookie) { + Cookie cookie = new Cookie(responseCookie.getName(), responseCookie.getValue()); + cookie.setSecure(responseCookie.isSecure()); + cookie.setPath(responseCookie.getPath()); + cookie.setMaxAge((int) responseCookie.getMaxAge().getSeconds()); + cookie.setHttpOnly(responseCookie.isHttpOnly()); + if (StringUtils.hasLength(responseCookie.getDomain())) { + cookie.setDomain(responseCookie.getDomain()); + } + if (StringUtils.hasText(responseCookie.getSameSite())) { + cookie.setAttribute("SameSite", responseCookie.getSameSite()); + } + return cookie; + } + + /** + * Method is copied from {@link CookieCsrfTokenRepository#setCookiePath(String)} */ public void setCookiePath(String path) { this.cookiePath = path; } /** - * Get the path that the CSRF cookie will be set to. - * - * @return the path to be used. + * Method is copied from {@link CookieCsrfTokenRepository#getCookiePath()} */ public String getCookiePath() { return this.cookiePath; } /** - * Sets the domain of the cookie that the expected CSRF token is saved to and read from. - * - * @since 5.2 - * @param cookieDomain the domain of the cookie that the expected CSRF token is saved to - * and read from + * Method is copied from {@link CookieCsrfTokenRepository#setCookieDomain(String)} + * @deprecated Use {@link #setCookieCustomizer(Consumer)} instead. */ + @Deprecated public void setCookieDomain(String cookieDomain) { this.cookieDomain = cookieDomain; } + /** + * Method is copied from {@link CookieCsrfTokenRepository#setSecure(Boolean)} + * @deprecated Use {@link #setCookieCustomizer(Consumer)} instead. + */ + @Deprecated + public void setSecure(Boolean secure) { + this.secure = secure; + } + + /** + * Method is copied from {@link CookieCsrfTokenRepository#setCookieMaxAge(int)} + * @deprecated Use {@link #setCookieCustomizer(Consumer)} instead. + */ + @Deprecated + public void setCookieMaxAge(int cookieMaxAge) { + Assert.isTrue(cookieMaxAge != 0, "cookieMaxAge cannot be zero"); + this.cookieMaxAge = cookieMaxAge; + } } diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/DSpacePermissionEvaluator.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/DSpacePermissionEvaluator.java index b801830d916f..d6e162b30a46 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/DSpacePermissionEvaluator.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/DSpacePermissionEvaluator.java @@ -38,13 +38,13 @@ public class DSpacePermissionEvaluator implements PermissionEvaluator { * expression system. This corresponds to the DSpace action. Not null. * @return true if the permission is granted by one of the plugins, false otherwise */ + @Override public boolean hasPermission(Authentication authentication, Object targetDomainObject, Object permission) { for (RestPermissionEvaluatorPlugin permissionEvaluatorPlugin : permissionEvaluatorPluginList) { if (permissionEvaluatorPlugin.hasPermission(authentication, targetDomainObject, permission)) { return true; } } - return false; } @@ -59,6 +59,7 @@ public boolean hasPermission(Authentication authentication, Object targetDomainO * expression system. This corresponds to the DSpace action. Not null. * @return true if the permission is granted by one of the plugins, false otherwise */ + @Override public boolean hasPermission(Authentication authentication, Serializable targetId, String targetType, Object permission) { for (RestPermissionEvaluatorPlugin permissionEvaluatorPlugin : permissionEvaluatorPluginList) { diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/EPersonRestAuthenticationProvider.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/EPersonRestAuthenticationProvider.java index 5b3eda5b5716..7926f4681ff7 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/EPersonRestAuthenticationProvider.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/EPersonRestAuthenticationProvider.java @@ -15,9 +15,9 @@ import java.util.LinkedList; import java.util.List; import java.util.Objects; -import javax.annotation.PostConstruct; -import javax.servlet.http.HttpServletRequest; +import jakarta.annotation.PostConstruct; +import jakarta.servlet.http.HttpServletRequest; import org.apache.commons.lang3.StringUtils; import org.apache.logging.log4j.LogManager; import org.apache.logging.log4j.Logger; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/EPersonRestPermissionEvaluatorPlugin.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/EPersonRestPermissionEvaluatorPlugin.java index bd2a71288b92..c3e1cc68ae96 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/EPersonRestPermissionEvaluatorPlugin.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/EPersonRestPermissionEvaluatorPlugin.java @@ -11,8 +11,8 @@ import java.sql.SQLException; import java.util.List; import java.util.UUID; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.apache.commons.lang3.StringUtils; import org.apache.logging.log4j.LogManager; import org.apache.logging.log4j.Logger; @@ -61,6 +61,9 @@ public boolean hasDSpacePermission(Authentication authentication, Serializable t if (Constants.getTypeID(targetType) != Constants.EPERSON) { return false; } + if (targetId == null) { + return false; + } Request request = requestService.getCurrentRequest(); Context context = ContextUtil.obtainContext(request.getHttpServletRequest()); diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/ExtractorOfAInprogressSubmissionInformations.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/ExtractorOfAInprogressSubmissionInformations.java index dd2c8602d891..cbe685f9fe48 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/ExtractorOfAInprogressSubmissionInformations.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/ExtractorOfAInprogressSubmissionInformations.java @@ -9,9 +9,9 @@ import java.sql.SQLException; import java.util.Objects; import java.util.UUID; -import javax.annotation.Nullable; -import javax.servlet.http.HttpServletRequest; +import jakarta.annotation.Nullable; +import jakarta.servlet.http.HttpServletRequest; import org.apache.commons.lang.StringUtils; import org.dspace.app.rest.model.WorkflowItemRest; import org.dspace.app.rest.model.WorkspaceItemRest; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/GroupRestPermissionEvaluatorPlugin.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/GroupRestPermissionEvaluatorPlugin.java index f15efcccb058..ad34cede6bf4 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/GroupRestPermissionEvaluatorPlugin.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/GroupRestPermissionEvaluatorPlugin.java @@ -59,6 +59,9 @@ public boolean hasDSpacePermission(Authentication authentication, Serializable t || Constants.getTypeID(targetType) != Constants.GROUP) { return false; } + if (targetId == null) { + return false; + } Request request = requestService.getCurrentRequest(); Context context = ContextUtil.obtainContext(request.getHttpServletRequest()); diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/MethodSecurityConfig.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/MethodSecurityConfig.java index 993c1d3de78d..90a8f013e259 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/MethodSecurityConfig.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/MethodSecurityConfig.java @@ -7,62 +7,33 @@ */ package org.dspace.app.rest.security; -import java.util.Optional; - -import org.springframework.beans.factory.NoSuchBeanDefinitionException; import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.context.ApplicationContext; +import org.springframework.context.annotation.Bean; import org.springframework.context.annotation.Configuration; -import org.springframework.core.LocalVariableTableParameterNameDiscoverer; import org.springframework.security.access.PermissionEvaluator; import org.springframework.security.access.expression.method.DefaultMethodSecurityExpressionHandler; import org.springframework.security.access.expression.method.MethodSecurityExpressionHandler; -import org.springframework.security.config.annotation.method.configuration.EnableGlobalMethodSecurity; -import org.springframework.security.config.annotation.method.configuration.GlobalMethodSecurityConfiguration; +import org.springframework.security.config.annotation.method.configuration.EnableMethodSecurity; /** - * Extension of {@link GlobalMethodSecurityConfiguration} that allow to override - * the {@link DefaultMethodSecurityExpressionHandler} standard configuration to - * set a specific ParameterNameDiscoverer. This customization is done to avoid - * Spring to use the {@link AnnotationParameterNameDiscoverer} when resolving - * parameters of under security methods for performance reasons. For this reason - * it is not possible to use the {@link P} and {@link Param} annotations to - * indicate the name of the parameters referenced in the methods. - * - * @author Luca Giamminonni (luca.giamminonni at 4science.it) + * This EnableMethodSecurity configuration enables Spring Security annotation checks on all methods + * (e.g. @PreAuthorize, @PostAuthorize annotations, etc.) */ @Configuration -@EnableGlobalMethodSecurity(prePostEnabled = true) -public class MethodSecurityConfig extends GlobalMethodSecurityConfiguration { - +@EnableMethodSecurity +public class MethodSecurityConfig { @Autowired private PermissionEvaluator dSpacePermissionEvaluator; - @Autowired - private ApplicationContext applicationContext; - - private DefaultMethodSecurityExpressionHandler expressionHandler; - - @Override - protected MethodSecurityExpressionHandler createExpressionHandler() { - this.expressionHandler = new DefaultMethodSecurityExpressionHandler(); - this.expressionHandler.setApplicationContext(applicationContext); - this.expressionHandler.setParameterNameDiscoverer(new LocalVariableTableParameterNameDiscoverer()); - this.expressionHandler.setPermissionEvaluator(dSpacePermissionEvaluator); + /** + * Tell Spring to use our custom PermissionEvaluator as part of method security. + * This allows DSpacePermissionEvaluator to be used in @PreAuthorize annotations (and similar). + * @see org.dspace.app.rest.security.DSpacePermissionEvaluator + */ + @Bean + MethodSecurityExpressionHandler methodSecurityExpressionHandler() { + DefaultMethodSecurityExpressionHandler expressionHandler = new DefaultMethodSecurityExpressionHandler(); + expressionHandler.setPermissionEvaluator(dSpacePermissionEvaluator); return expressionHandler; } - - @Override - public void afterSingletonsInstantiated() { - getSingleBean(PermissionEvaluator.class) - .ifPresent(((DefaultMethodSecurityExpressionHandler)this.expressionHandler)::setPermissionEvaluator); - } - - private Optional getSingleBean(Class type) { - try { - return Optional.of(applicationContext.getBean(type)); - } catch (NoSuchBeanDefinitionException e) { - return Optional.empty(); - } - } } diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/OidcLoginFilter.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/OidcLoginFilter.java index c84840e77041..28c67314c5ca 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/OidcLoginFilter.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/OidcLoginFilter.java @@ -10,26 +10,27 @@ import static org.dspace.authenticate.OidcAuthenticationBean.OIDC_AUTH_ATTRIBUTE; import java.io.IOException; -import javax.servlet.FilterChain; -import javax.servlet.ServletException; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; +import jakarta.servlet.FilterChain; +import jakarta.servlet.ServletException; +import jakarta.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletResponse; import org.springframework.security.authentication.AuthenticationManager; import org.springframework.security.core.Authentication; import org.springframework.security.core.AuthenticationException; /** - * This class will filter openID Connect requests and try and authenticate them. + * This class will filter OpenID Connect (OIDC) requests and try and authenticate them. + * In this case, the actual authentication is performed by OIDC. After authentication succeeds, OIDC will send + * the authentication data to this filter in order for it to be processed by DSpace. * * @author Pasquale Cavallo (pasquale.cavallo at 4science dot it) */ - public class OidcLoginFilter extends StatelessLoginFilter { - public OidcLoginFilter(String url, AuthenticationManager authenticationManager, + public OidcLoginFilter(String url, String httpMethod, AuthenticationManager authenticationManager, RestAuthenticationService restAuthenticationService) { - super(url, authenticationManager, restAuthenticationService); + super(url, httpMethod, authenticationManager, restAuthenticationService); } @Override diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/OrcidLoginFilter.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/OrcidLoginFilter.java index 0a50fec20803..084a4bb2aba0 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/OrcidLoginFilter.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/OrcidLoginFilter.java @@ -14,11 +14,11 @@ import java.io.IOException; import java.text.MessageFormat; import java.util.ArrayList; -import javax.servlet.FilterChain; -import javax.servlet.ServletException; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; +import jakarta.servlet.FilterChain; +import jakarta.servlet.ServletException; +import jakarta.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletResponse; import org.apache.commons.lang3.StringUtils; import org.apache.logging.log4j.LogManager; import org.apache.logging.log4j.Logger; @@ -37,6 +37,8 @@ /** * This class will filter ORCID requests and try and authenticate them. + * In this case, the actual authentication is performed by ORCID. After authentication succeeds, ORCID will send + * the authentication data to this filter in order for it to be processed by DSpace. * * @author Luca Giamminonni (luca.giamminonni at 4science.it) */ @@ -51,9 +53,9 @@ public class OrcidLoginFilter extends StatelessLoginFilter { .getServiceByName("orcidAuthentication", OrcidAuthenticationBean.class); - public OrcidLoginFilter(String url, AuthenticationManager authenticationManager, - RestAuthenticationService restAuthenticationService) { - super(url, authenticationManager, restAuthenticationService); + public OrcidLoginFilter(String url, String httpMethod, AuthenticationManager authenticationManager, + RestAuthenticationService restAuthenticationService) { + super(url, httpMethod, authenticationManager, restAuthenticationService); } @Override @@ -63,7 +65,7 @@ public Authentication attemptAuthentication(HttpServletRequest req, HttpServletR if (!OrcidAuthentication.isEnabled()) { throw new ProviderNotFoundException("Orcid login is disabled."); } - + // NOTE: because this authentication is implicit, we pass in an empty DSpaceAuthentication return authenticationManager.authenticate(new DSpaceAuthentication()); } diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/ResearcherProfileRestPermissionEvaluatorPlugin.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/ResearcherProfileRestPermissionEvaluatorPlugin.java index 0e0f60807855..5cad1b33535a 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/ResearcherProfileRestPermissionEvaluatorPlugin.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/ResearcherProfileRestPermissionEvaluatorPlugin.java @@ -13,8 +13,8 @@ import java.io.Serializable; import java.util.UUID; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.apache.commons.lang3.StringUtils; import org.dspace.app.rest.model.ResearcherProfileRest; import org.dspace.app.rest.utils.ContextUtil; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/RestAuthenticationService.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/RestAuthenticationService.java index 812889d029e2..20efbbcb161f 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/RestAuthenticationService.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/RestAuthenticationService.java @@ -8,9 +8,9 @@ package org.dspace.app.rest.security; import java.io.IOException; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; +import jakarta.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletResponse; import org.dspace.app.rest.model.wrapper.AuthenticationToken; import org.dspace.authenticate.service.AuthenticationService; import org.dspace.core.Context; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/ShibbolethLoginFilter.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/ShibbolethLoginFilter.java index e10fc49eccad..886706713238 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/ShibbolethLoginFilter.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/ShibbolethLoginFilter.java @@ -9,11 +9,11 @@ import java.io.IOException; import java.util.ArrayList; -import javax.servlet.FilterChain; -import javax.servlet.ServletException; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; +import jakarta.servlet.FilterChain; +import jakarta.servlet.ServletException; +import jakarta.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletResponse; import org.apache.commons.lang3.StringUtils; import org.apache.logging.log4j.LogManager; import org.apache.logging.log4j.Logger; @@ -56,9 +56,9 @@ public class ShibbolethLoginFilter extends StatelessLoginFilter { private ConfigurationService configurationService = DSpaceServicesFactory.getInstance().getConfigurationService(); - public ShibbolethLoginFilter(String url, AuthenticationManager authenticationManager, + public ShibbolethLoginFilter(String url, String httpMethod, AuthenticationManager authenticationManager, RestAuthenticationService restAuthenticationService) { - super(url, authenticationManager, restAuthenticationService); + super(url, httpMethod, authenticationManager, restAuthenticationService); } @Override diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/StatelessAuthenticationFilter.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/StatelessAuthenticationFilter.java index be64d3a65cac..244426082d06 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/StatelessAuthenticationFilter.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/StatelessAuthenticationFilter.java @@ -11,11 +11,11 @@ import java.sql.SQLException; import java.util.List; import java.util.UUID; -import javax.servlet.FilterChain; -import javax.servlet.ServletException; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; +import jakarta.servlet.FilterChain; +import jakarta.servlet.ServletException; +import jakarta.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletResponse; import org.apache.logging.log4j.LogManager; import org.apache.logging.log4j.Logger; import org.dspace.app.rest.utils.ContextUtil; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/StatelessLoginFilter.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/StatelessLoginFilter.java index 7dd5ee3beab1..cfae6bfcb42b 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/StatelessLoginFilter.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/StatelessLoginFilter.java @@ -8,11 +8,11 @@ package org.dspace.app.rest.security; import java.io.IOException; -import javax.servlet.FilterChain; -import javax.servlet.ServletException; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; +import jakarta.servlet.FilterChain; +import jakarta.servlet.ServletException; +import jakarta.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletResponse; import org.apache.logging.log4j.LogManager; import org.apache.logging.log4j.Logger; import org.springframework.security.authentication.AuthenticationManager; @@ -41,9 +41,20 @@ public class StatelessLoginFilter extends AbstractAuthenticationProcessingFilter public void afterPropertiesSet() { } - public StatelessLoginFilter(String url, AuthenticationManager authenticationManager, + /** + * Initialize a StatelessLoginFilter for the given URL and HTTP method. This login filter will ONLY attempt + * authentication for requests that match this URL and method. The URL & method are defined in the configuration + * in WebSecurityConfiguration. + * @see org.dspace.app.rest.security.WebSecurityConfiguration + * @param url URL path to attempt to authenticate (e.g. "/api/authn/login") + * @param httpMethod HTTP method to attempt to authentication (e.g. "POST") + * @param authenticationManager Spring Security AuthenticationManager to use for authentication + * @param restAuthenticationService DSpace RestAuthenticationService to use for authentication + */ + public StatelessLoginFilter(String url, String httpMethod, AuthenticationManager authenticationManager, RestAuthenticationService restAuthenticationService) { - super(new AntPathRequestMatcher(url)); + // NOTE: attemptAuthentication() below will only be triggered by requests that match both this URL and method + super(new AntPathRequestMatcher(url, httpMethod)); this.authenticationManager = authenticationManager; this.restAuthenticationService = restAuthenticationService; } diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/WebSecurityConfiguration.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/WebSecurityConfiguration.java index bf91cad5540e..4457b71d309b 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/WebSecurityConfiguration.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/WebSecurityConfiguration.java @@ -20,21 +20,21 @@ import org.springframework.context.annotation.Lazy; import org.springframework.http.HttpMethod; import org.springframework.http.HttpStatus; -import org.springframework.security.config.annotation.authentication.builders.AuthenticationManagerBuilder; +import org.springframework.security.authentication.AuthenticationManager; +import org.springframework.security.authentication.ProviderManager; +import org.springframework.security.config.Customizer; import org.springframework.security.config.annotation.web.builders.HttpSecurity; -import org.springframework.security.config.annotation.web.builders.WebSecurity; import org.springframework.security.config.annotation.web.configuration.EnableWebSecurity; -import org.springframework.security.config.annotation.web.configuration.WebSecurityConfigurerAdapter; import org.springframework.security.config.http.SessionCreationPolicy; +import org.springframework.security.web.SecurityFilterChain; import org.springframework.security.web.authentication.logout.HttpStatusReturningLogoutSuccessHandler; import org.springframework.security.web.authentication.logout.LogoutFilter; -import org.springframework.security.web.authentication.session.SessionAuthenticationStrategy; import org.springframework.security.web.csrf.CsrfTokenRepository; +import org.springframework.security.web.csrf.CsrfTokenRequestAttributeHandler; import org.springframework.security.web.util.matcher.AntPathRequestMatcher; /** - * Spring Security configuration for DSpace Server Webapp. The global method - * security is enabled by the {@link MethodSecurityConfig} class. + * Spring Security configuration for DSpace Server Webapp * * @author Frederic Van Reet (frederic dot vanreet at atmire dot com) * @author Tom Desair (tom dot desair at atmire dot com) @@ -42,7 +42,7 @@ @EnableWebSecurity @Configuration @EnableConfigurationProperties(SecurityProperties.class) -public class WebSecurityConfiguration extends WebSecurityConfigurerAdapter { +public class WebSecurityConfiguration { public static final String ADMIN_GRANT = "ADMIN"; public static final String AUTHENTICATED_GRANT = "AUTHENTICATED"; @@ -72,104 +72,108 @@ public class WebSecurityConfiguration extends WebSecurityConfigurerAdapter { @Value("${management.endpoints.web.base-path:/actuator}") private String actuatorBasePath; + /** + * Create a Spring Security AuthenticationManager with our custom AuthenticationProvider + * @return AuthenticationManager + */ + @Bean + public AuthenticationManager authenticationManager() { + ProviderManager manager = new ProviderManager(ePersonRestAuthenticationProvider); + return manager; - @Override - public void configure(WebSecurity webSecurity) throws Exception { - // Define URL patterns which Spring Security will ignore entirely. - webSecurity - .ignoring() - // These /login request types are purposefully unsecured, as they all throw errors. - .antMatchers(HttpMethod.GET, "/api/authn/login") - .antMatchers(HttpMethod.PUT, "/api/authn/login") - .antMatchers(HttpMethod.PATCH, "/api/authn/login") - .antMatchers(HttpMethod.DELETE, "/api/authn/login"); } + /** + * Bean to customize security on specific endpoints + * @param http HttpSecurity + */ + @Bean + public SecurityFilterChain filterChain(HttpSecurity http) throws Exception { + // Get the current AuthenticationManager (defined above) to apply filters below + AuthenticationManager authenticationManager = authenticationManager(); - @Override - protected void configure(HttpSecurity http) throws Exception { // Configure authentication requirements for ${dspace.server.url}/api/ URL only // NOTE: REST API is hardcoded to respond on /api/. Other modules (OAI, SWORD, IIIF, etc) use other root paths. - http.requestMatchers() - .antMatchers("/api/**", "/iiif/**", actuatorBasePath + "/**", "/signposting/**") - .and() - // Enable Spring Security authorization on these paths - .authorizeRequests() - // Allow POST by anyone on the login endpoint - .antMatchers(HttpMethod.POST,"/api/authn/login").permitAll() - // Everyone can call GET on the status endpoint (used to check your authentication status) - .antMatchers(HttpMethod.GET, "/api/authn/status").permitAll() - .antMatchers(HttpMethod.GET, actuatorBasePath + "/info").hasAnyAuthority(ADMIN_GRANT) - .and() + http.securityMatcher("/api/**", "/iiif/**", actuatorBasePath + "/**", "/signposting/**") + .authorizeHttpRequests((requests) -> requests + // Ensure /actuator/info endpoint is restricted to admins + .requestMatchers(new AntPathRequestMatcher(actuatorBasePath + "/info", HttpMethod.GET.name())) + .hasAnyAuthority(ADMIN_GRANT) + // All other requests should be permitted at this layer because we check permissions on each method + // via @PreAuthorize annotations. As this code runs first, we must permitAll() here in order to pass + // the request on to those annotations. + .anyRequest().permitAll()) // Tell Spring to not create Sessions - .sessionManagement().sessionCreationPolicy(SessionCreationPolicy.STATELESS).and() + .sessionManagement((session) -> session.sessionCreationPolicy(SessionCreationPolicy.STATELESS)) // Anonymous requests should have the "ANONYMOUS" security grant - .anonymous().authorities(ANONYMOUS_GRANT).and() + .anonymous((anonymous) -> anonymous.authorities(ANONYMOUS_GRANT)) // Wire up the HttpServletRequest with the current SecurityContext values - .servletApi().and() + .servletApi(Customizer.withDefaults()) // Enable CORS for Spring Security (see CORS settings in Application and ApplicationConfig) - .cors().and() + .cors(Customizer.withDefaults()) // Enable CSRF protection with custom csrfTokenRepository and custom sessionAuthenticationStrategy // (both are defined below as methods). // While we primarily use JWT in headers, CSRF protection is needed because we also support JWT via Cookies - .csrf() - .ignoringAntMatchers(configurationService.getArrayProperty("csrf.ignore-paths")) + .csrf((csrf) -> csrf + .ignoringRequestMatchers(configurationService.getArrayProperty("csrf.ignore-paths")) .csrfTokenRepository(this.csrfTokenRepository()) - .sessionAuthenticationStrategy(this.sessionAuthenticationStrategy()) - .ignoringRequestMatchers(this.dspaceCsrfRequestMatcher()) - .and() - .exceptionHandling() + .sessionAuthenticationStrategy(this.dSpaceCsrfAuthenticationStrategy()) + // Disable SpringSecurity BREACH protection, as this is not working well with Cookie-based storage. + // When enabled, BREACH protection causes the CSRF token to grow in size until UI errors occur. + // See https://github.com/DSpace/DSpace/issues/9450 + // NOTE: DSpace doesn't need BREACH protection as it's only necessary when sending the token via a + // request attribute (e.g. "_csrf") which the DSpace UI never does. + .csrfTokenRequestHandler(new CsrfTokenRequestAttributeHandler())) + .exceptionHandling((exceptionHandling) -> exceptionHandling // Return 401 on authorization failures with a correct WWWW-Authenticate header .authenticationEntryPoint(new DSpace401AuthenticationEntryPoint(restAuthenticationService)) // Custom handler for AccessDeniedExceptions, including CSRF exceptions .accessDeniedHandler(accessDeniedHandler) - .and() - + ) // Logout configuration - .logout() + .logout((logout) -> logout // On logout, clear the "session" salt .addLogoutHandler(customLogoutHandler) // Configure the logout entry point & require POST .logoutRequestMatcher(new AntPathRequestMatcher("/api/authn/logout", HttpMethod.POST.name())) // When logout is successful, return OK (204) status .logoutSuccessHandler(new HttpStatusReturningLogoutSuccessHandler(HttpStatus.NO_CONTENT)) - // Everyone can call this endpoint - .permitAll() - .and() - + ) // Add a filter before any request to handle DSpace IP-based authorization/authentication // (e.g. anonymous users may be added to special DSpace groups if they are in a given IP range) - .addFilterBefore(new AnonymousAdditionalAuthorizationFilter(authenticationManager(), authenticationService), + .addFilterBefore(new AnonymousAdditionalAuthorizationFilter(authenticationManager, authenticationService), StatelessAuthenticationFilter.class) - // Add a filter before our login endpoints to do the authentication based on the data in the HTTP request - .addFilterBefore(new StatelessLoginFilter("/api/authn/login", authenticationManager(), - restAuthenticationService), + // Add a filter before our login endpoints to do the authentication based on the data in the HTTP request. + // This login endpoint only responds to POST as it is used for PasswordAuthentication + .addFilterBefore(new StatelessLoginFilter("/api/authn/login", HttpMethod.POST.name(), + authenticationManager, restAuthenticationService), LogoutFilter.class) - // Add a filter before our shibboleth endpoints to do the authentication based on the data in the - // HTTP request - .addFilterBefore(new ShibbolethLoginFilter("/api/authn/shibboleth", authenticationManager(), - restAuthenticationService), + // Add a filter before our shibboleth endpoints to do the authentication based on the data in the HTTP + // request. This endpoint only responds to GET as the actual authentication is performed by Shibboleth, + // which then redirects to this endpoint to forward the authentication data to DSpace. + .addFilterBefore(new ShibbolethLoginFilter("/api/authn/shibboleth", HttpMethod.GET.name(), + authenticationManager, restAuthenticationService), LogoutFilter.class) - //Add a filter before our ORCID endpoints to do the authentication based on the data in the - // HTTP request - .addFilterBefore(new OrcidLoginFilter("/api/authn/orcid", authenticationManager(), - restAuthenticationService), + // Add a filter before our ORCID endpoints to do the authentication based on the data in the HTTP request. + // This endpoint only responds to GET as the actual authentication is performed by ORCID, which then + // redirects to this endpoint to forward the authentication data to DSpace. + .addFilterBefore(new OrcidLoginFilter("/api/authn/orcid", HttpMethod.GET.name(), + authenticationManager, restAuthenticationService), LogoutFilter.class) - .addFilterBefore(new OidcLoginFilter("/api/authn/oidc", authenticationManager(), - restAuthenticationService), + // Add a filter before our OIDC endpoints to do the authentication based on the data in the HTTP request. + // This endpoint only responds to GET as the actual authentication is performed by OIDC, which then + // redirects to this endpoint to forward the authentication data to DSpace. + .addFilterBefore(new OidcLoginFilter("/api/authn/oidc", HttpMethod.GET.name(), + authenticationManager, restAuthenticationService), LogoutFilter.class) // Add a custom Token based authentication filter based on the token previously given to the client // before each URL - .addFilterBefore(new StatelessAuthenticationFilter(authenticationManager(), restAuthenticationService, + .addFilterBefore(new StatelessAuthenticationFilter(authenticationManager, restAuthenticationService, ePersonRestAuthenticationProvider, requestService), StatelessLoginFilter.class) // Add a filter to verify that the user accepted terms and conditions .addFilterBefore(new UserAgreementFilter(configurationService), LogoutFilter.class); - } - - @Override - protected void configure(AuthenticationManagerBuilder auth) throws Exception { - auth.authenticationProvider(ePersonRestAuthenticationProvider); + return http.build(); } /** @@ -199,8 +203,13 @@ public DSpaceCsrfIgnoringRequestMatcher dspaceCsrfRequestMatcher() { /** * Returns a custom DSpaceCsrfAuthenticationStrategy, which ensures that (after authenticating) the CSRF token * is only refreshed when it is used (or attempted to be used) by the client. + * + * This is defined as a bean so that it can also be used in other code to reset CSRF Tokens, see + * JWTTokenRestAuthenticationServiceImpl */ - private SessionAuthenticationStrategy sessionAuthenticationStrategy() { + @Lazy + @Bean + public DSpaceCsrfAuthenticationStrategy dSpaceCsrfAuthenticationStrategy() { return new DSpaceCsrfAuthenticationStrategy(csrfTokenRepository()); } diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/WebSecurityExpressionEvaluator.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/WebSecurityExpressionEvaluator.java index 364e93e297d8..35772e41fd67 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/WebSecurityExpressionEvaluator.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/WebSecurityExpressionEvaluator.java @@ -8,10 +8,10 @@ package org.dspace.app.rest.security; import java.util.List; -import javax.servlet.FilterChain; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; +import jakarta.servlet.FilterChain; +import jakarta.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletResponse; import org.springframework.core.GenericTypeResolver; import org.springframework.expression.EvaluationContext; import org.springframework.expression.Expression; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/jwt/AuthenticationMethodClaimProvider.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/jwt/AuthenticationMethodClaimProvider.java index dd22a8a1deb7..6e1469fa9153 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/jwt/AuthenticationMethodClaimProvider.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/jwt/AuthenticationMethodClaimProvider.java @@ -9,9 +9,9 @@ import java.sql.SQLException; import java.text.ParseException; -import javax.servlet.http.HttpServletRequest; import com.nimbusds.jwt.JWTClaimsSet; +import jakarta.servlet.http.HttpServletRequest; import org.apache.logging.log4j.LogManager; import org.apache.logging.log4j.Logger; import org.dspace.authenticate.service.AuthenticationService; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/jwt/EPersonClaimProvider.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/jwt/EPersonClaimProvider.java index 39b61427b7bd..9a9142fbd1b1 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/jwt/EPersonClaimProvider.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/jwt/EPersonClaimProvider.java @@ -9,9 +9,9 @@ import java.sql.SQLException; import java.util.UUID; -import javax.servlet.http.HttpServletRequest; import com.nimbusds.jwt.JWTClaimsSet; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.core.Context; import org.dspace.eperson.EPerson; import org.dspace.eperson.service.EPersonService; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/jwt/JWTClaimProvider.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/jwt/JWTClaimProvider.java index f8ee6a44de3a..64df3b20eaf6 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/jwt/JWTClaimProvider.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/jwt/JWTClaimProvider.java @@ -8,9 +8,9 @@ package org.dspace.app.rest.security.jwt; import java.sql.SQLException; -import javax.servlet.http.HttpServletRequest; import com.nimbusds.jwt.JWTClaimsSet; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.core.Context; /** diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/jwt/JWTTokenHandler.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/jwt/JWTTokenHandler.java index 2b391514ecf4..2af761a0d40b 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/jwt/JWTTokenHandler.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/jwt/JWTTokenHandler.java @@ -13,7 +13,6 @@ import java.text.ParseException; import java.util.Date; import java.util.List; -import javax.servlet.http.HttpServletRequest; import com.nimbusds.jose.CompressionAlgorithm; import com.nimbusds.jose.EncryptionMethod; @@ -33,6 +32,7 @@ import com.nimbusds.jwt.JWTClaimsSet; import com.nimbusds.jwt.SignedJWT; import com.nimbusds.jwt.util.DateUtils; +import jakarta.servlet.http.HttpServletRequest; import org.apache.commons.codec.binary.Base64; import org.apache.commons.lang3.StringUtils; import org.apache.logging.log4j.LogManager; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/jwt/JWTTokenRestAuthenticationServiceImpl.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/jwt/JWTTokenRestAuthenticationServiceImpl.java index 866a66b2c832..6d0483da263b 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/jwt/JWTTokenRestAuthenticationServiceImpl.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/jwt/JWTTokenRestAuthenticationServiceImpl.java @@ -11,17 +11,18 @@ import java.sql.SQLException; import java.text.ParseException; import java.util.Iterator; -import javax.servlet.http.Cookie; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; -import javax.ws.rs.core.HttpHeaders; import com.nimbusds.jose.JOSEException; +import jakarta.servlet.http.Cookie; +import jakarta.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletResponse; +import jakarta.ws.rs.core.HttpHeaders; import org.apache.commons.lang3.StringUtils; import org.apache.logging.log4j.LogManager; import org.apache.logging.log4j.Logger; import org.dspace.app.rest.model.wrapper.AuthenticationToken; import org.dspace.app.rest.security.DSpaceAuthentication; +import org.dspace.app.rest.security.DSpaceCsrfAuthenticationStrategy; import org.dspace.app.rest.security.RestAuthenticationService; import org.dspace.app.rest.utils.ContextUtil; import org.dspace.authenticate.AuthenticationMethod; @@ -33,8 +34,6 @@ import org.springframework.beans.factory.annotation.Autowired; import org.springframework.context.annotation.Lazy; import org.springframework.http.ResponseCookie; -import org.springframework.security.web.csrf.CsrfToken; -import org.springframework.security.web.csrf.CsrfTokenRepository; import org.springframework.stereotype.Component; /** @@ -67,7 +66,7 @@ public class JWTTokenRestAuthenticationServiceImpl implements RestAuthentication @Lazy @Autowired - private CsrfTokenRepository csrfTokenRepository; + private DSpaceCsrfAuthenticationStrategy dspaceCsrfAuthenticationStrategy; @Override public void afterPropertiesSet() throws Exception { @@ -352,11 +351,8 @@ private boolean hasAuthorizationCookie(HttpServletRequest request) { * @param response current response */ private void resetCSRFToken(HttpServletRequest request, HttpServletResponse response) { - // Remove current CSRF token & generate a new one - // We do this as we want the token to change anytime you login or logout - csrfTokenRepository.saveToken(null, request, response); - CsrfToken newToken = csrfTokenRepository.generateToken(request); - csrfTokenRepository.saveToken(newToken, request, response); + // Use our custom CsrfAuthenticationStrategy class to force reset the CSRF token in Spring Security + dspaceCsrfAuthenticationStrategy.resetCSRFToken(request, response); } } diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/jwt/ShortLivedJWTTokenHandler.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/jwt/ShortLivedJWTTokenHandler.java index cbfb0347c8d6..082ffe511685 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/jwt/ShortLivedJWTTokenHandler.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/jwt/ShortLivedJWTTokenHandler.java @@ -8,7 +8,6 @@ package org.dspace.app.rest.security.jwt; import java.util.Date; -import javax.servlet.http.HttpServletRequest; import com.nimbusds.jose.JOSEException; import com.nimbusds.jose.JWSVerifier; @@ -16,6 +15,7 @@ import com.nimbusds.jwt.JWTClaimsSet; import com.nimbusds.jwt.SignedJWT; import com.nimbusds.jwt.util.DateUtils; +import jakarta.servlet.http.HttpServletRequest; import org.apache.commons.lang3.StringUtils; import org.dspace.core.Context; import org.dspace.eperson.EPerson; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/jwt/SpecialGroupClaimProvider.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/jwt/SpecialGroupClaimProvider.java index 4110a558a2cc..b1abc3d20b86 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/jwt/SpecialGroupClaimProvider.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/jwt/SpecialGroupClaimProvider.java @@ -13,9 +13,9 @@ import java.util.List; import java.util.UUID; import java.util.stream.Collectors; -import javax.servlet.http.HttpServletRequest; import com.nimbusds.jwt.JWTClaimsSet; +import jakarta.servlet.http.HttpServletRequest; import org.apache.commons.collections4.CollectionUtils; import org.apache.logging.log4j.LogManager; import org.apache.logging.log4j.Logger; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/signposting/controller/LinksetRestController.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/signposting/controller/LinksetRestController.java index 2a940d79aba4..b1731fb10bb7 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/signposting/controller/LinksetRestController.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/signposting/controller/LinksetRestController.java @@ -16,9 +16,9 @@ import java.util.List; import java.util.UUID; import java.util.stream.Collectors; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; +import jakarta.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletResponse; import org.dspace.app.rest.converter.ConverterService; import org.dspace.app.rest.signposting.converter.LinksetRestMessageConverter; import org.dspace.app.rest.signposting.model.Linkset; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/signposting/processor/SignPostingProcessor.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/signposting/processor/SignPostingProcessor.java index efcfd50ab512..a5cadf4627df 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/signposting/processor/SignPostingProcessor.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/signposting/processor/SignPostingProcessor.java @@ -8,8 +8,8 @@ package org.dspace.app.rest.signposting.processor; import java.util.List; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.signposting.model.LinksetNode; import org.dspace.content.DSpaceObject; import org.dspace.core.Context; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/signposting/processor/bitstream/BitstreamLinksetProcessor.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/signposting/processor/bitstream/BitstreamLinksetProcessor.java index c65191cb0749..97eb9f2a546d 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/signposting/processor/bitstream/BitstreamLinksetProcessor.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/signposting/processor/bitstream/BitstreamLinksetProcessor.java @@ -8,8 +8,8 @@ package org.dspace.app.rest.signposting.processor.bitstream; import java.util.List; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.apache.log4j.Logger; import org.dspace.app.rest.signposting.model.LinksetNode; import org.dspace.app.rest.signposting.model.LinksetRelationType; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/signposting/processor/bitstream/BitstreamParentItemProcessor.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/signposting/processor/bitstream/BitstreamParentItemProcessor.java index 815d7817d4cf..32928dfa8892 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/signposting/processor/bitstream/BitstreamParentItemProcessor.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/signposting/processor/bitstream/BitstreamParentItemProcessor.java @@ -8,8 +8,8 @@ package org.dspace.app.rest.signposting.processor.bitstream; import java.util.List; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.apache.log4j.Logger; import org.dspace.app.rest.signposting.model.LinksetNode; import org.dspace.app.rest.signposting.model.LinksetRelationType; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/signposting/processor/bitstream/BitstreamTypeProcessor.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/signposting/processor/bitstream/BitstreamTypeProcessor.java index 005a8009836d..8889a415d327 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/signposting/processor/bitstream/BitstreamTypeProcessor.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/signposting/processor/bitstream/BitstreamTypeProcessor.java @@ -8,8 +8,8 @@ package org.dspace.app.rest.signposting.processor.bitstream; import java.util.List; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.apache.commons.lang3.StringUtils; import org.apache.log4j.Logger; import org.dspace.app.rest.signposting.model.LinksetNode; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/signposting/processor/item/ItemAuthorProcessor.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/signposting/processor/item/ItemAuthorProcessor.java index 1bb215c46864..f3a9e35198a7 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/signposting/processor/item/ItemAuthorProcessor.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/signposting/processor/item/ItemAuthorProcessor.java @@ -14,8 +14,8 @@ import java.text.MessageFormat; import java.util.List; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.apache.log4j.Logger; import org.dspace.app.rest.signposting.model.LinksetNode; import org.dspace.app.rest.signposting.model.LinksetRelationType; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/signposting/processor/item/ItemContentBitstreamsProcessor.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/signposting/processor/item/ItemContentBitstreamsProcessor.java index 61bf371adbdf..0b91e57f7b3f 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/signposting/processor/item/ItemContentBitstreamsProcessor.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/signposting/processor/item/ItemContentBitstreamsProcessor.java @@ -9,8 +9,8 @@ import java.sql.SQLException; import java.util.List; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.apache.log4j.Logger; import org.dspace.app.rest.signposting.model.LinksetNode; import org.dspace.app.rest.signposting.model.LinksetRelationType; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/signposting/processor/item/ItemDescribedbyProcessor.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/signposting/processor/item/ItemDescribedbyProcessor.java index a16770c4d103..20091e6d0992 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/signposting/processor/item/ItemDescribedbyProcessor.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/signposting/processor/item/ItemDescribedbyProcessor.java @@ -8,8 +8,8 @@ package org.dspace.app.rest.signposting.processor.item; import java.util.List; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.apache.log4j.Logger; import org.dspace.app.rest.signposting.model.LinksetNode; import org.dspace.app.rest.signposting.model.LinksetRelationType; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/signposting/processor/item/ItemIdentifierProcessor.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/signposting/processor/item/ItemIdentifierProcessor.java index c5ebe958d97d..ba4794f37813 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/signposting/processor/item/ItemIdentifierProcessor.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/signposting/processor/item/ItemIdentifierProcessor.java @@ -12,8 +12,8 @@ import java.text.MessageFormat; import java.util.List; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.signposting.model.LinksetNode; import org.dspace.app.rest.signposting.model.LinksetRelationType; import org.dspace.content.Item; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/signposting/processor/item/ItemLicenseProcessor.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/signposting/processor/item/ItemLicenseProcessor.java index 1a26fa7695b1..b60ee35d7fe4 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/signposting/processor/item/ItemLicenseProcessor.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/signposting/processor/item/ItemLicenseProcessor.java @@ -8,8 +8,8 @@ package org.dspace.app.rest.signposting.processor.item; import java.util.List; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.apache.commons.lang3.StringUtils; import org.apache.log4j.Logger; import org.dspace.app.rest.signposting.model.LinksetNode; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/signposting/processor/item/ItemLinksetProcessor.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/signposting/processor/item/ItemLinksetProcessor.java index 9008a28e29a6..2d09e5616171 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/signposting/processor/item/ItemLinksetProcessor.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/signposting/processor/item/ItemLinksetProcessor.java @@ -8,8 +8,8 @@ package org.dspace.app.rest.signposting.processor.item; import java.util.List; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.apache.log4j.Logger; import org.dspace.app.rest.signposting.model.LinksetNode; import org.dspace.app.rest.signposting.model.LinksetRelationType; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/signposting/processor/item/ItemTypeProcessor.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/signposting/processor/item/ItemTypeProcessor.java index ddd2da12d59a..49b3612cd92c 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/signposting/processor/item/ItemTypeProcessor.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/signposting/processor/item/ItemTypeProcessor.java @@ -8,8 +8,8 @@ package org.dspace.app.rest.signposting.processor.item; import java.util.List; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.apache.commons.lang3.StringUtils; import org.apache.log4j.Logger; import org.dspace.app.rest.signposting.model.LinksetNode; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/signposting/processor/metadata/MetadataDescribesSignpostingProcessor.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/signposting/processor/metadata/MetadataDescribesSignpostingProcessor.java index baae16b88389..8bf123dd0478 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/signposting/processor/metadata/MetadataDescribesSignpostingProcessor.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/signposting/processor/metadata/MetadataDescribesSignpostingProcessor.java @@ -8,8 +8,8 @@ package org.dspace.app.rest.signposting.processor.metadata; import java.util.List; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.signposting.model.LinksetNode; import org.dspace.app.rest.signposting.model.LinksetRelationType; import org.dspace.content.Item; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/signposting/service/LinksetService.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/signposting/service/LinksetService.java index 33d0c10b7415..c6ad757e4e92 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/signposting/service/LinksetService.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/signposting/service/LinksetService.java @@ -8,8 +8,8 @@ package org.dspace.app.rest.signposting.service; import java.util.List; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.signposting.model.LinksetNode; import org.dspace.content.DSpaceObject; import org.dspace.content.Item; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/signposting/service/impl/LinksetServiceImpl.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/signposting/service/impl/LinksetServiceImpl.java index 399b7bd1e6b0..5b28817c9438 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/signposting/service/impl/LinksetServiceImpl.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/signposting/service/impl/LinksetServiceImpl.java @@ -11,8 +11,8 @@ import java.util.ArrayList; import java.util.Iterator; import java.util.List; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.apache.log4j.Logger; import org.dspace.app.rest.security.BitstreamMetadataReadPermissionEvaluatorPlugin; import org.dspace.app.rest.signposting.model.LinksetNode; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/DataProcessingStep.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/DataProcessingStep.java index 6b1c13c56dd0..7d78bd4b8cc7 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/DataProcessingStep.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/DataProcessingStep.java @@ -8,8 +8,8 @@ package org.dspace.app.rest.submit; import java.io.Serializable; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.model.patch.Operation; import org.dspace.app.util.SubmissionStepConfig; import org.dspace.content.InProgressSubmission; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/SubmissionService.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/SubmissionService.java index 4e9dfef189bc..f1776778048d 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/SubmissionService.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/SubmissionService.java @@ -13,8 +13,8 @@ import java.util.LinkedList; import java.util.List; import java.util.UUID; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.apache.commons.lang3.StringUtils; import org.apache.logging.log4j.Logger; import org.dspace.app.rest.converter.ConverterService; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/AccessConditionAddPatchOperation.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/AccessConditionAddPatchOperation.java index 8952ae16da56..c68fe24d6a00 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/AccessConditionAddPatchOperation.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/AccessConditionAddPatchOperation.java @@ -12,8 +12,8 @@ import java.util.ArrayList; import java.util.Date; import java.util.List; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.exception.UnprocessableEntityException; import org.dspace.app.rest.model.AccessConditionDTO; import org.dspace.app.rest.model.patch.LateObjectEvaluator; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/AccessConditionDiscoverableReplacePatchOperation.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/AccessConditionDiscoverableReplacePatchOperation.java index bcc0dce65fac..188a5e8dbe86 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/AccessConditionDiscoverableReplacePatchOperation.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/AccessConditionDiscoverableReplacePatchOperation.java @@ -7,8 +7,8 @@ */ package org.dspace.app.rest.submit.factory.impl; import java.util.Objects; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.apache.commons.lang3.BooleanUtils; import org.dspace.app.rest.exception.UnprocessableEntityException; import org.dspace.content.InProgressSubmission; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/AccessConditionRemovePatchOperation.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/AccessConditionRemovePatchOperation.java index 3986d008698b..0f36bcd9106f 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/AccessConditionRemovePatchOperation.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/AccessConditionRemovePatchOperation.java @@ -7,8 +7,8 @@ */ package org.dspace.app.rest.submit.factory.impl; import java.util.List; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.exception.UnprocessableEntityException; import org.dspace.app.rest.model.AccessConditionDTO; import org.dspace.authorize.ResourcePolicy; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/AccessConditionReplacePatchOperation.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/AccessConditionReplacePatchOperation.java index 22ea6a45af4f..ff34559a903b 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/AccessConditionReplacePatchOperation.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/AccessConditionReplacePatchOperation.java @@ -14,8 +14,8 @@ import java.util.Date; import java.util.List; import java.util.Objects; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.apache.commons.lang.StringUtils; import org.apache.logging.log4j.LogManager; import org.apache.logging.log4j.Logger; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/AddPatchOperation.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/AddPatchOperation.java index 354208c3e536..d903325edaff 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/AddPatchOperation.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/AddPatchOperation.java @@ -7,8 +7,7 @@ */ package org.dspace.app.rest.submit.factory.impl; -import javax.servlet.http.HttpServletRequest; - +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.model.patch.Operation; import org.dspace.content.InProgressSubmission; import org.dspace.core.Context; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/BitstreamMetadataValueAddPatchOperation.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/BitstreamMetadataValueAddPatchOperation.java index 08a557c033c3..c784865db7e1 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/BitstreamMetadataValueAddPatchOperation.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/BitstreamMetadataValueAddPatchOperation.java @@ -8,8 +8,8 @@ package org.dspace.app.rest.submit.factory.impl; import java.util.List; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.model.MetadataValueRest; import org.dspace.app.rest.model.patch.LateObjectEvaluator; import org.dspace.app.rest.utils.BitstreamMetadataValuePathUtils; @@ -69,10 +69,11 @@ void add(Context context, HttpServletRequest currentRequest, InProgressSubmissio // call with "-" or "index-based" we should receive only single // object member MetadataValueRest object = evaluateSingleObject((LateObjectEvaluator) value); + String mdString = split[3]; // check if is not empty List metadataByMetadataString = - bitstreamService.getMetadataByMetadataString(b,split[3]); - Assert.notEmpty(metadataByMetadataString); + bitstreamService.getMetadataByMetadataString(b,mdString); + Assert.notEmpty(metadataByMetadataString, "No metadata fields match ".concat(mdString)); if (split.length > 4) { String controlChar = split[4]; switch (controlChar) { diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/BitstreamMetadataValueMovePatchOperation.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/BitstreamMetadataValueMovePatchOperation.java index 0db4d48705e6..13d54970cbc6 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/BitstreamMetadataValueMovePatchOperation.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/BitstreamMetadataValueMovePatchOperation.java @@ -8,8 +8,8 @@ package org.dspace.app.rest.submit.factory.impl; import java.util.List; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.utils.BitstreamMetadataValuePathUtils; import org.dspace.content.Bitstream; import org.dspace.content.Bundle; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/BitstreamMetadataValueRemovePatchOperation.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/BitstreamMetadataValueRemovePatchOperation.java index f1fd7971f3e2..f787d48b08f0 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/BitstreamMetadataValueRemovePatchOperation.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/BitstreamMetadataValueRemovePatchOperation.java @@ -8,8 +8,8 @@ package org.dspace.app.rest.submit.factory.impl; import java.util.List; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.utils.BitstreamMetadataValuePathUtils; import org.dspace.content.Bitstream; import org.dspace.content.Bundle; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/BitstreamMetadataValueReplacePatchOperation.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/BitstreamMetadataValueReplacePatchOperation.java index 7027c8f917f1..ba6336d59b17 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/BitstreamMetadataValueReplacePatchOperation.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/BitstreamMetadataValueReplacePatchOperation.java @@ -9,8 +9,8 @@ import java.sql.SQLException; import java.util.List; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.model.MetadataValueRest; import org.dspace.app.rest.model.patch.LateObjectEvaluator; import org.dspace.app.rest.utils.BitstreamMetadataValuePathUtils; @@ -69,7 +69,7 @@ private void replace(Context context, Bitstream b, String[] split, Object value) throws SQLException, IllegalArgumentException, IllegalAccessException { String mdString = split[3]; List metadataByMetadataString = bitstreamService.getMetadataByMetadataString(b, mdString); - Assert.notEmpty(metadataByMetadataString); + Assert.notEmpty(metadataByMetadataString, "No metadata fields match ".concat(mdString)); int index = Integer.parseInt(split[4]); // if split size is one so we have a call to initialize or replace diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/BitstreamMovePatchOperation.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/BitstreamMovePatchOperation.java index 27d01a8581dc..5b6842b8e708 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/BitstreamMovePatchOperation.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/BitstreamMovePatchOperation.java @@ -7,8 +7,7 @@ */ package org.dspace.app.rest.submit.factory.impl; -import javax.servlet.http.HttpServletRequest; - +import jakarta.servlet.http.HttpServletRequest; import org.dspace.content.InProgressSubmission; import org.dspace.content.service.BundleService; import org.dspace.content.service.ItemService; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/BitstreamRemovePatchOperation.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/BitstreamRemovePatchOperation.java index be321e7ef0c0..ad0def2d8531 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/BitstreamRemovePatchOperation.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/BitstreamRemovePatchOperation.java @@ -8,8 +8,8 @@ package org.dspace.app.rest.submit.factory.impl; import java.util.List; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.content.Bitstream; import org.dspace.content.Bundle; import org.dspace.content.InProgressSubmission; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/BitstreamResourcePolicyAddPatchOperation.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/BitstreamResourcePolicyAddPatchOperation.java index ecda8a2d7081..2695a1adb207 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/BitstreamResourcePolicyAddPatchOperation.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/BitstreamResourcePolicyAddPatchOperation.java @@ -9,8 +9,8 @@ import java.util.ArrayList; import java.util.List; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.apache.commons.collections.CollectionUtils; import org.dspace.app.rest.model.AccessConditionDTO; import org.dspace.app.rest.model.patch.LateObjectEvaluator; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/BitstreamResourcePolicyRemovePatchOperation.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/BitstreamResourcePolicyRemovePatchOperation.java index 8de0de747b98..3ec44dd9d394 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/BitstreamResourcePolicyRemovePatchOperation.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/BitstreamResourcePolicyRemovePatchOperation.java @@ -8,8 +8,8 @@ package org.dspace.app.rest.submit.factory.impl; import java.util.List; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.model.AccessConditionDTO; import org.dspace.authorize.ResourcePolicy; import org.dspace.authorize.service.AuthorizeService; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/BitstreamResourcePolicyReplacePatchOperation.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/BitstreamResourcePolicyReplacePatchOperation.java index 19acc7b9f293..565287e9454a 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/BitstreamResourcePolicyReplacePatchOperation.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/BitstreamResourcePolicyReplacePatchOperation.java @@ -11,8 +11,8 @@ import java.util.Date; import java.util.Iterator; import java.util.List; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.model.ResourcePolicyRest; import org.dspace.app.rest.model.patch.LateObjectEvaluator; import org.dspace.authorize.ResourcePolicy; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/CCLicenseAddPatchOperation.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/CCLicenseAddPatchOperation.java index ec4dff9f6c51..0aab935298ae 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/CCLicenseAddPatchOperation.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/CCLicenseAddPatchOperation.java @@ -7,8 +7,7 @@ */ package org.dspace.app.rest.submit.factory.impl; -import javax.servlet.http.HttpServletRequest; - +import jakarta.servlet.http.HttpServletRequest; import org.apache.commons.lang3.StringUtils; import org.dspace.content.InProgressSubmission; import org.dspace.content.Item; @@ -26,7 +25,7 @@ * Example: * curl -X PATCH http://${dspace.server.url}/api/submission/workspaceitems/31599 -H "Content-Type: * application/json" -d '[{ "op": "add", "path": "/sections/cclicense/uri", - * "value":"http://creativecommons.org/licenses/by-nc-sa/3.0/us/"}]' + * "value":"https://creativecommons.org/licenses/by-nc-sa/3.0/us/"}]' * */ public class CCLicenseAddPatchOperation extends AddPatchOperation { diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/CCLicenseRemovePatchOperation.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/CCLicenseRemovePatchOperation.java index b17749fe4e04..57d9b60e3135 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/CCLicenseRemovePatchOperation.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/CCLicenseRemovePatchOperation.java @@ -7,8 +7,7 @@ */ package org.dspace.app.rest.submit.factory.impl; -import javax.servlet.http.HttpServletRequest; - +import jakarta.servlet.http.HttpServletRequest; import org.apache.commons.lang3.StringUtils; import org.dspace.content.InProgressSubmission; import org.dspace.content.Item; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/CollectionReplacePatchOperation.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/CollectionReplacePatchOperation.java index 3cadb443d9cc..a26982c37760 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/CollectionReplacePatchOperation.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/CollectionReplacePatchOperation.java @@ -8,8 +8,8 @@ package org.dspace.app.rest.submit.factory.impl; import java.sql.SQLException; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.util.DCInputsReaderException; import org.dspace.content.Collection; import org.dspace.content.InProgressSubmission; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/ItemMetadataValueAddPatchOperation.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/ItemMetadataValueAddPatchOperation.java index 8c819dddfd3d..370ecd7f607b 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/ItemMetadataValueAddPatchOperation.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/ItemMetadataValueAddPatchOperation.java @@ -12,8 +12,8 @@ import java.util.List; import java.util.Map; import java.util.Optional; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.apache.commons.lang3.StringUtils; import org.apache.logging.log4j.Logger; import org.dspace.app.rest.exception.UnprocessableEntityException; @@ -103,10 +103,11 @@ void add(Context context, HttpServletRequest currentRequest, InProgressSubmissio // call with "-" or "index-based" we should receive only single // object member MetadataValueRest object = evaluateSingleObject((LateObjectEvaluator) value); + String mdString = split[0]; // check if is not empty List metadataByMetadataString = itemService.getMetadataByMetadataString(source.getItem(), - split[0]); - Assert.notEmpty(metadataByMetadataString); + mdString); + Assert.notEmpty(metadataByMetadataString, "No metadata fields match ".concat(mdString)); if (split.length > 1) { String controlChar = split[1]; switch (controlChar) { diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/ItemMetadataValueMovePatchOperation.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/ItemMetadataValueMovePatchOperation.java index 17712f71482c..d38a5346429b 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/ItemMetadataValueMovePatchOperation.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/ItemMetadataValueMovePatchOperation.java @@ -7,8 +7,7 @@ */ package org.dspace.app.rest.submit.factory.impl; -import javax.servlet.http.HttpServletRequest; - +import jakarta.servlet.http.HttpServletRequest; import org.dspace.content.InProgressSubmission; import org.dspace.content.Item; import org.dspace.content.service.ItemService; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/ItemMetadataValueRemovePatchOperation.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/ItemMetadataValueRemovePatchOperation.java index 95206bc5ca9a..cf62f641b940 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/ItemMetadataValueRemovePatchOperation.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/ItemMetadataValueRemovePatchOperation.java @@ -7,8 +7,7 @@ */ package org.dspace.app.rest.submit.factory.impl; -import javax.servlet.http.HttpServletRequest; - +import jakarta.servlet.http.HttpServletRequest; import org.dspace.content.InProgressSubmission; import org.dspace.content.Item; import org.dspace.content.service.ItemService; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/ItemMetadataValueReplacePatchOperation.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/ItemMetadataValueReplacePatchOperation.java index 148984cbfd4d..415c5b6712ab 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/ItemMetadataValueReplacePatchOperation.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/ItemMetadataValueReplacePatchOperation.java @@ -8,8 +8,8 @@ package org.dspace.app.rest.submit.factory.impl; import java.util.List; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.model.MetadataValueRest; import org.dspace.app.rest.model.patch.LateObjectEvaluator; import org.dspace.content.InProgressSubmission; @@ -53,10 +53,10 @@ public class ItemMetadataValueReplacePatchOperation extends MetadataValueReplace void replace(Context context, HttpServletRequest currentRequest, InProgressSubmission source, String path, Object value) throws Exception { String[] split = getAbsolutePath(path).split("/"); - + String mdString = split[0]; List metadataByMetadataString = itemService.getMetadataByMetadataString(source.getItem(), - split[0]); - Assert.notEmpty(metadataByMetadataString); + mdString); + Assert.notEmpty(metadataByMetadataString, "No metadata fields match ".concat(mdString)); int index = Integer.parseInt(split[1]); // if split size is one so we have a call to initialize or replace diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/LicenseAddPatchOperation.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/LicenseAddPatchOperation.java index 6bbd4aae7572..bae40565294f 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/LicenseAddPatchOperation.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/LicenseAddPatchOperation.java @@ -7,8 +7,7 @@ */ package org.dspace.app.rest.submit.factory.impl; -import javax.servlet.http.HttpServletRequest; - +import jakarta.servlet.http.HttpServletRequest; import org.apache.commons.lang3.BooleanUtils; import org.dspace.content.InProgressSubmission; import org.dspace.content.Item; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/LicenseRemovePatchOperation.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/LicenseRemovePatchOperation.java index 39ffdbbd67d9..75c244bf9c6f 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/LicenseRemovePatchOperation.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/LicenseRemovePatchOperation.java @@ -7,8 +7,7 @@ */ package org.dspace.app.rest.submit.factory.impl; -import javax.servlet.http.HttpServletRequest; - +import jakarta.servlet.http.HttpServletRequest; import org.dspace.content.InProgressSubmission; import org.dspace.content.Item; import org.dspace.content.service.ItemService; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/LicenseReplacePatchOperation.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/LicenseReplacePatchOperation.java index bdb3051010a0..699b27ab0e22 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/LicenseReplacePatchOperation.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/LicenseReplacePatchOperation.java @@ -7,8 +7,7 @@ */ package org.dspace.app.rest.submit.factory.impl; -import javax.servlet.http.HttpServletRequest; - +import jakarta.servlet.http.HttpServletRequest; import org.apache.commons.lang3.BooleanUtils; import org.dspace.content.InProgressSubmission; import org.dspace.content.Item; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/MovePatchOperation.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/MovePatchOperation.java index 750a2bc71ba1..fc6bc2736e60 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/MovePatchOperation.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/MovePatchOperation.java @@ -7,8 +7,7 @@ */ package org.dspace.app.rest.submit.factory.impl; -import javax.servlet.http.HttpServletRequest; - +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.model.patch.MoveOperation; import org.dspace.app.rest.model.patch.Operation; import org.dspace.content.InProgressSubmission; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/NotifyServiceAddPatchOperation.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/NotifyServiceAddPatchOperation.java index 94f5e94d9b81..ff63fc49fb9c 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/NotifyServiceAddPatchOperation.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/NotifyServiceAddPatchOperation.java @@ -12,8 +12,8 @@ import java.util.List; import java.util.Set; import java.util.stream.Collectors; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.ldn.NotifyPatternToTrigger; import org.dspace.app.ldn.NotifyServiceEntity; import org.dspace.app.ldn.service.NotifyPatternToTriggerService; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/NotifyServiceRemovePatchOperation.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/NotifyServiceRemovePatchOperation.java index c1304f0b91f1..4c8a440a5643 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/NotifyServiceRemovePatchOperation.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/NotifyServiceRemovePatchOperation.java @@ -8,8 +8,8 @@ package org.dspace.app.rest.submit.factory.impl; import java.util.List; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.ldn.NotifyPatternToTrigger; import org.dspace.app.ldn.service.NotifyPatternToTriggerService; import org.dspace.app.rest.exception.UnprocessableEntityException; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/NotifyServiceReplacePatchOperation.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/NotifyServiceReplacePatchOperation.java index d7988da0029d..23946221fb68 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/NotifyServiceReplacePatchOperation.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/NotifyServiceReplacePatchOperation.java @@ -9,8 +9,8 @@ import java.util.List; import java.util.Set; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.ldn.NotifyPatternToTrigger; import org.dspace.app.ldn.NotifyServiceEntity; import org.dspace.app.ldn.service.NotifyPatternToTriggerService; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/PatchOperation.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/PatchOperation.java index 69b3b10627c3..cf4641da9bec 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/PatchOperation.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/PatchOperation.java @@ -9,8 +9,8 @@ import java.util.ArrayList; import java.util.List; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.model.patch.LateObjectEvaluator; import org.dspace.app.rest.model.patch.Operation; import org.dspace.content.InProgressSubmission; @@ -69,6 +69,15 @@ public String getAbsolutePath(String fullpath) { return absolutePath; } + public String getStepId(String fullpath) { + String[] path = fullpath.substring(1).split("/", 3); + String stepId = ""; + if (path.length > 1) { + stepId = path[1]; + } + return stepId; + } + protected abstract Class getArrayClassForEvaluation(); protected abstract Class getClassForEvaluation(); diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/PrimaryBitstreamAddPatchOperation.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/PrimaryBitstreamAddPatchOperation.java index 5653678a502a..6704c8c2bbcc 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/PrimaryBitstreamAddPatchOperation.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/PrimaryBitstreamAddPatchOperation.java @@ -13,8 +13,8 @@ import java.util.Objects; import java.util.Optional; import java.util.UUID; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.exception.UnprocessableEntityException; import org.dspace.content.Bitstream; import org.dspace.content.Bundle; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/PrimaryBitstreamRemovePatchOperation.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/PrimaryBitstreamRemovePatchOperation.java index 57b688898adc..c6c8f4d6c5ee 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/PrimaryBitstreamRemovePatchOperation.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/PrimaryBitstreamRemovePatchOperation.java @@ -10,8 +10,8 @@ import static org.dspace.core.Constants.CONTENT_BUNDLE_NAME; import java.util.List; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.content.Bundle; import org.dspace.content.InProgressSubmission; import org.dspace.content.Item; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/PrimaryBitstreamReplacePatchOperation.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/PrimaryBitstreamReplacePatchOperation.java index abd59101f448..8ebeb78d341b 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/PrimaryBitstreamReplacePatchOperation.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/PrimaryBitstreamReplacePatchOperation.java @@ -13,8 +13,8 @@ import java.util.Objects; import java.util.Optional; import java.util.UUID; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.exception.UnprocessableEntityException; import org.dspace.content.Bitstream; import org.dspace.content.Bundle; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/RemovePatchOperation.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/RemovePatchOperation.java index 0fa50562b3f4..b90fd1875f4e 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/RemovePatchOperation.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/RemovePatchOperation.java @@ -7,8 +7,7 @@ */ package org.dspace.app.rest.submit.factory.impl; -import javax.servlet.http.HttpServletRequest; - +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.model.patch.Operation; import org.dspace.content.InProgressSubmission; import org.dspace.core.Context; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/ReplacePatchOperation.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/ReplacePatchOperation.java index b5ca61f54359..f24fbde59aaa 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/ReplacePatchOperation.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/ReplacePatchOperation.java @@ -7,8 +7,7 @@ */ package org.dspace.app.rest.submit.factory.impl; -import javax.servlet.http.HttpServletRequest; - +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.model.patch.Operation; import org.dspace.content.InProgressSubmission; import org.dspace.core.Context; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/step/AccessConditionStep.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/step/AccessConditionStep.java index 070e4a3cbfeb..29353d0ffdf4 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/step/AccessConditionStep.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/step/AccessConditionStep.java @@ -9,8 +9,8 @@ import java.util.ArrayList; import java.util.List; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.apache.commons.lang.StringUtils; import org.dspace.app.rest.exception.UnprocessableEntityException; import org.dspace.app.rest.model.AccessConditionDTO; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/step/CCLicenseStep.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/step/CCLicenseStep.java index 34ae259090e9..357c0c48dd26 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/step/CCLicenseStep.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/step/CCLicenseStep.java @@ -7,8 +7,7 @@ */ package org.dspace.app.rest.submit.step; -import javax.servlet.http.HttpServletRequest; - +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.model.patch.Operation; import org.dspace.app.rest.model.step.DataCCLicense; import org.dspace.app.rest.submit.AbstractProcessingStep; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/step/CollectionStep.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/step/CollectionStep.java index 09e19f298012..b7b93fe2d3ff 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/step/CollectionStep.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/step/CollectionStep.java @@ -8,8 +8,8 @@ package org.dspace.app.rest.submit.step; import java.util.UUID; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.model.patch.Operation; import org.dspace.app.rest.submit.DataProcessingStep; import org.dspace.app.rest.submit.SubmissionService; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/step/DescribeStep.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/step/DescribeStep.java index 98e62da012b5..2deda0797713 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/step/DescribeStep.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/step/DescribeStep.java @@ -10,8 +10,8 @@ import java.util.ArrayList; import java.util.List; import java.util.Optional; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.apache.commons.lang3.StringUtils; import org.apache.logging.log4j.Logger; import org.dspace.app.rest.exception.UnprocessableEntityException; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/step/DuplicateDetectionStep.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/step/DuplicateDetectionStep.java index d7ecefa78289..032a27f83cea 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/step/DuplicateDetectionStep.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/step/DuplicateDetectionStep.java @@ -7,9 +7,8 @@ */ package org.dspace.app.rest.submit.step; -import javax.servlet.ServletException; -import javax.servlet.http.HttpServletRequest; - +import jakarta.servlet.ServletException; +import jakarta.servlet.http.HttpServletRequest; import org.apache.logging.log4j.LogManager; import org.apache.logging.log4j.Logger; import org.dspace.app.rest.model.patch.Operation; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/step/LicenseStep.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/step/LicenseStep.java index 053530d862fa..f374dcd7881c 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/step/LicenseStep.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/step/LicenseStep.java @@ -7,8 +7,7 @@ */ package org.dspace.app.rest.submit.step; -import javax.servlet.http.HttpServletRequest; - +import jakarta.servlet.http.HttpServletRequest; import org.atteo.evo.inflector.English; import org.dspace.app.rest.exception.UnprocessableEntityException; import org.dspace.app.rest.model.BitstreamRest; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/step/NotifyStep.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/step/NotifyStep.java index b3e3d06c4727..e6297217a458 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/step/NotifyStep.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/step/NotifyStep.java @@ -7,8 +7,7 @@ */ package org.dspace.app.rest.submit.step; -import javax.servlet.http.HttpServletRequest; - +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.model.patch.Operation; import org.dspace.app.rest.model.step.DataNotify; import org.dspace.app.rest.submit.AbstractProcessingStep; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/step/SherpaPolicyStep.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/step/SherpaPolicyStep.java index d37182904bf0..206b3fab5974 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/step/SherpaPolicyStep.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/step/SherpaPolicyStep.java @@ -8,8 +8,8 @@ package org.dspace.app.rest.submit.step; import java.util.Objects; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.model.patch.Operation; import org.dspace.app.rest.model.step.SherpaPolicy; import org.dspace.app.rest.submit.AbstractProcessingStep; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/step/ShowIdentifiersStep.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/step/ShowIdentifiersStep.java index e63d38ab2e36..47eac49f499c 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/step/ShowIdentifiersStep.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/step/ShowIdentifiersStep.java @@ -10,8 +10,8 @@ import java.sql.SQLException; import java.util.Arrays; import java.util.List; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.apache.commons.lang.StringUtils; import org.apache.logging.log4j.LogManager; import org.apache.logging.log4j.Logger; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/step/UploadStep.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/step/UploadStep.java index ae6a564a7e2d..e0a9cb17e01c 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/step/UploadStep.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/step/UploadStep.java @@ -11,8 +11,8 @@ import java.io.InputStream; import java.util.List; import java.util.Objects; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.apache.commons.lang3.StringUtils; import org.apache.logging.log4j.Logger; import org.dspace.app.rest.exception.UnprocessableEntityException; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/utils/BitstreamMetadataValuePathUtils.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/utils/BitstreamMetadataValuePathUtils.java index fcd3830d268f..c1c05c41f426 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/utils/BitstreamMetadataValuePathUtils.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/utils/BitstreamMetadataValuePathUtils.java @@ -11,6 +11,7 @@ import org.dspace.app.util.DCInputSet; import org.dspace.app.util.DCInputsReader; import org.dspace.app.util.DCInputsReaderException; +import org.dspace.submit.model.UploadConfiguration; import org.dspace.submit.model.UploadConfigurationService; import org.springframework.beans.factory.annotation.Autowired; @@ -33,22 +34,22 @@ public class BitstreamMetadataValuePathUtils { /** * Method to verify that the path included in the patch operation is supported * by the submission configuration of the upload section - * - * @param uploadStepId the name of the upload configuration + * + * @param stepId the name of the upload configuration * @param absolutePath the path in the json patch operation * @throws DCInputsReaderException if an error occurs reading the * submission configuration * @throws UnprocessableEntityException if the path is invalid */ - public void validate(String uploadStepId, String absolutePath) throws DCInputsReaderException { + public void validate(String stepId, String absolutePath) throws DCInputsReaderException { + UploadConfiguration uploadService = uploadConfigurationService.getMap().get(stepId); + DCInputSet inputConfig = inputReader.getInputsByFormName(uploadService.getMetadata()); String[] split = absolutePath.split("/"); - String metadataSubmissionForm = uploadConfigurationService.getMap().get(uploadStepId).getMetadata(); - DCInputSet inputConfig = inputReader.getInputsByFormName(metadataSubmissionForm); // according to the rest contract the absolute path must be something like files/:idx/metadata/dc.title if (split.length >= 4) { if (!inputConfig.isFieldPresent(split[3])) { throw new UnprocessableEntityException("The field " + split[3] + " is not present in section " - + metadataSubmissionForm); + + stepId); } } else { throw new UnprocessableEntityException("The path " + absolutePath + " cannot be patched "); diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/utils/ContextUtil.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/utils/ContextUtil.java index 879172dabd94..80d55267d4f1 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/utils/ContextUtil.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/utils/ContextUtil.java @@ -12,10 +12,10 @@ import java.sql.SQLException; import java.util.Enumeration; import java.util.Locale; -import javax.servlet.ServletException; -import javax.servlet.ServletRequest; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.ServletException; +import jakarta.servlet.ServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.apache.commons.lang3.StringUtils; import org.apache.logging.log4j.Logger; import org.dspace.core.Context; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/utils/DSpaceAPIRequestLoggingFilter.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/utils/DSpaceAPIRequestLoggingFilter.java index 6dfebe320354..36888a740376 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/utils/DSpaceAPIRequestLoggingFilter.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/utils/DSpaceAPIRequestLoggingFilter.java @@ -8,8 +8,8 @@ package org.dspace.app.rest.utils; import java.util.UUID; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.apache.commons.lang3.StringUtils; import org.apache.logging.log4j.ThreadContext; import org.dspace.services.ConfigurationService; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/utils/DSpaceConfigurationInitializer.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/utils/DSpaceConfigurationInitializer.java index d63dc8c55a11..c04ac976e0ac 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/utils/DSpaceConfigurationInitializer.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/utils/DSpaceConfigurationInitializer.java @@ -8,7 +8,7 @@ package org.dspace.app.rest.utils; import org.apache.commons.configuration2.Configuration; -import org.apache.commons.configuration2.spring.ConfigurationPropertySource; +import org.dspace.servicemanager.config.DSpaceConfigurationPropertySource; import org.dspace.services.ConfigurationService; import org.dspace.services.factory.DSpaceServicesFactory; import org.springframework.context.ApplicationContextInitializer; @@ -34,8 +34,8 @@ public void initialize(final ConfigurableApplicationContext applicationContext) Configuration configuration = configurationService.getConfiguration(); // Create an Apache Commons Configuration Property Source from our configuration - ConfigurationPropertySource apacheCommonsConfigPropertySource = - new ConfigurationPropertySource(configuration.getClass().getName(), configuration); + DSpaceConfigurationPropertySource apacheCommonsConfigPropertySource = + new DSpaceConfigurationPropertySource(configuration.getClass().getName(), configuration); // Prepend it to the Environment's list of PropertySources // NOTE: This is added *first* in the list so that settings in DSpace's ConfigurationService *override* diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/utils/HttpHeadersInitializer.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/utils/HttpHeadersInitializer.java index 662223d187f5..d1b80c36750b 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/utils/HttpHeadersInitializer.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/utils/HttpHeadersInitializer.java @@ -7,17 +7,17 @@ */ package org.dspace.app.rest.utils; +import static jakarta.mail.internet.MimeUtility.encodeText; import static java.util.Objects.isNull; import static java.util.Objects.nonNull; -import static javax.mail.internet.MimeUtility.encodeText; import java.io.IOException; import java.util.Arrays; import java.util.Collections; import java.util.Objects; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; +import jakarta.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletResponse; import org.apache.commons.lang3.StringUtils; import org.apache.logging.log4j.LogManager; import org.apache.logging.log4j.Logger; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/utils/ScopeResolver.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/utils/ScopeResolver.java index d604ff2066c2..ace5194e0923 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/utils/ScopeResolver.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/utils/ScopeResolver.java @@ -40,6 +40,18 @@ public class ScopeResolver { @Autowired ItemService itemService; + /** + * Returns an IndexableObject corresponding to the community or collection + * of the given scope, or null if the scope is not a valid UUID, or is a + * valid UUID that does not correspond to a community of collection. + * + * @param context the DSpace context + * @param scope a String containing the UUID of the community or collection + * to return. + * @return an IndexableObject corresponding to the community or collection + * of the given scope, or null if the scope is not a valid UUID, or is a + * valid UUID that does not correspond to a community of collection. + */ public IndexableObject resolveScope(Context context, String scope) { IndexableObject scopeObj = null; if (StringUtils.isNotBlank(scope)) { @@ -48,6 +60,16 @@ public IndexableObject resolveScope(Context context, String scope) { scopeObj = new IndexableCommunity(communityService.find(context, uuid)); if (scopeObj.getIndexedObject() == null) { scopeObj = new IndexableCollection(collectionService.find(context, uuid)); + if (scopeObj.getIndexedObject() == null) { + // Can't find the UUID as a community or collection + // so log and return null + log.warn( + "The given scope string " + + StringUtils.trimToEmpty(scope) + + " is not a collection or community UUID." + ); + scopeObj = null; + } } if (scopeObj.getIndexedObject() == null) { scopeObj = new IndexableItem(itemService.find(context, uuid)); diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/utils/Utils.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/utils/Utils.java index 8ca521cf1f74..0bfbe66b243b 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/utils/Utils.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/utils/Utils.java @@ -43,10 +43,10 @@ import java.util.Set; import java.util.TreeSet; import java.util.UUID; -import javax.annotation.Nullable; -import javax.servlet.ServletRequest; -import javax.servlet.http.HttpServletRequest; +import jakarta.annotation.Nullable; +import jakarta.servlet.ServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.apache.commons.lang3.StringUtils; import org.apache.logging.log4j.LogManager; import org.apache.logging.log4j.Logger; diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/opensearch/OpenSearchControllerIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/opensearch/OpenSearchControllerIT.java index 1ddea619d2fc..645d52df59f1 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/opensearch/OpenSearchControllerIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/opensearch/OpenSearchControllerIT.java @@ -96,7 +96,12 @@ public void findResultSimpleTest() throws Exception { Community child1 = CommunityBuilder.createSubCommunity(context, parentCommunity) .withName("Sub Community") .build(); - Collection col1 = CollectionBuilder.createCollection(context, child1).withName("Collection 1").build(); + // Add a fake logo to the Collection + Collection col1 = CollectionBuilder.createCollection(context, child1) + .withName("Collection 1") + .withLogo("logo_collection") + .build(); + String colLogoUuid = col1.getLogo().getID().toString(); Item publicItem1 = ItemBuilder.createItem(context, col1) .withTitle("Boars at Yellowstone") @@ -118,10 +123,24 @@ public void findResultSimpleTest() throws Exception { .andExpect(xpath("feed/Query/@searchTerms").string("Yellowstone")) .andExpect(xpath("feed/totalResults").string("2")) ; + + // When we search at the Collection level (scope = Collection UUID) + getClient().perform(get("/opensearch/search") + .param("scope", col1.getID().toString()) + .param("query", "Yellowstone")) + //The status has to be 200 OK + .andExpect(status().isOk()) + // We expect the content type to be "application/atom+xml;charset=UTF-8" + .andExpect(content().contentType("application/atom+xml;charset=UTF-8")) + .andExpect(xpath("feed/Query/@searchTerms").string("Yellowstone")) + .andExpect(xpath("feed/totalResults").string("2")) + // We expect feed will have the Collection logo + .andExpect(xpath("feed/logo") + .string("http://localhost:4000/bitstreams/" + colLogoUuid + "/download")) + ; } // This test does not find the record, so there are obviously issues with special chars - @Ignore @Test public void findResultWithSpecialCharsTest() throws Exception { //Turn off the authorization system, otherwise we can't make the objects @@ -144,12 +163,12 @@ public void findResultWithSpecialCharsTest() throws Exception { .build(); //When we call the root endpoint getClient().perform(get("/opensearch/search") - .param("query", "Bär")) + .param("query", "Bären")) //The status has to be 200 OK .andExpect(status().isOk()) //We expect the content type to be "application/atom+xml;charset=UTF-8" .andExpect(content().contentType("application/atom+xml;charset=UTF-8")) - .andExpect(xpath("feed/Query/@searchTerms").string("B%C3%A4r")) + .andExpect(xpath("feed/Query/@searchTerms").string("B%C3%A4ren")) .andExpect(xpath("feed/totalResults").string("1")) ; } @@ -269,4 +288,32 @@ public void emptyDescriptionTest() throws Exception { .andExpect(status().isOk()) .andExpect(xpath("rss/channel/description").string("No Description")); } + + @Test + public void scopeNotCommunityOrCollectionUUIDTest() throws Exception { + // Tests that a OpenSearch response with 1 result (equivalent to an + // unscoped request) is returned if the "scope" UUID is a + // validly-formatted UUID, but not a community or collection UUID. + context.turnOffAuthorisationSystem(); + parentCommunity = CommunityBuilder.createCommunity(context) + .withName("Parent Community") + .build(); + Collection collection1 = CollectionBuilder.createCollection(context, parentCommunity).withName("Collection 1") + .build(); + + Item publicItem1 = ItemBuilder.createItem(context, collection1) + .withTitle("Boars at Yellowstone") + .withIssueDate("2017-10-17") + .withAuthor("Ballini, Andreas").withAuthor("Moriarti, Susan") + .build(); + + // UUID is valid, but not a community or collection UUID + String testUUID = "b68f0d1c-7316-41dc-835d-46b79b35642e"; + + getClient().perform(get("/opensearch/search") + .param("scope", testUUID) + .param("query", "*")) + .andExpect(status().isOk()) + .andExpect(xpath("feed/totalResults").string("1")); + } } diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rdf/RdfIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rdf/RdfIT.java index 85ab3dcadd78..8db30d4ffb03 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rdf/RdfIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rdf/RdfIT.java @@ -117,7 +117,7 @@ public void serializationTest() throws Exception { // Turtle response should include the RDF identifier of Community assertThat(response.getBody(), containsString(communityIdentifier)); // Turtle response should also note that this Community is part of our Site object - assertThat(response.getBody(), containsString("dspace:isPartOfRepository <" + siteIdentifier + "> ;")); + assertThat(response.getBody(), containsString("dspace:isPartOfRepository <" + siteIdentifier + ">;")); } @Test diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/ADSImportMetadataSourceServiceIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/ADSImportMetadataSourceServiceIT.java index 4878cdecab83..892e83c79da0 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/ADSImportMetadataSourceServiceIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/ADSImportMetadataSourceServiceIT.java @@ -17,8 +17,8 @@ import java.util.Arrays; import java.util.Collection; import java.util.List; -import javax.el.MethodNotFoundException; +import jakarta.el.MethodNotFoundException; import org.apache.commons.io.IOUtils; import org.apache.http.client.methods.CloseableHttpResponse; import org.apache.http.impl.client.CloseableHttpClient; diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/AuthenticationRestControllerIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/AuthenticationRestControllerIT.java index 05dab9905681..227c5ad9ed83 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/AuthenticationRestControllerIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/AuthenticationRestControllerIT.java @@ -25,12 +25,11 @@ import static org.junit.Assert.assertNotEquals; import static org.junit.Assert.assertNotNull; import static org.junit.Assert.assertTrue; -import static org.springframework.security.test.web.servlet.request.SecurityMockMvcRequestPostProcessors.csrf; -import static org.springframework.test.web.servlet.request.MockMvcRequestBuilders.delete; import static org.springframework.test.web.servlet.request.MockMvcRequestBuilders.get; import static org.springframework.test.web.servlet.request.MockMvcRequestBuilders.post; import static org.springframework.test.web.servlet.result.MockMvcResultMatchers.content; import static org.springframework.test.web.servlet.result.MockMvcResultMatchers.cookie; +import static org.springframework.test.web.servlet.request.MockMvcRequestBuilders.delete; import static org.springframework.test.web.servlet.result.MockMvcResultMatchers.header; import static org.springframework.test.web.servlet.result.MockMvcResultMatchers.jsonPath; import static org.springframework.test.web.servlet.result.MockMvcResultMatchers.redirectedUrl; @@ -41,11 +40,11 @@ import java.util.Base64; import java.util.Map; import java.util.concurrent.atomic.AtomicReference; -import javax.servlet.http.Cookie; import com.fasterxml.jackson.databind.ObjectMapper; import com.nimbusds.jwt.JWTClaimsSet; import com.nimbusds.jwt.SignedJWT; +import jakarta.servlet.http.Cookie; import org.apache.commons.codec.CharEncoding; import org.apache.commons.io.IOUtils; import org.dspace.app.rest.authorization.Authorization; @@ -786,7 +785,7 @@ public void testRefreshTokenWithInvalidCSRF() throws Exception { // POSTing to /login should be a valid request...it just refreshes your token (see testRefreshToken()) // However, in this case, we are POSTing with an *INVALID* CSRF Token in Header. - getClient().perform(post("/api/authn/login").with(csrf().useInvalidToken().asHeader()) + getClient().perform(post("/api/authn/login").with(invalidCsrfToken()) .secure(true) .cookie(cookies)) // Should return a 403 Forbidden, for an invalid CSRF token @@ -1396,9 +1395,7 @@ public void testShortLivedTokenWithCSRFSentViaParam() throws Exception { // Same request as prior method, but this time we are sending the CSRF token as a querystring param. // NOTE: getClient() method defaults to sending CSRF tokens as Headers, so we are overriding its behavior here - getClient(token).perform(post("/api/authn/shortlivedtokens") - .with(csrf()) - .cookie(new Cookie("DSPACE-XSRF-COOKIE", "e35a7170-3409-4bcf-9283-d63a4a8707dd"))) + getClient(token).perform(post("/api/authn/shortlivedtokens").with(validCsrfTokenViaParam())) // BECAUSE we sent the CSRF token on querystring, it should be regenerated & a new token // is sent back (in cookie and header). .andExpect(cookie().exists("DSPACE-XSRF-COOKIE")) diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/BitstreamControllerIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/BitstreamControllerIT.java index a326d195c2a0..c31bb61f060e 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/BitstreamControllerIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/BitstreamControllerIT.java @@ -302,25 +302,25 @@ public void putOnBitstreamInOneBundle() throws Exception { .withPassword("test") .withNameInMetadata("Bundle", "Put").build(); - ResourcePolicyBuilder.createResourcePolicy(context).withUser(putBundlePerson) + ResourcePolicyBuilder.createResourcePolicy(context, putBundlePerson, null) .withAction(Constants.REMOVE) .withDspaceObject(bundle1).build(); - ResourcePolicyBuilder.createResourcePolicy(context).withUser(putBundlePerson) + ResourcePolicyBuilder.createResourcePolicy(context, putBundlePerson, null) .withAction(Constants.WRITE) .withDspaceObject(bundle1).build(); - ResourcePolicyBuilder.createResourcePolicy(context).withUser(putBundlePerson) + ResourcePolicyBuilder.createResourcePolicy(context, putBundlePerson, null) .withAction(Constants.WRITE) .withDspaceObject(targetBundle).build(); - ResourcePolicyBuilder.createResourcePolicy(context).withUser(putBundlePerson) + ResourcePolicyBuilder.createResourcePolicy(context, putBundlePerson, null) .withAction(Constants.ADD) .withDspaceObject(targetBundle).build(); - ResourcePolicyBuilder.createResourcePolicy(context).withUser(putBundlePerson) + ResourcePolicyBuilder.createResourcePolicy(context, putBundlePerson, null) .withAction(Constants.WRITE) .withDspaceObject(bitstream).build(); - ResourcePolicyBuilder.createResourcePolicy(context).withUser(putBundlePerson) + ResourcePolicyBuilder.createResourcePolicy(context, putBundlePerson, null) .withAction(Constants.WRITE) .withDspaceObject(publicItem1).build(); - ResourcePolicyBuilder.createResourcePolicy(context).withUser(putBundlePerson) + ResourcePolicyBuilder.createResourcePolicy(context, putBundlePerson, null) .withAction(Constants.WRITE) .withDspaceObject(targetItem).build(); @@ -471,31 +471,31 @@ public void putOnBitstreamInMultipleBundles() throws Exception { .withPassword("test") .withNameInMetadata("Bundle", "Put").build(); - ResourcePolicyBuilder.createResourcePolicy(context).withUser(putBundlePerson) + ResourcePolicyBuilder.createResourcePolicy(context, putBundlePerson, null) .withAction(Constants.REMOVE) .withDspaceObject(bundle1).build(); - ResourcePolicyBuilder.createResourcePolicy(context).withUser(putBundlePerson) + ResourcePolicyBuilder.createResourcePolicy(context, putBundlePerson, null) .withAction(Constants.WRITE) .withDspaceObject(bundle1).build(); - ResourcePolicyBuilder.createResourcePolicy(context).withUser(putBundlePerson) + ResourcePolicyBuilder.createResourcePolicy(context, putBundlePerson, null) .withAction(Constants.REMOVE) .withDspaceObject(bundle2).build(); - ResourcePolicyBuilder.createResourcePolicy(context).withUser(putBundlePerson) + ResourcePolicyBuilder.createResourcePolicy(context, putBundlePerson, null) .withAction(Constants.WRITE) .withDspaceObject(bundle2).build(); - ResourcePolicyBuilder.createResourcePolicy(context).withUser(putBundlePerson) + ResourcePolicyBuilder.createResourcePolicy(context, putBundlePerson, null) .withAction(Constants.WRITE) .withDspaceObject(targetBundle).build(); - ResourcePolicyBuilder.createResourcePolicy(context).withUser(putBundlePerson) + ResourcePolicyBuilder.createResourcePolicy(context, putBundlePerson, null) .withAction(Constants.ADD) .withDspaceObject(targetBundle).build(); - ResourcePolicyBuilder.createResourcePolicy(context).withUser(putBundlePerson) + ResourcePolicyBuilder.createResourcePolicy(context, putBundlePerson, null) .withAction(Constants.WRITE) .withDspaceObject(bitstream).build(); - ResourcePolicyBuilder.createResourcePolicy(context).withUser(putBundlePerson) + ResourcePolicyBuilder.createResourcePolicy(context, putBundlePerson, null) .withAction(Constants.WRITE) .withDspaceObject(publicItem1).build(); - ResourcePolicyBuilder.createResourcePolicy(context).withUser(putBundlePerson) + ResourcePolicyBuilder.createResourcePolicy(context, putBundlePerson, null) .withAction(Constants.WRITE) .withDspaceObject(targetItem).build(); @@ -592,25 +592,25 @@ public void putOnBitstreamInNoBundle() throws Exception { .withPassword("test") .withNameInMetadata("Bundle", "Put").build(); - ResourcePolicyBuilder.createResourcePolicy(context).withUser(putBundlePerson) + ResourcePolicyBuilder.createResourcePolicy(context, putBundlePerson, null) .withAction(Constants.REMOVE) .withDspaceObject(bundle1).build(); - ResourcePolicyBuilder.createResourcePolicy(context).withUser(putBundlePerson) + ResourcePolicyBuilder.createResourcePolicy(context, putBundlePerson, null) .withAction(Constants.WRITE) .withDspaceObject(bundle1).build(); - ResourcePolicyBuilder.createResourcePolicy(context).withUser(putBundlePerson) + ResourcePolicyBuilder.createResourcePolicy(context, putBundlePerson, null) .withAction(Constants.WRITE) .withDspaceObject(targetBundle).build(); - ResourcePolicyBuilder.createResourcePolicy(context).withUser(putBundlePerson) + ResourcePolicyBuilder.createResourcePolicy(context, putBundlePerson, null) .withAction(Constants.ADD) .withDspaceObject(targetBundle).build(); - ResourcePolicyBuilder.createResourcePolicy(context).withUser(putBundlePerson) + ResourcePolicyBuilder.createResourcePolicy(context, putBundlePerson, null) .withAction(Constants.WRITE) .withDspaceObject(bitstream).build(); - ResourcePolicyBuilder.createResourcePolicy(context).withUser(putBundlePerson) + ResourcePolicyBuilder.createResourcePolicy(context, putBundlePerson, null) .withAction(Constants.WRITE) .withDspaceObject(publicItem1).build(); - ResourcePolicyBuilder.createResourcePolicy(context).withUser(putBundlePerson) + ResourcePolicyBuilder.createResourcePolicy(context, putBundlePerson, null) .withAction(Constants.WRITE) .withDspaceObject(targetItem).build(); @@ -708,22 +708,22 @@ public void putOnBitstreamInOneBundleWithNoRemoveRights() throws Exception { .withPassword("test") .withNameInMetadata("Bundle", "Put").build(); - ResourcePolicyBuilder.createResourcePolicy(context).withUser(putBundlePerson) + ResourcePolicyBuilder.createResourcePolicy(context, putBundlePerson, null) .withAction(Constants.WRITE) .withDspaceObject(bundle1).build(); - ResourcePolicyBuilder.createResourcePolicy(context).withUser(putBundlePerson) + ResourcePolicyBuilder.createResourcePolicy(context, putBundlePerson, null) .withAction(Constants.WRITE) .withDspaceObject(targetBundle).build(); - ResourcePolicyBuilder.createResourcePolicy(context).withUser(putBundlePerson) + ResourcePolicyBuilder.createResourcePolicy(context, putBundlePerson, null) .withAction(Constants.ADD) .withDspaceObject(targetBundle).build(); - ResourcePolicyBuilder.createResourcePolicy(context).withUser(putBundlePerson) + ResourcePolicyBuilder.createResourcePolicy(context, putBundlePerson, null) .withAction(Constants.WRITE) .withDspaceObject(bitstream).build(); - ResourcePolicyBuilder.createResourcePolicy(context).withUser(putBundlePerson) + ResourcePolicyBuilder.createResourcePolicy(context, putBundlePerson, null) .withAction(Constants.WRITE) .withDspaceObject(publicItem1).build(); - ResourcePolicyBuilder.createResourcePolicy(context).withUser(putBundlePerson) + ResourcePolicyBuilder.createResourcePolicy(context, putBundlePerson, null) .withAction(Constants.WRITE) .withDspaceObject(targetItem).build(); @@ -810,22 +810,22 @@ public void putOnBitstreamInOneBundleWithNoWriteOnCurrentBundleRights() throws E .withPassword("test") .withNameInMetadata("Bundle", "Put").build(); - ResourcePolicyBuilder.createResourcePolicy(context).withUser(putBundlePerson) + ResourcePolicyBuilder.createResourcePolicy(context, putBundlePerson, null) .withAction(Constants.REMOVE) .withDspaceObject(bundle1).build(); - ResourcePolicyBuilder.createResourcePolicy(context).withUser(putBundlePerson) + ResourcePolicyBuilder.createResourcePolicy(context, putBundlePerson, null) .withAction(Constants.WRITE) .withDspaceObject(targetBundle).build(); - ResourcePolicyBuilder.createResourcePolicy(context).withUser(putBundlePerson) + ResourcePolicyBuilder.createResourcePolicy(context, putBundlePerson, null) .withAction(Constants.ADD) .withDspaceObject(targetBundle).build(); - ResourcePolicyBuilder.createResourcePolicy(context).withUser(putBundlePerson) + ResourcePolicyBuilder.createResourcePolicy(context, putBundlePerson, null) .withAction(Constants.WRITE) .withDspaceObject(bitstream).build(); - ResourcePolicyBuilder.createResourcePolicy(context).withUser(putBundlePerson) + ResourcePolicyBuilder.createResourcePolicy(context, putBundlePerson, null) .withAction(Constants.WRITE) .withDspaceObject(publicItem1).build(); - ResourcePolicyBuilder.createResourcePolicy(context).withUser(putBundlePerson) + ResourcePolicyBuilder.createResourcePolicy(context, putBundlePerson, null) .withAction(Constants.WRITE) .withDspaceObject(targetItem).build(); @@ -913,22 +913,22 @@ public void putOnBitstreamInOneBundleWithNoWriteRightsOnTargetBundle() throws Ex .withPassword("test") .withNameInMetadata("Bundle", "Put").build(); - ResourcePolicyBuilder.createResourcePolicy(context).withUser(putBundlePerson) + ResourcePolicyBuilder.createResourcePolicy(context, putBundlePerson, null) .withAction(Constants.REMOVE) .withDspaceObject(bundle1).build(); - ResourcePolicyBuilder.createResourcePolicy(context).withUser(putBundlePerson) + ResourcePolicyBuilder.createResourcePolicy(context, putBundlePerson, null) .withAction(Constants.WRITE) .withDspaceObject(bundle1).build(); - ResourcePolicyBuilder.createResourcePolicy(context).withUser(putBundlePerson) + ResourcePolicyBuilder.createResourcePolicy(context, putBundlePerson, null) .withAction(Constants.ADD) .withDspaceObject(targetBundle).build(); - ResourcePolicyBuilder.createResourcePolicy(context).withUser(putBundlePerson) + ResourcePolicyBuilder.createResourcePolicy(context, putBundlePerson, null) .withAction(Constants.WRITE) .withDspaceObject(bitstream).build(); - ResourcePolicyBuilder.createResourcePolicy(context).withUser(putBundlePerson) + ResourcePolicyBuilder.createResourcePolicy(context, putBundlePerson, null) .withAction(Constants.WRITE) .withDspaceObject(publicItem1).build(); - ResourcePolicyBuilder.createResourcePolicy(context).withUser(putBundlePerson) + ResourcePolicyBuilder.createResourcePolicy(context, putBundlePerson, null) .withAction(Constants.WRITE) .withDspaceObject(targetItem).build(); @@ -1015,22 +1015,22 @@ public void putOnBitstreamInOneBundleWithNoAddRightsOnTargetBundle() throws Exce .withPassword("test") .withNameInMetadata("Bundle", "Put").build(); - ResourcePolicyBuilder.createResourcePolicy(context).withUser(putBundlePerson) + ResourcePolicyBuilder.createResourcePolicy(context, putBundlePerson, null) .withAction(Constants.REMOVE) .withDspaceObject(bundle1).build(); - ResourcePolicyBuilder.createResourcePolicy(context).withUser(putBundlePerson) + ResourcePolicyBuilder.createResourcePolicy(context, putBundlePerson, null) .withAction(Constants.WRITE) .withDspaceObject(bundle1).build(); - ResourcePolicyBuilder.createResourcePolicy(context).withUser(putBundlePerson) + ResourcePolicyBuilder.createResourcePolicy(context, putBundlePerson, null) .withAction(Constants.WRITE) .withDspaceObject(targetBundle).build(); - ResourcePolicyBuilder.createResourcePolicy(context).withUser(putBundlePerson) + ResourcePolicyBuilder.createResourcePolicy(context, putBundlePerson, null) .withAction(Constants.WRITE) .withDspaceObject(bitstream).build(); - ResourcePolicyBuilder.createResourcePolicy(context).withUser(putBundlePerson) + ResourcePolicyBuilder.createResourcePolicy(context, putBundlePerson, null) .withAction(Constants.WRITE) .withDspaceObject(publicItem1).build(); - ResourcePolicyBuilder.createResourcePolicy(context).withUser(putBundlePerson) + ResourcePolicyBuilder.createResourcePolicy(context, putBundlePerson, null) .withAction(Constants.WRITE) .withDspaceObject(targetItem).build(); @@ -1117,22 +1117,22 @@ public void putOnBitstreamInOneBundleWithNoWriteRightsOnBitstream() throws Excep .withPassword("test") .withNameInMetadata("Bundle", "Put").build(); - ResourcePolicyBuilder.createResourcePolicy(context).withUser(putBundlePerson) + ResourcePolicyBuilder.createResourcePolicy(context, putBundlePerson, null) .withAction(Constants.REMOVE) .withDspaceObject(bundle1).build(); - ResourcePolicyBuilder.createResourcePolicy(context).withUser(putBundlePerson) + ResourcePolicyBuilder.createResourcePolicy(context, putBundlePerson, null) .withAction(Constants.WRITE) .withDspaceObject(bundle1).build(); - ResourcePolicyBuilder.createResourcePolicy(context).withUser(putBundlePerson) + ResourcePolicyBuilder.createResourcePolicy(context, putBundlePerson, null) .withAction(Constants.WRITE) .withDspaceObject(targetBundle).build(); - ResourcePolicyBuilder.createResourcePolicy(context).withUser(putBundlePerson) + ResourcePolicyBuilder.createResourcePolicy(context, putBundlePerson, null) .withAction(Constants.ADD) .withDspaceObject(targetBundle).build(); - ResourcePolicyBuilder.createResourcePolicy(context).withUser(putBundlePerson) + ResourcePolicyBuilder.createResourcePolicy(context, putBundlePerson, null) .withAction(Constants.WRITE) .withDspaceObject(publicItem1).build(); - ResourcePolicyBuilder.createResourcePolicy(context).withUser(putBundlePerson) + ResourcePolicyBuilder.createResourcePolicy(context, putBundlePerson, null) .withAction(Constants.WRITE) .withDspaceObject(targetItem).build(); @@ -1220,22 +1220,22 @@ public void putOnBitstreamInOneBundleWithNoWriteRightsOnCurrentItem() throws Exc .withPassword("test") .withNameInMetadata("Bundle", "Put").build(); - ResourcePolicyBuilder.createResourcePolicy(context).withUser(putBundlePerson) + ResourcePolicyBuilder.createResourcePolicy(context, putBundlePerson, null) .withAction(Constants.REMOVE) .withDspaceObject(bundle1).build(); - ResourcePolicyBuilder.createResourcePolicy(context).withUser(putBundlePerson) + ResourcePolicyBuilder.createResourcePolicy(context, putBundlePerson, null) .withAction(Constants.WRITE) .withDspaceObject(bundle1).build(); - ResourcePolicyBuilder.createResourcePolicy(context).withUser(putBundlePerson) + ResourcePolicyBuilder.createResourcePolicy(context, putBundlePerson, null) .withAction(Constants.WRITE) .withDspaceObject(targetBundle).build(); - ResourcePolicyBuilder.createResourcePolicy(context).withUser(putBundlePerson) + ResourcePolicyBuilder.createResourcePolicy(context, putBundlePerson, null) .withAction(Constants.ADD) .withDspaceObject(targetBundle).build(); - ResourcePolicyBuilder.createResourcePolicy(context).withUser(putBundlePerson) + ResourcePolicyBuilder.createResourcePolicy(context, putBundlePerson, null) .withAction(Constants.WRITE) .withDspaceObject(bitstream).build(); - ResourcePolicyBuilder.createResourcePolicy(context).withUser(putBundlePerson) + ResourcePolicyBuilder.createResourcePolicy(context, putBundlePerson, null) .withAction(Constants.WRITE) .withDspaceObject(targetItem).build(); @@ -1322,22 +1322,22 @@ public void putOnBitstreamInOneBundleWithNoWriteRightsOnTargetItem() throws Exce .withPassword("test") .withNameInMetadata("Bundle", "Put").build(); - ResourcePolicyBuilder.createResourcePolicy(context).withUser(putBundlePerson) + ResourcePolicyBuilder.createResourcePolicy(context, putBundlePerson, null) .withAction(Constants.REMOVE) .withDspaceObject(bundle1).build(); - ResourcePolicyBuilder.createResourcePolicy(context).withUser(putBundlePerson) + ResourcePolicyBuilder.createResourcePolicy(context, putBundlePerson, null) .withAction(Constants.WRITE) .withDspaceObject(bundle1).build(); - ResourcePolicyBuilder.createResourcePolicy(context).withUser(putBundlePerson) + ResourcePolicyBuilder.createResourcePolicy(context, putBundlePerson, null) .withAction(Constants.WRITE) .withDspaceObject(targetBundle).build(); - ResourcePolicyBuilder.createResourcePolicy(context).withUser(putBundlePerson) + ResourcePolicyBuilder.createResourcePolicy(context, putBundlePerson, null) .withAction(Constants.ADD) .withDspaceObject(targetBundle).build(); - ResourcePolicyBuilder.createResourcePolicy(context).withUser(putBundlePerson) + ResourcePolicyBuilder.createResourcePolicy(context, putBundlePerson, null) .withAction(Constants.WRITE) .withDspaceObject(bitstream).build(); - ResourcePolicyBuilder.createResourcePolicy(context).withUser(putBundlePerson) + ResourcePolicyBuilder.createResourcePolicy(context, putBundlePerson, null) .withAction(Constants.WRITE) .withDspaceObject(publicItem1).build(); diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/BitstreamFormatRestRepositoryIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/BitstreamFormatRestRepositoryIT.java index fd128269308d..d28202af659b 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/BitstreamFormatRestRepositoryIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/BitstreamFormatRestRepositoryIT.java @@ -56,7 +56,7 @@ public class BitstreamFormatRestRepositoryIT extends AbstractControllerIntegrati @Autowired private BitstreamFormatConverter bitstreamFormatConverter; - private final int DEFAULT_AMOUNT_FORMATS = 85; + private final int DEFAULT_AMOUNT_FORMATS = 86; @Test public void findAllPaginationTest() throws Exception { diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/BitstreamRestControllerIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/BitstreamRestControllerIT.java index 4dde26837cec..caa77eef00e3 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/BitstreamRestControllerIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/BitstreamRestControllerIT.java @@ -7,8 +7,8 @@ */ package org.dspace.app.rest; +import static jakarta.mail.internet.MimeUtility.encodeText; import static java.util.UUID.randomUUID; -import static javax.mail.internet.MimeUtility.encodeText; import static org.apache.commons.codec.CharEncoding.UTF_8; import static org.apache.commons.collections.CollectionUtils.isEmpty; import static org.apache.commons.io.IOUtils.toInputStream; @@ -1118,8 +1118,7 @@ public void updateBitstreamFormatEPerson() throws Exception { context.turnOffAuthorisationSystem(); - createResourcePolicy(context) - .withUser(eperson) + createResourcePolicy(context, eperson, null) .withAction(WRITE) .withDspaceObject(bitstream) .build(); @@ -1355,7 +1354,6 @@ public void testEmbargoedBitstreamWithCrisSecurity() throws Exception { checkNumberOfStatsRecords(bitstream, 2); } - @Test public void checkContentDispositionOfFormats() throws Exception { configurationService.setProperty("webui.content_disposition_format", new String[] { @@ -1372,7 +1370,7 @@ public void checkContentDispositionOfFormats() throws Exception { Bitstream rtf; Bitstream xml; Bitstream txt; - Bitstream html; + Bitstream csv; try (InputStream is = IOUtils.toInputStream(content, CharEncoding.UTF_8)) { rtf = BitstreamBuilder.createBitstream(context, item, is) .withMimeType("text/richtext").build(); @@ -1380,8 +1378,8 @@ public void checkContentDispositionOfFormats() throws Exception { .withMimeType("text/xml").build(); txt = BitstreamBuilder.createBitstream(context, item, is) .withMimeType("text/plain").build(); - html = BitstreamBuilder.createBitstream(context, item, is) - .withMimeType("text/html").build(); + csv = BitstreamBuilder.createBitstream(context, item, is) + .withMimeType("text/csv").build(); } context.restoreAuthSystemState(); @@ -1390,9 +1388,89 @@ public void checkContentDispositionOfFormats() throws Exception { verifyBitstreamDownload(xml, "text/xml;charset=UTF-8", true); verifyBitstreamDownload(txt, "text/plain;charset=UTF-8", true); // this format is not configured and should open inline - verifyBitstreamDownload(html, "text/html;charset=UTF-8", false); + verifyBitstreamDownload(csv, "text/csv;charset=UTF-8", false); + } + + @Test + public void checkHardcodedContentDispositionFormats() throws Exception { + // This test is similar to the above test, but it verifies that our *hardcoded settings* for + // webui.content_disposition_format are protecting us from loading specific formats *inline*. + context.turnOffAuthorisationSystem(); + Community community = CommunityBuilder.createCommunity(context).build(); + Collection collection = CollectionBuilder.createCollection(context, community).build(); + Item item = ItemBuilder.createItem(context, collection).build(); + String content = "Test Content"; + Bitstream html; + Bitstream js; + Bitstream rdf; + Bitstream xml; + Bitstream unknown; + Bitstream svg; + try (InputStream is = IOUtils.toInputStream(content, CharEncoding.UTF_8)) { + html = BitstreamBuilder.createBitstream(context, item, is) + .withMimeType("text/html").build(); + js = BitstreamBuilder.createBitstream(context, item, is) + .withMimeType("text/javascript").build(); + // NOTE: RDF has a MIME Type with a "charset" in our bitstream-formats.xml + rdf = BitstreamBuilder.createBitstream(context, item, is) + .withMimeType("application/rdf+xml; charset=utf-8").build(); + xml = BitstreamBuilder.createBitstream(context, item, is) + .withMimeType("text/xml").build(); + unknown = BitstreamBuilder.createBitstream(context, item, is) + .withMimeType("application/octet-stream").build(); + svg = BitstreamBuilder.createBitstream(context, item, is) + .withMimeType("image/svg+xml").build(); + + } + context.restoreAuthSystemState(); + + // By default, HTML, JS & XML should all download. This protects us from possible XSS attacks, as + // each of these formats can embed JavaScript which may execute when the file is loaded *inline*. + verifyBitstreamDownload(html, "text/html;charset=UTF-8", true); + verifyBitstreamDownload(js, "text/javascript;charset=UTF-8", true); + verifyBitstreamDownload(rdf, "application/rdf+xml;charset=UTF-8", true); + verifyBitstreamDownload(xml, "text/xml;charset=UTF-8", true); + // Unknown file formats should also always download + verifyBitstreamDownload(unknown, "application/octet-stream;charset=UTF-8", true); + // SVG does NOT currently exist as a recognized format in DSpace's bitstream-formats.xml, but it's another + // format that allows embedded JavaScript. This test is a reminder that SVGs should NOT be opened inline. + verifyBitstreamDownload(svg, "application/octet-stream;charset=UTF-8", true); } + @Test + public void checkWildcardContentDispositionFormats() throws Exception { + // Setting "*" should result in all formats being downloaded (nothing will be opened inline) + configurationService.setProperty("webui.content_disposition_format", "*"); + + context.turnOffAuthorisationSystem(); + Community community = CommunityBuilder.createCommunity(context).build(); + Collection collection = CollectionBuilder.createCollection(context, community).build(); + Item item = ItemBuilder.createItem(context, collection).build(); + String content = "Test Content"; + Bitstream csv; + Bitstream jpg; + Bitstream mpg; + Bitstream pdf; + try (InputStream is = IOUtils.toInputStream(content, CharEncoding.UTF_8)) { + csv = BitstreamBuilder.createBitstream(context, item, is) + .withMimeType("text/csv").build(); + jpg = BitstreamBuilder.createBitstream(context, item, is) + .withMimeType("image/jpeg").build(); + mpg = BitstreamBuilder.createBitstream(context, item, is) + .withMimeType("video/mpeg").build(); + pdf = BitstreamBuilder.createBitstream(context, item, is) + .withMimeType("application/pdf").build(); + } + context.restoreAuthSystemState(); + + // All formats should be download only + verifyBitstreamDownload(csv, "text/csv;charset=UTF-8", true); + verifyBitstreamDownload(jpg, "image/jpeg;charset=UTF-8", true); + verifyBitstreamDownload(mpg, "video/mpeg;charset=UTF-8", true); + verifyBitstreamDownload(pdf, "application/pdf;charset=UTF-8", true); + } + + private void verifyBitstreamDownload(Bitstream file, String contentType, boolean shouldDownload) throws Exception { String token = getAuthToken(admin.getEmail(), password); String header = getClient(token).perform(get("/api/core/bitstreams/" + file.getID() + "/content") @@ -1401,11 +1479,15 @@ private void verifyBitstreamDownload(Bitstream file, String contentType, boolean .andExpect(content().contentType(contentType)) .andReturn().getResponse().getHeader("content-disposition"); if (shouldDownload) { - assertTrue(header.contains("attachment")); - assertFalse(header.contains("inline")); + assertTrue("Content-Disposition should contain 'attachment' for " + contentType, + header.contains("attachment")); + assertFalse("Content-Disposition should NOT contain 'inline' for " + contentType, + header.contains("inline")); } else { - assertTrue(header.contains("inline")); - assertFalse(header.contains("attachment")); + assertTrue("Content-Disposition should contain 'inline' for " + contentType, + header.contains("inline")); + assertFalse("Content-Disposition should NOT contain 'attachment' for " + contentType, + header.contains("attachment")); } } } diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/BitstreamRestRepositoryIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/BitstreamRestRepositoryIT.java index d12aa6b20095..19e72bcea93c 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/BitstreamRestRepositoryIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/BitstreamRestRepositoryIT.java @@ -7,8 +7,8 @@ */ package org.dspace.app.rest; -import static javax.servlet.http.HttpServletResponse.SC_NOT_FOUND; -import static javax.servlet.http.HttpServletResponse.SC_OK; +import static jakarta.servlet.http.HttpServletResponse.SC_NOT_FOUND; +import static jakarta.servlet.http.HttpServletResponse.SC_OK; import static org.apache.commons.codec.CharEncoding.UTF_8; import static org.apache.commons.io.IOUtils.toInputStream; import static org.dspace.app.rest.matcher.MetadataMatcher.matchMetadata; @@ -36,8 +36,8 @@ import java.util.Comparator; import java.util.List; import java.util.UUID; -import javax.ws.rs.core.MediaType; +import jakarta.ws.rs.core.MediaType; import org.apache.commons.codec.CharEncoding; import org.apache.commons.io.IOUtils; import org.dspace.app.rest.matcher.BitstreamFormatMatcher; @@ -712,7 +712,7 @@ public void findOneBitstreamTest_EmbargoedBitstream_ePersonREADRightsOnBundle() // Replace anon read policy on bundle of bitstream with ePerson READ policy resourcePolicyService.removePolicies(context, bitstream.getBundles().get(0), Constants.READ); - ResourcePolicyBuilder.createResourcePolicy(context).withUser(eperson) + ResourcePolicyBuilder.createResourcePolicy(context, eperson, null) .withAction(Constants.READ) .withDspaceObject(bitstream.getBundles().get(0)).build(); @@ -775,9 +775,9 @@ public void findOneBitstreamFormatTest_EmbargoedBitstream_ePersonREADRightsOnBun // Replace anon read policy on bundle of bitstream with ePerson READ policy resourcePolicyService.removePolicies(context, bitstream.getBundles().get(0), Constants.READ); - ResourcePolicyBuilder.createResourcePolicy(context).withUser(eperson) - .withAction(Constants.READ) - .withDspaceObject(bitstream.getBundles().get(0)).build(); + ResourcePolicyBuilder.createResourcePolicy(context, eperson, null) + .withAction(Constants.READ) + .withDspaceObject(bitstream.getBundles().get(0)).build(); context.restoreAuthSystemState(); @@ -900,7 +900,7 @@ public void findOneBitstreamTest_EmbargoedBitstream_ePersonREADRightsOnItem() th // Replace anon read policy on item of bitstream with ePerson READ policy resourcePolicyService.removePolicies(context, publicItem1, Constants.READ); - ResourcePolicyBuilder.createResourcePolicy(context).withUser(eperson) + ResourcePolicyBuilder.createResourcePolicy(context, eperson, null) .withAction(Constants.READ) .withDspaceObject(publicItem1).build(); @@ -1339,7 +1339,7 @@ public void patchReplaceMultipleDescriptionBitstream() throws Exception { bitstream = BitstreamBuilder. createBitstream(context, publicItem1, is) .withName("Bitstream") - //.withMimeType("text/plain") + .withMimeType("text/plain") .build(); } @@ -1375,7 +1375,7 @@ public void patchReplaceMultipleDescriptionBitstream() throws Exception { getClient(token) .perform(patch("/api/core/bitstreams/" + bitstream.getID()) .content(requestBody) - .contentType(javax.ws.rs.core.MediaType.APPLICATION_JSON_PATCH_JSON)) + .contentType(jakarta.ws.rs.core.MediaType.APPLICATION_JSON_PATCH_JSON)) .andExpect(status().isOk()) .andExpect( jsonPath("$.metadata", @@ -1548,8 +1548,7 @@ public void testHiddenMetadataForUserWithWriteRights() throws Exception { .build(); } - ResourcePolicyBuilder.createResourcePolicy(context) - .withUser(eperson) + ResourcePolicyBuilder.createResourcePolicy(context, eperson, null) .withAction(WRITE) .withDspaceObject(col1) .build(); @@ -3113,14 +3112,14 @@ public void deleteBitstreamsInBulk_invalidUUID() throws Exception { Assert.assertTrue(bitstreamExists(token, bitstream1, bitstream2, bitstream3, bitstream4)); MvcResult result = getClient(token).perform(patch("/api/core/bitstreams") - .content(patchBody) - .contentType(MediaType.APPLICATION_JSON_PATCH_JSON)) - .andExpect(status().isUnprocessableEntity()) - .andReturn(); + .content(patchBody) + .contentType(MediaType.APPLICATION_JSON_PATCH_JSON)) + .andExpect(status().isUnprocessableEntity()) + .andReturn(); // Verify our custom error message is returned when an invalid UUID is used assertEquals("Bitstream with uuid " + randomUUID + " could not be found in the repository", - result.getResponse().getErrorMessage()); + result.getResponse().getErrorMessage()); // Verify that no bitstreams were deleted since the request was invalid Assert.assertTrue(bitstreamExists(token, bitstream1, bitstream2, bitstream3, bitstream4)); @@ -3246,9 +3245,9 @@ public void deleteBitstreamsInBulk_Unauthorized() throws Exception { Assert.assertTrue(bitstreamExists(token, bitstream1, bitstream2, bitstream3, bitstream4)); getClient().perform(patch("/api/core/bitstreams") - .content(patchBody) - .contentType(MediaType.APPLICATION_JSON_PATCH_JSON)) - .andExpect(status().isUnauthorized()); + .content(patchBody) + .contentType(MediaType.APPLICATION_JSON_PATCH_JSON)) + .andExpect(status().isUnauthorized()); } @Test @@ -3299,9 +3298,9 @@ public void deleteBitstreamsInBulk_Forbidden() throws Exception { String token = getAuthToken(eperson.getEmail(), password); getClient(token).perform(patch("/api/core/bitstreams") - .content(patchBody) - .contentType(MediaType.APPLICATION_JSON_PATCH_JSON)) - .andExpect(status().isForbidden()); + .content(patchBody) + .contentType(MediaType.APPLICATION_JSON_PATCH_JSON)) + .andExpect(status().isForbidden()); } @Test @@ -3311,15 +3310,15 @@ public void deleteBitstreamsInBulk_collectionAdmin() throws Exception { .withName("Parent Community") .build(); Collection col1 = CollectionBuilder.createCollection(context, parentCommunity) - .withName("Collection 1") - .build(); + .withName("Collection 1") + .build(); Collection col2 = CollectionBuilder.createCollection(context, parentCommunity) .withName("Collection 2") .build(); EPerson col1Admin = EPersonBuilder.createEPerson(context) - .withEmail("col1admin@test.com") - .withPassword(password) - .build(); + .withEmail("col1admin@test.com") + .withPassword(password) + .build(); EPerson col2Admin = EPersonBuilder.createEPerson(context) .withEmail("col2admin@test.com") .withPassword(password) @@ -3425,9 +3424,9 @@ public void deleteBitstreamsInBulk_communityAdmin() throws Exception { .withName("Collection 2") .build(); EPerson parentCommunityAdmin = EPersonBuilder.createEPerson(context) - .withEmail("parentComAdmin@test.com") - .withPassword(password) - .build(); + .withEmail("parentComAdmin@test.com") + .withPassword(password) + .build(); Group parentComAdminGroup = communityService.createAdministrators(context, parentCommunity); groupService.addMember(context, parentComAdminGroup, parentCommunityAdmin); Item publicItem1 = ItemBuilder.createItem(context, col1) @@ -3594,5 +3593,4 @@ public boolean bitstreamNotFound(String token, Bitstream ...bitstreams) throws E return true; } - } diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/BundleRestRepositoryIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/BundleRestRepositoryIT.java index 259580f8c081..628e090a1b67 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/BundleRestRepositoryIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/BundleRestRepositoryIT.java @@ -22,9 +22,9 @@ import java.util.List; import java.util.Map; import java.util.UUID; -import javax.ws.rs.core.MediaType; import com.fasterxml.jackson.databind.ObjectMapper; +import jakarta.ws.rs.core.MediaType; import org.apache.commons.codec.CharEncoding; import org.apache.commons.io.IOUtils; import org.dspace.app.rest.matcher.BitstreamMatcher; @@ -347,7 +347,7 @@ public void createBundleWithSufficientPermissions() throws Exception { .withPassword("test") .withNameInMetadata("Create", "Bundle").build(); - ResourcePolicy rp1 = ResourcePolicyBuilder.createResourcePolicy(context).withUser(createBundleEperson) + ResourcePolicy rp1 = ResourcePolicyBuilder.createResourcePolicy(context, createBundleEperson, null) .withAction(Constants.ADD) .withDspaceObject(item).build(); context.restoreAuthSystemState(); @@ -567,7 +567,7 @@ public void patchReplaceMultipleDescriptionBundle() throws Exception { getClient(token) .perform(patch("/api/core/bundles/" + bundle1.getID()) .content(requestBody) - .contentType(javax.ws.rs.core.MediaType.APPLICATION_JSON_PATCH_JSON)) + .contentType(jakarta.ws.rs.core.MediaType.APPLICATION_JSON_PATCH_JSON)) .andExpect(status().isOk()) .andExpect( jsonPath("$.metadata", diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/CCLicenseAddPatchOperationIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/CCLicenseAddPatchOperationIT.java index f07c816b9c98..0aaf4568086d 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/CCLicenseAddPatchOperationIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/CCLicenseAddPatchOperationIT.java @@ -18,8 +18,8 @@ import java.util.ArrayList; import java.util.List; -import javax.ws.rs.core.MediaType; +import jakarta.ws.rs.core.MediaType; import org.dspace.app.rest.model.patch.AddOperation; import org.dspace.app.rest.model.patch.Operation; import org.dspace.app.rest.test.AbstractControllerIntegrationTest; @@ -63,7 +63,7 @@ public void patchSubmissionCCLicense() throws Exception { List ops = new ArrayList<>(); AddOperation addOperation = new AddOperation("/sections/cclicense/uri", - "http://creativecommons.org/licenses/by-nc-sa/4.0/"); + "https://creativecommons.org/licenses/by-nc-sa/4.0/"); ops.add(addOperation); String patchBody = getPatchContent(ops); @@ -74,7 +74,7 @@ public void patchSubmissionCCLicense() throws Exception { .contentType(MediaType.APPLICATION_JSON_PATCH_JSON)) .andExpect(status().isOk()) .andExpect(jsonPath("$.sections.cclicense", allOf( - hasJsonPath("$.uri", is("http://creativecommons.org/licenses/by-nc-sa/4.0/")), + hasJsonPath("$.uri", is("https://creativecommons.org/licenses/by-nc-sa/4.0/")), hasJsonPath("$.rights", is("Attribution-NonCommercial-ShareAlike 4.0 International")), hasJsonPath("$.file.name", is("license_rdf")) diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/CCLicenseRemovePatchOperationIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/CCLicenseRemovePatchOperationIT.java index 8e01678899a5..78ad735d3f1b 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/CCLicenseRemovePatchOperationIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/CCLicenseRemovePatchOperationIT.java @@ -17,8 +17,8 @@ import java.util.ArrayList; import java.util.List; -import javax.ws.rs.core.MediaType; +import jakarta.ws.rs.core.MediaType; import org.dspace.app.rest.model.patch.AddOperation; import org.dspace.app.rest.model.patch.Operation; import org.dspace.app.rest.model.patch.RemoveOperation; @@ -64,7 +64,7 @@ public void patchRemoveSubmissionCCLicense() throws Exception { // First add a license and verify it is added List ops = new ArrayList<>(); AddOperation addOperation = new AddOperation("/sections/cclicense/uri", - "http://creativecommons.org/licenses/by-nc-sa/4.0/"); + "https://creativecommons.org/licenses/by-nc-sa/4.0/"); ops.add(addOperation); String patchBody = getPatchContent(ops); @@ -75,7 +75,7 @@ public void patchRemoveSubmissionCCLicense() throws Exception { .contentType(MediaType.APPLICATION_JSON_PATCH_JSON)) .andExpect(status().isOk()) .andExpect(jsonPath("$.sections.cclicense", allOf( - hasJsonPath("$.uri", is("http://creativecommons.org/licenses/by-nc-sa/4.0/")), + hasJsonPath("$.uri", is("https://creativecommons.org/licenses/by-nc-sa/4.0/")), hasJsonPath("$.rights", is("Attribution-NonCommercial-ShareAlike 4.0 International")), hasJsonPath("$.file.name", is("license_rdf")) diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/CollectionRestRepositoryIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/CollectionRestRepositoryIT.java index 1595fb1069ce..b3b96925e0f1 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/CollectionRestRepositoryIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/CollectionRestRepositoryIT.java @@ -2020,8 +2020,7 @@ public void testHiddenMetadataForUserWithWriteRights() throws Exception { - ResourcePolicyBuilder.createResourcePolicy(context) - .withUser(eperson) + ResourcePolicyBuilder.createResourcePolicy(context, eperson, null) .withAction(WRITE) .withDspaceObject(col1) .build(); @@ -3242,11 +3241,10 @@ public void testSubGroupOfCommunityAdminGroupAuthorizedSearch() throws Exception communityC = CommunityBuilder.createCommunity(context) .withName("the last community is topLevelCommunityC") .build(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, null, groupService.findByName(context, "COMMUNITY_" + + topLevelCommunityA.getID() + "_ADMIN")) .withDspaceObject(communityB) - .withAction(Constants.ADMIN) - .withGroup(groupService.findByName(context, "COMMUNITY_" + topLevelCommunityA.getID() + "_ADMIN")) - .build(); + .withAction(Constants.ADMIN).build(); collectionB = CollectionBuilder.createCollection(context, subCommunityA) .withName("collectionB is a very original name") .build(); @@ -3298,11 +3296,10 @@ public void testSubGroupOfSubCommunityAdminGroupAuthorizedSearch() throws Except .withName("the last community is topLevelCommunityC") .addParentCommunity(context, topLevelCommunityA) .build(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, null, groupService.findByName(context, "COMMUNITY_" + + subCommunityA.getID() + "_ADMIN")) .withDspaceObject(communityB) - .withAction(Constants.ADMIN) - .withGroup(groupService.findByName(context, "COMMUNITY_" + subCommunityA.getID() + "_ADMIN")) - .build(); + .withAction(Constants.ADMIN).build(); collectionB = CollectionBuilder.createCollection(context, subCommunityA) .withName("collectionB is a very original name") .build(); @@ -3360,11 +3357,10 @@ public void testSubGroupOfCollectionAdminGroupAuthorizedSearch() throws Exceptio collectionC = CollectionBuilder.createCollection(context, communityC) .withName("the last collection is collectionC") .build(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, null, groupService.findByName(context, "COLLECTION_" + + collectionA.getID() + "_ADMIN")) .withDspaceObject(collectionB) - .withAction(Constants.ADMIN) - .withGroup(groupService.findByName(context, "COLLECTION_" + collectionA.getID() + "_ADMIN")) - .build(); + .withAction(Constants.ADMIN).build(); context.restoreAuthSystemState(); String token = getAuthToken(eperson.getEmail(), password); @@ -3413,11 +3409,10 @@ public void testSubGroupOfSubmitterGroupAuthorizedSearch() throws Exception { collectionB = CollectionBuilder.createCollection(context, communityB) .withName("collectionB is a very original name") .build(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, null, groupService.findByName(context, "COLLECTION_" + + collectionA.getID() + "_SUBMIT")) .withDspaceObject(collectionB) - .withAction(Constants.ADD) - .withGroup(groupService.findByName(context, "COLLECTION_" + collectionA.getID() + "_SUBMIT")) - .build(); + .withAction(Constants.ADD).build(); collectionC = CollectionBuilder.createCollection(context, communityC) .withName("the last collection is collectionC") .build(); @@ -3500,7 +3495,7 @@ public void patchReplaceMultipleDescriptionCollection() throws Exception { getClient(token) .perform(patch("/api/core/collections/" + col.getID()) .content(requestBody) - .contentType(javax.ws.rs.core.MediaType.APPLICATION_JSON_PATCH_JSON)) + .contentType(jakarta.ws.rs.core.MediaType.APPLICATION_JSON_PATCH_JSON)) .andExpect(status().isOk()) .andExpect( jsonPath("$.metadata", @@ -3558,7 +3553,7 @@ public void patchMetadataCheckReindexingTest() throws Exception { String patchBody = getPatchContent(updateTitle); getClient(adminToken).perform(patch("/api/core/collections/" + col.getID()) .content(patchBody) - .contentType(javax.ws.rs.core.MediaType.APPLICATION_JSON_PATCH_JSON)) + .contentType(jakarta.ws.rs.core.MediaType.APPLICATION_JSON_PATCH_JSON)) .andExpect(status().isOk()) .andExpect(jsonPath("$.metadata['dc.title'][0].value", is("New Name"))); diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/CommunityRestRepositoryIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/CommunityRestRepositoryIT.java index 910dee3bec74..60b6d39a0705 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/CommunityRestRepositoryIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/CommunityRestRepositoryIT.java @@ -1993,7 +1993,7 @@ public void patchReplaceMultipleDescriptionCommunity() throws Exception { getClient(token) .perform(patch("/api/core/communities/" + parentCommunity.getID()) .content(requestBody) - .contentType(javax.ws.rs.core.MediaType.APPLICATION_JSON_PATCH_JSON)) + .contentType(jakarta.ws.rs.core.MediaType.APPLICATION_JSON_PATCH_JSON)) .andExpect(status().isOk()) .andExpect( jsonPath("$.metadata", @@ -2376,10 +2376,10 @@ public void testSubGroupOfCommunityAdminGroupAuthorizedSearch() throws Exception communityC = CommunityBuilder.createCommunity(context) .withName("the last community is topLevelCommunityC") .build(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, null, groupService.findByName(context, "COMMUNITY_" + + topLevelCommunityA.getID() + "_ADMIN")) .withDspaceObject(communityB) .withAction(Constants.ADMIN) - .withGroup(groupService.findByName(context, "COMMUNITY_" + topLevelCommunityA.getID() + "_ADMIN")) .build(); context.restoreAuthSystemState(); @@ -2429,10 +2429,10 @@ public void testSubGroupOfSubCommunityAdminGroupAuthorizedSearch() throws Except .withName("the last community is topLevelCommunityC") .addParentCommunity(context, topLevelCommunityA) .build(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, null, groupService.findByName(context, "COMMUNITY_" + + subCommunityA.getID() + "_ADMIN")) .withDspaceObject(communityB) .withAction(Constants.ADMIN) - .withGroup(groupService.findByName(context, "COMMUNITY_" + subCommunityA.getID() + "_ADMIN")) .build(); context.restoreAuthSystemState(); @@ -2479,10 +2479,10 @@ public void testSubGroupOfCollectionAdminGroupAuthorizedSearch() throws Exceptio Collection collectionB = CollectionBuilder.createCollection(context, communityB) .withName("collectionB") .build(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, null, groupService.findByName(context, "COLLECTION_" + + collectionA.getID() + "_ADMIN")) .withDspaceObject(collectionB) .withAction(Constants.ADMIN) - .withGroup(groupService.findByName(context, "COLLECTION_" + collectionA.getID() + "_ADMIN")) .build(); communityC = CommunityBuilder.createCommunity(context) .withName("the last community is topLevelCommunityC") @@ -2527,10 +2527,10 @@ public void testSubGroupOfSubmitterGroupAuthorizedSearch() throws Exception { Collection collectionB = CollectionBuilder.createCollection(context, communityB) .withName("collectionB") .build(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, null, groupService.findByName(context, "COLLECTION_" + + collectionA.getID() + "_SUBMIT")) .withDspaceObject(collectionB) .withAction(Constants.ADD) - .withGroup(groupService.findByName(context, "COLLECTION_" + collectionA.getID() + "_SUBMIT")) .build(); communityC = CommunityBuilder.createCommunity(context) .withName("the last community is topLevelCommunityC") diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/ConfigurationRestRepositoryIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/ConfigurationRestRepositoryIT.java index 1eab1ef68eb7..45a98a203944 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/ConfigurationRestRepositoryIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/ConfigurationRestRepositoryIT.java @@ -51,5 +51,10 @@ public void getNonExposedValue() throws Exception { public void getAll() throws Exception { getClient().perform(get("/api/config/properties/")) .andExpect(status().isMethodNotAllowed()); + + // Sanity check - Verify same result with no trailing slash, as DSpace should not care whether this + // findAll endpoint ends in a slash or not. + getClient().perform(get("/api/config/properties")) + .andExpect(status().isMethodNotAllowed()); } } diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/CrossRefImportMetadataSourceServiceIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/CrossRefImportMetadataSourceServiceIT.java index 1ab5a3203c08..2e98b277f30d 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/CrossRefImportMetadataSourceServiceIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/CrossRefImportMetadataSourceServiceIT.java @@ -17,8 +17,8 @@ import java.util.Arrays; import java.util.Collection; import java.util.List; -import javax.el.MethodNotFoundException; +import jakarta.el.MethodNotFoundException; import org.apache.commons.io.IOUtils; import org.apache.http.client.methods.CloseableHttpResponse; import org.apache.http.impl.client.CloseableHttpClient; diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/CsrfRestControllerIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/CsrfRestControllerIT.java new file mode 100644 index 000000000000..1bfdc8feaff0 --- /dev/null +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/CsrfRestControllerIT.java @@ -0,0 +1,60 @@ +/** + * The contents of this file are subject to the license and copyright + * detailed in the LICENSE and NOTICE files at the root of the source + * tree and available online at + * + * http://www.dspace.org/license/ + */ +package org.dspace.app.rest; + +import static org.junit.Assert.assertNotEquals; +import static org.springframework.test.web.servlet.request.MockMvcRequestBuilders.get; +import static org.springframework.test.web.servlet.result.MockMvcResultMatchers.cookie; +import static org.springframework.test.web.servlet.result.MockMvcResultMatchers.header; +import static org.springframework.test.web.servlet.result.MockMvcResultMatchers.status; + +import org.dspace.app.rest.security.DSpaceCsrfTokenRepository; +import org.dspace.app.rest.test.AbstractControllerIntegrationTest; +import org.junit.Test; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.boot.test.autoconfigure.web.servlet.AutoConfigureMockMvc; +import org.springframework.test.web.servlet.MockMvc; + +/** + * Integration test for the /api/security/csrf endpoint + *

+ * NOTE: This test will autoconfigure the MockMvc (@AutoConfigureMockMvc) in order to avoid using + * AbstractControllerIntegrationTest.getClient() because that method may use this /api/security/csrf endpoint to + * obtain a CSRF token. + **/ +@AutoConfigureMockMvc +public class CsrfRestControllerIT extends AbstractControllerIntegrationTest { + + @Autowired + private MockMvc mockMvc; + + @Test + public void getCsrf() throws Exception { + // NOTE: We avoid using getClient() here because that method may also call this "/api/security/csrf" endpoint. + String headerToken = mockMvc.perform(get("/api/security/csrf")) + .andExpect(status().isNoContent()) + // Expect this endpoint to send back the proper HTTP Header & Cookie + // as set by DSpaceCsrfTokenRepository + .andExpect(cookie().exists(DSpaceCsrfTokenRepository.DEFAULT_CSRF_COOKIE_NAME)) + .andExpect(header().exists(DSpaceCsrfTokenRepository.DSPACE_CSRF_HEADER_NAME)) + .andReturn().getResponse() + .getHeader(DSpaceCsrfTokenRepository.DSPACE_CSRF_HEADER_NAME); + + // Call the endpoint again, and verify we get a new token again. Endpoint should ALWAYS change the CSRF token + String headerToken2 = mockMvc.perform(get("/api/security/csrf")) + .andExpect(status().isNoContent()) + // Expect this endpoint to send back the proper HTTP Header & Cookie + // as set by DSpaceCsrfTokenRepository + .andExpect(cookie().exists(DSpaceCsrfTokenRepository.DEFAULT_CSRF_COOKIE_NAME)) + .andExpect(header().exists(DSpaceCsrfTokenRepository.DSPACE_CSRF_HEADER_NAME)) + .andReturn().getResponse() + .getHeader(DSpaceCsrfTokenRepository.DSPACE_CSRF_HEADER_NAME); + + assertNotEquals("CSRF Tokens should not be the same in separate requests", headerToken, headerToken2); + } +} diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/DataCiteImportMetadataSourceServiceIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/DataCiteImportMetadataSourceServiceIT.java index 83ebc40c7966..35b4810d9292 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/DataCiteImportMetadataSourceServiceIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/DataCiteImportMetadataSourceServiceIT.java @@ -15,8 +15,8 @@ import java.util.ArrayList; import java.util.Collection; import java.util.List; -import javax.el.MethodNotFoundException; +import jakarta.el.MethodNotFoundException; import org.apache.commons.io.IOUtils; import org.apache.http.client.methods.CloseableHttpResponse; import org.apache.http.impl.client.CloseableHttpClient; @@ -146,4 +146,23 @@ private ArrayList getRecords() { return records; } + @Test + public void dataCiteImportMetadataNoResultsTest() throws Exception { + context.turnOffAuthorisationSystem(); + CloseableHttpClient originalHttpClient = liveImportClientImpl.getHttpClient(); + CloseableHttpClient httpClient = Mockito.mock(CloseableHttpClient.class); + try (InputStream dataciteResp = getClass().getResourceAsStream("dataCite-noResults.json")) { + String dataciteTextResp = IOUtils.toString(dataciteResp, Charset.defaultCharset()); + liveImportClientImpl.setHttpClient(httpClient); + CloseableHttpResponse response = mockResponse(dataciteTextResp, 200, "OK"); + when(httpClient.execute(ArgumentMatchers.any())).thenReturn(response); + context.restoreAuthSystemState(); + int tot = dataCiteServiceImpl.getRecordsCount("nocontent"); + assertEquals(0, tot); + Collection importRecords = dataCiteServiceImpl.getRecords("nocontent", 0 , -1); + assertEquals(0, importRecords.size()); + } finally { + liveImportClientImpl.setHttpClient(originalHttpClient); + } + } } diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/DiscoveryRestControllerIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/DiscoveryRestControllerIT.java index 92609ff46bc3..0c2b1fa65632 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/DiscoveryRestControllerIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/DiscoveryRestControllerIT.java @@ -1200,11 +1200,11 @@ public void checkSortOrderInPersonOrOrgunitConfigurationTest() throws Exception DiscoverySortFieldConfiguration.SORT_ORDER.desc.name()), SortOptionMatcher.sortOptionMatcher("organization.legalName", DiscoverySortFieldConfiguration.SORT_ORDER.asc.name()), - SortOptionMatcher.sortOptionMatcher("organisation.address.addressCountry", + SortOptionMatcher.sortOptionMatcher("organization.address.addressCountry", DiscoverySortFieldConfiguration.SORT_ORDER.asc.name()), - SortOptionMatcher.sortOptionMatcher("organisation.address.addressLocality", + SortOptionMatcher.sortOptionMatcher("organization.address.addressLocality", DiscoverySortFieldConfiguration.SORT_ORDER.asc.name()), - SortOptionMatcher.sortOptionMatcher("organisation.foundingDate", + SortOptionMatcher.sortOptionMatcher("organization.foundingDate", DiscoverySortFieldConfiguration.SORT_ORDER.desc.name()), SortOptionMatcher.sortOptionMatcher("dc.date.accessioned", DiscoverySortFieldConfiguration.SORT_ORDER.desc.name()), @@ -6105,10 +6105,6 @@ public void discoverSearchPoolTaskObjectsTest() throws Exception { .andExpect(jsonPath("$._embedded.searchResult._embedded.objects", Matchers.contains( SearchResultMatcher.match("workflow", "pooltask", "pooltasks") ))) - .andExpect(jsonPath("$._embedded.searchResult._embedded.objects",Matchers.contains( - allOf(hasJsonPath("$._embedded.indexableObject._embedded.workflowitem._embedded.item", - is(SearchResultMatcher.matchEmbeddedObjectOnItemName("item", "Mathematical Theory")))) - ))) .andExpect(jsonPath("$._embedded.searchResult.page.totalElements", is(1))); getClient(adminToken).perform(get("/api/discover/search/objects") @@ -6122,12 +6118,6 @@ public void discoverSearchPoolTaskObjectsTest() throws Exception { SearchResultMatcher.match("workflow", "pooltask", "pooltasks"), SearchResultMatcher.match("workflow", "pooltask", "pooltasks") ))) - .andExpect(jsonPath("$._embedded.searchResult._embedded.objects",Matchers.containsInAnyOrder( - allOf(hasJsonPath("$._embedded.indexableObject._embedded.workflowitem._embedded.item", - is(SearchResultMatcher.matchEmbeddedObjectOnItemName("item", "Metaphysics")))), - allOf(hasJsonPath("$._embedded.indexableObject._embedded.workflowitem._embedded.item", - is(SearchResultMatcher.matchEmbeddedObjectOnItemName("item", "Test Metaphysics")))) - ))) .andExpect(jsonPath("$._embedded.searchResult.page.totalElements", is(2))); } @@ -6192,14 +6182,6 @@ public void discoverSearchPoolTaskObjectsEmptyQueryTest() throws Exception { SearchResultMatcher.match("workflow", "pooltask", "pooltasks"), SearchResultMatcher.match("workflow", "pooltask", "pooltasks") ))) - .andExpect(jsonPath("$._embedded.searchResult._embedded.objects",Matchers.containsInAnyOrder( - allOf(hasJsonPath("$._embedded.indexableObject._embedded.workflowitem._embedded.item", - is(SearchResultMatcher.matchEmbeddedObjectOnItemName("item", "Mathematical Theory")))), - allOf(hasJsonPath("$._embedded.indexableObject._embedded.workflowitem._embedded.item", - is(SearchResultMatcher.matchEmbeddedObjectOnItemName("item", "Metaphysics")))), - allOf(hasJsonPath("$._embedded.indexableObject._embedded.workflowitem._embedded.item", - is(SearchResultMatcher.matchEmbeddedObjectOnItemName("item", "Test Metaphysics")))) - ))) .andExpect(jsonPath("$._embedded.searchResult.page.totalElements", is(3))); } @@ -6952,8 +6934,7 @@ public void discoverSearchObjectsNOTIFYIncomingConfigurationTest() throws Except String object = configurationService.getProperty("dspace.ui.url") + "/handle/" + item.getHandle(); NotifyServiceEntity notifyService = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name") .withDescription("service description") .withUrl("service url") .withLdnUrl("https://overlay-journal.com/inbox/") @@ -7016,8 +6997,7 @@ public void discoverSearchObjectsNOTIFYOutgoingConfigurationTest() throws Except String object = configurationService.getProperty("dspace.ui.url") + "/handle/" + item.getHandle(); NotifyServiceEntity notifyService = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name") .withDescription("service description") .withUrl("service url") .withLdnUrl("https://generic-service.com/system/inbox/") diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/DuplicateDetectionRestIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/DuplicateDetectionRestIT.java index aa0ebb520185..f53f440fd154 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/DuplicateDetectionRestIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/DuplicateDetectionRestIT.java @@ -17,8 +17,8 @@ import java.util.HashMap; import java.util.List; import java.util.Map; -import javax.ws.rs.core.MediaType; +import jakarta.ws.rs.core.MediaType; import org.dspace.app.rest.model.patch.Operation; import org.dspace.app.rest.model.patch.ReplaceOperation; import org.dspace.app.rest.test.AbstractControllerIntegrationTest; diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/EPersonRestRepositoryIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/EPersonRestRepositoryIT.java index 7222fdd71a1f..bd66beee1fbd 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/EPersonRestRepositoryIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/EPersonRestRepositoryIT.java @@ -47,9 +47,9 @@ import java.util.Map; import java.util.UUID; import java.util.concurrent.atomic.AtomicReference; -import javax.ws.rs.core.MediaType; import com.fasterxml.jackson.databind.ObjectMapper; +import jakarta.ws.rs.core.MediaType; import org.apache.commons.lang3.StringUtils; import org.dspace.app.rest.exception.EPersonNameNotProvidedException; import org.dspace.app.rest.exception.RESTEmptyWorkflowGroupException; diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/GroupRestRepositoryIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/GroupRestRepositoryIT.java index 473bdad73bfa..e33717007127 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/GroupRestRepositoryIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/GroupRestRepositoryIT.java @@ -33,9 +33,9 @@ import java.util.Locale; import java.util.UUID; import java.util.concurrent.atomic.AtomicReference; -import javax.ws.rs.core.MediaType; import com.fasterxml.jackson.databind.ObjectMapper; +import jakarta.ws.rs.core.MediaType; import org.dspace.app.rest.exception.GroupNameNotProvidedException; import org.dspace.app.rest.matcher.EPersonMatcher; import org.dspace.app.rest.matcher.GroupMatcher; @@ -3460,10 +3460,10 @@ public void commAdminAndColAdminCannotExploitItemReadGroupTest() throws Exceptio .build(); Group adminGroup = groupService.findByName(context, Group.ADMIN); - ResourcePolicyBuilder.createResourcePolicy(context).withAction(Constants.DEFAULT_ITEM_READ) - .withGroup(adminGroup).withDspaceObject(child1).build(); - ResourcePolicyBuilder.createResourcePolicy(context).withAction(Constants.DEFAULT_ITEM_READ) - .withGroup(adminGroup).withDspaceObject(col1).build(); + ResourcePolicyBuilder.createResourcePolicy(context, null, adminGroup).withAction(Constants.DEFAULT_ITEM_READ) + .withDspaceObject(child1).build(); + ResourcePolicyBuilder.createResourcePolicy(context, null, adminGroup).withAction(Constants.DEFAULT_ITEM_READ) + .withDspaceObject(col1).build(); context.restoreAuthSystemState(); String tokenAdminComm = getAuthToken(adminChild1.getEmail(), password); @@ -3523,10 +3523,12 @@ public void commAdminAndColAdminCannotExpoloitBitstreamReadGroupTest() throws Ex .build(); Group adminGroup = groupService.findByName(context, Group.ADMIN); - ResourcePolicyBuilder.createResourcePolicy(context).withAction(Constants.DEFAULT_BITSTREAM_READ) - .withGroup(adminGroup).withDspaceObject(child1).build(); - ResourcePolicyBuilder.createResourcePolicy(context).withAction(Constants.DEFAULT_BITSTREAM_READ) - .withGroup(adminGroup).withDspaceObject(col1).build(); + ResourcePolicyBuilder.createResourcePolicy(context, null, adminGroup) + .withAction(Constants.DEFAULT_BITSTREAM_READ) + .withDspaceObject(child1).build(); + ResourcePolicyBuilder.createResourcePolicy(context, null, adminGroup) + .withAction(Constants.DEFAULT_BITSTREAM_READ) + .withDspaceObject(col1).build(); context.restoreAuthSystemState(); String tokenAdminComm = getAuthToken(adminChild1.getEmail(), password); diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/ItemOwningCollectionUpdateRestControllerIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/ItemOwningCollectionUpdateRestControllerIT.java index 73c2c8a3fe59..443f3f07eb24 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/ItemOwningCollectionUpdateRestControllerIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/ItemOwningCollectionUpdateRestControllerIT.java @@ -55,7 +55,7 @@ public void moveItemTestByAnonymous() throws Exception { context.restoreAuthSystemState(); //When we call this owningCollection/move endpoint getClient().perform( - put("/api/core/items/" + publicItem1.getID() + "/owningCollection/") + put("/api/core/items/" + publicItem1.getID() + "/owningCollection") .contentType(parseMediaType(TEXT_URI_LIST_VALUE)) .content( "https://localhost:8080/spring-rest/api/core/collections/" + col2.getID() @@ -91,7 +91,7 @@ public void moveItemTestByAuthorizedUser() throws Exception { //When we call this owningCollection/move endpoint getClient(token) - .perform(put("/api/core/items/" + publicItem1.getID() + "/owningCollection/") + .perform(put("/api/core/items/" + publicItem1.getID() + "/owningCollection") .contentType(parseMediaType(TEXT_URI_LIST_VALUE)) .content( "https://localhost:8080/spring-rest/api/core/collections/" + col2.getID() @@ -131,13 +131,13 @@ public void moveItemTestByMinimallyAuthorizedUser() throws Exception { EPerson itemMoveEperson = EPersonBuilder.createEPerson(context).withEmail("item@move.org").withPassword("test") .withNameInMetadata("Item", "Move").build(); - ResourcePolicy rp1 = ResourcePolicyBuilder.createResourcePolicy(context).withUser(itemMoveEperson) + ResourcePolicy rp1 = ResourcePolicyBuilder.createResourcePolicy(context, itemMoveEperson, null) .withAction(Constants.ADMIN) .withDspaceObject(col1).build(); - ResourcePolicy rp2 = ResourcePolicyBuilder.createResourcePolicy(context).withUser(itemMoveEperson) + ResourcePolicy rp2 = ResourcePolicyBuilder.createResourcePolicy(context, itemMoveEperson, null) .withAction(Constants.WRITE) .withDspaceObject(publicItem1).build(); - ResourcePolicy rp3 = ResourcePolicyBuilder.createResourcePolicy(context).withUser(itemMoveEperson) + ResourcePolicy rp3 = ResourcePolicyBuilder.createResourcePolicy(context, itemMoveEperson, null) .withAction(Constants.ADD) .withDspaceObject(col2).build(); @@ -145,7 +145,7 @@ public void moveItemTestByMinimallyAuthorizedUser() throws Exception { String token = getAuthToken(itemMoveEperson.getEmail(), "test"); getClient(token) - .perform(put("/api/core/items/" + publicItem1.getID() + "/owningCollection/") + .perform(put("/api/core/items/" + publicItem1.getID() + "/owningCollection") .contentType(parseMediaType(TEXT_URI_LIST_VALUE)) .content( "https://localhost:8080/spring-rest/api/core/collections/" + col2.getID() @@ -181,17 +181,17 @@ public void moveItemTestByAuthorizedUserWithoutAdd() throws Exception { EPerson itemMoveEperson = EPersonBuilder.createEPerson(context).withEmail("item@move.org").withPassword("test") .withNameInMetadata("Item", "Move").build(); - ResourcePolicy rp1 = ResourcePolicyBuilder.createResourcePolicy(context).withUser(itemMoveEperson) + ResourcePolicy rp1 = ResourcePolicyBuilder.createResourcePolicy(context, itemMoveEperson, null) .withAction(Constants.ADMIN) .withDspaceObject(col1).build(); - ResourcePolicy rp2 = ResourcePolicyBuilder.createResourcePolicy(context).withUser(itemMoveEperson) + ResourcePolicy rp2 = ResourcePolicyBuilder.createResourcePolicy(context, itemMoveEperson, null) .withAction(Constants.WRITE) .withDspaceObject(publicItem1).build(); context.restoreAuthSystemState(); String token = getAuthToken(itemMoveEperson.getEmail(), "test"); - getClient(token).perform(put("/api/core/items/" + publicItem1.getID() + "/owningCollection/") + getClient(token).perform(put("/api/core/items/" + publicItem1.getID() + "/owningCollection") .contentType(parseMediaType(TEXT_URI_LIST_VALUE)) .content( "https://localhost:8080/spring-rest/api/core/collections/" + col2.getID() @@ -222,17 +222,17 @@ public void moveItemTestByAuthorizedUserWithoutAdmin() throws Exception { EPerson itemMoveEperson = EPersonBuilder.createEPerson(context).withEmail("item@move.org").withPassword("test") .withNameInMetadata("Item", "Move").build(); - ResourcePolicy rp2 = ResourcePolicyBuilder.createResourcePolicy(context).withUser(itemMoveEperson) + ResourcePolicy rp2 = ResourcePolicyBuilder.createResourcePolicy(context, itemMoveEperson, null) .withAction(Constants.WRITE) .withDspaceObject(publicItem1).build(); - ResourcePolicy rp3 = ResourcePolicyBuilder.createResourcePolicy(context).withUser(itemMoveEperson) + ResourcePolicy rp3 = ResourcePolicyBuilder.createResourcePolicy(context, itemMoveEperson, null) .withAction(Constants.ADD) .withDspaceObject(col2).build(); context.restoreAuthSystemState(); String token = getAuthToken(itemMoveEperson.getEmail(), "test"); - getClient(token).perform(put("/api/core/items/" + publicItem1.getID() + "/owningCollection/") + getClient(token).perform(put("/api/core/items/" + publicItem1.getID() + "/owningCollection") .contentType(parseMediaType(TEXT_URI_LIST_VALUE)) .content( "https://localhost:8080/spring-rest/api/core/collections/" + col2.getID() @@ -263,17 +263,17 @@ public void moveItemTestByAuthorizedUserWithoutWrite() throws Exception { EPerson itemMoveEperson = EPersonBuilder.createEPerson(context).withEmail("item@move.org").withPassword("test") .withNameInMetadata("Item", "Move").build(); - ResourcePolicy rp1 = ResourcePolicyBuilder.createResourcePolicy(context).withUser(itemMoveEperson) + ResourcePolicy rp1 = ResourcePolicyBuilder.createResourcePolicy(context, itemMoveEperson, null) .withAction(Constants.ADMIN) .withDspaceObject(col1).build(); - ResourcePolicy rp3 = ResourcePolicyBuilder.createResourcePolicy(context).withUser(itemMoveEperson) + ResourcePolicy rp3 = ResourcePolicyBuilder.createResourcePolicy(context, itemMoveEperson, null) .withAction(Constants.ADD) .withDspaceObject(col2).build(); context.restoreAuthSystemState(); String token = getAuthToken(itemMoveEperson.getEmail(), "test"); - getClient(token).perform(put("/api/core/items/" + publicItem1.getID() + "/owningCollection/") + getClient(token).perform(put("/api/core/items/" + publicItem1.getID() + "/owningCollection") .contentType(parseMediaType(TEXT_URI_LIST_VALUE)) .content( "https://localhost:8080/spring-rest/api/core/collections/" + col2.getID() @@ -310,7 +310,7 @@ public void moveItemForbiddenTest() throws Exception { String tokenEPerson = getAuthToken(eperson.getEmail(), password); - getClient(tokenEPerson).perform(put("/api/core/items/" + publicItem1.getID() + "/owningCollection/") + getClient(tokenEPerson).perform(put("/api/core/items/" + publicItem1.getID() + "/owningCollection") .contentType(parseMediaType(TEXT_URI_LIST_VALUE)) .content("https://localhost:8080/spring-rest/api/core/collections/" + col2.getID())) .andExpect(status().isForbidden()); diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/ItemRestRepositoryIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/ItemRestRepositoryIT.java index 7bed0a8fd67f..ff130d54e73e 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/ItemRestRepositoryIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/ItemRestRepositoryIT.java @@ -46,9 +46,9 @@ import java.util.Map; import java.util.UUID; import java.util.concurrent.atomic.AtomicReference; -import javax.ws.rs.core.MediaType; import com.fasterxml.jackson.databind.ObjectMapper; +import jakarta.ws.rs.core.MediaType; import org.apache.commons.io.IOUtils; import org.apache.commons.lang3.CharEncoding; import org.dspace.app.rest.matcher.BitstreamMatcher; @@ -3059,7 +3059,7 @@ public void specificEmbedTestMultipleLevelOfLinksWithData() throws Exception { BitstreamMatcher.matchBitstreamEntryWithoutEmbed(bitstream2.getID(), bitstream2.getSizeBytes()) ))) .andExpect(jsonPath("$._embedded.owningCollection._embedded.mappedItems." + - "_embedded.mappedItems[0]_embedded.relationships").doesNotExist()) + "_embedded.mappedItems[0]._embedded.relationships").doesNotExist()) .andExpect(jsonPath("$._embedded.owningCollection._embedded.mappedItems" + "._embedded.mappedItems[0]._embedded.bundles._embedded.bundles[0]." + "_embedded.primaryBitstream").doesNotExist()) @@ -3137,8 +3137,7 @@ public void testHiddenMetadataForUserWithWriteRights() throws Exception { context.restoreAuthSystemState(); - ResourcePolicyBuilder.createResourcePolicy(context) - .withUser(eperson) + ResourcePolicyBuilder.createResourcePolicy(context, eperson, null) .withAction(WRITE) .withDspaceObject(item) .build(); @@ -3170,8 +3169,7 @@ public void testHiddenMetadataForUserWithReadRights() throws Exception { context.restoreAuthSystemState(); - ResourcePolicyBuilder.createResourcePolicy(context) - .withUser(eperson) + ResourcePolicyBuilder.createResourcePolicy(context, eperson, null) .withAction(READ) .withDspaceObject(item) .build(); diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/ItemTemplateRestControllerIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/ItemTemplateRestControllerIT.java index 1fd9e81ca88d..f3ba6d3aed1f 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/ItemTemplateRestControllerIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/ItemTemplateRestControllerIT.java @@ -253,9 +253,9 @@ public void patchTemplateItemAsCollectionAdmin() throws Exception { String itemId = installTestTemplate(); - ResourcePolicyBuilder.createResourcePolicy(context).withUser(eperson) - .withAction(Constants.ADMIN) - .withDspaceObject(childCollection).build(); + ResourcePolicyBuilder.createResourcePolicy(context, eperson, null) + .withAction(Constants.ADMIN) + .withDspaceObject(childCollection).build(); String collAdminToken = getAuthToken(eperson.getEmail(), password); getClient(collAdminToken).perform(patch(getTemplateItemUrlTemplate(itemId)) @@ -374,9 +374,9 @@ public void deleteTemplateItemAsCollectionAdmin() throws Exception { setupTestTemplate(); String itemId = installTestTemplate(); - ResourcePolicyBuilder.createResourcePolicy(context).withUser(eperson) - .withAction(Constants.ADMIN) - .withDspaceObject(childCollection).build(); + ResourcePolicyBuilder.createResourcePolicy(context, eperson, null) + .withAction(Constants.ADMIN) + .withDspaceObject(childCollection).build(); String collAdminToken = getAuthToken(eperson.getEmail(), password); getClient(collAdminToken).perform(delete(getTemplateItemUrlTemplate(itemId))) diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/LDNInboxControllerIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/LDNInboxControllerIT.java index 1437c8dd62ef..78410af2e686 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/LDNInboxControllerIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/LDNInboxControllerIT.java @@ -73,8 +73,7 @@ public void ldnInboxAnnounceEndorsementTest() throws Exception { Item item = ItemBuilder.createItem(context, collection).build(); String object = configurationService.getProperty("dspace.ui.url") + "/handle/" + item.getHandle(); NotifyServiceEntity notifyServiceEntity = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name") .withDescription("service description") .withUrl("service url") .withLdnUrl("https://overlay-journal.com/inbox/") @@ -109,12 +108,13 @@ public void ldnInboxAnnounceReviewTest() throws Exception { Item item = ItemBuilder.createItem(context, collection).build(); InputStream announceReviewStream = getClass().getResourceAsStream("ldn_announce_review.json"); String object = configurationService.getProperty("dspace.ui.url") + "/handle/" + item.getHandle(); - NotifyServiceEntity notifyServiceEntity = NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name") + NotifyServiceEntity notifyServiceEntity = + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name") .withDescription("service description") .withUrl("https://review-service.com/inbox/about/") .withLdnUrl("https://review-service.com/inbox/") .withScore(BigDecimal.valueOf(0.6d)) + .withStatus(true) .withLowerIp("127.0.0.1") .withUpperIp("127.0.0.3") .build(); @@ -163,12 +163,13 @@ public void ldnInboxOfferReviewAndACKTest() throws Exception { Collection collection = CollectionBuilder.createCollection(context, community).build(); Item item = ItemBuilder.createItem(context, collection).build(); String object = configurationService.getProperty("dspace.ui.url") + "/handle/" + item.getHandle(); - NotifyServiceEntity notifyServiceEntity = NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name") + NotifyServiceEntity notifyServiceEntity = + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name") .withDescription("service description") .withUrl("https://review-service.com/inbox/about/") .withLdnUrl("https://review-service.com/inbox/") .withScore(BigDecimal.valueOf(0.6d)) + .withStatus(true) .withLowerIp("127.0.0.1") .withUpperIp("127.0.0.3") .build(); @@ -220,12 +221,13 @@ public void ldnInboxAnnounceReleaseTest() throws Exception { Item item = ItemBuilder.createItem(context, collection).build(); InputStream announceRelationshipStream = getClass().getResourceAsStream("ldn_announce_release.json"); String object = configurationService.getProperty("dspace.ui.url") + "/handle/" + item.getHandle(); - NotifyServiceEntity notifyServiceEntity = NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name") + NotifyServiceEntity notifyServiceEntity = + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name") .withDescription("service description") .withUrl("https://review-service.com/inbox/about/") .withLdnUrl("https://review-service.com/inbox/") .withScore(BigDecimal.valueOf(0.6d)) + .withStatus(true) .withLowerIp("127.0.0.1") .withUpperIp("127.0.0.3") .build(); @@ -283,8 +285,7 @@ public void ldnInboxAnnounceEndorsementInvalidIpTest() throws Exception { Item item = ItemBuilder.createItem(context, collection).build(); String object = configurationService.getProperty("dspace.ui.url") + "/handle/" + item.getHandle(); NotifyServiceEntity notifyServiceEntity = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name") .withDescription("service description") .withUrl("service url") .withLdnUrl("https://overlay-journal.com/inbox/") @@ -321,8 +322,7 @@ public void ldnInboxAnnounceEndorsementInvalidInboxTest() throws Exception { Item item = ItemBuilder.createItem(context, collection).build(); String object = configurationService.getProperty("dspace.ui.url") + "/handle/" + item.getHandle(); NotifyServiceEntity notifyServiceEntity = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name") .withDescription("service description") .withUrl("service url") .withLdnUrl("https://overlay-journal.com/inbox/") @@ -359,8 +359,7 @@ public void ldnInboxOutOfRangeIPwithDisabledCheckTest() throws Exception { configurationService.setProperty("ldn.notify.inbox.block-untrusted-ip", false); String object = configurationService.getProperty("dspace.ui.url") + "/handle/" + item.getHandle(); NotifyServiceEntity notifyServiceEntity = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name") .withDescription("service description") .withUrl("service url") .withLdnUrl("https://overlay-journal.com/inbox/") diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/LDNMessageRestControllerIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/LDNMessageRestControllerIT.java index a3001f6019ad..95cdd3c28fbc 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/LDNMessageRestControllerIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/LDNMessageRestControllerIT.java @@ -89,8 +89,7 @@ public void findByItemTest() throws Exception { String object = configurationService.getProperty("dspace.ui.url") + "/handle/" + item.getHandle(); NotifyServiceEntity notifyService = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name") .withDescription("service description") .withUrl("service url") .withLdnUrl("https://overlay-journal.com/inbox/") diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/LDNMessageRestRepositoryIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/LDNMessageRestRepositoryIT.java index 8b9cf3e06656..5dba09c0f84a 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/LDNMessageRestRepositoryIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/LDNMessageRestRepositoryIT.java @@ -7,7 +7,7 @@ */ package org.dspace.app.rest; -import static javax.ws.rs.core.MediaType.APPLICATION_JSON_PATCH_JSON; +import static jakarta.ws.rs.core.MediaType.APPLICATION_JSON_PATCH_JSON; import static org.hamcrest.Matchers.is; import static org.hamcrest.Matchers.nullValue; import static org.springframework.test.web.servlet.request.MockMvcRequestBuilders.delete; @@ -95,8 +95,7 @@ public void findOneTest() throws Exception { String object = configurationService.getProperty("dspace.ui.url") + "/handle/" + item.getHandle(); NotifyServiceEntity notifyService = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name") .withDescription("service description") .withUrl("service url") .withLdnUrl("https://overlay-journal.com/inbox/") @@ -165,8 +164,7 @@ public void findAllTest() throws Exception { String object = configurationService.getProperty("dspace.ui.url") + "/handle/" + item.getHandle(); NotifyServiceEntity notifyService = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name") .withDescription("service description") .withUrl("service url") .withLdnUrl("https://overlay-journal.com/inbox/") diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/LoginAsEPersonIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/LoginAsEPersonIT.java index d98041d0830d..c628922afbf6 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/LoginAsEPersonIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/LoginAsEPersonIT.java @@ -239,6 +239,7 @@ public void createEmptyWorkspaceItemLoginOnBehalfOfCheckSubmitterTest() throws E // create a workspaceitem explicitly in the col1 MvcResult mvcResult = getClient(authToken).perform(post("/api/submission/workspaceitems") .param("owningCollection", col1.getID().toString()) + .param("embed", "collection") .header("X-On-Behalf-Of", eperson.getID()) .contentType(org.springframework .http.MediaType.APPLICATION_JSON)) @@ -252,7 +253,8 @@ public void createEmptyWorkspaceItemLoginOnBehalfOfCheckSubmitterTest() throws E Map map = mapper.readValue(content, Map.class); String workspaceItemId = String.valueOf(map.get("id")); - getClient(authToken).perform(get("/api/submission/workspaceitems/" + workspaceItemId)) + getClient(authToken).perform(get("/api/submission/workspaceitems/" + workspaceItemId) + .param("embed", "submitter")) .andExpect(jsonPath("$._embedded.submitter", EPersonMatcher.matchProperties(eperson))); } diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/MappedCollectionRestRepositoryIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/MappedCollectionRestRepositoryIT.java index f38f5ced75ff..a32886da2015 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/MappedCollectionRestRepositoryIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/MappedCollectionRestRepositoryIT.java @@ -108,7 +108,7 @@ public void itemAndCollectionHaveOneMappingTest() throws Exception { String adminToken = getAuthToken(admin.getEmail(), password); getClient(adminToken).perform( - post("/api/core/items/" + publicItem1.getID() + "/mappedCollections/") + post("/api/core/items/" + publicItem1.getID() + "/mappedCollections") .contentType(parseMediaType(TEXT_URI_LIST_VALUE)) .content( "https://localhost:8080/spring-rest/api/core/collections/" + col2.getID() + "\n" @@ -164,7 +164,7 @@ public void itemAndTwoCollectionsHaveTwoMappingsTest() throws Exception { String adminToken = getAuthToken(admin.getEmail(), password); getClient(adminToken) - .perform(post("/api/core/items/" + publicItem1.getID() + "/mappedCollections/") + .perform(post("/api/core/items/" + publicItem1.getID() + "/mappedCollections") .contentType(parseMediaType(TEXT_URI_LIST_VALUE)) .content( "https://localhost:8080/spring-rest/api/core/collections/" + col2.getID() + "\n" + @@ -229,7 +229,7 @@ public void itemHasNoDuplicatesInMappedCollectionAndCollectionHasNoDuplicatesInM String adminToken = getAuthToken(admin.getEmail(), password); getClient(adminToken) - .perform(post("/api/core/items/" + publicItem1.getID() + "/mappedCollections/") + .perform(post("/api/core/items/" + publicItem1.getID() + "/mappedCollections") .contentType(parseMediaType(TEXT_URI_LIST_VALUE)) .content( "https://localhost:8080/spring-rest/api/core/collections/" + col2.getID() + "\n" + @@ -283,7 +283,7 @@ public void itemHasNoOriginalCollectionInMappedCollectionAndCollectionHasNoOrigi String adminToken = getAuthToken(admin.getEmail(), password); getClient(adminToken) - .perform(post("/api/core/items/" + publicItem1.getID() + "/mappedCollections/") + .perform(post("/api/core/items/" + publicItem1.getID() + "/mappedCollections") .contentType(parseMediaType(TEXT_URI_LIST_VALUE)) .content( "https://localhost:8080/spring-rest/api/core/collections/" + col2.getID() + "\n" + @@ -335,7 +335,7 @@ public void removeMappedCollectionTest() throws Exception { String adminToken = getAuthToken(admin.getEmail(), password); getClient(adminToken) - .perform(post("/api/core/items/" + publicItem1.getID() + "/mappedCollections/") + .perform(post("/api/core/items/" + publicItem1.getID() + "/mappedCollections") .contentType(parseMediaType(TEXT_URI_LIST_VALUE)) .content( "https://localhost:8080/spring-rest/api/core/collections/" + col2.getID() + "\n" + @@ -443,7 +443,7 @@ public void doNotAllowMappedCollectionIfGivenCollectionIsOwningCollectionOfGiven String adminToken = getAuthToken(admin.getEmail(), password); getClient(adminToken) - .perform(post("/api/core/items/" + publicItem1.getID() + "/mappedCollections/") + .perform(post("/api/core/items/" + publicItem1.getID() + "/mappedCollections") .contentType(parseMediaType(TEXT_URI_LIST_VALUE)) .content("https://localhost:8080/spring-rest/api/core/collections/" + col1.getID()) ) @@ -503,7 +503,7 @@ public void doNotAllowMappedCollectionWithATemplateItem() throws Exception { String adminToken = getAuthToken(admin.getEmail(), password); getClient(adminToken) - .perform(post("/api/core/items/" + templateItem.getID() + "/mappedCollections/") + .perform(post("/api/core/items/" + templateItem.getID() + "/mappedCollections") .contentType(parseMediaType(TEXT_URI_LIST_VALUE)) .content("https://localhost:8080/spring-rest/api/core/collections/" + col2.getID()) ) @@ -563,14 +563,14 @@ public void mappedCollectionNeedsValidIDs() throws Exception { String adminToken = getAuthToken(admin.getEmail(), password); getClient(adminToken) - .perform(post("/api/core/items/" + publicItem1.getID() + "/mappedCollections/") + .perform(post("/api/core/items/" + publicItem1.getID() + "/mappedCollections") .contentType(parseMediaType(TEXT_URI_LIST_VALUE)) .content("https://localhost:8080/spring-rest/api/core/collections/" + "badCollectionID") ) .andExpect(status().isUnprocessableEntity()); getClient(adminToken) - .perform(post("/api/core/items/" + "badItemID" + "/mappedCollections/") + .perform(post("/api/core/items/" + "badItemID" + "/mappedCollections") .contentType(parseMediaType(TEXT_URI_LIST_VALUE)) .content("https://localhost:8080/spring-rest/api/core/collections/" + col1.getID()) ) @@ -646,7 +646,7 @@ public void mappingNewCollectionCannotBeDoneAnonymouslyTest() throws Exception { // itemService.update(context, publicItem1); getClient().perform( - post("/api/core/items/" + publicItem1.getID() + "/mappedCollections/") + post("/api/core/items/" + publicItem1.getID() + "/mappedCollections") .contentType(parseMediaType(TEXT_URI_LIST_VALUE)) .content( "https://localhost:8080/spring-rest/api/core/collections/" + col2.getID() @@ -686,7 +686,7 @@ public void removingMappedCollectionCannotBeDoneAnonymouslyTest() throws Excepti String adminToken = getAuthToken(admin.getEmail(), password); getClient(adminToken).perform( - post("/api/core/items/" + publicItem1.getID() + "/mappedCollections/") + post("/api/core/items/" + publicItem1.getID() + "/mappedCollections") .contentType(parseMediaType(TEXT_URI_LIST_VALUE)) .content( "https://localhost:8080/spring-rest/api/core/collections/" + col2.getID() @@ -735,7 +735,7 @@ public void mappedItemAppearsInCollectionBrowseTest() throws Exception { // Map the item to the sink collection getClient(adminToken).perform( - post("/api/core/items/" + item.getID() + "/mappedCollections/") + post("/api/core/items/" + item.getID() + "/mappedCollections") .contentType(parseMediaType(TEXT_URI_LIST_VALUE)) .content( "https://localhost:8080/spring-rest/api/core/collections/" + sink.getID() + "\n" @@ -782,7 +782,7 @@ public void unmappedItemIsRemovedFromCollectionBrowseTest() throws Exception { //3. The item mapped to the sink collection getClient(adminToken).perform( - post("/api/core/items/" + item.getID() + "/mappedCollections/") + post("/api/core/items/" + item.getID() + "/mappedCollections") .contentType(parseMediaType(TEXT_URI_LIST_VALUE)) .content( "https://localhost:8080/spring-rest/api/core/collections/" + sink.getID() + "\n" diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/NotifyRequestStatusRestControllerIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/NotifyRequestStatusRestControllerIT.java index a7077f20da18..700e1eab9528 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/NotifyRequestStatusRestControllerIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/NotifyRequestStatusRestControllerIT.java @@ -57,11 +57,12 @@ public void oneStatusReviewedTest() throws Exception { Collection collection = CollectionBuilder.createCollection(context, community).build(); Item item = ItemBuilder.createItem(context, collection).build(); String object = configurationService.getProperty("dspace.ui.url") + "/handle/" + item.getHandle(); - NotifyServiceEntity notifyServiceEntity = NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name") + NotifyServiceEntity notifyServiceEntity = + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name") .withDescription("service description") .withUrl("https://review-service.com/inbox/about/") .withLdnUrl("https://review-service.com/inbox/") + .withStatus(true) .withScore(BigDecimal.valueOf(0.6d)) .build(); //SEND OFFER REVIEW @@ -96,6 +97,41 @@ public void oneStatusReviewedTest() throws Exception { ; } + @Test + public void oneStatusAnnounceEndorsementTestDisabledService() throws Exception { + context.turnOffAuthorisationSystem(); + Community community = CommunityBuilder.createCommunity(context).withName("community").build(); + Collection collection = CollectionBuilder.createCollection(context, community).build(); + Item item = ItemBuilder.createItem(context, collection).build(); + String object = configurationService.getProperty("dspace.ui.url") + "/handle/" + item.getHandle(); + NotifyServiceEntity notifyServiceEntity = NotifyServiceBuilder + .createNotifyServiceBuilder(context, "service name") + .withDescription("service description") + .withUrl("https://review-service.com/inbox/about/") + .withLdnUrl("https://review-service.com/inbox/") + .withStatus(false) // service is disabled + .withScore(BigDecimal.valueOf(0.6d)) + .build(); + //SEND OFFER REVIEW + InputStream offerReviewStream = getClass().getResourceAsStream("ldn_offer_review3.json"); + String announceReview = IOUtils.toString(offerReviewStream, Charset.defaultCharset()); + offerReviewStream.close(); + String message = announceReview.replaceAll("<>", object); + ObjectMapper mapper = new ObjectMapper(); + Notification notification = mapper.readValue(message, Notification.class); + getClient() + .perform(post("/ldn/inbox") + .contentType("application/ld+json") + .content(message)) + .andExpect(status().isAccepted()); + + int processed = ldnMessageService.extractAndProcessMessageFromQueue(context); + assertEquals(processed, 0); + processed = ldnMessageService.extractAndProcessMessageFromQueue(context); + assertEquals(processed, 0); + + } + @Test public void oneStatusRejectedTest() throws Exception { context.turnOffAuthorisationSystem(); @@ -103,11 +139,12 @@ public void oneStatusRejectedTest() throws Exception { Collection collection = CollectionBuilder.createCollection(context, community).build(); Item item = ItemBuilder.createItem(context, collection).build(); String object = configurationService.getProperty("dspace.ui.url") + "/handle/" + item.getHandle(); - NotifyServiceEntity notifyServiceEntity = NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name") + NotifyServiceEntity notifyServiceEntity = + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name") .withDescription("service description") .withUrl("https://review-service.com/inbox/about/") .withLdnUrl("https://review-service.com/inbox/") + .withStatus(true) .withScore(BigDecimal.valueOf(0.6d)) .build(); //SEND OFFER REVIEW diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/NotifyServiceRestRepositoryIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/NotifyServiceRestRepositoryIT.java index 984b9b573e5c..15b1ffc7cc48 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/NotifyServiceRestRepositoryIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/NotifyServiceRestRepositoryIT.java @@ -32,9 +32,9 @@ import java.util.ArrayList; import java.util.List; import java.util.concurrent.atomic.AtomicReference; -import javax.ws.rs.core.MediaType; import com.fasterxml.jackson.databind.ObjectMapper; +import jakarta.ws.rs.core.MediaType; import org.apache.commons.collections4.CollectionUtils; import org.apache.commons.lang3.RandomUtils; import org.dspace.app.ldn.NotifyServiceEntity; @@ -75,24 +75,21 @@ public void findAllUnAuthorizedTest() throws Exception { public void findAllTest() throws Exception { context.turnOffAuthorisationSystem(); NotifyServiceEntity notifyServiceEntityOne = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name one") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name one") .withDescription("service description one") .withUrl("https://service.ldn.org/about") .withLdnUrl("https://service.ldn.org/inbox") .build(); NotifyServiceEntity notifyServiceEntityTwo = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name two") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name two") .withDescription("service description two") .withUrl("https://service2.ldn.org/about") .withLdnUrl("https://service2.ldn.org/inbox") .build(); NotifyServiceEntity notifyServiceEntityThree = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name three") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name three") .withDescription("service description three") .withUrl("https://service3.ldn.org/about") .withLdnUrl("https://service3.ldn.org/inbox") @@ -132,8 +129,7 @@ public void findOneNotFoundTest() throws Exception { public void findOneTest() throws Exception { context.turnOffAuthorisationSystem(); NotifyServiceEntity notifyServiceEntity = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name") .withDescription("service description") .withUrl("https://service.ldn.org/about") .withLdnUrl("https://service.ldn.org/inbox") @@ -238,6 +234,9 @@ public void createTest() throws Exception { matchNotifyServicePattern("patternB", null, false) ))) )); + + // Delete the created service + NotifyServiceBuilder.deleteNotifyService(idRef.get()); } @Test @@ -246,8 +245,7 @@ public void notifyServicePatchOperationForbiddenTest() throws Exception { context.turnOffAuthorisationSystem(); NotifyServiceEntity notifyServiceEntity = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name") .withDescription("service description") .withUrl("https://service.ldn.org/about") .withLdnUrl("https://service.ldn.org/inbox") @@ -274,8 +272,7 @@ public void notifyServiceDescriptionAddOperationBadRequestTest() throws Exceptio context.turnOffAuthorisationSystem(); NotifyServiceEntity notifyServiceEntity = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name") .withDescription("service description") .withUrl("https://service.ldn.org/about") .withLdnUrl("https://service.ldn.org/inbox") @@ -302,8 +299,7 @@ public void notifyServiceDescriptionAddOperationTest() throws Exception { context.turnOffAuthorisationSystem(); NotifyServiceEntity notifyServiceEntity = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name") .withUrl("https://service.ldn.org/about") .withLdnUrl("https://service.ldn.org/inbox") .isEnabled(false) @@ -333,8 +329,7 @@ public void notifyServiceDescriptionReplaceOperationBadRequestTest() throws Exce context.turnOffAuthorisationSystem(); NotifyServiceEntity notifyServiceEntity = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name") .withUrl("https://service.ldn.org/about") .withLdnUrl("https://service.ldn.org/inbox") .build(); @@ -360,8 +355,7 @@ public void notifyServiceDescriptionReplaceOperationTest() throws Exception { context.turnOffAuthorisationSystem(); NotifyServiceEntity notifyServiceEntity = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name") .withDescription("service description") .withUrl("https://service.ldn.org/about") .withLdnUrl("https://service.ldn.org/inbox") @@ -392,8 +386,7 @@ public void notifyServiceDescriptionRemoveOperationTest() throws Exception { context.turnOffAuthorisationSystem(); NotifyServiceEntity notifyServiceEntity = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name") .withDescription("service description") .withUrl("https://service.ldn.org/about") .withLdnUrl("https://service.ldn.org/inbox") @@ -424,8 +417,7 @@ public void notifyServiceUrlAddOperationBadRequestTest() throws Exception { context.turnOffAuthorisationSystem(); NotifyServiceEntity notifyServiceEntity = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name") .withDescription("service description") .withUrl("https://service.ldn.org/about") .withLdnUrl("https://service.ldn.org/inbox") @@ -452,8 +444,7 @@ public void notifyServiceUrlAddOperationTest() throws Exception { context.turnOffAuthorisationSystem(); NotifyServiceEntity notifyServiceEntity = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name") .withDescription("service description") .withLdnUrl("https://service.ldn.org/inbox") .build(); @@ -482,8 +473,7 @@ public void notifyServiceUrlReplaceOperationBadRequestTest() throws Exception { context.turnOffAuthorisationSystem(); NotifyServiceEntity notifyServiceEntity = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name") .withDescription("service description") .withLdnUrl("https://service.ldn.org/inbox") .build(); @@ -509,8 +499,7 @@ public void notifyServiceUrlReplaceOperationTest() throws Exception { context.turnOffAuthorisationSystem(); NotifyServiceEntity notifyServiceEntity = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name") .withDescription("service description") .withUrl("https://service.ldn.org/about") .withLdnUrl("https://service.ldn.org/inbox") @@ -541,8 +530,7 @@ public void notifyServiceUrlRemoveOperationTest() throws Exception { context.turnOffAuthorisationSystem(); NotifyServiceEntity notifyServiceEntity = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name") .withDescription("service description") .withUrl("https://service.ldn.org/about") .withLdnUrl("https://service.ldn.org/inbox") @@ -566,13 +554,16 @@ public void notifyServiceUrlRemoveOperationTest() throws Exception { ); } + // TODO: Test is currently ignored as the code in this test is IDENTICAL to the code in + // "notifyServiceNameReplaceOperationTest". It's unclear WHY this should throw a 400 exception? @Test + @Ignore public void notifyServiceNameReplaceOperationBadRequestTest() throws Exception { context.turnOffAuthorisationSystem(); NotifyServiceEntity notifyServiceEntity = - NotifyServiceBuilder.createNotifyServiceBuilder(context) + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name") .withDescription("service description") .withUrl("https://service.ldn.org/about") .withLdnUrl("https://service.ldn.org/inbox") @@ -599,8 +590,7 @@ public void notifyServiceNameReplaceOperationTest() throws Exception { context.turnOffAuthorisationSystem(); NotifyServiceEntity notifyServiceEntity = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name") .withDescription("service description") .withUrl("https://service.ldn.org/about") .withLdnUrl("https://service.ldn.org/inbox") @@ -630,8 +620,7 @@ public void notifyServiceLdnUrlReplaceOperationBadRequestTest() throws Exception context.turnOffAuthorisationSystem(); NotifyServiceEntity notifyServiceEntity = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name") .withUrl("https://service.ldn.org/about") .build(); context.restoreAuthSystemState(); @@ -656,8 +645,7 @@ public void notifyServiceLdnUrlReplaceOperationTest() throws Exception { context.turnOffAuthorisationSystem(); NotifyServiceEntity notifyServiceEntity = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name") .withDescription("service description") .withUrl("https://service.ldn.org/about") .withLdnUrl("https://service.ldn.org/inbox") @@ -687,8 +675,7 @@ public void notifyServiceNameRemoveOperationTest() throws Exception { context.turnOffAuthorisationSystem(); NotifyServiceEntity notifyServiceEntity = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name") .withDescription("service description") .withUrl("https://service.ldn.org/about") .withLdnUrl("https://service.ldn.org/inbox") @@ -720,8 +707,7 @@ public void notifyServiceLdnUrlRemoveOperationTest() throws Exception { context.turnOffAuthorisationSystem(); NotifyServiceEntity notifyServiceEntity = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name") .withDescription("service description") .withUrl("https://service.ldn.org/about") .withLdnUrl("https://service.ldn.org/inbox") @@ -760,23 +746,20 @@ public void findByLdnUrlBadRequestTest() throws Exception { public void findByLdnUrlTest() throws Exception { context.turnOffAuthorisationSystem(); NotifyServiceEntity notifyServiceEntityOne = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name one") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name one") .withDescription("service description one") .withUrl("https://service.ldn.org/about") .withLdnUrl("https://service.ldn.org/inbox") .build(); NotifyServiceEntity notifyServiceEntityTwo = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name two") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name two") .withDescription("service description two") .withUrl("https://service2.ldn.org/about") .withLdnUrl("https://service2.ldn.org/inbox") .build(); - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name three") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name three") .withDescription("service description three") .withUrl("https://service3.ldn.org/about") .withLdnUrl("https://service3.ldn.org/inbox") @@ -818,8 +801,7 @@ public void deleteNotFoundTest() throws Exception { public void deleteTest() throws Exception { context.turnOffAuthorisationSystem(); NotifyServiceEntity notifyServiceEntity = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name") .withDescription("service description") .withUrl("https://service.ldn.org/about") .withLdnUrl("service ldnUrl") @@ -842,8 +824,7 @@ public void NotifyServiceInboundPatternsAddOperationTest() throws Exception { context.turnOffAuthorisationSystem(); NotifyServiceEntity notifyServiceEntity = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name") .withDescription("service description") .withUrl("https://service.ldn.org/about") .withLdnUrl("https://service.ldn.org/inbox") @@ -886,8 +867,7 @@ public void NotifyServiceInboundPatternsAddOperationBadRequestTest() throws Exce context.turnOffAuthorisationSystem(); NotifyServiceEntity notifyServiceEntity = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name") .withDescription("service description") .withUrl("https://service.ldn.org/about") .withLdnUrl("https://service.ldn.org/inbox") @@ -937,8 +917,7 @@ public void NotifyServiceInboundPatternRemoveOperationTest() throws Exception { context.turnOffAuthorisationSystem(); NotifyServiceEntity notifyServiceEntity = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name") .withDescription("service description") .withUrl("https://service.ldn.org/about") .withLdnUrl("https://service.ldn.org/inbox") @@ -1001,8 +980,7 @@ public void NotifyServiceInboundPatternsRemoveOperationBadRequestTest() throws E context.turnOffAuthorisationSystem(); NotifyServiceEntity notifyServiceEntity = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name") .withDescription("service description") .withUrl("https://service.ldn.org/about") .withLdnUrl("https://service.ldn.org/inbox") @@ -1052,8 +1030,7 @@ public void NotifyServiceInboundPatternConstraintAddOperationTest() throws Excep context.turnOffAuthorisationSystem(); NotifyServiceEntity notifyServiceEntity = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name") .withDescription("service description") .withUrl("https://service.ldn.org/about") .withLdnUrl("https://service.ldn.org/inbox") @@ -1118,8 +1095,7 @@ public void NotifyServiceInboundPatternConstraintAddOperationBadRequestTest() th context.turnOffAuthorisationSystem(); NotifyServiceEntity notifyServiceEntity = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name") .withDescription("service description") .withUrl("https://service.ldn.org/about") .withLdnUrl("https://service.ldn.org/inbox") @@ -1175,8 +1151,7 @@ public void NotifyServiceInboundPatternConstraintReplaceOperationTest() throws E context.turnOffAuthorisationSystem(); NotifyServiceEntity notifyServiceEntity = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name") .withDescription("service description") .withUrl("https://service.ldn.org/about") .withLdnUrl("https://service.ldn.org/inbox") @@ -1241,8 +1216,7 @@ public void NotifyServiceInboundPatternConstraintReplaceOperationBadRequestTest( context.turnOffAuthorisationSystem(); NotifyServiceEntity notifyServiceEntity = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name") .withDescription("service description") .withUrl("https://service.ldn.org/about") .withLdnUrl("https://service.ldn.org/inbox") @@ -1292,14 +1266,14 @@ public void NotifyServiceInboundPatternConstraintReplaceOperationBadRequestTest( .andExpect(status().isBadRequest()); } + @Test public void NotifyServiceInboundPatternConstraintRemoveOperationTest() throws Exception { context.turnOffAuthorisationSystem(); NotifyServiceEntity notifyServiceEntity = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name") .withDescription("service description") .withUrl("https://service.ldn.org/about") .withLdnUrl("https://service.ldn.org/inbox") @@ -1363,8 +1337,7 @@ public void NotifyServiceInboundPatternConstraintRemoveOperationBadRequestTest() context.turnOffAuthorisationSystem(); NotifyServiceEntity notifyServiceEntity = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name") .withDescription("service description") .withUrl("https://service.ldn.org/about") .withLdnUrl("https://service.ldn.org/inbox") @@ -1414,8 +1387,7 @@ public void NotifyServiceInboundPatternPatternAddOperationTest() throws Exceptio context.turnOffAuthorisationSystem(); NotifyServiceEntity notifyServiceEntity = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name") .withDescription("service description") .withUrl("https://service.ldn.org/about") .withLdnUrl("https://service.ldn.org/inbox") @@ -1480,8 +1452,7 @@ public void NotifyServiceInboundPatternPatternAddOperationBadRequestTest() throw context.turnOffAuthorisationSystem(); NotifyServiceEntity notifyServiceEntity = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name") .withDescription("service description") .withUrl("https://service.ldn.org/about") .withLdnUrl("https://service.ldn.org/inbox") @@ -1537,8 +1508,7 @@ public void NotifyServiceInboundPatternPatternReplaceOperationTest() throws Exce context.turnOffAuthorisationSystem(); NotifyServiceEntity notifyServiceEntity = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name") .withDescription("service description") .withUrl("https://service.ldn.org/about") .withLdnUrl("https://service.ldn.org/inbox") @@ -1603,8 +1573,7 @@ public void NotifyServiceInboundPatternPatternReplaceOperationBadRequestTest() t context.turnOffAuthorisationSystem(); NotifyServiceEntity notifyServiceEntity = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name") .withDescription("service description") .withUrl("https://service.ldn.org/about") .withLdnUrl("https://service.ldn.org/inbox") @@ -1660,8 +1629,7 @@ public void NotifyServiceInboundPatternAutomaticReplaceOperationTest() throws Ex context.turnOffAuthorisationSystem(); NotifyServiceEntity notifyServiceEntity = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name") .withDescription("service description") .withUrl("https://service.ldn.org/about") .withLdnUrl("https://service.ldn.org/inbox") @@ -1726,8 +1694,7 @@ public void NotifyServiceInboundPatternAutomaticReplaceOperationBadRequestTest() context.turnOffAuthorisationSystem(); NotifyServiceEntity notifyServiceEntity = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name") .withDescription("service description") .withUrl("https://service.ldn.org/about") .withLdnUrl("https://service.ldn.org/inbox") @@ -1783,8 +1750,7 @@ public void NotifyServiceInboundPatternsReplaceOperationTest() throws Exception context.turnOffAuthorisationSystem(); NotifyServiceEntity notifyServiceEntity = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name") .withDescription("service description") .withUrl("https://service.ldn.org/about") .withLdnUrl("https://service.ldn.org/inbox") @@ -1850,8 +1816,7 @@ public void NotifyServiceInboundPatternsReplaceWithEmptyArrayOperationTest() thr context.turnOffAuthorisationSystem(); NotifyServiceEntity notifyServiceEntity = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name") .withDescription("service description") .withUrl("https://service.ldn.org/about") .withLdnUrl("https://service.ldn.org/inbox") @@ -1907,8 +1872,7 @@ public void NotifyServiceInboundPatternsReplaceOperationBadRequestTest() throws context.turnOffAuthorisationSystem(); NotifyServiceEntity notifyServiceEntity = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name") .withDescription("service description") .withUrl("https://service.ldn.org/about") .withLdnUrl("https://service.ldn.org/inbox") @@ -1964,8 +1928,7 @@ public void NotifyServiceInboundPatternsRemoveOperationTest() throws Exception { context.turnOffAuthorisationSystem(); NotifyServiceEntity notifyServiceEntity = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name") .withDescription("service description") .withUrl("https://service.ldn.org/about") .withLdnUrl("https://service.ldn.org/inbox") @@ -2020,8 +1983,7 @@ public void NotifyServiceInboundPatternReplaceOperationTest() throws Exception { context.turnOffAuthorisationSystem(); NotifyServiceEntity notifyServiceEntity = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name") .withDescription("service description") .withUrl("https://service.ldn.org/about") .withLdnUrl("https://service.ldn.org/inbox") @@ -2101,26 +2063,26 @@ public void findManualServicesByInboundPatternTest() throws Exception { context.turnOffAuthorisationSystem(); NotifyServiceEntity notifyServiceEntityOne = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name one") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name one") .withDescription("service description one") .withUrl("https://service.ldn.org/about") + .withStatus(true) .withLdnUrl("https://service.ldn.org/inbox") .build(); NotifyServiceEntity notifyServiceEntityTwo = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name two") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name two") .withDescription("service description two") .withUrl("https://service2.ldn.org/about") + .withStatus(true) .withLdnUrl("https://service2.ldn.org/inbox") .build(); NotifyServiceEntity notifyServiceEntityThree = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name three") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name three") .withDescription("service description") .withUrl("https://service3.ldn.org/about") + .withStatus(true) .withLdnUrl("https://service3.ldn.org/inbox") .build(); @@ -2175,8 +2137,7 @@ public void NotifyServiceStatusReplaceOperationTest() throws Exception { context.turnOffAuthorisationSystem(); NotifyServiceEntity notifyServiceEntity = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name") .withDescription("service description") .withUrl("https://service.ldn.org/about") .withLdnUrl("https://service.ldn.org/inbox") @@ -2204,8 +2165,7 @@ public void NotifyServiceStatusReplaceOperationTest() throws Exception { public void NotifyServiceScoreReplaceOperationTest() throws Exception { context.turnOffAuthorisationSystem(); NotifyServiceEntity notifyServiceEntity = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name") .withDescription("service description") .withScore(BigDecimal.ZERO) .withUrl("https://service.ldn.org/about") @@ -2235,8 +2195,7 @@ public void NotifyServiceScoreReplaceOperationTestUnprocessableTest() throws Exc context.turnOffAuthorisationSystem(); NotifyServiceEntity notifyServiceEntity = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name") .withDescription("service description") .withUrl("service url") .withLdnUrl("service ldn url") @@ -2264,8 +2223,7 @@ public void notifyServiceScoreAddOperationTest() throws Exception { context.turnOffAuthorisationSystem(); NotifyServiceEntity notifyServiceEntity = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name") .withDescription("service description") .withUrl("service url") .withLdnUrl("service ldn url") @@ -2315,8 +2273,7 @@ public void notifyServiceLowerIpReplaceOperationBadRequestTest() throws Exceptio context.turnOffAuthorisationSystem(); NotifyServiceEntity notifyServiceEntity = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name") .withUrl("https://service.ldn.org/about") .build(); context.restoreAuthSystemState(); @@ -2341,8 +2298,7 @@ public void notifyServiceLowerIpReplaceOperationTest() throws Exception { context.turnOffAuthorisationSystem(); NotifyServiceEntity notifyServiceEntity = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name") .withDescription("service description") .withUrl("https://service.ldn.org/about") .withLdnUrl("https://service.ldn.org/inbox") @@ -2375,8 +2331,7 @@ public void notifyServiceLowerIpRemoveOperationTest() throws Exception { context.turnOffAuthorisationSystem(); NotifyServiceEntity notifyServiceEntity = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name") .withDescription("service description") .withUrl("https://service.ldn.org/about") .withLdnUrl("https://service.ldn.org/inbox") @@ -2405,8 +2360,7 @@ public void notifyServiceUpperIpReplaceOperationBadRequestTest() throws Exceptio context.turnOffAuthorisationSystem(); NotifyServiceEntity notifyServiceEntity = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name") .withUrl("https://service.ldn.org/about") .build(); context.restoreAuthSystemState(); @@ -2431,8 +2385,7 @@ public void notifyServiceUpperIpReplaceOperationTest() throws Exception { context.turnOffAuthorisationSystem(); NotifyServiceEntity notifyServiceEntity = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name") .withDescription("service description") .withUrl("https://service.ldn.org/about") .withLdnUrl("https://service.ldn.org/inbox") @@ -2465,8 +2418,7 @@ public void notifyServiceUpperIpRemoveOperationTest() throws Exception { context.turnOffAuthorisationSystem(); NotifyServiceEntity notifyServiceEntity = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name") .withDescription("service description") .withUrl("https://service.ldn.org/about") .withLdnUrl("https://service.ldn.org/inbox") diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/OidcAuthenticationRestControllerIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/OidcAuthenticationRestControllerIT.java index aa1ecd5ebf48..b3a805fda548 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/OidcAuthenticationRestControllerIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/OidcAuthenticationRestControllerIT.java @@ -25,10 +25,10 @@ import java.text.ParseException; import java.util.Map; -import javax.servlet.http.Cookie; import com.nimbusds.jose.JOSEException; import com.nimbusds.jwt.SignedJWT; +import jakarta.servlet.http.Cookie; import org.dspace.app.rest.model.AuthnRest; import org.dspace.app.rest.security.jwt.EPersonClaimProvider; import org.dspace.app.rest.test.AbstractControllerIntegrationTest; diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/OrcidLoginFilterIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/OrcidLoginFilterIT.java index 5d2be85a6fc6..8126996d1074 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/OrcidLoginFilterIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/OrcidLoginFilterIT.java @@ -29,12 +29,12 @@ import static org.springframework.test.web.servlet.result.MockMvcResultMatchers.redirectedUrl; import static org.springframework.test.web.servlet.result.MockMvcResultMatchers.status; +import jakarta.servlet.http.Cookie; import java.sql.SQLException; import java.text.ParseException; import java.util.UUID; import java.util.regex.Matcher; import java.util.regex.Pattern; -import javax.servlet.http.Cookie; import com.jayway.jsonpath.JsonPath; import com.nimbusds.jose.JOSEException; diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/PatchMetadataIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/PatchMetadataIT.java index c16d81db4f15..4eb3daf31f99 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/PatchMetadataIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/PatchMetadataIT.java @@ -94,8 +94,8 @@ private static final String getPath(Object element) { @Autowired private ConfigurationService configurationService; - private Collection collection; - private Collection collection2; + private Collection personCollection; + private Collection publicationCollection; private WorkspaceItem publicationWorkspaceItem; private Item publicationItem; private Item personItem1; @@ -118,12 +118,12 @@ public void setUp() throws Exception { Community community = CommunityBuilder.createCommunity(context) .withName("Parent community") .build(); - collection = CollectionBuilder.createCollection(context, community) + personCollection = CollectionBuilder.createCollection(context, community) .withName("Collection") .withEntityType("Person") .withSubmissionDefinition("traditional") .build(); - collection2 = CollectionBuilder.createCollection(context, community) + publicationCollection = CollectionBuilder.createCollection(context, community) .withName("Collection") .withEntityType("Publication") .withSubmissionDefinition("traditional") @@ -164,17 +164,17 @@ private void initPersonPublicationWorkspace() throws Exception { context.turnOffAuthorisationSystem(); - personItem1 = ItemBuilder.createItem(context, collection) + personItem1 = ItemBuilder.createItem(context, personCollection) .withTitle("Person 1") .withPersonIdentifierFirstName("Sarah") .withPersonIdentifierLastName("Dahlen") .build(); - personItem2 = ItemBuilder.createItem(context, collection) + personItem2 = ItemBuilder.createItem(context, personCollection) .withTitle("Person 2") .withPersonIdentifierFirstName("Oliver") .withPersonIdentifierLastName("Linton") .build(); - publicationWorkspaceItem = WorkspaceItemBuilder.createWorkspaceItem(context, collection2) + publicationWorkspaceItem = WorkspaceItemBuilder.createWorkspaceItem(context, publicationCollection) .withTitle("Publication 1") .build(); publicationPersonRelationshipType = relationshipTypeService.findbyTypesAndTypeName(context, @@ -256,7 +256,7 @@ private void initSimplePublicationItem() throws Exception { context.turnOffAuthorisationSystem(); - publicationItem = ItemBuilder.createItem(context, collection) + publicationItem = ItemBuilder.createItem(context, publicationCollection) .withTitle("Publication 1") .build(); @@ -306,7 +306,7 @@ private void initPlainTextPublicationWorkspace() throws Exception { context.turnOffAuthorisationSystem(); - publicationWorkspaceItem = WorkspaceItemBuilder.createWorkspaceItem(context, collection) + publicationWorkspaceItem = WorkspaceItemBuilder.createWorkspaceItem(context, publicationCollection) .withTitle("Publication 1") .withEntityType("Publication") .build(); @@ -1229,7 +1229,7 @@ public void removeAllAuthorsOnTraditionalPageTest() throws Exception { getClient(token).perform(patch("/api/submission/workspaceitems/" + publicationWorkspaceItem.getID()) .content(patchBody) - .contentType(javax.ws.rs.core.MediaType.APPLICATION_JSON_PATCH_JSON)) + .contentType(jakarta.ws.rs.core.MediaType.APPLICATION_JSON_PATCH_JSON)) .andExpect(status().isOk()); String authorField = "dc.contributor.author"; @@ -1296,7 +1296,7 @@ public void patchAddAllAuthorsOnTraditionalPageNotExistentRelationTest() throws getClient(token).perform(patch("/api/submission/workspaceitems/" + publicationWorkspaceItem.getID()) .content(patchBody) - .contentType(javax.ws.rs.core.MediaType.APPLICATION_JSON_PATCH_JSON)) + .contentType(jakarta.ws.rs.core.MediaType.APPLICATION_JSON_PATCH_JSON)) .andExpect(status().isUnprocessableEntity()); } @@ -1456,7 +1456,7 @@ private void moveMetadataAuthorTest(List moves, List expected getClient(token).perform(patch("/api/core/items/" + publicationItem.getID()) .content(patchBody) - .contentType(javax.ws.rs.core.MediaType.APPLICATION_JSON_PATCH_JSON)) + .contentType(jakarta.ws.rs.core.MediaType.APPLICATION_JSON_PATCH_JSON)) .andExpect(status().isOk()); String authorField = "dc.contributor.author"; @@ -1517,7 +1517,7 @@ private void assertReplacementOrder(List expectedOrder, String patchBody .perform( patch("/api/submission/workspaceitems/" + publicationWorkspaceItem.getID()) .content(patchBody) - .contentType(javax.ws.rs.core.MediaType.APPLICATION_JSON_PATCH_JSON) + .contentType(jakarta.ws.rs.core.MediaType.APPLICATION_JSON_PATCH_JSON) ) .andExpect(status().isOk()); @@ -1561,7 +1561,7 @@ private void addTraditionalPageOneAuthorTest(String path, List expectedO getClient(token).perform(patch("/api/submission/workspaceitems/" + publicationWorkspaceItem.getID()) .content(patchBody) - .contentType(javax.ws.rs.core.MediaType.APPLICATION_JSON_PATCH_JSON)) + .contentType(jakarta.ws.rs.core.MediaType.APPLICATION_JSON_PATCH_JSON)) .andExpect(status().isOk()); String authorField = "dc.contributor.author"; @@ -1595,7 +1595,7 @@ private void removeTraditionalPageOneAuthorTest(int path, List expectedO getClient(token).perform(patch("/api/submission/workspaceitems/" + publicationWorkspaceItem.getID()) .content(patchBody) - .contentType(javax.ws.rs.core.MediaType.APPLICATION_JSON_PATCH_JSON)) + .contentType(jakarta.ws.rs.core.MediaType.APPLICATION_JSON_PATCH_JSON)) .andExpect(status().isOk()); String authorField = "dc.contributor.author"; @@ -1638,7 +1638,7 @@ private void patchAddEntireArray(List metadataValues) throws Exce getClient(token).perform(patch("/api/submission/workspaceitems/" + publicationWorkspaceItem.getID()) .content(patchBody) - .contentType(javax.ws.rs.core.MediaType.APPLICATION_JSON_PATCH_JSON)) + .contentType(jakarta.ws.rs.core.MediaType.APPLICATION_JSON_PATCH_JSON)) .andExpect(status().isOk()); final String authorField = "dc.contributor.author"; diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/QAEventRestRepositoryIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/QAEventRestRepositoryIT.java index 5cecff6ef493..e5bdff533024 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/QAEventRestRepositoryIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/QAEventRestRepositoryIT.java @@ -33,9 +33,9 @@ import java.util.List; import java.util.UUID; import java.util.concurrent.atomic.AtomicReference; -import javax.ws.rs.core.MediaType; import com.fasterxml.jackson.databind.ObjectMapper; +import jakarta.ws.rs.core.MediaType; import org.dspace.app.ldn.NotifyServiceEntity; import org.dspace.app.rest.matcher.ItemMatcher; import org.dspace.app.rest.matcher.MetadataMatcher; @@ -865,8 +865,8 @@ public void recordDecisionNotifyTest() throws Exception { .withEntityType("Project").build(); Item item = ItemBuilder.createItem(context, colFunding).withTitle("Tracking Papyrus and Parchment Paths") .build(); - NotifyServiceEntity notifyServiceEntity = NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name") + NotifyServiceEntity notifyServiceEntity = + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name") .withDescription("service description") .withUrl("https://review-service.com/inbox/about/") .withLdnUrl("https://review-service.com/inbox/") diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/RegistrationRestRepositoryIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/RegistrationRestRepositoryIT.java index 4ba01e72fdf7..bc071f879669 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/RegistrationRestRepositoryIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/RegistrationRestRepositoryIT.java @@ -35,9 +35,9 @@ import java.sql.SQLException; import java.util.Iterator; import java.util.List; -import javax.servlet.http.HttpServletResponse; import com.fasterxml.jackson.databind.ObjectMapper; +import jakarta.servlet.http.HttpServletResponse; import org.apache.commons.lang3.StringUtils; import org.dspace.app.rest.matcher.RegistrationMatcher; import org.dspace.app.rest.model.RegistrationRest; diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/RelationshipDeleteRestRepositoryIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/RelationshipDeleteRestRepositoryIT.java index 2c6b14aa7e33..63808f8f1c62 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/RelationshipDeleteRestRepositoryIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/RelationshipDeleteRestRepositoryIT.java @@ -7,7 +7,6 @@ */ package org.dspace.app.rest; -import static java.util.Arrays.asList; import static java.util.stream.Collectors.toList; import static org.dspace.content.Item.ANY; import static org.hamcrest.CoreMatchers.equalTo; @@ -236,7 +235,7 @@ private void initPersonProjectPublication() throws Exception { projectItem = itemService.find(context, projectItem.getID()); List projectAuthorList = - itemService.getMetadata(projectItem, "dc", "contributor", "author", Item.ANY); + itemService.getMetadata(projectItem, "project", "investigator", Item.ANY, Item.ANY); assertThat(projectAuthorList.size(), equalTo(1)); assertThat(projectAuthorList.get(0).getValue(), equalTo("Smith, Donald")); assertThat(projectAuthorList.get(0).getAuthority(), startsWith("virtual::")); @@ -522,31 +521,49 @@ public void testDeleteJournalRelationshipCopyToBothItems() throws Exception { public void deleteItemCopyVirtualMetadataAll() throws Exception { initPersonProjectPublication(); - for (Item item : asList(publicationItem, projectItem)) { - - // Verify the dc.contributor.author virtual metadata - assertEquals( - 1, - itemService.getMetadata(item, "dc", "contributor", "author", ANY).size() - ); - - // Verify there's no dc.contributor.author actual metadata on the item - assertEquals( - 0, - item.getMetadata().stream() - .filter(metadataValue -> "author".equals(metadataValue.getMetadataField().getQualifier())) - .collect(toList()).size() - ); - - // Verify there's no relation.isAuthorOfPublication actual metadata on the item - assertEquals( - 0, - item.getMetadata().stream() - .filter(metadataValue -> "isAuthorOfPublication" - .equals(metadataValue.getMetadataField().getElement())) - .collect(toList()).size() - ); - } + // -- Initial checks for PublicationItem -- + // Verify the dc.contributor.author virtual metadata + assertEquals( + 1, + itemService.getMetadata(publicationItem, "dc", "contributor", "author", ANY).size() + ); + // Verify there's no dc.contributor.author actual metadata on the item + assertEquals( + 0, + publicationItem.getMetadata().stream() + .filter(metadataValue -> "author".equals(metadataValue.getMetadataField().getQualifier())) + .collect(toList()).size() + ); + // Verify there's no relation.isAuthorOfPublication actual metadata on the item + assertEquals( + 0, + publicationItem.getMetadata().stream() + .filter(metadataValue -> "isAuthorOfPublication" + .equals(metadataValue.getMetadataField().getElement())) + .collect(toList()).size() + ); + + // -- Initial checks For ProjectItem -- + // Verify the project.investigator virtual metadata + assertEquals( + 1, + itemService.getMetadata(projectItem, "project", "investigator", ANY, ANY).size() + ); + // Verify there's no project.investigator actual metadata on the item + assertEquals( + 0, + projectItem.getMetadata().stream() + .filter(metadataValue -> "investigator".equals(metadataValue.getMetadataField().getElement())) + .collect(toList()).size() + ); + // Verify there's no relation.isPersonOfProject actual metadata on the item + assertEquals( + 0, + projectItem.getMetadata().stream() + .filter(metadataValue -> "isPersonOfProject" + .equals(metadataValue.getMetadataField().getElement())) + .collect(toList()).size() + ); getClient(adminAuthToken).perform( delete("/api/core/items/" + personItem.getID() + "?copyVirtualMetadata=all")) @@ -583,7 +600,7 @@ public void deleteItemCopyVirtualMetadataAll() throws Exception { projectItem = itemService.find(context, projectItem.getID()); List projectAuthorList = itemService.getMetadata(projectItem, - "dc", "contributor", "author", Item.ANY); + "project", "investigator", Item.ANY, Item.ANY); assertThat(projectAuthorList.size(), equalTo(1)); assertThat(projectAuthorList.get(0).getValue(), equalTo("Smith, Donald")); assertNull(projectAuthorList.get(0).getAuthority()); @@ -591,11 +608,11 @@ public void deleteItemCopyVirtualMetadataAll() throws Exception { "relation", "isPersonOfProject", Item.ANY, Item.ANY); assertThat(projectRelationships.size(), equalTo(1)); - // Verify there's dc.contributor.author actual metadata on the project item + // Verify there's project.investigator actual metadata on the project item assertEquals( 1, projectItem.getMetadata().stream() - .filter(metadataValue -> "author".equals(metadataValue.getMetadataField().getQualifier())) + .filter(metadataValue -> "investigator".equals(metadataValue.getMetadataField().getElement())) .collect(toList()) .size() ); @@ -615,31 +632,49 @@ public void deleteItemCopyVirtualMetadataAll() throws Exception { public void deleteItemCopyVirtualMetadataOneType() throws Exception { initPersonProjectPublication(); - for (Item item : asList(publicationItem, projectItem)) { - - // Verify the dc.contributor.author virtual metadata - assertEquals( - 1, - itemService.getMetadata(item, "dc", "contributor", "author", ANY).size() - ); - - // Verify there's no dc.contributor.author actual metadata on the item - assertEquals( - 0, - item.getMetadata().stream() - .filter(metadataValue -> "author".equals(metadataValue.getMetadataField().getQualifier())) - .collect(toList()).size() - ); - - // Verify there's no relation.isAuthorOfPublication actual metadata on the item - assertEquals( - 0, - item.getMetadata().stream() - .filter(metadataValue -> "isAuthorOfPublication" - .equals(metadataValue.getMetadataField().getElement())) - .collect(toList()).size() - ); - } + // -- Initial checks for PublicationItem -- + // Verify the dc.contributor.author virtual metadata + assertEquals( + 1, + itemService.getMetadata(publicationItem, "dc", "contributor", "author", ANY).size() + ); + // Verify there's no dc.contributor.author actual metadata on the item + assertEquals( + 0, + publicationItem.getMetadata().stream() + .filter(metadataValue -> "author".equals(metadataValue.getMetadataField().getQualifier())) + .collect(toList()).size() + ); + // Verify there's no relation.isAuthorOfPublication actual metadata on the item + assertEquals( + 0, + publicationItem.getMetadata().stream() + .filter(metadataValue -> "isAuthorOfPublication" + .equals(metadataValue.getMetadataField().getElement())) + .collect(toList()).size() + ); + + // -- Initial checks For ProjectItem -- + // Verify the project.investigator virtual metadata + assertEquals( + 1, + itemService.getMetadata(projectItem, "project", "investigator", ANY, ANY).size() + ); + // Verify there's no project.investigator actual metadata on the item + assertEquals( + 0, + projectItem.getMetadata().stream() + .filter(metadataValue -> "investigator".equals(metadataValue.getMetadataField().getElement())) + .collect(toList()).size() + ); + // Verify there's no relation.isPersonOfProject actual metadata on the item + assertEquals( + 0, + projectItem.getMetadata().stream() + .filter(metadataValue -> "isPersonOfProject" + .equals(metadataValue.getMetadataField().getElement())) + .collect(toList()).size() + ); getClient(adminAuthToken).perform( delete("/api/core/items/" + personItem.getID() + "?copyVirtualMetadata=" @@ -677,7 +712,7 @@ public void deleteItemCopyVirtualMetadataOneType() throws Exception { projectItem = itemService.find(context, projectItem.getID()); List projectAuthorList = itemService.getMetadata(projectItem, - "dc", "contributor", "author", Item.ANY); + "project", "investigator", Item.ANY, Item.ANY); assertThat(projectAuthorList.size(), equalTo(0)); List projectRelationships = itemService.getMetadata(projectItem, "relation", "isPersonOfProject", Item.ANY, Item.ANY); @@ -688,31 +723,49 @@ public void deleteItemCopyVirtualMetadataOneType() throws Exception { public void deleteItemCopyVirtualMetadataTwoTypes() throws Exception { initPersonProjectPublication(); - for (Item item : asList(publicationItem, projectItem)) { - - // Verify the dc.contributor.author virtual metadata - assertEquals( - 1, - itemService.getMetadata(item, "dc", "contributor", "author", ANY).size() - ); - - // Verify there's no dc.contributor.author actual metadata on the item - assertEquals( - 0, - item.getMetadata().stream() - .filter(metadataValue -> "author".equals(metadataValue.getMetadataField().getQualifier())) - .collect(toList()).size() - ); - - // Verify there's no relation.isAuthorOfPublication actual metadata on the item - assertEquals( - 0, - item.getMetadata().stream() - .filter(metadataValue -> "isAuthorOfPublication" - .equals(metadataValue.getMetadataField().getElement())) - .collect(toList()).size() - ); - } + // -- Initial checks for PublicationItem -- + // Verify the dc.contributor.author virtual metadata + assertEquals( + 1, + itemService.getMetadata(publicationItem, "dc", "contributor", "author", ANY).size() + ); + // Verify there's no dc.contributor.author actual metadata on the item + assertEquals( + 0, + publicationItem.getMetadata().stream() + .filter(metadataValue -> "author".equals(metadataValue.getMetadataField().getQualifier())) + .collect(toList()).size() + ); + // Verify there's no relation.isAuthorOfPublication actual metadata on the item + assertEquals( + 0, + publicationItem.getMetadata().stream() + .filter(metadataValue -> "isAuthorOfPublication" + .equals(metadataValue.getMetadataField().getElement())) + .collect(toList()).size() + ); + + // -- Initial checks For ProjectItem -- + // Verify the project.investigator virtual metadata + assertEquals( + 1, + itemService.getMetadata(projectItem, "project", "investigator", ANY, ANY).size() + ); + // Verify there's no project.investigator actual metadata on the item + assertEquals( + 0, + projectItem.getMetadata().stream() + .filter(metadataValue -> "investigator".equals(metadataValue.getMetadataField().getElement())) + .collect(toList()).size() + ); + // Verify there's no relation.isPersonOfProject actual metadata on the item + assertEquals( + 0, + projectItem.getMetadata().stream() + .filter(metadataValue -> "isPersonOfProject" + .equals(metadataValue.getMetadataField().getElement())) + .collect(toList()).size() + ); getClient(adminAuthToken).perform( delete("/api/core/items/" + personItem.getID() @@ -751,7 +804,7 @@ public void deleteItemCopyVirtualMetadataTwoTypes() throws Exception { projectItem = itemService.find(context, projectItem.getID()); List projectAuthorList = itemService.getMetadata(projectItem, - "dc", "contributor", "author", Item.ANY); + "project", "investigator", Item.ANY, Item.ANY); assertThat(projectAuthorList.size(), equalTo(1)); assertThat(projectAuthorList.get(0).getValue(), equalTo("Smith, Donald")); assertNull(projectAuthorList.get(0).getAuthority()); @@ -759,11 +812,11 @@ public void deleteItemCopyVirtualMetadataTwoTypes() throws Exception { "relation", "isPersonOfProject", Item.ANY, Item.ANY); assertThat(projectRelationships.size(), equalTo(1)); - // Verify there's dc.contributor.author actual metadata on the project item + // Verify there's project.investigator actual metadata on the project item assertEquals( 1, projectItem.getMetadata().stream() - .filter(metadataValue -> "author".equals(metadataValue.getMetadataField().getQualifier())) + .filter(metadataValue -> "investigator".equals(metadataValue.getMetadataField().getElement())) .collect(toList()) .size() ); @@ -827,7 +880,7 @@ public void deleteItemCopyVirtualMetadataInvalid() throws Exception { projectItem = itemService.find(context, projectItem.getID()); List projectAuthorList = - itemService.getMetadata(projectItem, "dc", "contributor", "author", Item.ANY); + itemService.getMetadata(projectItem, "project", "investigator", Item.ANY, Item.ANY); assertThat(projectAuthorList.size(), equalTo(1)); assertThat(projectAuthorList.get(0).getValue(), equalTo("Smith, Donald")); assertThat(projectAuthorList.get(0).getAuthority(), startsWith("virtual::")); @@ -840,31 +893,49 @@ public void deleteItemCopyVirtualMetadataInvalid() throws Exception { public void deleteItemCopyVirtualMetadataAllNoPermissions() throws Exception { initPersonProjectPublication(); - for (Item item : asList(publicationItem, projectItem)) { - - // Verify the dc.contributor.author virtual metadata - assertEquals( - 1, - itemService.getMetadata(item, "dc", "contributor", "author", ANY).size() - ); - - // Verify there's no dc.contributor.author actual metadata on the item - assertEquals( - 0, - item.getMetadata().stream() - .filter(metadataValue -> "author".equals(metadataValue.getMetadataField().getQualifier())) - .collect(toList()).size() - ); - - // Verify there's no relation.isAuthorOfPublication actual metadata on the item - assertEquals( - 0, - item.getMetadata().stream() - .filter(metadataValue -> "isAuthorOfPublication" - .equals(metadataValue.getMetadataField().getElement())) - .collect(toList()).size() - ); - } + // -- Initial checks for PublicationItem -- + // Verify the dc.contributor.author virtual metadata + assertEquals( + 1, + itemService.getMetadata(publicationItem, "dc", "contributor", "author", ANY).size() + ); + // Verify there's no dc.contributor.author actual metadata on the item + assertEquals( + 0, + publicationItem.getMetadata().stream() + .filter(metadataValue -> "author".equals(metadataValue.getMetadataField().getQualifier())) + .collect(toList()).size() + ); + // Verify there's no relation.isAuthorOfPublication actual metadata on the item + assertEquals( + 0, + publicationItem.getMetadata().stream() + .filter(metadataValue -> "isAuthorOfPublication" + .equals(metadataValue.getMetadataField().getElement())) + .collect(toList()).size() + ); + + // -- Initial checks For ProjectItem -- + // Verify the project.investigator virtual metadata + assertEquals( + 1, + itemService.getMetadata(projectItem, "project", "investigator", ANY, ANY).size() + ); + // Verify there's no project.investigator actual metadata on the item + assertEquals( + 0, + projectItem.getMetadata().stream() + .filter(metadataValue -> "investigator".equals(metadataValue.getMetadataField().getElement())) + .collect(toList()).size() + ); + // Verify there's no relation.isPersonOfProject actual metadata on the item + assertEquals( + 0, + projectItem.getMetadata().stream() + .filter(metadataValue -> "isPersonOfProject" + .equals(metadataValue.getMetadataField().getElement())) + .collect(toList()).size() + ); getClient(getAuthToken(eperson.getEmail(), password)).perform( delete("/api/core/items/" + personItem.getID())) @@ -882,7 +953,7 @@ public void deleteItemCopyVirtualMetadataAllNoPermissions() throws Exception { projectItem = itemService.find(context, projectItem.getID()); List projectAuthorList = - itemService.getMetadata(projectItem, "dc", "contributor", "author", Item.ANY); + itemService.getMetadata(projectItem, "project", "investigator", Item.ANY, Item.ANY); assertThat(projectAuthorList.size(), equalTo(1)); assertThat(projectAuthorList.get(0).getValue(), equalTo("Smith, Donald")); assertThat(projectAuthorList.get(0).getAuthority(), startsWith("virtual::")); @@ -995,7 +1066,7 @@ public void deleteItemCopyVirtualMetadataAllInsufficientPermissions() throws Exc projectItem = itemService.find(context, projectItem.getID()); List projectAuthorList = - itemService.getMetadata(projectItem, "dc", "contributor", "author", Item.ANY); + itemService.getMetadata(projectItem, "project", "investigator", Item.ANY, Item.ANY); assertThat(projectAuthorList.size(), equalTo(1)); assertThat(projectAuthorList.get(0).getValue(), equalTo("Smith, Donald")); assertThat(projectAuthorList.get(0).getAuthority(), startsWith("virtual::")); @@ -1027,7 +1098,7 @@ public void deleteItemCopyVirtualMetadataTypeInsufficientPermissions() throws Ex projectItem = itemService.find(context, projectItem.getID()); List projectAuthorList = - itemService.getMetadata(projectItem, "dc", "contributor", "author", Item.ANY); + itemService.getMetadata(projectItem, "project", "investigator", Item.ANY, Item.ANY); assertThat(projectAuthorList.size(), equalTo(1)); assertThat(projectAuthorList.get(0).getValue(), equalTo("Smith, Donald")); assertThat(projectAuthorList.get(0).getAuthority(), startsWith("virtual::")); @@ -1040,31 +1111,49 @@ public void deleteItemCopyVirtualMetadataTypeInsufficientPermissions() throws Ex public void deleteItemCopyVirtualMetadataConfigured() throws Exception { initPersonProjectPublication(); - for (Item item : asList(publicationItem, projectItem)) { - - // Verify the dc.contributor.author virtual metadata - assertEquals( - 1, - itemService.getMetadata(item, "dc", "contributor", "author", ANY).size() - ); - - // Verify there's no dc.contributor.author actual metadata on the item - assertEquals( - 0, - item.getMetadata().stream() - .filter(metadataValue -> "author".equals(metadataValue.getMetadataField().getQualifier())) - .collect(toList()).size() - ); - - // Verify there's no relation.isAuthorOfPublication actual metadata on the item - assertEquals( - 0, - item.getMetadata().stream() - .filter(metadataValue -> "isAuthorOfPublication" - .equals(metadataValue.getMetadataField().getElement())) - .collect(toList()).size() - ); - } + // -- Initial checks for PublicationItem -- + // Verify the dc.contributor.author virtual metadata + assertEquals( + 1, + itemService.getMetadata(publicationItem, "dc", "contributor", "author", ANY).size() + ); + // Verify there's no dc.contributor.author actual metadata on the item + assertEquals( + 0, + publicationItem.getMetadata().stream() + .filter(metadataValue -> "author".equals(metadataValue.getMetadataField().getQualifier())) + .collect(toList()).size() + ); + // Verify there's no relation.isAuthorOfPublication actual metadata on the item + assertEquals( + 0, + publicationItem.getMetadata().stream() + .filter(metadataValue -> "isAuthorOfPublication" + .equals(metadataValue.getMetadataField().getElement())) + .collect(toList()).size() + ); + + // -- Initial checks For ProjectItem -- + // Verify the project.investigator virtual metadata + assertEquals( + 1, + itemService.getMetadata(projectItem, "project", "investigator", ANY, ANY).size() + ); + // Verify there's no project.investigator actual metadata on the item + assertEquals( + 0, + projectItem.getMetadata().stream() + .filter(metadataValue -> "investigator".equals(metadataValue.getMetadataField().getElement())) + .collect(toList()).size() + ); + // Verify there's no relation.isPersonOfProject actual metadata on the item + assertEquals( + 0, + projectItem.getMetadata().stream() + .filter(metadataValue -> "isPersonOfProject" + .equals(metadataValue.getMetadataField().getElement())) + .collect(toList()).size() + ); getClient(adminAuthToken).perform( delete("/api/core/items/" + personItem.getID() + "?copyVirtualMetadata=configured")) @@ -1081,7 +1170,7 @@ public void deleteItemCopyVirtualMetadataConfigured() throws Exception { projectItem = itemService.find(context, projectItem.getID()); List projectAuthorList = itemService.getMetadata(projectItem, - "dc", "contributor", "author", Item.ANY); + "project", "investigator", Item.ANY, Item.ANY); assertThat(projectAuthorList.size(), equalTo(1)); assertThat(projectAuthorList.get(0).getValue(), equalTo("Smith, Donald")); assertNull(projectAuthorList.get(0).getAuthority()); @@ -1089,11 +1178,11 @@ public void deleteItemCopyVirtualMetadataConfigured() throws Exception { "relation", "isPersonOfProject", Item.ANY, Item.ANY); assertThat(projectRelationships.size(), equalTo(1)); - // Verify there's dc.contributor.author actual metadata on the project item + // Verify there's project.investigator actual metadata on the project item assertEquals( 1, projectItem.getMetadata().stream() - .filter(metadataValue -> "author".equals(metadataValue.getMetadataField().getQualifier())) + .filter(metadataValue -> "investigator".equals(metadataValue.getMetadataField().getElement())) .collect(toList()) .size() ); diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/RelationshipRestRepositoryIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/RelationshipRestRepositoryIT.java index 8cb1fe6e32da..188b9f606c85 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/RelationshipRestRepositoryIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/RelationshipRestRepositoryIT.java @@ -176,7 +176,6 @@ public void setUp() throws Exception { .withAuthor("Smith, Maria") .withPersonIdentifierLastName("Smith") .withPersonIdentifierFirstName("Maria") - .withMetadata("dspace", "entity", "type", "Person") .build(); author3 = ItemBuilder.createItem(context, col1) @@ -2330,6 +2329,77 @@ public void findRelationshipByLabelTest() throws Exception { ; } + @Test + public void findRelationshipByLabelWithRelatedEntityTypeTest() throws Exception { + context.turnOffAuthorisationSystem(); + RelationshipType isAuthorOfPublicationRelationshipTypePublication = relationshipTypeService + .findbyTypesAndTypeName(context, entityTypeService.findByEntityType(context, "Publication"), + entityTypeService.findByEntityType(context, "Person"), + "isAuthorOfPublication", "isPublicationOfAuthor"); + RelationshipType isAuthorOfPublicationRelationshipTypeOrgUnit = relationshipTypeService + .findbyTypesAndTypeName(context, entityTypeService.findByEntityType(context, "Publication"), + entityTypeService.findByEntityType(context, "OrgUnit"), + "isAuthorOfPublication", "isPublicationOfAuthor"); + + // We're creating a Relationship of type isAuthorOfPublication between a Publication and a Person + Relationship relationship1 = RelationshipBuilder + .createRelationshipBuilder(context, publication1, author1, isAuthorOfPublicationRelationshipTypePublication) + .build(); + + // We're creating a Relationship of type isAuthorOfPublication between a Publication and an OrgUnit + Relationship relationship2 = RelationshipBuilder + .createRelationshipBuilder(context, publication1, orgUnit1, isAuthorOfPublicationRelationshipTypeOrgUnit) + .build(); + context.restoreAuthSystemState(); + + // Perform a GET request to the searchByLabel endpoint, asking for Relationships of type isAuthorOfPublication + // With an extra parameter namely DSO which resolves to the publication used by both relationships. + // Both relationships should be returned if we don't specify the DSO's related entity type + getClient().perform(get("/api/core/relationships/search/byLabel") + .param("label", "isAuthorOfPublication") + .param("dso", publication1.getID().toString()) + .param("projection", "full")) + .andExpect(status().isOk()) + .andExpect(jsonPath("$.page", is(PageMatcher.pageEntryWithTotalPagesAndElements(0, 20, 1, 2)))) + .andExpect(jsonPath("$._embedded.relationships", containsInAnyOrder( + RelationshipMatcher.matchRelationship(relationship1), + RelationshipMatcher.matchRelationship(relationship2) + ))) + ; + + // Perform a GET request to the searchByLabel endpoint, asking for Relationships of type isAuthorOfPublication + // With an extra parameter namely DSO which resolves to the publication used by both relationships. + // Only the Person relationship should be returned if we specify the DSO's related entity type + getClient().perform(get("/api/core/relationships/search/byLabel") + .param("label", "isAuthorOfPublication") + .param("dso", publication1.getID().toString()) + .param("relatedEntityType", "Person") + .param("projection", "full")) + + .andExpect(status().isOk()) + .andExpect(jsonPath("$.page", is(PageMatcher.pageEntryWithTotalPagesAndElements(0, 20, 1, 1)))) + .andExpect(jsonPath("$._embedded.relationships", containsInAnyOrder( + RelationshipMatcher.matchRelationship(relationship1) + ))) + ; + + // Perform a GET request to the searchByLabel endpoint, asking for Relationships of type isAuthorOfPublication + // With an extra parameter namely DSO which resolves to the publication used by both relationships. + // Only the OrgUnit relationship should be returned if we specify the DSO's related entity type + getClient().perform(get("/api/core/relationships/search/byLabel") + .param("label", "isAuthorOfPublication") + .param("dso", publication1.getID().toString()) + .param("relatedEntityType", "OrgUnit") + .param("projection", "full")) + + .andExpect(status().isOk()) + .andExpect(jsonPath("$.page", is(PageMatcher.pageEntryWithTotalPagesAndElements(0, 20, 1, 1)))) + .andExpect(jsonPath("$._embedded.relationships", containsInAnyOrder( + RelationshipMatcher.matchRelationship(relationship2) + ))) + ; + } + @Test public void putRelationshipWithNonexistentID() throws Exception { context.turnOffAuthorisationSystem(); @@ -2639,7 +2709,7 @@ public void putRelationshipWithJsonMoveInFrontOtherMetadata() throws Exception { getClient(token).perform(patch("/api/core/items/" + publication1.getID()) .content(getPatchContent(ops)) - .contentType(javax.ws.rs.core.MediaType.APPLICATION_JSON_PATCH_JSON)); + .contentType(jakarta.ws.rs.core.MediaType.APPLICATION_JSON_PATCH_JSON)); // Add another relationship mvcResult = getClient(token) diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/RequestItemRepositoryIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/RequestItemRepositoryIT.java index cbaca4707b13..e3e1b6035c88 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/RequestItemRepositoryIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/RequestItemRepositoryIT.java @@ -15,7 +15,6 @@ import static org.junit.Assert.assertEquals; import static org.junit.Assert.assertNotNull; import static org.junit.Assert.assertTrue; -import static org.springframework.security.test.web.servlet.request.SecurityMockMvcRequestPostProcessors.csrf; import static org.springframework.test.web.servlet.request.MockMvcRequestBuilders.delete; import static org.springframework.test.web.servlet.request.MockMvcRequestBuilders.get; import static org.springframework.test.web.servlet.request.MockMvcRequestBuilders.post; @@ -36,10 +35,10 @@ import java.util.Map; import java.util.UUID; import java.util.concurrent.atomic.AtomicReference; -import javax.servlet.http.Cookie; import com.fasterxml.jackson.databind.ObjectMapper; import com.fasterxml.jackson.databind.ObjectWriter; +import jakarta.servlet.http.Cookie; import org.dspace.app.requestitem.RequestItem; import org.dspace.app.requestitem.service.RequestItemService; import org.dspace.app.rest.converter.RequestItemConverter; @@ -127,8 +126,6 @@ public void init() @Test public void testFindAll() throws Exception { - System.out.println("findAll"); - getClient().perform(get(URI_ROOT)) .andExpect(status().isMethodNotAllowed()); } @@ -141,8 +138,6 @@ public void testFindAll() @Test public void testFindOneAuthenticated() throws Exception { - System.out.println("findOne (authenticated)"); - // Create a request. RequestItem request = RequestItemBuilder .createRequestItem(context, item, bitstream) @@ -166,8 +161,6 @@ public void testFindOneAuthenticated() @Test public void testFindOneNotAuthenticated() throws Exception { - System.out.println("findOne (not authenticated)"); - // Create a request. RequestItem request = RequestItemBuilder .createRequestItem(context, item, bitstream) @@ -190,8 +183,6 @@ public void testFindOneNotAuthenticated() @Test public void testFindOneNonexistent() throws Exception { - System.out.println("findOne (nonexistent request)"); - String uri = URI_ROOT + "/impossible"; getClient().perform(get(uri)) .andExpect(status().isNotFound()); @@ -207,8 +198,6 @@ public void testFindOneNonexistent() @Test public void testCreateAndReturnAuthenticated() throws SQLException, AuthorizeException, IOException, Exception { - System.out.println("createAndReturn (authenticated)"); - // Fake up a request in REST form. RequestItemRest rir = new RequestItemRest(); rir.setAllfiles(true); @@ -390,7 +379,6 @@ public void testCreateAndReturnBadRequest() @Test public void testCreateWithInvalidCSRF() throws Exception { - System.out.println("testCreateWithInvalidCSRF"); // Login via password to retrieve a valid token String token = getAuthToken(eperson.getEmail(), password); @@ -416,7 +404,7 @@ public void testCreateWithInvalidCSRF() getClient().perform(post(URI_ROOT) .content(mapper.writeValueAsBytes(rir)) .contentType(contentType) - .with(csrf().useInvalidToken().asHeader()) + .with(invalidCsrfToken()) .secure(true) .cookie(cookies)) // Should return a 403 Forbidden, for an invalid CSRF token @@ -550,8 +538,6 @@ public void testPutUnauthenticated() @Test public void testPutBadRequest() throws Exception { - System.out.println("put bad requests"); - // Create an item request to approve. RequestItem itemRequest = RequestItemBuilder .createRequestItem(context, item, bitstream) @@ -578,7 +564,6 @@ public void testPutBadRequest() @Test public void testPutCompletedRequest() throws Exception { - System.out.println("put completed request"); // Create an item request that is already denied. RequestItem itemRequest = RequestItemBuilder @@ -606,7 +591,6 @@ public void testPutCompletedRequest() */ @Test public void testGetDomainClass() { - System.out.println("getDomainClass"); RequestItemRepository instance = new RequestItemRepository(); Class instanceClass = instance.getDomainClass(); assertEquals("Wrong domain class", RequestItemRest.class, instanceClass); diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/ResearcherProfileRestRepositoryIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/ResearcherProfileRestRepositoryIT.java index 53e6abeda208..9039f3aaabdc 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/ResearcherProfileRestRepositoryIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/ResearcherProfileRestRepositoryIT.java @@ -19,6 +19,7 @@ import static org.dspace.app.rest.matcher.MetadataMatcher.matchMetadataNotEmpty; import static org.dspace.app.rest.matcher.ResourcePolicyMatcher.matchResourcePolicyProperties; import static org.dspace.profile.OrcidEntitySyncPreference.ALL; +import static org.dspace.profile.OrcidEntitySyncPreference.DISABLED; import static org.dspace.profile.OrcidEntitySyncPreference.MINE; import static org.hamcrest.MatcherAssert.assertThat; import static org.hamcrest.Matchers.contains; @@ -2528,6 +2529,156 @@ public void testCloneFromExternalSourceMultipleUri() throws Exception { } + @Test + public void testOwnerPatchToDisconnectProfileFromOrcidWithSyncSettingsRemoved() throws Exception { + + configurationService.setProperty("orcid.disconnection.allowed-users", "only_owner"); + configurationService.setProperty("orcid.disconnection.remain-sync", "false"); + + context.turnOffAuthorisationSystem(); + + EPerson ePerson = EPersonBuilder.createEPerson(context) + .withCanLogin(true) + .withOrcid("0000-1111-2222-3333") + .withOrcidScope("/read") + .withOrcidScope("/write") + .withEmail("test@email.it") + .withPassword(password) + .withNameInMetadata("Test", "User") + .build(); + + OrcidTokenBuilder.create(context, ePerson, "3de2e370-8aa9-4bbe-8d7e-f5b1577bdad4").build(); + + Item profile = createProfile(ePerson); + + assertThat(getMetadataValues(profile, "person.identifier.orcid"), not(empty())); + assertThat(getMetadataValues(profile, "dspace.orcid.scope"), not(empty())); + assertThat(getMetadataValues(profile, "dspace.orcid.authenticated"), not(empty())); + assertThat(getOrcidAccessToken(profile), is("3de2e370-8aa9-4bbe-8d7e-f5b1577bdad4")); + + context.restoreAuthSystemState(); + + String authToken = getAuthToken(ePerson.getEmail(), password); + String ePersonId = ePerson.getID().toString(); + List operations = asList(new ReplaceOperation("/orcid/mode", "BATCH"), + new ReplaceOperation("/orcid/publications", "DISABLED"), + new ReplaceOperation("/orcid/fundings", "ALL"), + new ReplaceOperation("/orcid/profile", "BIOGRAPHICAL,IDENTIFIERS")); + + getClient(authToken).perform(patch("/api/eperson/profiles/{id}", ePersonId) + .content(getPatchContent(operations)) + .contentType(MediaType.APPLICATION_JSON_VALUE)) + .andExpect(status().isOk()) + .andExpect(jsonPath("$.orcidSynchronization.mode", is("BATCH"))) + .andExpect(jsonPath("$.orcidSynchronization.profilePreferences", + containsInAnyOrder("IDENTIFIERS", "BIOGRAPHICAL"))) + .andExpect(jsonPath("$.orcidSynchronization.fundingsPreference", is(ALL.name()))) + .andExpect(jsonPath("$.orcidSynchronization.publicationsPreference", is(DISABLED.name()))); + + profile = context.reloadEntity(profile); + List metadata = profile.getMetadata(); + assertThat(metadata, hasItem(with("dspace.orcid.sync-mode","BATCH"))); + assertThat(metadata, hasItem(with("dspace.orcid.sync-publications",DISABLED.name()))); + assertThat(metadata, hasItem(with("dspace.orcid.sync-fundings",ALL.name()))); + assertThat(getMetadataValues(profile, "dspace.orcid.sync-profile"), hasSize(2)); + + getClient(authToken).perform(patch("/api/eperson/profiles/{id}", ePersonId) + .content(getPatchContent(asList(new RemoveOperation("/orcid")))) + .contentType(MediaType.APPLICATION_JSON_VALUE)) + .andExpect(status().isOk()) + .andExpect(jsonPath("$.id", is(ePersonId))) + .andExpect(jsonPath("$.visible", is(false))) + .andExpect(jsonPath("$.type", is("profile"))) + .andExpect(jsonPath("$.orcid").doesNotExist()) + .andExpect(jsonPath("$.orcidSynchronization").doesNotExist()); + + profile = context.reloadEntity(profile); + + assertThat(getMetadataValues(profile, "person.identifier.orcid"), empty()); + assertThat(getMetadataValues(profile, "dspace.orcid.scope"), empty()); + assertThat(getMetadataValues(profile, "dspace.orcid.authenticated"), empty()); + assertThat(getMetadataValues(profile, "dspace.orcid.sync-profile"), empty()); + assertThat(getMetadataValues(profile, "dspace.orcid.sync-mode"), empty()); + assertThat(getMetadataValues(profile, "dspace.orcid.sync-fundings"), empty()); + assertThat(getMetadataValues(profile, "dspace.orcid.sync-publications"), empty()); + assertThat(getOrcidAccessToken(profile), nullValue()); + } + + @Test + public void testOwnerPatchToDisconnectProfileFromOrcidWithSyncSettingsRemain() throws Exception { + + configurationService.setProperty("orcid.disconnection.allowed-users", "only_owner"); + + context.turnOffAuthorisationSystem(); + + EPerson ePerson = EPersonBuilder.createEPerson(context) + .withCanLogin(true) + .withOrcid("0000-1111-2222-3333") + .withOrcidScope("/read") + .withOrcidScope("/write") + .withEmail("test@email.it") + .withPassword(password) + .withNameInMetadata("Test", "User") + .build(); + + OrcidTokenBuilder.create(context, ePerson, "3de2e370-8aa9-4bbe-8d7e-f5b1577bdad4").build(); + + Item profile = createProfile(ePerson); + + assertThat(getMetadataValues(profile, "person.identifier.orcid"), not(empty())); + assertThat(getMetadataValues(profile, "dspace.orcid.scope"), not(empty())); + assertThat(getMetadataValues(profile, "dspace.orcid.authenticated"), not(empty())); + assertThat(getOrcidAccessToken(profile), is("3de2e370-8aa9-4bbe-8d7e-f5b1577bdad4")); + + context.restoreAuthSystemState(); + + String authToken = getAuthToken(ePerson.getEmail(), password); + String ePersonId = ePerson.getID().toString(); + List operations = asList(new ReplaceOperation("/orcid/mode", "BATCH"), + new ReplaceOperation("/orcid/publications", "DISABLED"), + new ReplaceOperation("/orcid/fundings", "ALL"), + new ReplaceOperation("/orcid/profile", "BIOGRAPHICAL,IDENTIFIERS")); + + getClient(authToken).perform(patch("/api/eperson/profiles/{id}", ePersonId) + .content(getPatchContent(operations)) + .contentType(MediaType.APPLICATION_JSON_VALUE)) + .andExpect(status().isOk()) + .andExpect(jsonPath("$.orcidSynchronization.mode", is("BATCH"))) + .andExpect(jsonPath("$.orcidSynchronization.profilePreferences", + containsInAnyOrder("IDENTIFIERS", "BIOGRAPHICAL"))) + .andExpect(jsonPath("$.orcidSynchronization.fundingsPreference", is(ALL.name()))) + .andExpect(jsonPath("$.orcidSynchronization.publicationsPreference", is(DISABLED.name()))); + + profile = context.reloadEntity(profile); + List metadata = profile.getMetadata(); + assertThat(metadata, hasItem(with("dspace.orcid.sync-mode","BATCH"))); + assertThat(metadata, hasItem(with("dspace.orcid.sync-publications",DISABLED.name()))); + assertThat(metadata, hasItem(with("dspace.orcid.sync-fundings",ALL.name()))); + assertThat(getMetadataValues(profile, "dspace.orcid.sync-profile"), hasSize(2)); + + getClient(authToken).perform(patch("/api/eperson/profiles/{id}", ePersonId) + .content(getPatchContent(asList(new RemoveOperation("/orcid")))) + .contentType(MediaType.APPLICATION_JSON_VALUE)) + .andExpect(status().isOk()) + .andExpect(jsonPath("$.id", is(ePersonId))) + .andExpect(jsonPath("$.visible", is(false))) + .andExpect(jsonPath("$.type", is("profile"))) + .andExpect(jsonPath("$.orcid").doesNotExist()) + .andExpect(jsonPath("$.orcidSynchronization").doesNotExist()); + + profile = context.reloadEntity(profile); + + assertThat(getMetadataValues(profile, "person.identifier.orcid"), empty()); + assertThat(getMetadataValues(profile, "dspace.orcid.scope"), empty()); + assertThat(getMetadataValues(profile, "dspace.orcid.authenticated"), empty()); + assertThat(metadata, hasItem(with("dspace.orcid.sync-mode","BATCH"))); + assertThat(metadata, hasItem(with("dspace.orcid.sync-publications",DISABLED.name()))); + assertThat(metadata, hasItem(with("dspace.orcid.sync-fundings",ALL.name()))); + assertThat(getMetadataValues(profile, "dspace.orcid.sync-profile"), hasSize(2)); + assertThat(getOrcidAccessToken(profile), nullValue()); + } + + @Test public void testCloneFromExternalProfileAlreadyAssociated() throws Exception { diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/ResourcePolicyRestRepositoryIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/ResourcePolicyRestRepositoryIT.java index 02834607113d..bc6f142abebb 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/ResourcePolicyRestRepositoryIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/ResourcePolicyRestRepositoryIT.java @@ -29,9 +29,9 @@ import java.util.List; import java.util.UUID; import java.util.concurrent.atomic.AtomicReference; -import javax.ws.rs.core.MediaType; import com.fasterxml.jackson.databind.ObjectMapper; +import jakarta.ws.rs.core.MediaType; import org.apache.commons.lang3.StringUtils; import org.dspace.app.rest.matcher.ResourcePolicyMatcher; import org.dspace.app.rest.model.ResourcePolicyRest; @@ -80,8 +80,10 @@ public void findAllTest() throws Exception { context.turnOffAuthorisationSystem(); Community community = CommunityBuilder.createCommunity(context).withName("My community").build(); - ResourcePolicyBuilder.createResourcePolicy(context).withDspaceObject(community).withAction(Constants.READ) - .withUser(admin).build(); + ResourcePolicyBuilder.createResourcePolicy(context, admin, null) + .withDspaceObject(community) + .withAction(Constants.READ) + .build(); context.restoreAuthSystemState(); String authToken = getAuthToken(admin.getEmail(), password); @@ -94,8 +96,10 @@ public void findAllUnAuthenticatedTest() throws Exception { context.turnOffAuthorisationSystem(); Community community = CommunityBuilder.createCommunity(context).withName("My community").build(); - ResourcePolicyBuilder.createResourcePolicy(context).withDspaceObject(community).withAction(Constants.READ) - .withUser(admin).build(); + ResourcePolicyBuilder.createResourcePolicy(context, admin, null) + .withDspaceObject(community) + .withAction(Constants.READ) + .build(); context.restoreAuthSystemState(); getClient().perform(get("/api/authz/resourcepolicies")).andExpect(status().isUnauthorized()); @@ -112,10 +116,9 @@ public void findOneTest() throws Exception { Community community = CommunityBuilder.createCommunity(context).withName("My community").build(); - ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context, eperson1, null) .withDspaceObject(community) .withAction(Constants.READ) - .withUser(eperson1) .build(); context.restoreAuthSystemState(); @@ -144,10 +147,9 @@ public void findOneResourcePolicyOfAnonymousGroupTest() throws Exception { Community community = CommunityBuilder.createCommunity(context).withName("My community").build(); - ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context, null, groupAnonymous) .withDspaceObject(community) .withAction(Constants.READ) - .withGroup(groupAnonymous) .build(); context.restoreAuthSystemState(); @@ -165,8 +167,10 @@ public void findOneUnAuthenticatedTest() throws Exception { context.turnOffAuthorisationSystem(); Community community = CommunityBuilder.createCommunity(context).withName("My community").build(); - ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context).withDspaceObject(community) - .withAction(Constants.READ).withUser(eperson).build(); + ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context, eperson, null) + .withDspaceObject(community) + .withAction(Constants.READ) + .build(); context.restoreAuthSystemState(); @@ -201,10 +205,9 @@ public void findOneForbiddenTest() throws Exception { Collection collection = CollectionBuilder.createCollection(context, community) .withName("My collection").build(); - ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context, eperson1, null) .withDspaceObject(collection) - .withAction(Constants.WRITE) - .withUser(eperson1).build(); + .withAction(Constants.WRITE).build(); context.restoreAuthSystemState(); @@ -228,10 +231,9 @@ public void findOneAccessGrantToAdminTest() throws Exception { Community community = CommunityBuilder.createCommunity(context).withName("My community").build(); - ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context, eperson1, null) .withDspaceObject(community) - .withAction(Constants.WRITE) - .withUser(eperson1).build(); + .withAction(Constants.WRITE).build(); context.restoreAuthSystemState(); @@ -262,10 +264,9 @@ public void findOneAccessGrantToSameUserTest() throws Exception { Collection collection = CollectionBuilder.createCollection(context, community) .withName("My collection").build(); - ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context, null, group1) .withDspaceObject(collection) .withAction(Constants.ADD) - .withGroup(group1) .build(); context.restoreAuthSystemState(); @@ -297,15 +298,13 @@ public void findOneResoucesPolicyByEpersonUuidTest() throws Exception { Community community = CommunityBuilder.createCommunity(context).withName("My community").build(); Community community2 = CommunityBuilder.createCommunity(context).withName("My community_2").build(); - ResourcePolicy resourcePolicyOfEPerson1 = ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicy resourcePolicyOfEPerson1 = ResourcePolicyBuilder.createResourcePolicy(context, eperson1, null) .withDspaceObject(community) - .withAction(Constants.ADD) - .withUser(eperson1).build(); + .withAction(Constants.ADD).build(); - ResourcePolicy resourcePolicyOfEPerson2 = ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicy resourcePolicyOfEPerson2 = ResourcePolicyBuilder.createResourcePolicy(context, eperson2, null) .withDspaceObject(community2) - .withAction(Constants.REMOVE) - .withUser(eperson2).build(); + .withAction(Constants.REMOVE).build(); context.restoreAuthSystemState(); @@ -336,20 +335,18 @@ public void findResoucesPoliciesByEpersonUuidAndResourceUuidTest() throws Except Collection collection = CollectionBuilder.createCollection(context, community).withName("My collection") .build(); - ResourcePolicy resourcePolicyOfCommunity = ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicy resourcePolicyOfCommunity = ResourcePolicyBuilder.createResourcePolicy(context, eperson1, null) .withDspaceObject(community) - .withAction(Constants.READ) - .withUser(eperson1).build(); + .withAction(Constants.READ).build(); - ResourcePolicy secondResourcePolicyOfCommunity = ResourcePolicyBuilder.createResourcePolicy(context) - .withDspaceObject(community) - .withAction(Constants.REMOVE) - .withUser(eperson1).build(); + ResourcePolicy secondResourcePolicyOfCommunity = ResourcePolicyBuilder + .createResourcePolicy(context, eperson1, null) + .withDspaceObject(community) + .withAction(Constants.REMOVE).build(); - ResourcePolicy resourcePolicyOfCollection = ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicy resourcePolicyOfCollection = ResourcePolicyBuilder.createResourcePolicy(context, eperson1, null) .withDspaceObject(collection) - .withAction(Constants.REMOVE) - .withUser(eperson1).build(); + .withAction(Constants.REMOVE).build(); context.restoreAuthSystemState(); @@ -395,10 +392,9 @@ public void findResoucesPoliciesByEPersonUuidUnAuthenticatedTest() throws Except Community community = CommunityBuilder.createCommunity(context).withName("My community").build(); - ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context, eperson1, null) .withDspaceObject(community) - .withAction(Constants.READ) - .withUser(eperson1).build(); + .withAction(Constants.READ).build(); context.restoreAuthSystemState(); @@ -437,15 +433,13 @@ public void findResourcesPoliciesByEPersonUuidForbiddenTest() throws Exception { Community community2 = CommunityBuilder.createCommunity(context).withName("My 2 community").build(); - ResourcePolicy resourcePolicyOfEPerson1 = ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicy resourcePolicyOfEPerson1 = ResourcePolicyBuilder.createResourcePolicy(context, eperson1, null) .withDspaceObject(community).withAction(Constants.WRITE) - .withPolicyType(ResourcePolicy.TYPE_CUSTOM) - .withUser(eperson1).build(); + .withPolicyType(ResourcePolicy.TYPE_CUSTOM).build(); - ResourcePolicy resourcePolicyOfEPerson2 = ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicy resourcePolicyOfEPerson2 = ResourcePolicyBuilder.createResourcePolicy(context, eperson2, null) .withDspaceObject(community2).withAction(Constants.ADD) - .withPolicyType(ResourcePolicy.TYPE_CUSTOM) - .withUser(eperson2).build(); + .withPolicyType(ResourcePolicy.TYPE_CUSTOM).build(); context.restoreAuthSystemState(); @@ -474,16 +468,18 @@ public void findResourcePoliciesOfOneResourceWithoutActionTest() throws Exceptio Community community2 = CommunityBuilder.createCommunity(context).withName("My second community").build(); - ResourcePolicy firstResourcePolicyOfEPerson1 = ResourcePolicyBuilder.createResourcePolicy(context) - .withDspaceObject(community) - .withAction(Constants.ADMIN) - .withUser(eperson1).build(); + ResourcePolicy firstResourcePolicyOfEPerson1 = ResourcePolicyBuilder + .createResourcePolicy(context, eperson1, null) + .withDspaceObject(community) + .withAction(Constants.ADMIN) + .build(); - ResourcePolicy firstResourcePolicyOfEPerson2 = ResourcePolicyBuilder.createResourcePolicy(context) - .withDspaceObject(community2) - .withAction(Constants.ADD) - .withPolicyType(ResourcePolicy.TYPE_CUSTOM) - .withUser(eperson2).build(); + ResourcePolicy firstResourcePolicyOfEPerson2 = ResourcePolicyBuilder + .createResourcePolicy(context, eperson2, null) + .withDspaceObject(community2) + .withAction(Constants.ADD) + .withPolicyType(ResourcePolicy.TYPE_CUSTOM) + .build(); ResourcePolicy resourcePolicyAnonymous = authorizeService .findByTypeGroupAction(context, community, EPersonServiceFactory.getInstance() @@ -528,20 +524,23 @@ public void findResourcePoliciesOfOneResourceWithActionTest() throws Exception { Community community2 = CommunityBuilder.createCommunity(context).withName("My 2 community").build(); - ResourcePolicy firstResourcePolicyOfEPerson1 = ResourcePolicyBuilder.createResourcePolicy(context) - .withDspaceObject(community) - .withAction(Constants.ADMIN) - .withUser(eperson1).build(); + ResourcePolicy firstResourcePolicyOfEPerson1 = ResourcePolicyBuilder + .createResourcePolicy(context, eperson1, null) + .withDspaceObject(community) + .withAction(Constants.ADMIN) + .build(); - ResourcePolicy firstResourcePolicyOfEPerson2 = ResourcePolicyBuilder.createResourcePolicy(context) - .withDspaceObject(community) - .withAction(Constants.ADD) - .withUser(eperson2).build(); + ResourcePolicy firstResourcePolicyOfEPerson2 = ResourcePolicyBuilder + .createResourcePolicy(context, eperson2, null) + .withDspaceObject(community) + .withAction(Constants.ADD) + .build(); - ResourcePolicy secondResourcePolicyOfEPerson2 = ResourcePolicyBuilder.createResourcePolicy(context) - .withDspaceObject(community2) - .withAction(Constants.ADD) - .withUser(eperson2).build(); + ResourcePolicy secondResourcePolicyOfEPerson2 = ResourcePolicyBuilder + .createResourcePolicy(context, eperson2, null) + .withDspaceObject(community2) + .withAction(Constants.ADD) + .build(); context.restoreAuthSystemState(); @@ -592,28 +591,32 @@ public void findResourcePoliciesOfOneResourcePaginationTest() throws Exception { Community community = CommunityBuilder.createCommunity(context).withName("My community").build(); - ResourcePolicy firstResourcePolicyOfEPerson1 = ResourcePolicyBuilder.createResourcePolicy(context) - .withDspaceObject(community) - .withAction(Constants.ADMIN) - .withUser(eperson1).build(); + ResourcePolicy firstResourcePolicyOfEPerson1 = ResourcePolicyBuilder + .createResourcePolicy(context, eperson1, null) + .withDspaceObject(community) + .withAction(Constants.ADMIN) + .build(); - ResourcePolicy firstResourcePolicyOfEPerson2 = ResourcePolicyBuilder.createResourcePolicy(context) - .withDspaceObject(community) - .withAction(Constants.ADD) - .withPolicyType(ResourcePolicy.TYPE_CUSTOM) - .withUser(eperson2).build(); + ResourcePolicy firstResourcePolicyOfEPerson2 = ResourcePolicyBuilder + .createResourcePolicy(context, eperson2, null) + .withDspaceObject(community) + .withAction(Constants.ADD) + .withPolicyType(ResourcePolicy.TYPE_CUSTOM) + .build(); - ResourcePolicy firstResourcePolicyOfEPerson3 = ResourcePolicyBuilder.createResourcePolicy(context) - .withDspaceObject(community) - .withAction(Constants.DELETE) - .withPolicyType(ResourcePolicy.TYPE_CUSTOM) - .withUser(eperson3).build(); + ResourcePolicy firstResourcePolicyOfEPerson3 = ResourcePolicyBuilder + .createResourcePolicy(context, eperson3, null) + .withDspaceObject(community) + .withAction(Constants.DELETE) + .withPolicyType(ResourcePolicy.TYPE_CUSTOM) + .build(); - ResourcePolicy firstResourcePolicyOfEPerson4 = ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicy firstResourcePolicyOfEPerson4 = ResourcePolicyBuilder + .createResourcePolicy(context, eperson4, null) .withDspaceObject(community) .withAction(Constants.WRITE) .withPolicyType(ResourcePolicy.TYPE_CUSTOM) - .withUser(eperson4).build(); + .build(); ResourcePolicy resourcePolicyAnonymous = authorizeService .findByTypeGroupAction(context, community, EPersonServiceFactory.getInstance() @@ -701,10 +704,9 @@ public void findResoucesPoliciesByResourceUuidUnAuthenticatedTest() throws Excep Community community = CommunityBuilder.createCommunity(context).withName("My community").build(); - ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context, eperson1, null) .withDspaceObject(community) - .withAction(Constants.READ) - .withUser(eperson1).build(); + .withAction(Constants.READ).build(); context.restoreAuthSystemState(); @@ -742,17 +744,15 @@ public void findResourcesPoliciesByResourceUuidForbiddenTest() throws Exception Community community2 = CommunityBuilder.createCommunity(context).withName("My 2 community").build(); - ResourcePolicy resourcePolicyOfEPerson1 = ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicy resourcePolicyOfEPerson1 = ResourcePolicyBuilder.createResourcePolicy(context, eperson1, null) .withDspaceObject(community) .withAction(Constants.REMOVE) - .withPolicyType(ResourcePolicy.TYPE_CUSTOM) - .withUser(eperson1).build(); + .withPolicyType(ResourcePolicy.TYPE_CUSTOM).build(); - ResourcePolicy resourcePolicyOfEPerson2 = ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicy resourcePolicyOfEPerson2 = ResourcePolicyBuilder.createResourcePolicy(context, eperson2, null) .withDspaceObject(community2) .withAction(Constants.ADD) - .withPolicyType(ResourcePolicy.TYPE_CUSTOM) - .withUser(eperson2).build(); + .withPolicyType(ResourcePolicy.TYPE_CUSTOM).build(); context.restoreAuthSystemState(); @@ -791,25 +791,22 @@ public void findResourcePoliciesByGroupUuidTest() throws Exception { .withName("My collection") .build(); - ResourcePolicy firstResourcePolicyOfGroup1 = ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicy firstResourcePolicyOfGroup1 = ResourcePolicyBuilder.createResourcePolicy(context, null, group1) .withDspaceObject(community) - .withAction(Constants.ADD) - .withGroup(group1).build(); + .withAction(Constants.ADD).build(); - ResourcePolicy secondResourcePolicyOfGroup1 = ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicy secondResourcePolicyOfGroup1 = ResourcePolicyBuilder.createResourcePolicy(context, null, group1) .withDspaceObject(community) - .withAction(Constants.READ) - .withGroup(group1).build(); + .withAction(Constants.READ).build(); - ResourcePolicy collectionResourcePolicyOfGroup1 = ResourcePolicyBuilder.createResourcePolicy(context) - .withDspaceObject(collection) - .withAction(Constants.WRITE) - .withGroup(group1).build(); + ResourcePolicy collectionResourcePolicyOfGroup1 = ResourcePolicyBuilder + .createResourcePolicy(context, null, group1) + .withDspaceObject(collection) + .withAction(Constants.WRITE).build(); - ResourcePolicy firstResourcePolicyOfGroup2 = ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicy firstResourcePolicyOfGroup2 = ResourcePolicyBuilder.createResourcePolicy(context, null, group2) .withDspaceObject(community2) - .withAction(Constants.ADD) - .withGroup(group2).build(); + .withAction(Constants.ADD).build(); context.restoreAuthSystemState(); @@ -857,15 +854,13 @@ public void findResourcePoliciesByGroupUuidAndResourceUuidTest() throws Exceptio Community community = CommunityBuilder.createCommunity(context).withName("My community").build(); Community community2 = CommunityBuilder.createCommunity(context).withName("My second community").build(); - ResourcePolicy firstResourcePolicyOfGroup1 = ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicy firstResourcePolicyOfGroup1 = ResourcePolicyBuilder.createResourcePolicy(context, null, group1) .withDspaceObject(community) - .withAction(Constants.ADD) - .withGroup(group1).build(); + .withAction(Constants.ADD).build(); - ResourcePolicy secondResourcePolicyOfGroup1 = ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicy secondResourcePolicyOfGroup1 = ResourcePolicyBuilder.createResourcePolicy(context, null, group1) .withDspaceObject(community2) - .withAction(Constants.WRITE) - .withGroup(group1).build(); + .withAction(Constants.WRITE).build(); context.restoreAuthSystemState(); @@ -913,10 +908,9 @@ public void findResoucesPoliciesByGroupUuidUnAuthenticatedTest() throws Exceptio Community community = CommunityBuilder.createCommunity(context).withName("My community").build(); - ResourcePolicy firstResourcePolicyOfGroup1 = ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicy firstResourcePolicyOfGroup1 = ResourcePolicyBuilder.createResourcePolicy(context, null, group1) .withDspaceObject(community) - .withAction(Constants.ADD) - .withGroup(group1).build(); + .withAction(Constants.ADD).build(); context.restoreAuthSystemState(); @@ -953,10 +947,9 @@ public void findResourcesPoliciesByGroupUuidForbiddenTest() throws Exception { Community community = CommunityBuilder.createCommunity(context).withName("My community").build(); - ResourcePolicy resourcePolicyOfGroup1 = ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicy resourcePolicyOfGroup1 = ResourcePolicyBuilder.createResourcePolicy(context, null, group1) .withDspaceObject(community).withAction(Constants.WRITE) - .withPolicyType(ResourcePolicy.TYPE_CUSTOM) - .withGroup(group1).build(); + .withPolicyType(ResourcePolicy.TYPE_CUSTOM).build(); context.restoreAuthSystemState(); @@ -981,10 +974,10 @@ public void findResourcesPoliciesByGroupAnonymousTest() throws Exception { Community community = CommunityBuilder.createCommunity(context).withName("My community").build(); - ResourcePolicy resourcePolicyOfGroup1 = ResourcePolicyBuilder.createResourcePolicy(context) - .withDspaceObject(community).withAction(Constants.WRITE) - .withPolicyType(ResourcePolicy.TYPE_CUSTOM) - .withGroup(groupAnonymous).build(); + ResourcePolicy resourcePolicyOfGroup1 = ResourcePolicyBuilder + .createResourcePolicy(context, null, groupAnonymous) + .withDspaceObject(community).withAction(Constants.WRITE) + .withPolicyType(ResourcePolicy.TYPE_CUSTOM).build(); context.restoreAuthSystemState(); @@ -1005,7 +998,7 @@ public void createWithEPersonTest() throws Exception { AtomicReference idRef = new AtomicReference(); try { Community community = CommunityBuilder.createCommunity(context) - .withName("My commynity") + .withName("My community") .build(); EPerson eperson1 = EPersonBuilder.createEPerson(context) @@ -1052,6 +1045,98 @@ public void createWithEPersonTest() throws Exception { ResourcePolicyBuilder.delete(idRef.get()); } } + @Test + public void createWithGroupTest() throws Exception { + context.turnOffAuthorisationSystem(); + + AtomicReference idRef = new AtomicReference(); + try { + Community community = CommunityBuilder.createCommunity(context) + .withName("My community") + .build(); + + EPerson eperson1 = EPersonBuilder.createEPerson(context) + .withEmail("eperson1@mail.com") + .withPassword("qwerty01") + .build(); + + Group group1 = GroupBuilder.createGroup(context) + .withName("Group 1") + .addMember(eperson1) + .build(); + + context.restoreAuthSystemState(); + + ObjectMapper mapper = new ObjectMapper(); + ResourcePolicyRest resourcePolicyRest = new ResourcePolicyRest(); + + resourcePolicyRest.setPolicyType(ResourcePolicy.TYPE_SUBMISSION); + resourcePolicyRest.setAction(Constants.actionText[Constants.READ]); + + String authToken = getAuthToken(admin.getEmail(), password); + getClient(authToken) + .perform(post("/api/authz/resourcepolicies") + .content(mapper.writeValueAsBytes(resourcePolicyRest)) + .param("resource", community.getID().toString()) + .param("group", group1.getID().toString()) + .param("projections", "full") + .contentType(contentType)) + .andExpect(status().isCreated()) + .andExpect(content().contentType(contentType)) + .andExpect(jsonPath("$", ResourcePolicyMatcher.matchFullEmbeds())) + .andExpect(jsonPath("$", Matchers.allOf( + hasJsonPath("$.name", is(resourcePolicyRest.getName())), + hasJsonPath("$.description", is(resourcePolicyRest.getDescription())), + hasJsonPath("$.policyType", is(resourcePolicyRest.getPolicyType())), + hasJsonPath("$.action", is(resourcePolicyRest.getAction())), + hasJsonPath("$.startDate", is(resourcePolicyRest.getStartDate())), + hasJsonPath("$.endDate", is(resourcePolicyRest.getEndDate())), + hasJsonPath("$.type", is(resourcePolicyRest.getType()))))) + .andDo(result -> idRef.set(read(result.getResponse().getContentAsString(), "$.id"))); + + String authToken1 = getAuthToken(eperson1.getEmail(), "qwerty01"); + getClient(authToken1).perform(get("/api/authz/resourcepolicies/" + idRef.get())) + .andExpect(status().isOk()) + .andExpect(content().contentType(contentType)) + .andExpect(jsonPath("$._links.self.href", + Matchers.containsString("/api/authz/resourcepolicies/" + idRef.get()))); + } finally { + ResourcePolicyBuilder.delete(idRef.get()); + } + } + + @Test + public void createWithoutGroupOrPersonTest() throws Exception { + context.turnOffAuthorisationSystem(); + Community community = CommunityBuilder.createCommunity(context) + .withName("My commynity") + .build(); + + + context.restoreAuthSystemState(); + + ObjectMapper mapper = new ObjectMapper(); + ResourcePolicyRest resourcePolicyRest = new ResourcePolicyRest(); + + resourcePolicyRest.setPolicyType(ResourcePolicy.TYPE_SUBMISSION); + resourcePolicyRest.setAction(Constants.actionText[Constants.ADMIN]); + + String authToken = getAuthToken(admin.getEmail(), password); + getClient(authToken).perform(post("/api/authz/resourcepolicies") + .content(mapper.writeValueAsBytes(resourcePolicyRest)) + .param("resource", community.getID().toString()) + .contentType(contentType)) + .andExpect(status().isBadRequest()); + + getClient(authToken).perform(get("/api/authz/resourcepolicies/search/resource") + .param("uuid", community.getID().toString()) + .param("action", "ADMIN")) + .andExpect(status().isOk()) + .andExpect(content().contentType(contentType)) + .andExpect(jsonPath("$._links.self.href", + Matchers.containsString("api/authz/resourcepolicies/search/resource"))) + .andExpect(jsonPath("$.page.totalElements", is(0))); + } @Test public void createOneUnAuthenticatedTest() throws Exception { @@ -1143,9 +1228,8 @@ public void deleteOne() throws Exception { .withName("My community") .build(); - ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context, eperson1, null) .withDspaceObject(community) - .withUser(eperson1) .withAction(Constants.ADMIN) .build(); @@ -1170,11 +1254,10 @@ public void deleteOneUnAuthenticatedTest() throws Exception { .withPassword("qwerty01") .build(); - ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context, eperson1, null) .withDspaceObject(community) .withAction(Constants.DELETE) .withPolicyType(ResourcePolicy.TYPE_CUSTOM) - .withUser(eperson1) .build(); context.restoreAuthSystemState(); @@ -1200,10 +1283,9 @@ public void deleteOneForbiddenTest() throws Exception { Collection collection = CollectionBuilder.createCollection(context, community) .withName("My collection").build(); - ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context, eperson1, null) .withDspaceObject(collection) - .withAction(Constants.ADD) - .withUser(eperson1).build(); + .withAction(Constants.ADD).build(); context.restoreAuthSystemState(); @@ -1253,10 +1335,10 @@ public void patchReplaceStartDateTest() throws Exception { Date data = calendar.getTime(); - ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context, null, + EPersonServiceFactory.getInstance().getGroupService().findByName(context, Group.ANONYMOUS)) .withAction(Constants.READ) .withDspaceObject(publicItem1) - .withGroup(EPersonServiceFactory.getInstance().getGroupService().findByName(context, Group.ANONYMOUS)) .withStartDate(data) .withPolicyType(ResourcePolicy.TYPE_CUSTOM) .build(); @@ -1323,10 +1405,10 @@ public void patchReplaceEndDateTest() throws Exception { Date date = calendar.getTime(); - ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context, null, + EPersonServiceFactory.getInstance().getGroupService().findByName(context, Group.ANONYMOUS)) .withAction(Constants.READ) .withDspaceObject(publicItem1) - .withGroup(EPersonServiceFactory.getInstance().getGroupService().findByName(context, Group.ANONYMOUS)) .withEndDate(date) .withPolicyType(ResourcePolicy.TYPE_CUSTOM) .build(); @@ -1385,10 +1467,10 @@ public void patchAddStartDateTest() throws Exception { .withTitle("Public item") .build(); - ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context, null, + EPersonServiceFactory.getInstance().getGroupService().findByName(context, Group.ANONYMOUS)) .withAction(Constants.READ) .withDspaceObject(publicItem1) - .withGroup(EPersonServiceFactory.getInstance().getGroupService().findByName(context, Group.ANONYMOUS)) .withPolicyType(ResourcePolicy.TYPE_CUSTOM) .build(); @@ -1446,13 +1528,12 @@ public void patchAddEndDateTest() throws Exception { .withTitle("Public item") .build(); - ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context,null, + EPersonServiceFactory.getInstance().getGroupService() + .findByName(context, Group.ANONYMOUS) + ) .withAction(Constants.READ) .withDspaceObject(publicItem1) - .withGroup( - EPersonServiceFactory.getInstance().getGroupService() - .findByName(context, - Group.ANONYMOUS)) .withPolicyType(ResourcePolicy.TYPE_CUSTOM) .build(); @@ -1513,10 +1594,10 @@ public void patchRemoveStartDateTest() throws Exception { Date data = calendar.getTime(); - ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context, null, + EPersonServiceFactory.getInstance().getGroupService().findByName(context, Group.ANONYMOUS)) .withAction(Constants.READ) .withDspaceObject(publicItem1) - .withGroup(EPersonServiceFactory.getInstance().getGroupService().findByName(context, Group.ANONYMOUS)) .withStartDate(data) .withPolicyType(ResourcePolicy.TYPE_CUSTOM) .build(); @@ -1574,10 +1655,10 @@ public void patchReplaceStartDateBadRequestTest() throws Exception { Date date = calendar.getTime(); - ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context, null, + EPersonServiceFactory.getInstance().getGroupService().findByName(context, Group.ANONYMOUS)) .withAction(Constants.READ) .withDspaceObject(publicItem1) - .withGroup(EPersonServiceFactory.getInstance().getGroupService().findByName(context, Group.ANONYMOUS)) .withStartDate(date) .withDescription("my description") .withPolicyType(ResourcePolicy.TYPE_CUSTOM) @@ -1625,7 +1706,7 @@ public void patchReplaceStartDateUnAuthenticatedTest() throws Exception { Date date = calendar.getTime(); - ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context, eperson, null) .withAction(Constants.WRITE) .withDspaceObject(item) .withStartDate(date) @@ -1687,10 +1768,10 @@ public void patchReplaceStartDateForbiddenTest() throws Exception { Date date = calendar.getTime(); - ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context, null, + EPersonServiceFactory.getInstance().getGroupService().findByName(context, Group.ANONYMOUS)) .withAction(Constants.READ) .withDspaceObject(item) - .withGroup(EPersonServiceFactory.getInstance().getGroupService().findByName(context, Group.ANONYMOUS)) .withStartDate(date) .withPolicyType(ResourcePolicy.TYPE_CUSTOM) .build(); @@ -1793,10 +1874,9 @@ public void patchReplaceEndDateBeforeStartDateTest() throws Exception { Date endDate = calendarEndDate.getTime(); - ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context, eperson1, null) .withAction(Constants.READ) .withDspaceObject(publicItem1) - .withUser(eperson1) .withStartDate(startDate) .withEndDate(endDate) .withPolicyType(ResourcePolicy.TYPE_CUSTOM) @@ -1851,10 +1931,10 @@ public void patchReplaceDescriptionTest() throws Exception { .withTitle("Public item") .build(); - ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context, null, + EPersonServiceFactory.getInstance().getGroupService().findByName(context, Group.ANONYMOUS)) .withAction(Constants.READ) .withDspaceObject(publicItem1) - .withGroup(EPersonServiceFactory.getInstance().getGroupService().findByName(context, Group.ANONYMOUS)) .withDescription("my description") .withPolicyType(ResourcePolicy.TYPE_CUSTOM) .build(); @@ -1903,10 +1983,10 @@ public void patchAddDescriptionTest() throws Exception { .withTitle("Public item") .build(); - ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context, null, + EPersonServiceFactory.getInstance().getGroupService().findByName(context, Group.ANONYMOUS)) .withAction(Constants.READ) .withDspaceObject(item) - .withGroup(EPersonServiceFactory.getInstance().getGroupService().findByName(context, Group.ANONYMOUS)) .withPolicyType(ResourcePolicy.TYPE_CUSTOM) .build(); @@ -1954,11 +2034,11 @@ public void patchRemoveDescriptionTest() throws Exception { .withTitle("Public item") .build(); - ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context, null, + EPersonServiceFactory.getInstance().getGroupService().findByName(context, Group.ANONYMOUS)) .withAction(Constants.READ) .withDspaceObject(item) .withDescription("my description") - .withGroup(EPersonServiceFactory.getInstance().getGroupService().findByName(context, Group.ANONYMOUS)) .withPolicyType(ResourcePolicy.TYPE_CUSTOM) .build(); @@ -1996,7 +2076,7 @@ public void patchReplaceDescriptionUnAuthenticatedTest() throws Exception { Item item = ItemBuilder.createItem(context, collection).build(); - ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context, eperson, null) .withAction(Constants.WRITE) .withDspaceObject(item) .withDescription("My Description") @@ -2042,10 +2122,10 @@ public void patchReplaceDescriptionForbiddenTest() throws Exception { .withTitle("Public item") .build(); - ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context, null, + EPersonServiceFactory.getInstance().getGroupService().findByName(context, Group.ANONYMOUS)) .withAction(Constants.READ) .withDspaceObject(item) - .withGroup(EPersonServiceFactory.getInstance().getGroupService().findByName(context, Group.ANONYMOUS)) .withDescription("My Description") .withPolicyType(ResourcePolicy.TYPE_CUSTOM) .build(); @@ -2098,10 +2178,10 @@ public void patchReplaceDescriptionBadRequestTest() throws Exception { .withTitle("Public item") .build(); - ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context, null, + EPersonServiceFactory.getInstance().getGroupService().findByName(context, Group.ANONYMOUS)) .withAction(Constants.READ) .withDspaceObject(publicItem1) - .withGroup(EPersonServiceFactory.getInstance().getGroupService().findByName(context, Group.ANONYMOUS)) .withDescription("my description") .withPolicyType(ResourcePolicy.TYPE_CUSTOM) .build(); @@ -2146,10 +2226,10 @@ public void patchReplaceNameTest() throws Exception { .withTitle("Public item") .build(); - ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context, null, + EPersonServiceFactory.getInstance().getGroupService().findByName(context, Group.ANONYMOUS)) .withAction(Constants.READ) .withDspaceObject(myItem) - .withGroup(EPersonServiceFactory.getInstance().getGroupService().findByName(context, Group.ANONYMOUS)) .withName("My name") .withPolicyType(ResourcePolicy.TYPE_CUSTOM) .build(); @@ -2197,10 +2277,10 @@ public void patchReplaceNameBadRequestTest() throws Exception { .withTitle("Public item") .build(); - ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context, null, + EPersonServiceFactory.getInstance().getGroupService().findByName(context, Group.ANONYMOUS)) .withAction(Constants.READ) .withDspaceObject(myItem) - .withGroup(EPersonServiceFactory.getInstance().getGroupService().findByName(context, Group.ANONYMOUS)) .withName("My name") .withPolicyType(ResourcePolicy.TYPE_CUSTOM) .build(); @@ -2245,10 +2325,10 @@ public void patchAddNameTest() throws Exception { .withTitle("Public item") .build(); - ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context, null, + EPersonServiceFactory.getInstance().getGroupService().findByName(context, Group.ANONYMOUS)) .withAction(Constants.READ) .withDspaceObject(myItem) - .withGroup(EPersonServiceFactory.getInstance().getGroupService().findByName(context, Group.ANONYMOUS)) .withPolicyType(ResourcePolicy.TYPE_CUSTOM) .build(); @@ -2290,10 +2370,9 @@ public void patchAddActionTest() throws Exception { .withTitle("Public item") .build(); - ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context, eperson, null) .withAction(Constants.READ) .withDspaceObject(myItem) - .withUser(eperson) .withName("My Name") .build(); @@ -2334,10 +2413,9 @@ public void patchReplaceActionTest() throws Exception { .withTitle("Public item") .build(); - ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context, eperson, null) .withAction(Constants.READ) .withDspaceObject(myItem) - .withUser(eperson) .withName("My name") .withPolicyType(ResourcePolicy.TYPE_SUBMISSION) .build(); @@ -2374,7 +2452,7 @@ public void patchReplaceActionUnauthenticatedTest() throws Exception { Item item = ItemBuilder.createItem(context, collection).build(); - ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context, eperson, null) .withAction(Constants.WRITE) .withDspaceObject(item) .withPolicyType(ResourcePolicy.TYPE_CUSTOM) @@ -2413,10 +2491,9 @@ public void patchReplaceActionForbiddenTest() throws Exception { .withTitle("Public item") .build(); - ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context, eperson, null) .withAction(Constants.READ) .withDspaceObject(item) - .withUser(eperson) .withPolicyType(ResourcePolicy.TYPE_CUSTOM) .build(); @@ -2464,10 +2541,9 @@ public void patchReplaceActionUnprocessableEntityTest() throws Exception { .withTitle("Public item") .build(); - ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context, eperson, null) .withAction(Constants.READ) .withDspaceObject(publicItem1) - .withUser(eperson) .withPolicyType(ResourcePolicy.TYPE_CUSTOM) .build(); @@ -2500,10 +2576,9 @@ public void patchAddPolicyTypeTest() throws Exception { .withTitle("Public item") .build(); - ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context, eperson, null) .withAction(Constants.READ) .withDspaceObject(myItem) - .withUser(eperson) .withName("My Name") .build(); @@ -2545,10 +2620,9 @@ public void patchRemovePolicyTypeTest() throws Exception { .withTitle("Public item") .build(); - ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context, eperson, null) .withAction(Constants.READ) .withDspaceObject(myItem) - .withUser(eperson) .withName("My Name") .withPolicyType(ResourcePolicy.TYPE_CUSTOM) .build(); @@ -2590,10 +2664,9 @@ public void patchReplacePolicyTypeTest() throws Exception { .withTitle("Public item") .build(); - ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context, eperson, null) .withAction(Constants.READ) .withDspaceObject(myItem) - .withUser(eperson) .withName("My name") .withPolicyType(ResourcePolicy.TYPE_SUBMISSION) .build(); @@ -2632,7 +2705,7 @@ public void patchReplacePolicyTypeUnauthenticatedTest() throws Exception { Item item = ItemBuilder.createItem(context, collection).build(); - ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context, eperson, null) .withAction(Constants.WRITE) .withDspaceObject(item) .withPolicyType(ResourcePolicy.TYPE_CUSTOM) @@ -2672,10 +2745,9 @@ public void patchReplacePolicyTypeForbiddenTest() throws Exception { .withTitle("Public item") .build(); - ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context, eperson, null) .withAction(Constants.READ) .withDspaceObject(item) - .withUser(eperson) .withPolicyType(ResourcePolicy.TYPE_CUSTOM) .build(); @@ -2722,10 +2794,9 @@ public void patchReplacePolicyTypeBadRequestTest() throws Exception { .withTitle("Public item") .build(); - ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context, eperson, null) .withAction(Constants.READ) .withDspaceObject(publicItem1) - .withUser(eperson) .withPolicyType(ResourcePolicy.TYPE_CUSTOM) .build(); @@ -2763,11 +2834,11 @@ public void patchAddNameBadRequestTest() throws Exception { .withTitle("Public item") .build(); - ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context, null, + EPersonServiceFactory.getInstance().getGroupService().findByName(context, Group.ANONYMOUS)) .withAction(Constants.READ) .withDspaceObject(myItem) .withName("My name") - .withGroup(EPersonServiceFactory.getInstance().getGroupService().findByName(context, Group.ANONYMOUS)) .withPolicyType(ResourcePolicy.TYPE_CUSTOM) .build(); @@ -2811,10 +2882,10 @@ public void patchRemoveNameTest() throws Exception { .withTitle("Public item") .build(); - ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context, null, + EPersonServiceFactory.getInstance().getGroupService().findByName(context, Group.ANONYMOUS)) .withAction(Constants.READ) .withDspaceObject(myItem) - .withGroup(EPersonServiceFactory.getInstance().getGroupService().findByName(context, Group.ANONYMOUS)) .withName("My Name") .withPolicyType(ResourcePolicy.TYPE_CUSTOM) .build(); @@ -2860,10 +2931,10 @@ public void patchRemoveNameForbiddenTest() throws Exception { .withTitle("Public item") .build(); - ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context, null, + EPersonServiceFactory.getInstance().getGroupService().findByName(context, Group.ANONYMOUS)) .withAction(Constants.READ) .withDspaceObject(myItem) - .withGroup(EPersonServiceFactory.getInstance().getGroupService().findByName(context, Group.ANONYMOUS)) .withName("My Name") .withPolicyType(ResourcePolicy.TYPE_CUSTOM) .build(); @@ -2923,12 +2994,12 @@ public void patchSuccessfulMultipleOperationsTest() throws Exception { Date endDate = calendarEndDate.getTime(); - ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context, null, + EPersonServiceFactory.getInstance().getGroupService().findByName(context, Group.ANONYMOUS)) .withAction(Constants.READ) .withDspaceObject(publicItem1) .withStartDate(startDate) .withEndDate(endDate) - .withGroup(EPersonServiceFactory.getInstance().getGroupService().findByName(context, Group.ANONYMOUS)) .withPolicyType(ResourcePolicy.TYPE_CUSTOM) .build(); @@ -3013,12 +3084,12 @@ public void patchWithMultipleOperationsFailTest() throws Exception { Date endDate = calendarEndDate.getTime(); - ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context, null, + EPersonServiceFactory.getInstance().getGroupService().findByName(context, Group.ANONYMOUS)) .withAction(Constants.READ) .withDspaceObject(publicItem1) .withName("My Name") .withEndDate(endDate) - .withGroup(EPersonServiceFactory.getInstance().getGroupService().findByName(context, Group.ANONYMOUS)) .withPolicyType(ResourcePolicy.TYPE_CUSTOM) .build(); @@ -3092,25 +3163,21 @@ public void findResourcePoliciesByGroupUuidPaginationTest() throws Exception { .withName("My collection") .build(); - ResourcePolicy rpCommunityADD = ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicy rpCommunityADD = ResourcePolicyBuilder.createResourcePolicy(context, null, group1) .withDspaceObject(community) - .withAction(Constants.ADD) - .withGroup(group1).build(); + .withAction(Constants.ADD).build(); - ResourcePolicy rpCommunityREAD = ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicy rpCommunityREAD = ResourcePolicyBuilder.createResourcePolicy(context, null, group1) .withDspaceObject(community) - .withAction(Constants.READ) - .withGroup(group1).build(); + .withAction(Constants.READ).build(); - ResourcePolicy rpCommunity2READ = ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicy rpCommunity2READ = ResourcePolicyBuilder.createResourcePolicy(context, null, group1) .withDspaceObject(community2) - .withAction(Constants.READ) - .withGroup(group1).build(); + .withAction(Constants.READ).build(); - ResourcePolicy rpCollectionWRITE = ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicy rpCollectionWRITE = ResourcePolicyBuilder.createResourcePolicy(context, null, group1) .withDspaceObject(collection) - .withAction(Constants.WRITE) - .withGroup(group1).build(); + .withAction(Constants.WRITE).build(); context.restoreAuthSystemState(); @@ -3213,10 +3280,9 @@ public void patchReplaceEPersonAdminTest() throws Exception { .withName("Collection 1") .build(); - ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context, eperson, null) .withAction(Constants.ADD) .withDspaceObject(col) - .withUser(eperson) .withDescription("My Description") .withPolicyType(ResourcePolicy.TYPE_CUSTOM) .build(); @@ -3260,10 +3326,9 @@ public void patchReplaceEPersonForbiddenTest() throws Exception { .withName("Collection 1") .build(); - ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context, eperson, null) .withAction(Constants.ADD) .withDspaceObject(col) - .withUser(eperson) .withDescription("My Description") .withPolicyType(ResourcePolicy.TYPE_CUSTOM) .build(); @@ -3308,10 +3373,9 @@ public void patchReplaceEPersonUnauthorizedTest() throws Exception { .withName("Collection 1") .build(); - ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context, eperson, null) .withAction(Constants.ADD) .withDspaceObject(col) - .withUser(eperson) .withDescription("My Description") .withPolicyType(ResourcePolicy.TYPE_CUSTOM) .build(); @@ -3358,10 +3422,9 @@ public void patchReplaceGroupAdminTest() throws Exception { .withName("Collection 1") .build(); - ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context, null, originGroup) .withAction(Constants.ADD) .withDspaceObject(col) - .withGroup(originGroup) .withDescription("My Description") .withPolicyType(ResourcePolicy.TYPE_CUSTOM) .build(); @@ -3408,10 +3471,9 @@ public void patchReplaceGroupForbiddenTest() throws Exception { .withName("Collection 1") .build(); - ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context, null, originGroup) .withAction(Constants.ADD) .withDspaceObject(col) - .withGroup(originGroup) .withDescription("My Description") .withPolicyType(ResourcePolicy.TYPE_CUSTOM) .build(); @@ -3459,10 +3521,9 @@ public void patchReplaceGroupUnauthorizedTest() throws Exception { .withName("Collection 1") .build(); - ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicy resourcePolicy = ResourcePolicyBuilder.createResourcePolicy(context, null, originGroup) .withAction(Constants.ADD) .withDspaceObject(col) - .withGroup(originGroup) .withDescription("My Description") .withPolicyType(ResourcePolicy.TYPE_CUSTOM) .build(); @@ -3501,10 +3562,9 @@ public void updateResourcePolicyOfEPersonToGroupTest() throws Exception { .withName("My community") .build(); - ResourcePolicy resourcePolicyOfEPerson = ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicy resourcePolicyOfEPerson = ResourcePolicyBuilder.createResourcePolicy(context, eperson, null) .withDspaceObject(community) .withAction(Constants.READ) - .withUser(eperson) .build(); context.restoreAuthSystemState(); @@ -3534,10 +3594,9 @@ public void updateResourcePolicyOfGroupToEPersonTest() throws Exception { .withName("My community") .build(); - ResourcePolicy resourcePolicyOfGroup = ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicy resourcePolicyOfGroup = ResourcePolicyBuilder.createResourcePolicy(context, null, group) .withDspaceObject(community) - .withAction(Constants.ADD) - .withGroup(group).build(); + .withAction(Constants.ADD).build(); context.restoreAuthSystemState(); @@ -3597,10 +3656,9 @@ public void updateResourcePolicyOfGroupWithEmptyTest() throws Exception { .build(); - ResourcePolicy resourcePolicyOfGroup = ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicy resourcePolicyOfGroup = ResourcePolicyBuilder.createResourcePolicy(context, null, group) .withDspaceObject(community) - .withAction(Constants.ADD) - .withGroup(group).build(); + .withAction(Constants.ADD).build(); context.restoreAuthSystemState(); String tokenAdmin = getAuthToken(admin.getEmail(), password); @@ -3622,10 +3680,9 @@ public void updateResourcePolicyOfGroupWithMultipleGroupsTest() throws Exception .withName("My community") .build(); - ResourcePolicy resourcePolicyOfGroup = ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicy resourcePolicyOfGroup = ResourcePolicyBuilder.createResourcePolicy(context, null, group1) .withDspaceObject(community) - .withAction(Constants.ADD) - .withGroup(group1).build(); + .withAction(Constants.ADD).build(); context.restoreAuthSystemState(); String tokenAdmin = getAuthToken(admin.getEmail(), password); @@ -3642,10 +3699,9 @@ public void updateResourcePolicyOfEPersonWithEmptyTest() throws Exception { Community community = CommunityBuilder.createCommunity(context).withName("My community").build(); - ResourcePolicy rpOfEPerson = ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicy rpOfEPerson = ResourcePolicyBuilder.createResourcePolicy(context, eperson, null) .withDspaceObject(community) .withAction(Constants.READ) - .withUser(eperson) .build(); context.restoreAuthSystemState(); @@ -3671,10 +3727,9 @@ public void updateResourcePolicyOfEPersonWithMultipleEPersonsTest() throws Excep Community community = CommunityBuilder.createCommunity(context).withName("My community").build(); - ResourcePolicy rpOfEPerson = ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicy rpOfEPerson = ResourcePolicyBuilder.createResourcePolicy(context, eperson, null) .withDspaceObject(community) .withAction(Constants.READ) - .withUser(eperson) .build(); context.restoreAuthSystemState(); diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/ScieloImportMetadataSourceServiceIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/ScieloImportMetadataSourceServiceIT.java index aafc75a065a1..c12eff1f176e 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/ScieloImportMetadataSourceServiceIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/ScieloImportMetadataSourceServiceIT.java @@ -17,8 +17,8 @@ import java.util.Arrays; import java.util.Collection; import java.util.List; -import javax.el.MethodNotFoundException; +import jakarta.el.MethodNotFoundException; import org.apache.commons.io.IOUtils; import org.apache.http.client.methods.CloseableHttpResponse; import org.apache.http.impl.client.CloseableHttpClient; diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/ScopusImportMetadataSourceServiceIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/ScopusImportMetadataSourceServiceIT.java index 90567de6725c..bb174dffa6cd 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/ScopusImportMetadataSourceServiceIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/ScopusImportMetadataSourceServiceIT.java @@ -113,8 +113,7 @@ public void scopusImportMetadataGetRecordsEmptyResponseTest() throws Exception { context.restoreAuthSystemState(); Collection recordsImported = scopusServiceImpl.getRecords("roma", 0, 20); - ImportRecord importedRecord = recordsImported.iterator().next(); - assertTrue(importedRecord.getValueList().isEmpty()); + assertTrue(recordsImported.isEmpty()); } finally { liveImportClientImpl.setHttpClient(originalHttpClient); scopusServiceImpl.setApiKey(originApiKey); @@ -307,4 +306,4 @@ private String getResponseWithCreatorAndWithoutAuthorsElement() { ""; } -} \ No newline at end of file +} diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/SiteRestRepositoryIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/SiteRestRepositoryIT.java index 26b01071d179..724e785ba2ab 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/SiteRestRepositoryIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/SiteRestRepositoryIT.java @@ -133,7 +133,7 @@ public void patchReplaceMultipleDescriptionSite() throws Exception { getClient(token) .perform(patch("/api/core/sites/" + site.getID()) .content(requestBody) - .contentType(javax.ws.rs.core.MediaType.APPLICATION_JSON_PATCH_JSON)) + .contentType(jakarta.ws.rs.core.MediaType.APPLICATION_JSON_PATCH_JSON)) .andExpect(status().isOk()) .andExpect( jsonPath("$.metadata", diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/SitemapRestControllerIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/SitemapRestControllerIT.java index 04d22718e846..681e9bf16b04 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/SitemapRestControllerIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/SitemapRestControllerIT.java @@ -14,8 +14,6 @@ import static org.springframework.test.web.servlet.result.MockMvcResultMatchers.content; import static org.springframework.test.web.servlet.result.MockMvcResultMatchers.status; -import javax.servlet.ServletException; - import org.dspace.app.rest.test.AbstractControllerIntegrationTest; import org.dspace.authorize.service.ResourcePolicyService; import org.dspace.builder.CollectionBuilder; @@ -131,18 +129,20 @@ public void testSitemap_notValidSiteMapFile() throws Exception { .andExpect(status().isNotFound()); } - @Test(expected = ServletException.class) + @Test public void testSitemap_fileSystemTraversal_dspaceCfg() throws Exception { //** WHEN ** //We attempt to use endpoint for malicious file system traversal - getClient().perform(get("/" + SITEMAPS_ENDPOINT + "/%2e%2e/config/dspace.cfg")); + getClient().perform(get("/" + SITEMAPS_ENDPOINT + "/%2e%2e/config/dspace.cfg")) + .andExpect(status().isBadRequest()); } - @Test(expected = ServletException.class) + @Test public void testSitemap_fileSystemTraversal_dspaceCfg2() throws Exception { //** WHEN ** //We attempt to use endpoint for malicious file system traversal - getClient().perform(get("/" + SITEMAPS_ENDPOINT + "/%2e%2e%2fconfig%2fdspace.cfg")); + getClient().perform(get("/" + SITEMAPS_ENDPOINT + "/%2e%2e%2fconfig%2fdspace.cfg")) + .andExpect(status().isBadRequest()); } @Test diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/StatisticsRestRepositoryIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/StatisticsRestRepositoryIT.java index adf2ea830613..7041879f844a 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/StatisticsRestRepositoryIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/StatisticsRestRepositoryIT.java @@ -238,13 +238,13 @@ public void usagereports_withoutId_NotImplementedException() throws Exception { @Test public void usagereports_notProperUUIDAndReportId_Exception() throws Exception { getClient(adminToken).perform(get("/api/statistics/usagereports/notProperUUIDAndReportId")) - .andExpect(status().is(HttpStatus.BAD_REQUEST.value())); + .andExpect(status().isNotFound()); } @Test public void usagereports_nonValidUUIDpart_Exception() throws Exception { getClient(adminToken).perform(get("/api/statistics/usagereports/notAnUUID" + "_" + TOTAL_VISITS_REPORT_ID)) - .andExpect(status().is(HttpStatus.BAD_REQUEST.value())); + .andExpect(status().isNotFound()); } @Test @@ -311,10 +311,9 @@ public void usagereport_loggedInUserReadRights() throws Exception { // ** WHEN ** context.turnOffAuthorisationSystem(); authorizeService.removeAllPolicies(context, itemNotVisitedWithBitstreams); - ResourcePolicyBuilder.createResourcePolicy(context) - .withDspaceObject(itemNotVisitedWithBitstreams) - .withAction(Constants.READ) - .withUser(eperson).build(); + ResourcePolicyBuilder.createResourcePolicy(context, eperson, null) + .withDspaceObject(itemNotVisitedWithBitstreams) + .withAction(Constants.READ).build(); EPerson eperson1 = EPersonBuilder.createEPerson(context) .withEmail("eperson1@mail.com") @@ -347,10 +346,9 @@ public void usagereport_loggedInUserReadRights_and_usage_statistics_admin_is_fal configurationService.setProperty("usage-statistics.authorization.admin.usage", false); context.turnOffAuthorisationSystem(); authorizeService.removeAllPolicies(context, itemNotVisitedWithBitstreams); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, eperson, null) .withDspaceObject(itemNotVisitedWithBitstreams) - .withAction(Constants.READ) - .withUser(eperson).build(); + .withAction(Constants.READ).build(); EPerson eperson1 = EPersonBuilder.createEPerson(context) .withEmail("eperson1@mail.com") @@ -974,17 +972,24 @@ public void TotalDownloadsReport_Item_NotVisited() throws Exception { // You don't visit an item's bitstreams // And request that item's TotalDownloads stat report getClient(adminToken).perform( - get("/api/statistics/usagereports/" + itemNotVisitedWithBitstreams.getID() + "_" + - TOTAL_DOWNLOADS_REPORT_ID)) - // ** THEN ** - .andExpect(status().isOk()) - .andExpect(jsonPath("$", Matchers.is( - UsageReportMatcher.matchUsageReport( - itemNotVisitedWithBitstreams.getID() + "_" + TOTAL_DOWNLOADS_REPORT_ID, - TOTAL_DOWNLOADS_REPORT_ID, - List.of() - ) - ))); + get("/api/statistics/usagereports/" + itemNotVisitedWithBitstreams.getID() + "_" + + TOTAL_DOWNLOADS_REPORT_ID)) + // ** THEN ** + .andExpect(status().isOk()) + .andExpect(jsonPath("$", Matchers.is( + UsageReportMatcher.matchUsageReport( + itemNotVisitedWithBitstreams.getID() + "_" + TOTAL_DOWNLOADS_REPORT_ID, + TOTAL_DOWNLOADS_REPORT_ID, + List.of() + ) + ))); + } + + @Test + public void TotalDownloadsReport_NotSupportedDSO_Collection() throws Exception { + getClient(adminToken) + .perform(get("/api/statistics/usagereports/" + collectionVisited.getID() + "_" + TOTAL_DOWNLOADS_REPORT_ID)) + .andExpect(status().isNotFound()); } /** @@ -1337,10 +1342,9 @@ public void usagereportSearch_loggedInUserReadRights() throws Exception { // ** WHEN ** context.turnOffAuthorisationSystem(); authorizeService.removeAllPolicies(context, itemNotVisitedWithBitstreams); - ResourcePolicyBuilder.createResourcePolicy(context) - .withDspaceObject(itemNotVisitedWithBitstreams) - .withAction(Constants.READ) - .withUser(eperson).build(); + ResourcePolicyBuilder.createResourcePolicy(context, eperson, null) + .withDspaceObject(itemNotVisitedWithBitstreams) + .withAction(Constants.READ).build(); EPerson eperson1 = EPersonBuilder.createEPerson(context) .withEmail("eperson1@mail.com") diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/SuggestionRestRepositoryIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/SuggestionRestRepositoryIT.java index aa8ad1de55b7..a3294fbda112 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/SuggestionRestRepositoryIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/SuggestionRestRepositoryIT.java @@ -406,6 +406,7 @@ public void acceptSuggestionTest() throws Exception { ObjectMapper mapper = new ObjectMapper(); MvcResult mvcResult = getClient(adminToken).perform( post("/api/submission/workspaceitems?owningCollection=" + colPublications.getID().toString()) + .param("embed", "item") .contentType(parseMediaType(TEXT_URI_LIST_VALUE)) .content("http://localhost/api/integration/externalsources/" + MockSuggestionExternalDataSource.NAME + "/entryValues/" + suggestionId)) @@ -415,7 +416,8 @@ public void acceptSuggestionTest() throws Exception { workspaceItemId = (Integer) map.get("id"); String itemUuidString = String.valueOf(((Map) ((Map) map.get("_embedded")).get("item")).get("uuid")); - getClient(adminToken).perform(get("/api/submission/workspaceitems/" + workspaceItemId)) + getClient(adminToken).perform(get("/api/submission/workspaceitems/" + workspaceItemId) + .param("embed", "item")) .andExpect(status().isOk()) .andExpect(jsonPath("$", Matchers.allOf( hasJsonPath("$.id", is(workspaceItemId)), diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/SupervisionOrderRestRepositoryIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/SupervisionOrderRestRepositoryIT.java index fbc707d6a491..1ff24b26025c 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/SupervisionOrderRestRepositoryIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/SupervisionOrderRestRepositoryIT.java @@ -25,8 +25,8 @@ import java.util.Objects; import java.util.concurrent.atomic.AtomicInteger; import java.util.concurrent.atomic.AtomicReference; -import javax.ws.rs.core.MediaType; +import jakarta.ws.rs.core.MediaType; import org.dspace.app.rest.matcher.WorkflowItemMatcher; import org.dspace.app.rest.matcher.WorkspaceItemMatcher; import org.dspace.app.rest.model.patch.ReplaceOperation; diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/TaskRestRepositoriesIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/TaskRestRepositoriesIT.java index 3a8480a2a7b2..d017703d6267 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/TaskRestRepositoriesIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/TaskRestRepositoriesIT.java @@ -2738,7 +2738,7 @@ public void unclaimedTaskTest_Patch_EditMetadataOptionAllowed() throws Exception getClient(authToken).perform(patch("/api/workflow/workflowitems/" + witem.getID()) .content(patchBody) - .contentType(javax.ws.rs.core.MediaType.APPLICATION_JSON_PATCH_JSON)) + .contentType(jakarta.ws.rs.core.MediaType.APPLICATION_JSON_PATCH_JSON)) .andExpect(status().isUnprocessableEntity()); } @@ -2892,7 +2892,7 @@ public void patchTest_ClaimedTask_EditMetadataOptionNotAllowed() throws Exceptio getClient(authToken).perform(patch("/api/workflow/workflowitems/" + witem.getID()) .content(patchBody) - .contentType(javax.ws.rs.core.MediaType.APPLICATION_JSON_PATCH_JSON)) + .contentType(jakarta.ws.rs.core.MediaType.APPLICATION_JSON_PATCH_JSON)) .andExpect(status().isUnprocessableEntity()); } diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/VersionRestRepositoryIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/VersionRestRepositoryIT.java index c3b0652079be..e152c49620cd 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/VersionRestRepositoryIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/VersionRestRepositoryIT.java @@ -1006,7 +1006,7 @@ public void patchReplaceSummaryTest() throws Exception { String adminToken = getAuthToken(admin.getEmail(), password); getClient(adminToken).perform(patch("/api/versioning/versions/" + v2.getID()) .content(patchBody) - .contentType(javax.ws.rs.core.MediaType.APPLICATION_JSON_PATCH_JSON)) + .contentType(jakarta.ws.rs.core.MediaType.APPLICATION_JSON_PATCH_JSON)) .andExpect(status().isOk()) .andExpect(jsonPath("$", Matchers.allOf( hasJsonPath("$.version", is(v2.getVersionNumber())), @@ -1054,7 +1054,7 @@ public void patchRemoveSummaryTest() throws Exception { String adminToken = getAuthToken(admin.getEmail(), password); getClient(adminToken).perform(patch("/api/versioning/versions/" + v2.getID()) .content(patchBody) - .contentType(javax.ws.rs.core.MediaType.APPLICATION_JSON_PATCH_JSON)) + .contentType(jakarta.ws.rs.core.MediaType.APPLICATION_JSON_PATCH_JSON)) .andExpect(status().isOk()) .andExpect(jsonPath("$", Matchers.allOf( hasJsonPath("$.version", is(v2.getVersionNumber())), @@ -1102,7 +1102,7 @@ public void patchAddSummaryTest() throws Exception { String adminToken = getAuthToken(admin.getEmail(), password); getClient(adminToken).perform(patch("/api/versioning/versions/" + v2.getID()) .content(patchBody) - .contentType(javax.ws.rs.core.MediaType.APPLICATION_JSON_PATCH_JSON)) + .contentType(jakarta.ws.rs.core.MediaType.APPLICATION_JSON_PATCH_JSON)) .andExpect(status().isOk()) .andExpect(jsonPath("$", Matchers.allOf( hasJsonPath("$.version", is(v2.getVersionNumber())), @@ -1129,7 +1129,7 @@ public void patchVersionNotFoundTest() throws Exception { String adminToken = getAuthToken(admin.getEmail(), password); getClient(adminToken).perform(patch("/api/versioning/versions/" + Integer.MAX_VALUE) .content(patchBody) - .contentType(javax.ws.rs.core.MediaType.APPLICATION_JSON_PATCH_JSON)) + .contentType(jakarta.ws.rs.core.MediaType.APPLICATION_JSON_PATCH_JSON)) .andExpect(status().isNotFound()); } @@ -1164,7 +1164,7 @@ public void patchAddSummaryBadRequestTest() throws Exception { String adminToken = getAuthToken(admin.getEmail(), password); getClient(adminToken).perform(patch("/api/versioning/versions/" + v2.getID()) .content(patchBody) - .contentType(javax.ws.rs.core.MediaType.APPLICATION_JSON_PATCH_JSON)) + .contentType(jakarta.ws.rs.core.MediaType.APPLICATION_JSON_PATCH_JSON)) .andExpect(status().isBadRequest()); } @@ -1199,7 +1199,7 @@ public void patchWrongPathUnprocessableEntityTest() throws Exception { String adminToken = getAuthToken(admin.getEmail(), password); getClient(adminToken).perform(patch("/api/versioning/versions/" + v2.getID()) .content(patchBody) - .contentType(javax.ws.rs.core.MediaType.APPLICATION_JSON_PATCH_JSON)) + .contentType(jakarta.ws.rs.core.MediaType.APPLICATION_JSON_PATCH_JSON)) .andExpect(status().isUnprocessableEntity()); } @@ -1234,7 +1234,7 @@ public void patchReplaceVersionUnprocessableEntityTest() throws Exception { String adminToken = getAuthToken(admin.getEmail(), password); getClient(adminToken).perform(patch("/api/versioning/versions/" + v2.getID()) .content(patchBody) - .contentType(javax.ws.rs.core.MediaType.APPLICATION_JSON_PATCH_JSON)) + .contentType(jakarta.ws.rs.core.MediaType.APPLICATION_JSON_PATCH_JSON)) .andExpect(status().isUnprocessableEntity()); } @@ -1270,7 +1270,7 @@ public void patchReplaceSummaryUnauthorizedTest() throws Exception { getClient().perform(patch("/api/versioning/versions/" + v2.getID()) .content(patchBody) - .contentType(javax.ws.rs.core.MediaType.APPLICATION_JSON_PATCH_JSON)) + .contentType(jakarta.ws.rs.core.MediaType.APPLICATION_JSON_PATCH_JSON)) .andExpect(status().isUnauthorized()); } @@ -1303,7 +1303,7 @@ public void patchRemoveSummaryUnauthorizedTest() throws Exception { getClient().perform(patch("/api/versioning/versions/" + v2.getID()) .content(patchBody) - .contentType(javax.ws.rs.core.MediaType.APPLICATION_JSON_PATCH_JSON)) + .contentType(jakarta.ws.rs.core.MediaType.APPLICATION_JSON_PATCH_JSON)) .andExpect(status().isUnauthorized()); } @@ -1337,7 +1337,7 @@ public void patchRemoveSummaryForbiddenTest() throws Exception { String epersonToken = getAuthToken(eperson.getEmail(), password); getClient(epersonToken).perform(patch("/api/versioning/versions/" + v2.getID()) .content(patchBody) - .contentType(javax.ws.rs.core.MediaType.APPLICATION_JSON_PATCH_JSON)) + .contentType(jakarta.ws.rs.core.MediaType.APPLICATION_JSON_PATCH_JSON)) .andExpect(status().isForbidden()); } @@ -1374,7 +1374,7 @@ public void patchReplaceSummaryByCollectionAdminTest() throws Exception { String colAdminToken = getAuthToken(eperson.getEmail(), password); getClient(colAdminToken).perform(patch("/api/versioning/versions/" + v2.getID()) .content(patchBody) - .contentType(javax.ws.rs.core.MediaType.APPLICATION_JSON_PATCH_JSON)) + .contentType(jakarta.ws.rs.core.MediaType.APPLICATION_JSON_PATCH_JSON)) .andExpect(status().isOk()) .andExpect(jsonPath("$", Matchers.allOf( hasJsonPath("$.version", is(v2.getVersionNumber())), @@ -1437,7 +1437,7 @@ public void patchReplaceSummaryByCommunityAdminTest() throws Exception { getClient(adminCommBToken).perform(patch("/api/versioning/versions/" + v2.getID()) .content(patchBody) - .contentType(javax.ws.rs.core.MediaType.APPLICATION_JSON_PATCH_JSON)) + .contentType(jakarta.ws.rs.core.MediaType.APPLICATION_JSON_PATCH_JSON)) .andExpect(status().isForbidden()); getClient(adminCommAToken).perform(get("/api/versioning/versions/" + v2.getID())) @@ -1446,7 +1446,7 @@ public void patchReplaceSummaryByCommunityAdminTest() throws Exception { getClient(adminCommAToken).perform(patch("/api/versioning/versions/" + v2.getID()) .content(patchBody) - .contentType(javax.ws.rs.core.MediaType.APPLICATION_JSON_PATCH_JSON)) + .contentType(jakarta.ws.rs.core.MediaType.APPLICATION_JSON_PATCH_JSON)) .andExpect(status().isOk()); getClient(adminCommAToken).perform(get("/api/versioning/versions/" + v2.getID())) @@ -1490,17 +1490,17 @@ public void patchReplaceSummaryWithVersioningDisabledTest() throws Exception { getClient(adminToken).perform(patch("/api/versioning/versions/" + Integer.MAX_VALUE) .content(patchBody) - .contentType(javax.ws.rs.core.MediaType.APPLICATION_JSON_PATCH_JSON)) + .contentType(jakarta.ws.rs.core.MediaType.APPLICATION_JSON_PATCH_JSON)) .andExpect(status().isForbidden()); getClient(epersonToken).perform(patch("/api/versioning/versions/" + Integer.MAX_VALUE) .content(patchBody) - .contentType(javax.ws.rs.core.MediaType.APPLICATION_JSON_PATCH_JSON)) + .contentType(jakarta.ws.rs.core.MediaType.APPLICATION_JSON_PATCH_JSON)) .andExpect(status().isForbidden()); getClient().perform(patch("/api/versioning/versions/" + Integer.MAX_VALUE) .content(patchBody) - .contentType(javax.ws.rs.core.MediaType.APPLICATION_JSON_PATCH_JSON)) + .contentType(jakarta.ws.rs.core.MediaType.APPLICATION_JSON_PATCH_JSON)) .andExpect(status().isUnauthorized()); } diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/VuFindImportMetadataSourceServiceIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/VuFindImportMetadataSourceServiceIT.java index c3063ca23459..76512272444d 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/VuFindImportMetadataSourceServiceIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/VuFindImportMetadataSourceServiceIT.java @@ -17,8 +17,8 @@ import java.util.Arrays; import java.util.Collection; import java.util.List; -import javax.el.MethodNotFoundException; +import jakarta.el.MethodNotFoundException; import org.apache.commons.io.IOUtils; import org.apache.http.client.methods.CloseableHttpResponse; import org.apache.http.impl.client.CloseableHttpClient; diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/WorkflowItemRestLinkRepositoryIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/WorkflowItemRestLinkRepositoryIT.java new file mode 100644 index 000000000000..7228a7ba0b9d --- /dev/null +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/WorkflowItemRestLinkRepositoryIT.java @@ -0,0 +1,226 @@ +/** + * The contents of this file are subject to the license and copyright + * detailed in the LICENSE and NOTICE files at the root of the source + * tree and available online at + * + * http://www.dspace.org/license/ + */ +package org.dspace.app.rest; + +import static org.springframework.test.web.servlet.request.MockMvcRequestBuilders.get; +import static org.springframework.test.web.servlet.result.MockMvcResultMatchers.jsonPath; +import static org.springframework.test.web.servlet.result.MockMvcResultMatchers.status; + +import com.jayway.jsonpath.matchers.JsonPathMatchers; +import org.dspace.app.rest.matcher.CollectionMatcher; +import org.dspace.app.rest.matcher.EPersonMatcher; +import org.dspace.app.rest.matcher.ItemMatcher; +import org.dspace.app.rest.matcher.WorkflowItemMatcher; +import org.dspace.app.rest.test.AbstractControllerIntegrationTest; +import org.dspace.builder.CollectionBuilder; +import org.dspace.builder.CommunityBuilder; +import org.dspace.builder.EPersonBuilder; +import org.dspace.builder.WorkflowItemBuilder; +import org.dspace.content.Collection; +import org.dspace.content.Community; +import org.dspace.eperson.EPerson; +import org.dspace.xmlworkflow.storedcomponents.XmlWorkflowItem; +import org.hamcrest.Matchers; +import org.junit.Test; + +/** + * Test suite for the WorkflowItem Link repositories + */ +public class WorkflowItemRestLinkRepositoryIT extends AbstractControllerIntegrationTest { + + @Test + /** + * The workflowitem resource endpoint must have an embeddable submitter + * + * @throws Exception + */ + public void findOneEmbedSubmitterTest() throws Exception { + context.turnOffAuthorisationSystem(); + + EPerson submitter = EPersonBuilder.createEPerson(context) + .withEmail("submitter@dspace.org") + .withNameInMetadata("Sub", "Mitter") + .build(); + + //** GIVEN ** + //1. A community-collection structure with one parent community with sub-community and two collections. + parentCommunity = CommunityBuilder.createCommunity(context) + .withName("Parent Community") + .build(); + Community child1 = CommunityBuilder.createSubCommunity(context, parentCommunity) + .withName("Sub Community") + .build(); + Collection col1 = CollectionBuilder.createCollection(context, child1) + .withName("Collection 1") + .withWorkflowGroup("reviewer", admin) + .build(); + + XmlWorkflowItem witem = WorkflowItemBuilder.createWorkflowItem(context, col1) + .withSubmitter(submitter) + .withTitle("Workflow Item 1") + .withIssueDate("2017-10-17") + .withAuthor("Smith, Donald").withAuthor("Doe, John") + .withSubject("ExtraEntry") + .build(); + + context.restoreAuthSystemState(); + + String authToken = getAuthToken(admin.getEmail(), password); + + getClient(authToken).perform(get("/api/workflow/workflowitems/" + witem.getID())).andExpect(status().isOk()) + .andExpect(jsonPath("$", Matchers.is( + WorkflowItemMatcher.matchItemWithTitleAndDateIssuedAndSubject(witem, + "Workflow Item 1", + "2017-10-17", + "ExtraEntry")))) + .andExpect(jsonPath("$", JsonPathMatchers.hasNoJsonPath("$._embedded.submitter"))); + + getClient(authToken).perform(get("/api/workflow/workflowitems/" + witem.getID()).param("embed", "submitter")) + .andExpect(status().isOk()) + .andExpect(jsonPath("$", Matchers.is( + WorkflowItemMatcher.matchItemWithTitleAndDateIssuedAndSubject(witem, + "Workflow Item 1", + "2017-10-17", + "ExtraEntry")))) + .andExpect(jsonPath("$._embedded.submitter", Matchers.is( + EPersonMatcher.matchEPersonEntry(submitter)))); + + getClient(authToken).perform(get("/api/workflow/workflowitems/" + witem.getID() + "/submitter")) + .andExpect(status().isOk()) + .andExpect(jsonPath("$", EPersonMatcher.matchEPersonEntry(submitter))); + + } + + @Test + /** + * The workflowitem resource endpoint must have an embeddable collection + * + * @throws Exception + */ + public void findOneEmbedCollectionTest() throws Exception { + context.turnOffAuthorisationSystem(); + + EPerson submitter = EPersonBuilder.createEPerson(context) + .withEmail("submitter@dspace.org") + .withNameInMetadata("Sub", "Mitter") + .build(); + + //** GIVEN ** + //1. A community-collection structure with one parent community with sub-community and two collections. + parentCommunity = CommunityBuilder.createCommunity(context) + .withName("Parent Community") + .build(); + Community child1 = CommunityBuilder.createSubCommunity(context, parentCommunity) + .withName("Sub Community") + .build(); + Collection col1 = CollectionBuilder.createCollection(context, child1) + .withName("Collection 1") + .withWorkflowGroup("reviewer", admin) + .build(); + + XmlWorkflowItem witem = WorkflowItemBuilder.createWorkflowItem(context, col1) + .withSubmitter(submitter) + .withTitle("Workflow Item 1") + .withIssueDate("2017-10-17") + .withAuthor("Smith, Donald").withAuthor("Doe, John") + .withSubject("ExtraEntry") + .build(); + + context.restoreAuthSystemState(); + + String authToken = getAuthToken(admin.getEmail(), password); + + getClient(authToken).perform(get("/api/workflow/workflowitems/" + witem.getID())).andExpect(status().isOk()) + .andExpect(jsonPath("$", Matchers.is( + WorkflowItemMatcher.matchItemWithTitleAndDateIssuedAndSubject(witem, + "Workflow Item 1", + "2017-10-17", + "ExtraEntry")))) + .andExpect(jsonPath("$", JsonPathMatchers.hasNoJsonPath("$._embedded.collection"))); + + getClient(authToken).perform(get("/api/workflow/workflowitems/" + witem.getID()).param("embed", "collection")) + .andExpect(status().isOk()) + .andExpect(jsonPath("$", Matchers.is( + WorkflowItemMatcher.matchItemWithTitleAndDateIssuedAndSubject(witem, + "Workflow Item 1", + "2017-10-17", + "ExtraEntry")))) + .andExpect(jsonPath("$._embedded.collection", Matchers.is( + CollectionMatcher.matchCollection(col1)))); + + getClient(authToken).perform(get("/api/workflow/workflowitems/" + witem.getID() + "/collection")) + .andExpect(status().isOk()) + .andExpect(jsonPath("$", CollectionMatcher.matchCollection(col1))); + + } + + @Test + /** + * The workflowitem resource endpoint must have an embeddable item + * + * @throws Exception + */ + public void findOneEmbedItemTest() throws Exception { + context.turnOffAuthorisationSystem(); + + EPerson submitter = EPersonBuilder.createEPerson(context) + .withEmail("submitter@dspace.org") + .withNameInMetadata("Sub", "Mitter") + .build(); + + //** GIVEN ** + //1. A community-collection structure with one parent community with sub-community and two collections. + parentCommunity = CommunityBuilder.createCommunity(context) + .withName("Parent Community") + .build(); + Community child1 = CommunityBuilder.createSubCommunity(context, parentCommunity) + .withName("Sub Community") + .build(); + Collection col1 = CollectionBuilder.createCollection(context, child1) + .withName("Collection 1") + .withWorkflowGroup("reviewer", admin) + .build(); + + XmlWorkflowItem witem = WorkflowItemBuilder.createWorkflowItem(context, col1) + .withSubmitter(submitter) + .withTitle("Workflow Item 1") + .withIssueDate("2017-10-17") + .withAuthor("Smith, Donald").withAuthor("Doe, John") + .withSubject("ExtraEntry") + .build(); + + context.restoreAuthSystemState(); + + String authToken = getAuthToken(admin.getEmail(), password); + + getClient(authToken).perform(get("/api/workflow/workflowitems/" + witem.getID())).andExpect(status().isOk()) + .andExpect(jsonPath("$", Matchers.is( + WorkflowItemMatcher.matchItemWithTitleAndDateIssuedAndSubject(witem, + "Workflow Item 1", + "2017-10-17", + "ExtraEntry")))) + .andExpect(jsonPath("$", JsonPathMatchers.hasNoJsonPath("$._embedded.item"))); + + getClient(authToken).perform(get("/api/workflow/workflowitems/" + witem.getID()).param("embed", "item")) + .andExpect(status().isOk()) + .andExpect(jsonPath("$", Matchers.is( + WorkflowItemMatcher.matchItemWithTitleAndDateIssuedAndSubject(witem, + "Workflow Item 1", + "2017-10-17", + "ExtraEntry")))) + .andExpect(jsonPath("$._embedded.item", Matchers.is( + ItemMatcher.matchItemProperties(witem.getItem())))); + + getClient(authToken).perform(get("/api/workflow/workflowitems/" + witem.getID() + "/item")) + .andExpect(status().isOk()) + .andExpect(jsonPath("$", ItemMatcher.matchItemProperties(witem.getItem()))); + + } + + +} diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/WorkflowItemRestRepositoryIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/WorkflowItemRestRepositoryIT.java index ea4ed736a12f..a2f0fabed424 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/WorkflowItemRestRepositoryIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/WorkflowItemRestRepositoryIT.java @@ -37,8 +37,8 @@ import java.util.Map; import java.util.UUID; import java.util.concurrent.atomic.AtomicReference; -import javax.ws.rs.core.MediaType; +import jakarta.ws.rs.core.MediaType; import org.apache.commons.io.IOUtils; import org.dspace.app.rest.matcher.CollectionMatcher; import org.dspace.app.rest.matcher.ItemMatcher; diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/WorkspaceItemRestLinkRepositoryIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/WorkspaceItemRestLinkRepositoryIT.java new file mode 100644 index 000000000000..709480e8cd52 --- /dev/null +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/WorkspaceItemRestLinkRepositoryIT.java @@ -0,0 +1,222 @@ +/** + * The contents of this file are subject to the license and copyright + * detailed in the LICENSE and NOTICE files at the root of the source + * tree and available online at + * + * http://www.dspace.org/license/ + */ +package org.dspace.app.rest; + +import static org.springframework.test.web.servlet.request.MockMvcRequestBuilders.get; +import static org.springframework.test.web.servlet.result.MockMvcResultMatchers.jsonPath; +import static org.springframework.test.web.servlet.result.MockMvcResultMatchers.status; + +import com.jayway.jsonpath.matchers.JsonPathMatchers; +import org.dspace.app.rest.matcher.CollectionMatcher; +import org.dspace.app.rest.matcher.EPersonMatcher; +import org.dspace.app.rest.matcher.ItemMatcher; +import org.dspace.app.rest.matcher.WorkspaceItemMatcher; +import org.dspace.app.rest.test.AbstractControllerIntegrationTest; +import org.dspace.builder.CollectionBuilder; +import org.dspace.builder.CommunityBuilder; +import org.dspace.builder.EPersonBuilder; +import org.dspace.builder.WorkspaceItemBuilder; +import org.dspace.content.Collection; +import org.dspace.content.Community; +import org.dspace.content.WorkspaceItem; +import org.dspace.eperson.EPerson; +import org.hamcrest.Matchers; +import org.junit.Test; + +/** + * Test suite for the WorkspaceItem Link repositories + */ +public class WorkspaceItemRestLinkRepositoryIT extends AbstractControllerIntegrationTest { + + + @Test + /** + * The workspaceitem resource endpoint must have an embeddable submitter + * + * @throws Exception + */ + public void findOneEmbedSubmitterTest() throws Exception { + context.turnOffAuthorisationSystem(); + + EPerson submitter = EPersonBuilder.createEPerson(context) + .withEmail("submitter@dspace.org") + .withNameInMetadata("Sub", "Mitter") + .build(); + + //** GIVEN ** + //1. A community-collection structure with one parent community with sub-community and two collections. + parentCommunity = CommunityBuilder.createCommunity(context) + .withName("Parent Community") + .build(); + Community child1 = CommunityBuilder.createSubCommunity(context, parentCommunity) + .withName("Sub Community") + .build(); + Collection col1 = CollectionBuilder.createCollection(context, child1).withName("Collection 1").build(); + + //2. a workspace item + WorkspaceItem witem = WorkspaceItemBuilder.createWorkspaceItem(context, col1) + .withSubmitter(submitter) + .withTitle("Workspace Item 1") + .withIssueDate("2017-10-17") + .withAuthor("Smith, Donald").withAuthor("Doe, John") + .withSubject("ExtraEntry") + .build(); + + context.restoreAuthSystemState(); + + String authToken = getAuthToken(admin.getEmail(), password); + + getClient(authToken).perform(get("/api/submission/workspaceitems/" + witem.getID())).andExpect(status().isOk()) + .andExpect(jsonPath("$", Matchers.is( + WorkspaceItemMatcher.matchItemWithTitleAndDateIssuedAndSubject(witem, + "Workspace Item 1", + "2017-10-17", + "ExtraEntry")))) + .andExpect(jsonPath("$", JsonPathMatchers.hasNoJsonPath("$._embedded.submitter"))); + + getClient(authToken).perform(get("/api/submission/workspaceitems/" + witem.getID()).param("embed", "submitter")) + .andExpect(status().isOk()) + .andExpect(jsonPath("$", Matchers.is( + WorkspaceItemMatcher.matchItemWithTitleAndDateIssuedAndSubject(witem, + "Workspace Item 1", + "2017-10-17", + "ExtraEntry")))) + .andExpect(jsonPath("$._embedded.submitter", Matchers.is( + EPersonMatcher.matchEPersonEntry(submitter)))); + + getClient(authToken).perform(get("/api/submission/workspaceitems/" + witem.getID() + "/submitter")) + .andExpect(status().isOk()) + .andExpect(jsonPath("$", EPersonMatcher.matchEPersonEntry(submitter))); + + } + + @Test + /** + * The workspaceitem resource endpoint must have an embeddable collection + * + * @throws Exception + */ + public void findOneEmbedCollectionTest() throws Exception { + context.turnOffAuthorisationSystem(); + + EPerson submitter = EPersonBuilder.createEPerson(context) + .withEmail("submitter@dspace.org") + .withNameInMetadata("Sub", "Mitter") + .build(); + + //** GIVEN ** + //1. A community-collection structure with one parent community with sub-community and two collections. + parentCommunity = CommunityBuilder.createCommunity(context) + .withName("Parent Community") + .build(); + Community child1 = CommunityBuilder.createSubCommunity(context, parentCommunity) + .withName("Sub Community") + .build(); + Collection col1 = CollectionBuilder.createCollection(context, child1).withName("Collection 1").build(); + + //2. a workspace item + WorkspaceItem witem = WorkspaceItemBuilder.createWorkspaceItem(context, col1) + .withSubmitter(submitter) + .withTitle("Workspace Item 1") + .withIssueDate("2017-10-17") + .withAuthor("Smith, Donald").withAuthor("Doe, John") + .withSubject("ExtraEntry") + .build(); + + context.restoreAuthSystemState(); + + String authToken = getAuthToken(admin.getEmail(), password); + + getClient(authToken).perform(get("/api/submission/workspaceitems/" + witem.getID())).andExpect(status().isOk()) + .andExpect(jsonPath("$", Matchers.is( + WorkspaceItemMatcher.matchItemWithTitleAndDateIssuedAndSubject(witem, + "Workspace Item 1", + "2017-10-17", + "ExtraEntry")))) + .andExpect(jsonPath("$", JsonPathMatchers.hasNoJsonPath("$._embedded.collection"))); + + getClient(authToken).perform( + get("/api/submission/workspaceitems/" + witem.getID()).param("embed", "collection")) + .andExpect(status().isOk()) + .andExpect(jsonPath("$", Matchers.is( + WorkspaceItemMatcher.matchItemWithTitleAndDateIssuedAndSubject(witem, + "Workspace Item 1", + "2017-10-17", + "ExtraEntry")))) + .andExpect(jsonPath("$._embedded.collection", Matchers.is( + CollectionMatcher.matchCollection(col1)))); + + getClient(authToken).perform(get("/api/submission/workspaceitems/" + witem.getID() + "/collection")) + .andExpect(status().isOk()) + .andExpect(jsonPath("$", CollectionMatcher.matchCollection(col1))); + + } + + @Test + /** + * The workspaceitem resource endpoint must have an embeddable item + * + * @throws Exception + */ + public void findOneEmbedItemTest() throws Exception { + context.turnOffAuthorisationSystem(); + + EPerson submitter = EPersonBuilder.createEPerson(context) + .withEmail("submitter@dspace.org") + .withNameInMetadata("Sub", "Mitter") + .build(); + + //** GIVEN ** + //1. A community-collection structure with one parent community with sub-community and two collections. + parentCommunity = CommunityBuilder.createCommunity(context) + .withName("Parent Community") + .build(); + Community child1 = CommunityBuilder.createSubCommunity(context, parentCommunity) + .withName("Sub Community") + .build(); + Collection col1 = CollectionBuilder.createCollection(context, child1).withName("Collection 1").build(); + + //2. a workspace item + WorkspaceItem witem = WorkspaceItemBuilder.createWorkspaceItem(context, col1) + .withSubmitter(submitter) + .withTitle("Workspace Item 1") + .withIssueDate("2017-10-17") + .withAuthor("Smith, Donald").withAuthor("Doe, John") + .withSubject("ExtraEntry") + .build(); + + context.restoreAuthSystemState(); + + String authToken = getAuthToken(admin.getEmail(), password); + + getClient(authToken).perform(get("/api/submission/workspaceitems/" + witem.getID())).andExpect(status().isOk()) + .andExpect(jsonPath("$", Matchers.is( + WorkspaceItemMatcher.matchItemWithTitleAndDateIssuedAndSubject(witem, + "Workspace Item 1", + "2017-10-17", + "ExtraEntry")))) + .andExpect(jsonPath("$", JsonPathMatchers.hasNoJsonPath("$._embedded.item"))); + + getClient(authToken).perform(get("/api/submission/workspaceitems/" + witem.getID()).param("embed", "item")) + .andExpect(status().isOk()) + .andExpect(jsonPath("$", Matchers.is( + WorkspaceItemMatcher.matchItemWithTitleAndDateIssuedAndSubject(witem, + "Workspace Item 1", + "2017-10-17", + "ExtraEntry")))) + .andExpect(jsonPath("$._embedded.item", Matchers.is( + ItemMatcher.matchItemProperties(witem.getItem())))); + + getClient(authToken).perform(get("/api/submission/workspaceitems/" + witem.getID() + "/item")) + .andExpect(status().isOk()) + .andExpect(jsonPath("$", ItemMatcher.matchItemProperties(witem.getItem()))); + + } + + +} diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/WorkspaceItemRestRepositoryIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/WorkspaceItemRestRepositoryIT.java index a478dbdfebca..410f2588287e 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/WorkspaceItemRestRepositoryIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/WorkspaceItemRestRepositoryIT.java @@ -55,10 +55,10 @@ import java.util.Set; import java.util.UUID; import java.util.concurrent.atomic.AtomicReference; -import javax.ws.rs.core.MediaType; import com.fasterxml.jackson.databind.ObjectMapper; import com.jayway.jsonpath.matchers.JsonPathMatchers; +import jakarta.ws.rs.core.MediaType; import org.apache.commons.io.IOUtils; import org.apache.commons.lang3.StringUtils; import org.apache.commons.lang3.time.DateUtils; @@ -185,6 +185,8 @@ public class WorkspaceItemRestRepositoryIT extends AbstractControllerIntegration private Group embargoedGroup1; private Group embargoedGroup2; private Group anonymousGroup; + private Group adminGroup; + private EntityType publicationType; private EntityType journalType; private EntityType orgUnitType; @@ -211,6 +213,8 @@ public void setUp() throws Exception { .build(); anonymousGroup = EPersonServiceFactory.getInstance().getGroupService().findByName(context, Group.ANONYMOUS); + adminGroup = EPersonServiceFactory.getInstance().getGroupService().findByName(context, Group.ADMIN); + publicationType = entityTypeService.findByEntityType(context, "Publication"); if (publicationType == null) { publicationType = EntityTypeBuilder.createEntityTypeBuilder(context, "Publication").build(); @@ -223,6 +227,7 @@ public void setUp() throws Exception { if (orgUnitType == null) { orgUnitType = EntityTypeBuilder.createEntityTypeBuilder(context, "OrgUnit").build(); } + context.restoreAuthSystemState(); } @@ -957,6 +962,7 @@ public void createEmptyWorkspateItemTest() throws Exception { // create a workspaceitem explicitly in the col1 getClient(authToken).perform(post("/api/submission/workspaceitems") .param("owningCollection", col1.getID().toString()) + .param("embed", "collection") .contentType(org.springframework.http.MediaType.APPLICATION_JSON)) .andExpect(status().isCreated()) .andExpect(jsonPath("$._embedded.collection.id", is(col1.getID().toString()))) @@ -965,6 +971,7 @@ public void createEmptyWorkspateItemTest() throws Exception { // create a workspaceitem explicitly in the col2 getClient(authToken).perform(post("/api/submission/workspaceitems") .param("owningCollection", col2.getID().toString()) + .param("embed", "collection") .contentType(org.springframework.http.MediaType.APPLICATION_JSON)) .andExpect(status().isCreated()) .andExpect(jsonPath("$._embedded.collection.id", is(col2.getID().toString()))) @@ -973,10 +980,10 @@ public void createEmptyWorkspateItemTest() throws Exception { // create a workspaceitem without an explicit collection, this will go in the first valid collection for the // user: the col1 getClient(authToken).perform(post("/api/submission/workspaceitems") + .param("embed", "collection") .contentType(org.springframework.http.MediaType.APPLICATION_JSON)) .andExpect(status().isCreated()) .andExpect(jsonPath("$._embedded.collection.id", is(col1.getID().toString()))) - .andExpect(jsonPath("$", WorkspaceItemMatcher.matchFullEmbeds())) .andDo(result -> idRef3.set(read(result.getResponse().getContentAsString(), "$.id"))); @@ -1028,7 +1035,8 @@ public void createSingleWorkspaceItemFromBibtexFileWithOneEntryTest() throws Exc try { // create a workspaceitem from a single bibliographic entry file explicitly in the default collection (col1) getClient(authToken).perform(multipart("/api/submission/workspaceitems") - .file(bibtexFile)) + .file(bibtexFile) + .param("embed", "collection")) // create should return 200, 201 (created) is better for single resource .andExpect(status().isOk()) .andExpect(jsonPath("$._embedded.workspaceitems[0].sections.traditionalpageone['dc.title'][0].value", @@ -1057,6 +1065,7 @@ public void createSingleWorkspaceItemFromBibtexFileWithOneEntryTest() throws Exc try { getClient(authToken).perform(multipart("/api/submission/workspaceitems") .file(bibtexFile) + .param("embed", "collection") .param("owningCollection", col2.getID().toString())) .andExpect(status().isOk()) .andExpect(jsonPath("$._embedded.workspaceitems[0].sections.traditionalpageone['dc.title'][0].value", @@ -1122,7 +1131,8 @@ public void createSingleWorkspaceItemFromBibtexArticleFileWithOneEntryTest() thr try { // create a workspaceitem from a single bibliographic entry file explicitly in the default collection (col1) getClient(authToken).perform(multipart("/api/submission/workspaceitems") - .file(bibtexFile)) + .file(bibtexFile) + .param("embed", "collection")) // create should return 200, 201 (created) is better for single resource .andExpect(status().isOk()) .andExpect(jsonPath("$._embedded.workspaceitems[0]" + @@ -1156,6 +1166,7 @@ public void createSingleWorkspaceItemFromBibtexArticleFileWithOneEntryTest() thr try { getClient(authToken).perform(multipart("/api/submission/workspaceitems") .file(bibtexFile) + .param("embed", "collection") .param("owningCollection", col2.getID().toString())) .andExpect(status().isOk()) .andExpect(jsonPath("$._embedded.workspaceitems[0]" + @@ -1221,7 +1232,8 @@ public void createSingleWorkspaceItemFromBibtexFileWithDiacriticsTest() throws E try { // create a workspaceitem from a single bibliographic entry file explicitly in the default collection (col1) getClient(authToken).perform(multipart("/api/submission/workspaceitems") - .file(bibtexFile)) + .file(bibtexFile) + .param("embed", "collection")) // create should return 200, 201 (created) is better for single resource .andExpect(status().isOk()) .andExpect(jsonPath("$._embedded.workspaceitems[0].sections." + @@ -1252,6 +1264,7 @@ public void createSingleWorkspaceItemFromBibtexFileWithDiacriticsTest() throws E try { getClient(authToken).perform(multipart("/api/submission/workspaceitems") .file(bibtexFile) + .param("embed", "collection") .param("owningCollection", col2.getID().toString())) .andExpect(status().isOk()) .andExpect(jsonPath("$._embedded.workspaceitems[0].sections." + @@ -1320,7 +1333,8 @@ public void createSingleWorkspaceItemFromBibtexFileWithMultipleAuthorsTest() thr try { // create a workspaceitem from a single bibliographic entry file explicitly in the default collection (col1) getClient(authToken).perform(multipart("/api/submission/workspaceitems") - .file(bibtexFile)) + .file(bibtexFile) + .param("embed", "collection")) // create should return 200, 201 (created) is better for single resource .andExpect(status().isOk()) .andExpect(jsonPath("$._embedded.workspaceitems[0]" + @@ -1360,6 +1374,7 @@ public void createSingleWorkspaceItemFromBibtexFileWithMultipleAuthorsTest() thr try { getClient(authToken).perform(multipart("/api/submission/workspaceitems") .file(bibtexFile) + .param("embed", "collection") .param("owningCollection", col2.getID().toString())) .andExpect(status().isOk()) .andExpect(jsonPath("$._embedded.workspaceitems[0]" + @@ -1429,7 +1444,8 @@ public void createSingleWorkspaceItemFromCSVWithOneEntryTest() throws Exception AtomicReference> idRef = new AtomicReference<>(); try { getClient(authToken).perform(multipart("/api/submission/workspaceitems") - .file(csvFile)) + .file(csvFile) + .param("embed", "collection")) // create should return 200, 201 (created) is better for single resource .andExpect(status().isOk()) .andExpect(jsonPath("$._embedded.workspaceitems[0].sections.traditionalpageone['dc.title'][0].value", @@ -1469,6 +1485,7 @@ public void createSingleWorkspaceItemFromCSVWithOneEntryTest() throws Exception try { getClient(authToken).perform(multipart("/api/submission/workspaceitems") .file(csvFile) + .param("embed", "collection") .param("owningCollection", col2.getID().toString())) .andExpect(status().isOk()) .andExpect(jsonPath("$._embedded.workspaceitems[0].sections.traditionalpageone" @@ -1550,7 +1567,8 @@ public void createSingleWorkspaceItemFromCSVWithOneEntryAndMissingDataTest() thr try { getClient(authToken).perform(multipart("/api/submission/workspaceitems") - .file(csvFile)) + .file(csvFile) + .param("embed", "collection")) // create should return 200, 201 (created) is better for single resource .andExpect(status().isOk()) .andExpect(jsonPath("$._embedded.workspaceitems[0].sections.traditionalpageone['dc.title'][0].value", @@ -1632,7 +1650,8 @@ public void createSingleWorkspaceItemFromTSVWithOneEntryTest() throws Exception // create workspaceitems in the default collection (col1) try { getClient(authToken).perform(multipart("/api/submission/workspaceitems") - .file(tsvFile)) + .file(tsvFile) + .param("embed", "collection")) // create should return 200, 201 (created) is better for single resource .andExpect(status().isOk()) .andExpect(jsonPath("$._embedded.workspaceitems[0].sections.traditionalpageone['dc.title'][0].value", @@ -1712,7 +1731,8 @@ public void createSingleWorkspaceItemFromRISWithOneEntryTest() throws Exception // create workspaceitems in the default collection (col1) try { getClient(authToken).perform(multipart("/api/submission/workspaceitems") - .file(tsvFile)) + .file(tsvFile) + .param("embed", "collection")) // create should return 200, 201 (created) is better for single resource .andExpect(status().isOk()) .andExpect(jsonPath("$._embedded.workspaceitems[0].sections.traditionalpageone['dc.title'][0].value", @@ -1793,7 +1813,8 @@ public void createSingleWorkspaceItemFromEndnoteWithOneEntryTest() throws Except // create workspaceitems in the default collection (col1) try { getClient(authToken).perform(multipart("/api/submission/workspaceitems") - .file(endnoteFile)) + .file(endnoteFile) + .param("embed", "collection")) // create should return 200, 201 (created) is better for single resource .andExpect(status().isOk()) .andExpect(jsonPath("$._embedded.workspaceitems[0].sections.traditionalpageone['dc.title'][0].value", @@ -1876,7 +1897,8 @@ public void createSingleWorkspaceItemFromTSVWithOneEntryAndMissingDataTest() thr // create workspaceitems in the default collection (col1) try { getClient(authToken).perform(multipart("/api/submission/workspaceitems") - .file(csvFile)) + .file(csvFile) + .param("embed", "collection")) // create should return 200, 201 (created) is better for single resource .andExpect(status().isOk()) .andExpect(jsonPath("$._embedded.workspaceitems[0].sections.traditionalpageone['dc.title'][0].value", @@ -1961,7 +1983,9 @@ public void createSingleWorkspaceItemFromMultipleFilesWithOneEntryTest() throws // create a workspaceitem from a single bibliographic entry file explicitly in the default collection (col1) try { getClient(authToken).perform(multipart("/api/submission/workspaceitems") - .file(bibtexFile).file(pubmedFile)) + .file(bibtexFile) + .file(pubmedFile) + .param("embed", "collection")) // create should return 200, 201 (created) is better for single resource .andExpect(status().isOk()) .andExpect(jsonPath("$._embedded.workspaceitems[0].sections.traditionalpageone['dc.title'][0].value", @@ -1996,6 +2020,7 @@ public void createSingleWorkspaceItemFromMultipleFilesWithOneEntryTest() throws try { getClient(authToken).perform(multipart("/api/submission/workspaceitems") .file(bibtexFile).file(pubmedFile) + .param("embed", "collection") .param("owningCollection", col2.getID().toString())) .andExpect(status().isOk()) .andExpect(jsonPath("$._embedded.workspaceitems[0].sections.traditionalpageone['dc.title'][0].value", @@ -5258,6 +5283,7 @@ public void createWorkspaceItemFromExternalSources() throws Exception { String token = getAuthToken(admin.getEmail(), password); MvcResult mvcResult = getClient(token).perform(post("/api/submission/workspaceitems?owningCollection=" + col1.getID().toString()) + .param("embed", "item") .contentType(parseMediaType(TEXT_URI_LIST_VALUE)) .content("https://localhost:8080/server/api/integration/" + "externalsources/mock/entryValues/one")) @@ -5268,7 +5294,8 @@ public void createWorkspaceItemFromExternalSources() throws Exception { workspaceItemId = (Integer) map.get("id"); String itemUuidString = String.valueOf(((Map) ((Map) map.get("_embedded")).get("item")).get("uuid")); - getClient(token).perform(get("/api/submission/workspaceitems/" + workspaceItemId)) + getClient(token).perform(get("/api/submission/workspaceitems/" + workspaceItemId) + .param("embed", "item")) .andExpect(status().isOk()) .andExpect(jsonPath("$", Matchers.allOf( hasJsonPath("$.id", is(workspaceItemId)), @@ -5463,6 +5490,7 @@ public void createWorkspaceItemFromExternalSourcesNonAdminWithPermission() throw String token = getAuthToken(eperson.getEmail(), password); getClient(token).perform(post("/api/submission/workspaceitems") + .param("embed", "collection") .param("owningCollection", col1.getID().toString()) .contentType(parseMediaType(TEXT_URI_LIST_VALUE)) .content("https://localhost:8080/server/api/integration/externalsources/" + @@ -5472,7 +5500,9 @@ public void createWorkspaceItemFromExternalSourcesNonAdminWithPermission() throw .andDo(result -> idRef.set(read(result.getResponse().getContentAsString(), "$.id"))); workspaceItemId = idRef.get(); - getClient(token).perform(get("/api/submission/workspaceitems/" + workspaceItemId)) + getClient(token).perform(get("/api/submission/workspaceitems/" + workspaceItemId) + .param("embed", "collection") + .param("embed", "item")) .andExpect(status().isOk()) .andExpect(jsonPath("$", Matchers.allOf( hasJsonPath("$.id", is(workspaceItemId)), @@ -8171,13 +8201,12 @@ public void patchAccesConditionDiscoverableTest() throws Exception { .build(); witem.getItem().setDiscoverable(false); - ResourcePolicyBuilder.createResourcePolicy(context) - .withDspaceObject(witem.getItem()) + ResourcePolicyBuilder.createResourcePolicy(context, null, adminGroup).withDspaceObject(witem.getItem()) .withPolicyType(TYPE_CUSTOM) .withName("administrator") .build(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, null, anonymousGroup) .withDspaceObject(witem.getItem()) .withPolicyType(TYPE_CUSTOM) .withName("openaccess") @@ -8231,7 +8260,7 @@ public void patchAccesConditionDiscoverableWrongValueTest() throws Exception { .withSubject("ExtraEntry") .build(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, null, anonymousGroup) .withDspaceObject(witem.getItem()) .withPolicyType(TYPE_CUSTOM) .withName("openaccess") @@ -8278,7 +8307,7 @@ public void patcDiscoverableWithAccesConditionConfigurationDiscoverableDisabledT .withSubject("ExtraEntry") .build(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, null, anonymousGroup) .withDspaceObject(witem.getItem()) .withPolicyType(TYPE_CUSTOM) .withName("openaccess") @@ -8331,7 +8360,7 @@ public void patchAddAccesConditionTest() throws Exception { .withSubject("ExtraEntry") .build(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, null, anonymousGroup) .withDspaceObject(witem.getItem()) .withPolicyType(TYPE_CUSTOM) .withName("openaccess") @@ -8389,7 +8418,7 @@ public void patchAddNotSupportedAccesConditionTest() throws Exception { .withSubject("ExtraEntry") .build(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, null, anonymousGroup) .withDspaceObject(witem.getItem()) .withPolicyType(TYPE_CUSTOM) .withName("openaccess") @@ -8504,13 +8533,13 @@ public void patchRemoveAllAccesConditionsTest() throws Exception { .withSubject("ExtraEntry") .build(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, null, anonymousGroup) .withDspaceObject(witem.getItem()) .withPolicyType(TYPE_CUSTOM) .withName("openaccess") .build(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, null, adminGroup) .withDspaceObject(witem.getItem()) .withPolicyType(TYPE_CUSTOM) .withName("administrator") @@ -8564,17 +8593,17 @@ public void patchRemoveSpecificAccesConditionsTest() throws Exception { .withSubject("ExtraEntry") .build(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, null, anonymousGroup) .withDspaceObject(witem.getItem()) .withPolicyType(TYPE_CUSTOM) .withName("openaccess") .build(); - ResourcePolicyBuilder.createResourcePolicy(context) - .withDspaceObject(witem.getItem()) - .withPolicyType(TYPE_CUSTOM) - .withName("administrator") - .build(); +ResourcePolicyBuilder.createResourcePolicy(context, null, adminGroup) + .withDspaceObject(witem.getItem()) + .withPolicyType(TYPE_CUSTOM) + .withName("administrator") + .build(); Calendar calendar = Calendar.getInstance(); @@ -8584,7 +8613,7 @@ public void patchRemoveSpecificAccesConditionsTest() throws Exception { Date data = calendar.getTime(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, null, embargoedGroup1) .withDspaceObject(witem.getItem()) .withPolicyType(TYPE_CUSTOM) .withName("embargoed") @@ -8646,17 +8675,17 @@ public void patchRemoveFirstAccesConditionsTest() throws Exception { .withSubject("ExtraEntry") .build(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, null, anonymousGroup) .withDspaceObject(witem.getItem()) .withPolicyType(TYPE_CUSTOM) .withName("openaccess") .build(); - ResourcePolicyBuilder.createResourcePolicy(context) - .withDspaceObject(witem.getItem()) - .withPolicyType(TYPE_CUSTOM) - .withName("administrator") - .build(); +ResourcePolicyBuilder.createResourcePolicy(context, null, adminGroup) + .withDspaceObject(witem.getItem()) + .withPolicyType(TYPE_CUSTOM) + .withName("administrator") + .build(); context.restoreAuthSystemState(); @@ -8709,17 +8738,17 @@ public void patchRemoveAccesConditionsIdxNotSupportedTest() throws Exception { .withSubject("ExtraEntry") .build(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, null, anonymousGroup) .withDspaceObject(witem.getItem()) .withPolicyType(TYPE_CUSTOM) .withName("openaccess") .build(); - ResourcePolicyBuilder.createResourcePolicy(context) - .withDspaceObject(witem.getItem()) - .withPolicyType(TYPE_CUSTOM) - .withName("administrator") - .build(); +ResourcePolicyBuilder.createResourcePolicy(context, null, adminGroup) + .withDspaceObject(witem.getItem()) + .withPolicyType(TYPE_CUSTOM) + .withName("administrator") + .build(); context.restoreAuthSystemState(); @@ -8774,17 +8803,17 @@ public void patchRemoveAccesConditionsUnprocessableEntityTest() throws Exception .withSubject("ExtraEntry") .build(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, null, anonymousGroup) .withDspaceObject(witem.getItem()) .withPolicyType(TYPE_CUSTOM) .withName("openaccess") .build(); - ResourcePolicyBuilder.createResourcePolicy(context) - .withDspaceObject(witem.getItem()) - .withPolicyType(TYPE_CUSTOM) - .withName("administrator") - .build(); +ResourcePolicyBuilder.createResourcePolicy(context, null, adminGroup) + .withDspaceObject(witem.getItem()) + .withPolicyType(TYPE_CUSTOM) + .withName("administrator") + .build(); context.restoreAuthSystemState(); @@ -8839,17 +8868,17 @@ public void patchReplaceAccesConditionTest() throws Exception { .withSubject("ExtraEntry") .build(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, null, anonymousGroup) .withDspaceObject(witem.getItem()) .withPolicyType(TYPE_CUSTOM) .withName("openaccess") .build(); - ResourcePolicyBuilder.createResourcePolicy(context) - .withDspaceObject(witem.getItem()) - .withPolicyType(TYPE_CUSTOM) - .withName("administrator") - .build(); +ResourcePolicyBuilder.createResourcePolicy(context, null, adminGroup) + .withDspaceObject(witem.getItem()) + .withPolicyType(TYPE_CUSTOM) + .withName("administrator") + .build(); context.restoreAuthSystemState(); @@ -8909,7 +8938,7 @@ public void patchReplaceAccesConditionsUpdateEmbargoStartDateTest() throws Excep .withSubject("ExtraEntry") .build(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, null, anonymousGroup) .withDspaceObject(witem.getItem()) .withPolicyType(TYPE_CUSTOM) .withName("openaccess") @@ -8923,7 +8952,7 @@ public void patchReplaceAccesConditionsUpdateEmbargoStartDateTest() throws Excep Date data = calendar.getTime(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, null, embargoedGroup1) .withDspaceObject(witem.getItem()) .withPolicyType(TYPE_CUSTOM) .withName("embargo") @@ -8989,7 +9018,7 @@ public void patchReplaceAccesConditionsFromOpenaccessToAdministratorTest() throw .withSubject("ExtraEntry") .build(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, null, anonymousGroup) .withDspaceObject(witem.getItem()) .withPolicyType(TYPE_CUSTOM) .withName("openaccess") @@ -10338,18 +10367,17 @@ public void testSubmissionWithCOARNotifyServicesSection() throws Exception { // create three notify services NotifyServiceEntity notifyServiceOne = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name one") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name one") .withLdnUrl("https://service.ldn.org/inbox") .build(); NotifyServiceEntity notifyServiceTwo = - NotifyServiceBuilder.createNotifyServiceBuilder(context).withName("service name two") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name two") .withLdnUrl("https://service2.ldn.org/inbox") .build(); NotifyServiceEntity notifyServiceThree = - NotifyServiceBuilder.createNotifyServiceBuilder(context).withName("service name three") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name three") .withLdnUrl("https://service3.ldn.org/inbox") .build(); @@ -10392,18 +10420,17 @@ public void patchCOARNotifyServiceAddTest() throws Exception { NotifyServiceEntity notifyServiceOne = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name one") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name one") .withLdnUrl("https://service.ldn.org/inbox") .build(); NotifyServiceEntity notifyServiceTwo = - NotifyServiceBuilder.createNotifyServiceBuilder(context).withName("service name two") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name two") .withLdnUrl("https://service2.ldn.org/inbox") .build(); NotifyServiceEntity notifyServiceThree = - NotifyServiceBuilder.createNotifyServiceBuilder(context).withName("service name three") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name three") .withLdnUrl("https://service3.ldn.org/inbox") .build(); @@ -10471,18 +10498,17 @@ public void patchCOARNotifyServiceAddWithInCompatibleServicesTest() throws Excep NotifyServiceEntity notifyServiceOne = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name one") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name one") .withLdnUrl("https://service.ldn.org/inbox") .build(); NotifyServiceEntity notifyServiceTwo = - NotifyServiceBuilder.createNotifyServiceBuilder(context).withName("service name two") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name two") .withLdnUrl("https://service2.ldn.org/inbox") .build(); NotifyServiceEntity notifyServiceThree = - NotifyServiceBuilder.createNotifyServiceBuilder(context).withName("service name three") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name three") .withLdnUrl("https://service3.ldn.org/inbox") .build(); @@ -10534,8 +10560,7 @@ public void patchCOARNotifyServiceAddWithInvalidPatternTest() throws Exception { NotifyServiceEntity notifyServiceOne = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name one") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name one") .withLdnUrl("https://service.ldn.org/inbox") .build(); @@ -10577,8 +10602,7 @@ public void patchCOARNotifyServiceAddWithInvalidServiceIdTest() throws Exception NotifyServiceEntity notifyServiceOne = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name one") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name one") .withLdnUrl("https://service.ldn.org/inbox") .build(); @@ -10628,18 +10652,17 @@ public void patchCOARNotifyServiceReplaceTest() throws Exception { NotifyServiceEntity notifyServiceOne = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name one") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name one") .withLdnUrl("https://service.ldn.org/inbox") .build(); NotifyServiceEntity notifyServiceTwo = - NotifyServiceBuilder.createNotifyServiceBuilder(context).withName("service name two") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name two") .withLdnUrl("https://service2.ldn.org/inbox") .build(); NotifyServiceEntity notifyServiceThree = - NotifyServiceBuilder.createNotifyServiceBuilder(context).withName("service name three") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name three") .withLdnUrl("https://service3.ldn.org/inbox") .build(); @@ -10713,18 +10736,17 @@ public void patchCOARNotifyServiceReplaceWithInCompatibleServicesTest() throws E NotifyServiceEntity notifyServiceOne = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name one") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name one") .withLdnUrl("https://service.ldn.org/inbox") .build(); NotifyServiceEntity notifyServiceTwo = - NotifyServiceBuilder.createNotifyServiceBuilder(context).withName("service name two") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name two") .withLdnUrl("https://service2.ldn.org/inbox") .build(); NotifyServiceEntity notifyServiceThree = - NotifyServiceBuilder.createNotifyServiceBuilder(context).withName("service name three") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name three") .withLdnUrl("https://service3.ldn.org/inbox") .build(); @@ -10776,13 +10798,12 @@ public void patchCOARNotifyServiceRemoveTest() throws Exception { NotifyServiceEntity notifyServiceOne = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name one") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name one") .withLdnUrl("https://service.ldn.org/inbox") .build(); NotifyServiceEntity notifyServiceTwo = - NotifyServiceBuilder.createNotifyServiceBuilder(context).withName("service name two") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name two") .withLdnUrl("https://service2.ldn.org/inbox") .build(); @@ -10837,18 +10858,17 @@ public void submissionCOARNotifyServicesSectionWithValidationErrorsTest() throws NotifyServiceEntity notifyServiceOne = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name one") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name one") .withLdnUrl("https://service.ldn.org/inbox") .build(); NotifyServiceEntity notifyServiceTwo = - NotifyServiceBuilder.createNotifyServiceBuilder(context).withName("service name two") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name two") .withLdnUrl("https://service2.ldn.org/inbox") .build(); NotifyServiceEntity notifyServiceThree = - NotifyServiceBuilder.createNotifyServiceBuilder(context).withName("service name three") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name three") .withLdnUrl("https://service3.ldn.org/inbox") .build(); @@ -10917,8 +10937,7 @@ public void submissionCOARNotifyServicesSectionWithoutValidationErrorsTest() thr NotifyServiceEntity notifyServiceOne = - NotifyServiceBuilder.createNotifyServiceBuilder(context) - .withName("service name one") + NotifyServiceBuilder.createNotifyServiceBuilder(context, "service name one") .withLdnUrl("https://service.ldn.org/inbox") .build(); diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/authorization/CCLicenseFeatureRestIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/authorization/CCLicenseFeatureRestIT.java index 38fc9a06fd8d..be8851cb5c06 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/authorization/CCLicenseFeatureRestIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/authorization/CCLicenseFeatureRestIT.java @@ -202,8 +202,10 @@ public void checkAuthorizationAsItemAdminTest() throws Exception { Community com = CommunityBuilder.createCommunity(context).withName("A community").build(); Collection col = CollectionBuilder.createCollection(context, com).withName("A collection").build(); Item item = ItemBuilder.createItem(context, col).withTitle("Item to withdraw").build(); - ResourcePolicy resource = ResourcePolicyBuilder.createResourcePolicy(context).withAction(Constants.ADMIN) - .withUser(eperson).withDspaceObject(item).build(); + ResourcePolicy resource = ResourcePolicyBuilder.createResourcePolicy(context, eperson, null) + .withAction(Constants.ADMIN) + .withDspaceObject(item) + .build(); context.restoreAuthSystemState(); ItemRest itemRest = itemConverter.convert(item, Projection.DEFAULT); diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/authorization/CanManageBitstreamBundlesFeatureIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/authorization/CanManageBitstreamBundlesFeatureIT.java index 6e29c5b9494b..8d900bfd7c0a 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/authorization/CanManageBitstreamBundlesFeatureIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/authorization/CanManageBitstreamBundlesFeatureIT.java @@ -216,9 +216,8 @@ public void checkCanCreateVersionsFeatureTest() throws Exception { @SuppressWarnings("unchecked") public void itemAdminSetPropertyCreateBitstreamToFalseTest() throws Exception { context.turnOffAuthorisationSystem(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, userA, null) .withAction(Constants.ADMIN) - .withUser(userA) .withDspaceObject(itemA).build(); configurationService.setProperty("core.authorization.item-admin.create-bitstream", false); @@ -260,9 +259,8 @@ public void itemAdminSetPropertyCreateBitstreamToFalseTest() throws Exception { @SuppressWarnings("unchecked") public void itemAdminSetPropertyDeleteBitstreamToFalseTest() throws Exception { context.turnOffAuthorisationSystem(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, userA, null) .withAction(Constants.ADMIN) - .withUser(userA) .withDspaceObject(itemA).build(); configurationService.setProperty("core.authorization.item-admin.delete-bitstream", false); @@ -304,9 +302,8 @@ public void itemAdminSetPropertyDeleteBitstreamToFalseTest() throws Exception { @SuppressWarnings("unchecked") public void itemAdminSetPropertyCollectionAdminCreateBitstreamToFalseTest() throws Exception { context.turnOffAuthorisationSystem(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, userA, null) .withAction(Constants.ADMIN) - .withUser(userA) .withDspaceObject(itemA).build(); configurationService.setProperty("core.authorization.collection-admin.item.create-bitstream", false); @@ -365,9 +362,8 @@ public void itemAdminSetPropertyCollectionAdminCreateBitstreamToFalseTest() thro @SuppressWarnings("unchecked") public void itemAdminSetPropertyCollectionAdminDeleteBitstreamToFalseTest() throws Exception { context.turnOffAuthorisationSystem(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, userA, null) .withAction(Constants.ADMIN) - .withUser(userA) .withDspaceObject(itemA).build(); configurationService.setProperty("core.authorization.collection-admin.item.delete-bitstream", false); @@ -426,9 +422,8 @@ public void itemAdminSetPropertyCollectionAdminDeleteBitstreamToFalseTest() thro @SuppressWarnings("unchecked") public void itemAdminSetPropertyCommunityAdminCreateBitstreamToFalseTest() throws Exception { context.turnOffAuthorisationSystem(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, userA, null) .withAction(Constants.ADMIN) - .withUser(userA) .withDspaceObject(itemA).build(); configurationService.setProperty("core.authorization.community-admin.item.create-bitstream", false); @@ -487,9 +482,8 @@ public void itemAdminSetPropertyCommunityAdminCreateBitstreamToFalseTest() throw @SuppressWarnings("unchecked") public void itemAdminSetPropertyCommunityAdminDeleteBitstreamToFalseTest() throws Exception { context.turnOffAuthorisationSystem(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, userA, null) .withAction(Constants.ADMIN) - .withUser(userA) .withDspaceObject(itemA).build(); configurationService.setProperty("core.authorization.community-admin.item.delete-bitstream", false); @@ -544,4 +538,4 @@ public void itemAdminSetPropertyCommunityAdminDeleteBitstreamToFalseTest() throw } -} \ No newline at end of file +} diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/authorization/CanManageMappingsFeatureIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/authorization/CanManageMappingsFeatureIT.java index e85ca857b916..498983ef65b8 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/authorization/CanManageMappingsFeatureIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/authorization/CanManageMappingsFeatureIT.java @@ -151,15 +151,13 @@ public void epersonCollectionNotFound() throws Exception { @Test public void addWriteEpersonCollectionSuccess() throws Exception { - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, eperson, null) .withDspaceObject(collectionA) .withAction(Constants.ADD) - .withUser(eperson) .build(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, eperson, null) .withDspaceObject(collectionA) .withAction(Constants.WRITE) - .withUser(eperson) .build(); String epersonToken = getAuthToken(eperson.getEmail(), password); @@ -175,10 +173,9 @@ public void addWriteEpersonCollectionSuccess() throws Exception { @Test public void adminEpersonCollectionSuccess() throws Exception { - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, eperson, null) .withDspaceObject(collectionA) .withAction(Constants.ADMIN) - .withUser(eperson) .build(); String epersonToken = getAuthToken(eperson.getEmail(), password); diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/authorization/CanSubscribeFeatureIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/authorization/CanSubscribeFeatureIT.java index abb52f374ba1..3acbc34a1376 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/authorization/CanSubscribeFeatureIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/authorization/CanSubscribeFeatureIT.java @@ -289,10 +289,9 @@ public void canNotSubscribeCommunityTest() throws Exception { private void setPermissions(DSpaceObject dSpaceObject, Group group, Integer permissions) { try { - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, null, group) .withDspaceObject(dSpaceObject) .withAction(permissions) - .withGroup(group) .build(); } catch (SQLException | AuthorizeException sqlException) { log.error(sqlException.getMessage()); @@ -309,4 +308,4 @@ private void cleanUpPermissions(List resourcePolicies) { } } -} \ No newline at end of file +} diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/authorization/CollectionAdminFeatureIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/authorization/CollectionAdminFeatureIT.java index b305c23a5b95..e2d6f5ee6e88 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/authorization/CollectionAdminFeatureIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/authorization/CollectionAdminFeatureIT.java @@ -175,8 +175,10 @@ public void testSubGroupOfAdminGroup() throws Exception { String token = getAuthToken(eperson.getEmail(), password); // Verify an ePerson in a subgroup of the site administrators has this feature + // Filter by "feature" ID because Admins may have >20 features enabled & cause this endpoint to paginate. getClient(token).perform(get("/api/authz/authorizations/search/object?embed=feature&uri=" - + "http://localhost/api/core/sites/" + siteService.findSite(context).getID())) + + "http://localhost/api/core/sites/" + siteService.findSite(context).getID() + + "&feature=isCollectionAdmin")) .andExpect(status().isOk()) .andExpect( jsonPath("$._embedded.authorizations[?(@._embedded.feature.id=='isCollectionAdmin')]") @@ -284,8 +286,10 @@ public void testSubSubGroupOfAdminGroup() throws Exception { String token = getAuthToken(eperson.getEmail(), password); // Verify an ePerson in a sub-subgroup of the site administrators has this feature + // Filter by "feature" ID because Admins may have >20 features enabled & cause this endpoint to paginate. getClient(token).perform(get("/api/authz/authorizations/search/object?embed=feature&uri=" - + "http://localhost/api/core/sites/" + siteService.findSite(context).getID())) + + "http://localhost/api/core/sites/" + siteService.findSite(context).getID() + + "&feature=isCollectionAdmin")) .andExpect(status().isOk()) .andExpect( jsonPath("$._embedded.authorizations[?(@._embedded.feature.id=='isCollectionAdmin')]") diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/authorization/ComColAdminFeatureIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/authorization/ComColAdminFeatureIT.java index a3b73717937c..e50553cc5734 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/authorization/ComColAdminFeatureIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/authorization/ComColAdminFeatureIT.java @@ -102,8 +102,10 @@ public void testAdmin() throws Exception { String token = getAuthToken(admin.getEmail(), password); // Verify the general admin has this feature + // Filter by "feature" ID because Admins may have >20 features enabled & cause this endpoint to paginate. getClient(token).perform(get("/api/authz/authorizations/search/object?embed=feature&uri=" - + "http://localhost/api/core/sites/" + siteService.findSite(context).getID())) + + "http://localhost/api/core/sites/" + siteService.findSite(context).getID() + + "&feature=isComColAdmin")) .andExpect(status().isOk()) .andExpect( jsonPath("$._embedded.authorizations[?(@._embedded.feature.id=='isComColAdmin')]") @@ -175,8 +177,10 @@ public void testSubGroupOfAdminGroup() throws Exception { String token = getAuthToken(eperson.getEmail(), password); // Verify an ePerson in a subgroup of the site administrators has this feature + // Filter by "feature" ID because Admins may have >20 features enabled & cause this endpoint to paginate. getClient(token).perform(get("/api/authz/authorizations/search/object?embed=feature&uri=" - + "http://localhost/api/core/sites/" + siteService.findSite(context).getID())) + + "http://localhost/api/core/sites/" + siteService.findSite(context).getID() + + "&feature=isComColAdmin")) .andExpect(status().isOk()) .andExpect( jsonPath("$._embedded.authorizations[?(@._embedded.feature.id=='isComColAdmin')]") @@ -284,8 +288,10 @@ public void testSubSubGroupOfAdminGroup() throws Exception { String token = getAuthToken(eperson.getEmail(), password); // Verify an ePerson in a sub-subgroup of the site administrators has this feature + // Filter by "feature" ID because Admins may have >20 features enabled & cause this endpoint to paginate. getClient(token).perform(get("/api/authz/authorizations/search/object?embed=feature&uri=" - + "http://localhost/api/core/sites/" + siteService.findSite(context).getID())) + + "http://localhost/api/core/sites/" + siteService.findSite(context).getID() + + "&feature=isComColAdmin")) .andExpect(status().isOk()) .andExpect( jsonPath("$._embedded.authorizations[?(@._embedded.feature.id=='isComColAdmin')]") diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/authorization/EditItemFeatureIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/authorization/EditItemFeatureIT.java index 4bdc7743b571..ec9020a761bb 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/authorization/EditItemFeatureIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/authorization/EditItemFeatureIT.java @@ -96,8 +96,7 @@ public void testNoRights() throws Exception { @Test public void testDirectEPersonWritePolicy() throws Exception { - ResourcePolicy rp = ResourcePolicyBuilder.createResourcePolicy(context) - .withUser(eperson) + ResourcePolicy rp = ResourcePolicyBuilder.createResourcePolicy(context, eperson, null) .withDspaceObject(itemA1X) .withAction(Constants.WRITE) .build(); @@ -108,8 +107,7 @@ public void testDirectEPersonWritePolicy() throws Exception { @Test public void testDirectGroupWritePolicy() throws Exception { - ResourcePolicy rp = ResourcePolicyBuilder.createResourcePolicy(context) - .withGroup(group) + ResourcePolicy rp = ResourcePolicyBuilder.createResourcePolicy(context, null, group) .withDspaceObject(itemA1X) .withAction(Constants.WRITE) .build(); @@ -120,8 +118,7 @@ public void testDirectGroupWritePolicy() throws Exception { @Test public void testDirectEPersonAdminPolicy() throws Exception { - ResourcePolicy rp = ResourcePolicyBuilder.createResourcePolicy(context) - .withUser(eperson) + ResourcePolicy rp = ResourcePolicyBuilder.createResourcePolicy(context, eperson, null) .withDspaceObject(itemA1X) .withAction(Constants.ADMIN) .build(); @@ -132,8 +129,7 @@ public void testDirectEPersonAdminPolicy() throws Exception { @Test public void testDirectGroupAdminPolicy() throws Exception { - ResourcePolicy rp = ResourcePolicyBuilder.createResourcePolicy(context) - .withGroup(group) + ResourcePolicy rp = ResourcePolicyBuilder.createResourcePolicy(context, null, group) .withDspaceObject(itemA1X) .withAction(Constants.ADMIN) .build(); diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/authorization/GenericAuthorizationFeatureIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/authorization/GenericAuthorizationFeatureIT.java index 0ac7eea4250d..7a08b70eb91a 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/authorization/GenericAuthorizationFeatureIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/authorization/GenericAuthorizationFeatureIT.java @@ -16,6 +16,7 @@ import org.apache.commons.codec.CharEncoding; import org.apache.commons.io.IOUtils; import org.dspace.app.rest.test.AbstractControllerIntegrationTest; +import org.dspace.authorize.ResourcePolicy; import org.dspace.builder.BitstreamBuilder; import org.dspace.builder.BundleBuilder; import org.dspace.builder.CollectionBuilder; @@ -150,25 +151,21 @@ public void setUp() throws Exception { .withName("item1AdminGroup") .addMember(item1Admin) .build(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, null, item1AdminGroup) .withDspaceObject(item1) .withAction(Constants.ADMIN) - .withGroup(item1AdminGroup) .build(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, communityAWriter, null) .withDspaceObject(communityA) .withAction(Constants.WRITE) - .withUser(communityAWriter) .build(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, collectionXWriter, null) .withDspaceObject(collectionX) .withAction(Constants.WRITE) - .withUser(collectionXWriter) .build(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, item1Writer, null) .withDspaceObject(item1) .withAction(Constants.WRITE) - .withUser(item1Writer) .build(); communityB = CommunityBuilder.createCommunity(context) @@ -670,10 +667,9 @@ public void testCanMoveAdmin() throws Exception { // grant item 1 admin REMOVE permissions on the item’s owning collection // verify item 1 admin has this feature on item 1 context.turnOffAuthorisationSystem(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicy removePermission = ResourcePolicyBuilder.createResourcePolicy(context, item1Writer, null) .withDspaceObject(collectionX) .withAction(Constants.REMOVE) - .withUser(item1Writer) .build(); context.restoreAuthSystemState(); @@ -690,10 +686,9 @@ public void testCanMoveWriter() throws Exception { // grant item 1 write REMOVE permissions on the item’s owning collection context.turnOffAuthorisationSystem(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicy removePermission = ResourcePolicyBuilder.createResourcePolicy(context, item1Writer, null) .withDspaceObject(collectionX) .withAction(Constants.REMOVE) - .withUser(item1Writer) .build(); context.restoreAuthSystemState(); @@ -765,10 +760,9 @@ public void testCanDeleteAdmin() throws Exception { .withEmail("communityAAAdmin@my.edu") .withPassword(password) .build(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, communityAAAdmin, null) .withDspaceObject(communityAA) .withAction(Constants.ADMIN) - .withUser(communityAAAdmin) .build(); context.restoreAuthSystemState(); String communityAAAdminToken = getAuthToken(communityAAAdmin.getEmail(), password); @@ -923,10 +917,9 @@ public void testCanDeleteAdminParent() throws Exception { .withEmail("communityAAAdmin@my.edu") .withPassword(password) .build(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, communityAAAdmin, null) .withDspaceObject(communityA) .withAction(Constants.REMOVE) - .withUser(communityAAAdmin) .build(); context.restoreAuthSystemState(); String communityAAAdminToken = getAuthToken(communityAAAdmin.getEmail(), password); @@ -938,10 +931,9 @@ public void testCanDeleteAdminParent() throws Exception { // Grant REMOVE permissions on community AA for collection X admin context.turnOffAuthorisationSystem(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, collectionXAdmin, null) .withDspaceObject(communityAA) .withAction(Constants.REMOVE) - .withUser(collectionXAdmin) .build(); context.restoreAuthSystemState(); // verify collection X admin has this feature on collection X @@ -952,10 +944,9 @@ public void testCanDeleteAdminParent() throws Exception { // Grant REMOVE permissions on collection X for item 1 admin context.turnOffAuthorisationSystem(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, item1Admin, null) .withDspaceObject(collectionX) .withAction(Constants.REMOVE) - .withUser(item1Admin) .build(); context.restoreAuthSystemState(); // verify item 1 admin has this feature on item 1 @@ -981,10 +972,9 @@ public void testCanDeleteMinimalPermissions() throws Exception { .withEmail("communityADeleter@my.edu") .withPassword(password) .build(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, communityADeleter, null) .withDspaceObject(communityA) .withAction(Constants.DELETE) - .withUser(communityADeleter) .build(); context.restoreAuthSystemState(); String communityADeleterToken = getAuthToken(communityADeleter.getEmail(), password); @@ -1007,10 +997,9 @@ public void testCanDeleteMinimalPermissions() throws Exception { .withEmail("communityARemover@my.edu") .withPassword(password) .build(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, communityARemover, null) .withDspaceObject(communityA) .withAction(Constants.REMOVE) - .withUser(communityARemover) .build(); context.restoreAuthSystemState(); String communityARemoverToken = getAuthToken(communityARemover.getEmail(), password); @@ -1037,10 +1026,9 @@ public void testCanDeleteMinimalPermissions() throws Exception { .withEmail("communityAARemover@my.edu") .withPassword(password) .build(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, communityAARemover, null) .withDspaceObject(communityAA) .withAction(Constants.REMOVE) - .withUser(communityAARemover) .build(); context.restoreAuthSystemState(); String communityAARemoverToken = getAuthToken(communityAARemover.getEmail(), password); @@ -1067,10 +1055,9 @@ public void testCanDeleteMinimalPermissions() throws Exception { .withEmail("communityXRemover@my.edu") .withPassword(password) .build(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, collectionXRemover, null) .withDspaceObject(collectionX) .withAction(Constants.REMOVE) - .withUser(collectionXRemover) .build(); context.restoreAuthSystemState(); String collectionXRemoverToken = getAuthToken(collectionXRemover.getEmail(), password); @@ -1087,10 +1074,9 @@ public void testCanDeleteMinimalPermissions() throws Exception { .withEmail("item1Deleter@my.edu") .withPassword(password) .build(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, item1Deleter, null) .withDspaceObject(item1) .withAction(Constants.DELETE) - .withUser(item1Deleter) .build(); context.restoreAuthSystemState(); String item1DeleterToken = getAuthToken(item1Deleter.getEmail(), password); @@ -1107,15 +1093,13 @@ public void testCanDeleteMinimalPermissions() throws Exception { .withEmail("collectionXDeleter@my.edu") .withPassword(password) .build(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, collectionXRemoverItem1Deleter, null) .withDspaceObject(collectionX) .withAction(Constants.REMOVE) - .withUser(collectionXRemoverItem1Deleter) .build(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, collectionXRemoverItem1Deleter, null) .withDspaceObject(item1) .withAction(Constants.DELETE) - .withUser(collectionXRemoverItem1Deleter) .build(); context.restoreAuthSystemState(); String collectionXRemoverItem1DeleterToken = getAuthToken(collectionXRemoverItem1Deleter.getEmail(), password); @@ -1142,10 +1126,9 @@ public void testCanDeleteMinimalPermissions() throws Exception { .withEmail("item1Remover@my.edu") .withPassword(password) .build(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, item1Remover, null) .withDspaceObject(item1) .withAction(Constants.REMOVE) - .withUser(item1Remover) .build(); context.restoreAuthSystemState(); String item1RemoverToken = getAuthToken(item1Remover.getEmail(), password); @@ -1172,10 +1155,9 @@ public void testCanDeleteMinimalPermissions() throws Exception { .withEmail("bundle1Remover@my.edu") .withPassword(password) .build(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, bundle1Remover, null) .withDspaceObject(bundle1) .withAction(Constants.REMOVE) - .withUser(bundle1Remover) .build(); context.restoreAuthSystemState(); String bundle1RemoverToken = getAuthToken(bundle1Remover.getEmail(), password); @@ -1193,15 +1175,13 @@ public void testCanDeleteMinimalPermissions() throws Exception { .withEmail("bundle1item1Remover@my.edu") .withPassword(password) .build(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, bundle1item1Remover, null) .withDspaceObject(bundle1) .withAction(Constants.REMOVE) - .withUser(bundle1item1Remover) .build(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, bundle1item1Remover, null) .withDspaceObject(item1) .withAction(Constants.REMOVE) - .withUser(bundle1item1Remover) .build(); context.restoreAuthSystemState(); String bundle1item1RemoverToken = getAuthToken(bundle1item1Remover.getEmail(), password); @@ -1353,10 +1333,9 @@ public void testCanCreateBitstreamWriter() throws Exception { .withEmail("bundle1Writer@my.edu") .withPassword(password) .build(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, bundle1Writer, null) .withDspaceObject(bundle1) .withAction(Constants.WRITE) - .withUser(bundle1Writer) .build(); context.restoreAuthSystemState(); String bundle1WriterToken = getAuthToken(bundle1Writer.getEmail(), password); @@ -1373,10 +1352,9 @@ public void testCanCreateBitstreamWriter() throws Exception { .withEmail("bundle1Adder@my.edu") .withPassword(password) .build(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, bundle1Adder, null) .withDspaceObject(bundle1) .withAction(Constants.ADD) - .withUser(bundle1Adder) .build(); context.restoreAuthSystemState(); String bundle1AdderToken = getAuthToken(bundle1Adder.getEmail(), password); @@ -1394,25 +1372,21 @@ public void testCanCreateBitstreamWriter() throws Exception { .withEmail("bundle1WriterAdder@my.edu") .withPassword(password) .build(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, bundle1WriterAdder, null) .withDspaceObject(bundle1) .withAction(Constants.ADD) - .withUser(bundle1WriterAdder) .build(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, bundle1WriterAdder, null) .withDspaceObject(bundle1) .withAction(Constants.WRITE) - .withUser(bundle1WriterAdder) .build(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, bundle1WriterAdder, null) .withDspaceObject(item1) .withAction(Constants.ADD) - .withUser(bundle1WriterAdder) .build(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, bundle1WriterAdder, null) .withDspaceObject(item1) .withAction(Constants.WRITE) - .withUser(bundle1WriterAdder) .build(); context.restoreAuthSystemState(); String bundle1WriterAdderToken = getAuthToken(bundle1WriterAdder.getEmail(), password); @@ -1460,15 +1434,13 @@ public void testCanCreateBundleWriter() throws Exception { .withEmail("item1AdderWriter@my.edu") .withPassword(password) .build(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, item1AdderWriter, null) .withDspaceObject(item1) .withAction(Constants.ADD) - .withUser(item1AdderWriter) .build(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, item1AdderWriter, null) .withDspaceObject(item1) .withAction(Constants.WRITE) - .withUser(item1AdderWriter) .build(); context.restoreAuthSystemState(); String item1AdderWriterToken = getAuthToken(item1AdderWriter.getEmail(), password); @@ -1491,4 +1463,5 @@ private ResultActions getAuthorizationFeatures(String adminToken, String uri, in ) ); } -} \ No newline at end of file +} + diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/authorization/ManageAdminGroupFeatureIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/authorization/ManageAdminGroupFeatureIT.java index cadb3e1ebba9..49082a1613f1 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/authorization/ManageAdminGroupFeatureIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/authorization/ManageAdminGroupFeatureIT.java @@ -123,10 +123,9 @@ public void anonymousCommunityTestNotFound() throws Exception { @Test public void collectionAdminCollectionTestSuccess() throws Exception { context.turnOffAuthorisationSystem(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, eperson, null) .withDspaceObject(collectionA) .withAction(Constants.ADMIN) - .withUser(eperson) .build(); context.restoreAuthSystemState(); @@ -144,10 +143,9 @@ public void collectionAdminCollectionTestSuccess() throws Exception { @Test public void collectionAdminCommunityTestNotFound() throws Exception { context.turnOffAuthorisationSystem(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, eperson, null) .withDspaceObject(collectionA) .withAction(Constants.ADMIN) - .withUser(eperson) .build(); context.restoreAuthSystemState(); diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/authorization/ManageSubmitterGroupFeatureIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/authorization/ManageSubmitterGroupFeatureIT.java index 42ad0c11055e..fbf20337ebbe 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/authorization/ManageSubmitterGroupFeatureIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/authorization/ManageSubmitterGroupFeatureIT.java @@ -123,10 +123,9 @@ public void anonymousCommunityTestNotFound() throws Exception { @Test public void collectionAdminCollectionTestSuccess() throws Exception { context.turnOffAuthorisationSystem(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, eperson, null) .withDspaceObject(collectionA) .withAction(Constants.ADMIN) - .withUser(eperson) .build(); context.restoreAuthSystemState(); @@ -144,10 +143,9 @@ public void collectionAdminCollectionTestSuccess() throws Exception { @Test public void collectionAdminCommunityTestNotFound() throws Exception { context.turnOffAuthorisationSystem(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, eperson, null) .withDspaceObject(collectionA) .withAction(Constants.ADMIN) - .withUser(eperson) .build(); context.restoreAuthSystemState(); diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/authorization/ManageTemplateItemFeatureIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/authorization/ManageTemplateItemFeatureIT.java index 613dfe11513e..97e32e55be5b 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/authorization/ManageTemplateItemFeatureIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/authorization/ManageTemplateItemFeatureIT.java @@ -123,10 +123,9 @@ public void anonymousCommunityTestNotFound() throws Exception { @Test public void collectionAdminCollectionTestSuccess() throws Exception { context.turnOffAuthorisationSystem(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, eperson, null) .withDspaceObject(collectionA) .withAction(Constants.ADMIN) - .withUser(eperson) .build(); context.restoreAuthSystemState(); @@ -144,10 +143,9 @@ public void collectionAdminCollectionTestSuccess() throws Exception { @Test public void collectionAdminCommunityTestNotFound() throws Exception { context.turnOffAuthorisationSystem(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, eperson, null) .withDspaceObject(collectionA) .withAction(Constants.ADMIN) - .withUser(eperson) .build(); context.restoreAuthSystemState(); diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/authorization/ManageWorkflowGroupFeatureIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/authorization/ManageWorkflowGroupFeatureIT.java index ddf0bbac5c4d..411aa76a2352 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/authorization/ManageWorkflowGroupFeatureIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/authorization/ManageWorkflowGroupFeatureIT.java @@ -123,10 +123,9 @@ public void anonymousCommunityTestNotFound() throws Exception { @Test public void collectionAdminCollectionTestSuccess() throws Exception { context.turnOffAuthorisationSystem(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, eperson, null) .withDspaceObject(collectionA) .withAction(Constants.ADMIN) - .withUser(eperson) .build(); context.restoreAuthSystemState(); @@ -144,10 +143,9 @@ public void collectionAdminCollectionTestSuccess() throws Exception { @Test public void collectionAdminCommunityTestNotFound() throws Exception { context.turnOffAuthorisationSystem(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, eperson, null) .withDspaceObject(collectionA) .withAction(Constants.ADMIN) - .withUser(eperson) .build(); context.restoreAuthSystemState(); diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/authorization/SubmitFeatureIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/authorization/SubmitFeatureIT.java index bba45ecd229f..2613cf8ad205 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/authorization/SubmitFeatureIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/authorization/SubmitFeatureIT.java @@ -89,8 +89,7 @@ public void testNoRights() throws Exception { @Test public void testDirectEPersonAddPolicy() throws Exception { - ResourcePolicy rp = ResourcePolicyBuilder.createResourcePolicy(context) - .withUser(eperson) + ResourcePolicy rp = ResourcePolicyBuilder.createResourcePolicy(context, eperson, null) .withDspaceObject(collectionA1) .withAction(Constants.ADD) .build(); @@ -99,8 +98,7 @@ public void testDirectEPersonAddPolicy() throws Exception { @Test public void testDirectGroupAddPolicy() throws Exception { - ResourcePolicy rp = ResourcePolicyBuilder.createResourcePolicy(context) - .withGroup(group) + ResourcePolicy rp = ResourcePolicyBuilder.createResourcePolicy(context, null, group) .withDspaceObject(collectionA1) .withAction(Constants.ADD) .build(); @@ -109,8 +107,7 @@ public void testDirectGroupAddPolicy() throws Exception { @Test public void testDirectEPersonAdminPolicy() throws Exception { - ResourcePolicy rp = ResourcePolicyBuilder.createResourcePolicy(context) - .withUser(eperson) + ResourcePolicy rp = ResourcePolicyBuilder.createResourcePolicy(context, eperson, null) .withDspaceObject(collectionA1) .withAction(Constants.ADMIN) .build(); @@ -119,8 +116,7 @@ public void testDirectEPersonAdminPolicy() throws Exception { @Test public void testDirectGroupAdminPolicy() throws Exception { - ResourcePolicy rp = ResourcePolicyBuilder.createResourcePolicy(context) - .withGroup(group) + ResourcePolicy rp = ResourcePolicyBuilder.createResourcePolicy(context, null, group) .withDspaceObject(collectionA1) .withAction(Constants.ADMIN) .build(); @@ -199,8 +195,7 @@ public void testNoRightsOnCollection() throws Exception { @Test public void testDirectEPersonAddPolicyOnCollection() throws Exception { - ResourcePolicy rp = ResourcePolicyBuilder.createResourcePolicy(context) - .withUser(eperson) + ResourcePolicy rp = ResourcePolicyBuilder.createResourcePolicy(context, eperson, null) .withDspaceObject(collectionA1) .withAction(Constants.ADD) .build(); @@ -210,8 +205,7 @@ public void testDirectEPersonAddPolicyOnCollection() throws Exception { @Test public void testDirectGroupAddPolicyOnCollection() throws Exception { - ResourcePolicy rp = ResourcePolicyBuilder.createResourcePolicy(context) - .withGroup(group) + ResourcePolicy rp = ResourcePolicyBuilder.createResourcePolicy(context, null, group) .withDspaceObject(collectionA1) .withAction(Constants.ADD) .build(); @@ -221,8 +215,7 @@ public void testDirectGroupAddPolicyOnCollection() throws Exception { @Test public void testDirectEPersonAdminPolicyOnCollection() throws Exception { - ResourcePolicy rp = ResourcePolicyBuilder.createResourcePolicy(context) - .withUser(eperson) + ResourcePolicy rp = ResourcePolicyBuilder.createResourcePolicy(context, eperson, null) .withDspaceObject(collectionA1) .withAction(Constants.ADMIN) .build(); @@ -232,8 +225,7 @@ public void testDirectEPersonAdminPolicyOnCollection() throws Exception { @Test public void testDirectGroupAdminPolicyOnCollection() throws Exception { - ResourcePolicy rp = ResourcePolicyBuilder.createResourcePolicy(context) - .withGroup(group) + ResourcePolicy rp = ResourcePolicyBuilder.createResourcePolicy(context, null, group) .withDspaceObject(collectionA1) .withAction(Constants.ADMIN) .build(); diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/eperson/DeleteEPersonSubmitterIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/eperson/DeleteEPersonSubmitterIT.java index 866dba724503..349ec71fbaf2 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/eperson/DeleteEPersonSubmitterIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/eperson/DeleteEPersonSubmitterIT.java @@ -22,8 +22,8 @@ import java.util.List; import java.util.UUID; import java.util.concurrent.atomic.AtomicReference; -import javax.ws.rs.core.MediaType; +import jakarta.ws.rs.core.MediaType; import org.apache.logging.log4j.LogManager; import org.apache.logging.log4j.Logger; import org.dspace.app.requestitem.RequestItemAuthor; diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/iiif/IIIFControllerIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/iiif/IIIFControllerIT.java index 0fee32e9d47a..3b980cef2409 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/iiif/IIIFControllerIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/iiif/IIIFControllerIT.java @@ -18,8 +18,8 @@ import java.io.InputStream; import java.util.UUID; -import javax.ws.rs.core.MediaType; +import jakarta.ws.rs.core.MediaType; import org.apache.commons.codec.CharEncoding; import org.apache.commons.io.IOUtils; import org.dspace.app.rest.test.AbstractControllerIntegrationTest; diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/matcher/ResourcePolicyMatcher.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/matcher/ResourcePolicyMatcher.java index d80fb638cdd3..caae7bb7c0e6 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/matcher/ResourcePolicyMatcher.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/matcher/ResourcePolicyMatcher.java @@ -14,8 +14,7 @@ import static org.hamcrest.Matchers.is; import static org.hamcrest.Matchers.nullValue; -import javax.annotation.Nullable; - +import jakarta.annotation.Nullable; import org.dspace.authorize.ResourcePolicy; import org.dspace.content.DSpaceObject; import org.dspace.core.Constants; diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/projection/MockProjection.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/projection/MockProjection.java index 780cc90cfbcf..a74462e1ebe0 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/projection/MockProjection.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/projection/MockProjection.java @@ -7,8 +7,7 @@ */ package org.dspace.app.rest.projection; -import javax.annotation.Nullable; - +import jakarta.annotation.Nullable; import org.dspace.app.rest.model.LinkRest; import org.dspace.app.rest.model.MockObject; import org.dspace.app.rest.model.MockObjectRest; diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/repository/AbstractMockObjectChildLinkRepository.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/repository/AbstractMockObjectChildLinkRepository.java index 0b9babda6874..2e974e47e9ea 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/repository/AbstractMockObjectChildLinkRepository.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/repository/AbstractMockObjectChildLinkRepository.java @@ -9,9 +9,9 @@ import java.util.ArrayList; import java.util.List; -import javax.annotation.Nullable; -import javax.servlet.http.HttpServletRequest; +import jakarta.annotation.Nullable; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.model.MockObject; import org.dspace.app.rest.model.MockObjectRest; import org.dspace.app.rest.projection.Projection; diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/security/DSpaceCsrfTokenRepositoryTest.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/security/DSpaceCsrfTokenRepositoryTest.java index 0b9964fe6ab4..95ce6bb37ff1 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/security/DSpaceCsrfTokenRepositoryTest.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/security/DSpaceCsrfTokenRepositoryTest.java @@ -8,11 +8,13 @@ package org.dspace.app.rest.security; import static org.assertj.core.api.Assertions.assertThat; +import static org.assertj.core.api.Assertions.assertThatIllegalArgumentException; +import static org.mockito.ArgumentMatchers.any; +import static org.mockito.Mockito.spy; +import static org.mockito.Mockito.verify; -import java.util.List; -import javax.servlet.http.Cookie; -import javax.ws.rs.core.HttpHeaders; - +import jakarta.servlet.http.Cookie; +import jakarta.ws.rs.core.HttpHeaders; import org.junit.Before; import org.junit.Test; import org.junit.runner.RunWith; @@ -20,10 +22,11 @@ import org.springframework.mock.web.MockHttpServletRequest; import org.springframework.mock.web.MockHttpServletResponse; import org.springframework.security.web.csrf.CsrfToken; +import org.springframework.security.web.csrf.DeferredCsrfToken; /** - * This is almost an exact copy of Spring Security's CookieCsrfTokenRepositoryTests - * https://github.com/spring-projects/spring-security/blob/5.2.x/web/src/test/java/org/springframework/security/web/csrf/CookieCsrfTokenRepositoryTests.java + * This is almost an exact copy of Spring Security's DSpaceCsrfTokenRepositoryTests + * https://github.com/spring-projects/spring-security/blob/6.2.x/web/src/test/java/org/springframework/security/web/csrf/CookieCsrfTokenRepositoryTests.java * * The only modifications are: * - Updating these tests to use our custom DSpaceCsrfTokenRepository @@ -46,12 +49,9 @@ public void setup() { @Test public void generateToken() { CsrfToken generateToken = this.repository.generateToken(this.request); - assertThat(generateToken).isNotNull(); - assertThat(generateToken.getHeaderName()) - .isEqualTo(DSpaceCsrfTokenRepository.DEFAULT_CSRF_HEADER_NAME); - assertThat(generateToken.getParameterName()) - .isEqualTo(DSpaceCsrfTokenRepository.DEFAULT_CSRF_PARAMETER_NAME); + assertThat(generateToken.getHeaderName()).isEqualTo(DSpaceCsrfTokenRepository.DEFAULT_CSRF_HEADER_NAME); + assertThat(generateToken.getParameterName()).isEqualTo(DSpaceCsrfTokenRepository.DEFAULT_CSRF_PARAMETER_NAME); assertThat(generateToken.getToken()).isNotEmpty(); } @@ -61,9 +61,7 @@ public void generateTokenCustom() { String parameterName = "paramName"; this.repository.setHeaderName(headerName); this.repository.setParameterName(parameterName); - CsrfToken generateToken = this.repository.generateToken(this.request); - assertThat(generateToken).isNotNull(); assertThat(generateToken.getHeaderName()).isEqualTo(headerName); assertThat(generateToken.getParameterName()).isEqualTo(parameterName); @@ -74,17 +72,21 @@ public void generateTokenCustom() { public void saveToken() { CsrfToken token = this.repository.generateToken(this.request); this.repository.saveToken(token, this.request, this.response); - - Cookie tokenCookie = this.response - .getCookie(DSpaceCsrfTokenRepository.DEFAULT_CSRF_COOKIE_NAME); - + Cookie tokenCookie = this.response.getCookie(DSpaceCsrfTokenRepository.DEFAULT_CSRF_COOKIE_NAME); assertThat(tokenCookie.getMaxAge()).isEqualTo(-1); - assertThat(tokenCookie.getName()) - .isEqualTo(DSpaceCsrfTokenRepository.DEFAULT_CSRF_COOKIE_NAME); + assertThat(tokenCookie.getName()).isEqualTo(DSpaceCsrfTokenRepository.DEFAULT_CSRF_COOKIE_NAME); assertThat(tokenCookie.getPath()).isEqualTo(this.request.getContextPath()); assertThat(tokenCookie.getSecure()).isEqualTo(this.request.isSecure()); assertThat(tokenCookie.getValue()).isEqualTo(token.getToken()); - assertThat(tokenCookie.isHttpOnly()).isEqualTo(true); + assertThat(tokenCookie.isHttpOnly()).isTrue(); + } + + @Test + public void saveTokenShouldUseResponseAddCookie() { + CsrfToken token = this.repository.generateToken(this.request); + MockHttpServletResponse spyResponse = spy(this.response); + this.repository.saveToken(token, this.request, spyResponse); + verify(spyResponse).addCookie(any(Cookie.class)); } @Test @@ -92,30 +94,73 @@ public void saveTokenSecure() { this.request.setSecure(true); CsrfToken token = this.repository.generateToken(this.request); this.repository.saveToken(token, this.request, this.response); + Cookie tokenCookie = this.response.getCookie(DSpaceCsrfTokenRepository.DEFAULT_CSRF_COOKIE_NAME); + assertThat(tokenCookie.getSecure()).isTrue(); - Cookie tokenCookie = this.response - .getCookie(DSpaceCsrfTokenRepository.DEFAULT_CSRF_COOKIE_NAME); + // DSpace Custom assert to verify SameSite attribute is "None" when cookie is secure + assertThat(tokenCookie.getAttribute("SameSite")).containsIgnoringCase("None"); + } + + // Custom test for DSpace to verify behavior for non-secure requests + @Test + public void saveTokenNotSecure() { + this.request.setSecure(false); + CsrfToken token = this.repository.generateToken(this.request); + this.repository.saveToken(token, this.request, this.response); + Cookie tokenCookie = this.response.getCookie(DSpaceCsrfTokenRepository.DEFAULT_CSRF_COOKIE_NAME); + assertThat(tokenCookie.getSecure()).isFalse(); + // DSpace Custom assert to verify SameSite attribute is "Lax" when cookie is NOT secure + assertThat(tokenCookie.getAttribute("SameSite")).containsIgnoringCase("Lax"); + } + + @Test + public void saveTokenSecureFlagTrue() { + this.request.setSecure(false); + this.repository.setSecure(Boolean.TRUE); + CsrfToken token = this.repository.generateToken(this.request); + this.repository.saveToken(token, this.request, this.response); + Cookie tokenCookie = this.response.getCookie(DSpaceCsrfTokenRepository.DEFAULT_CSRF_COOKIE_NAME); assertThat(tokenCookie.getSecure()).isTrue(); - // DSpace Custom assert to verify SameSite attribute is set - // The Cookie class doesn't yet support SameSite, so we have to re-read - // the cookie from our headers, and check it. - List headers = this.response.getHeaders(HttpHeaders.SET_COOKIE); - assertThat(headers.size()).isEqualTo(1); - assertThat(headers.get(0)).containsIgnoringCase("SameSite=None"); } @Test - public void saveTokenNull() { + public void saveTokenSecureFlagTrueUsingCustomizer() { + this.request.setSecure(false); + this.repository.setCookieCustomizer((customizer) -> customizer.secure(Boolean.TRUE)); + CsrfToken token = this.repository.generateToken(this.request); + this.repository.saveToken(token, this.request, this.response); + Cookie tokenCookie = this.response.getCookie(DSpaceCsrfTokenRepository.DEFAULT_CSRF_COOKIE_NAME); + assertThat(tokenCookie.getSecure()).isTrue(); + } + + @Test + public void saveTokenSecureFlagFalse() { this.request.setSecure(true); - this.repository.saveToken(null, this.request, this.response); + this.repository.setSecure(Boolean.FALSE); + CsrfToken token = this.repository.generateToken(this.request); + this.repository.saveToken(token, this.request, this.response); + Cookie tokenCookie = this.response.getCookie(DSpaceCsrfTokenRepository.DEFAULT_CSRF_COOKIE_NAME); + assertThat(tokenCookie.getSecure()).isFalse(); + } - Cookie tokenCookie = this.response - .getCookie(DSpaceCsrfTokenRepository.DEFAULT_CSRF_COOKIE_NAME); + @Test + public void saveTokenSecureFlagFalseUsingCustomizer() { + this.request.setSecure(true); + this.repository.setCookieCustomizer((customizer) -> customizer.secure(Boolean.FALSE)); + CsrfToken token = this.repository.generateToken(this.request); + this.repository.saveToken(token, this.request, this.response); + Cookie tokenCookie = this.response.getCookie(DSpaceCsrfTokenRepository.DEFAULT_CSRF_COOKIE_NAME); + assertThat(tokenCookie.getSecure()).isFalse(); + } + @Test + public void saveTokenNull() { + this.request.setSecure(true); + this.repository.saveToken(null, this.request, this.response); + Cookie tokenCookie = this.response.getCookie(DSpaceCsrfTokenRepository.DEFAULT_CSRF_COOKIE_NAME); assertThat(tokenCookie.getMaxAge()).isZero(); - assertThat(tokenCookie.getName()) - .isEqualTo(DSpaceCsrfTokenRepository.DEFAULT_CSRF_COOKIE_NAME); + assertThat(tokenCookie.getName()).isEqualTo(DSpaceCsrfTokenRepository.DEFAULT_CSRF_COOKIE_NAME); assertThat(tokenCookie.getPath()).isEqualTo(this.request.getContextPath()); assertThat(tokenCookie.getSecure()).isEqualTo(this.request.isSecure()); assertThat(tokenCookie.getValue()).isEmpty(); @@ -126,10 +171,16 @@ public void saveTokenHttpOnlyTrue() { this.repository.setCookieHttpOnly(true); CsrfToken token = this.repository.generateToken(this.request); this.repository.saveToken(token, this.request, this.response); + Cookie tokenCookie = this.response.getCookie(DSpaceCsrfTokenRepository.DEFAULT_CSRF_COOKIE_NAME); + assertThat(tokenCookie.isHttpOnly()).isTrue(); + } - Cookie tokenCookie = this.response - .getCookie(DSpaceCsrfTokenRepository.DEFAULT_CSRF_COOKIE_NAME); - + @Test + public void saveTokenHttpOnlyTrueUsingCustomizer() { + this.repository.setCookieCustomizer((customizer) -> customizer.httpOnly(true)); + CsrfToken token = this.repository.generateToken(this.request); + this.repository.saveToken(token, this.request, this.response); + Cookie tokenCookie = this.response.getCookie(DSpaceCsrfTokenRepository.DEFAULT_CSRF_COOKIE_NAME); assertThat(tokenCookie.isHttpOnly()).isTrue(); } @@ -138,10 +189,16 @@ public void saveTokenHttpOnlyFalse() { this.repository.setCookieHttpOnly(false); CsrfToken token = this.repository.generateToken(this.request); this.repository.saveToken(token, this.request, this.response); + Cookie tokenCookie = this.response.getCookie(DSpaceCsrfTokenRepository.DEFAULT_CSRF_COOKIE_NAME); + assertThat(tokenCookie.isHttpOnly()).isFalse(); + } - Cookie tokenCookie = this.response - .getCookie(DSpaceCsrfTokenRepository.DEFAULT_CSRF_COOKIE_NAME); - + @Test + public void saveTokenHttpOnlyFalseUsingCustomizer() { + this.repository.setCookieCustomizer((customizer) -> customizer.httpOnly(false)); + CsrfToken token = this.repository.generateToken(this.request); + this.repository.saveToken(token, this.request, this.response); + Cookie tokenCookie = this.response.getCookie(DSpaceCsrfTokenRepository.DEFAULT_CSRF_COOKIE_NAME); assertThat(tokenCookie.isHttpOnly()).isFalse(); } @@ -150,10 +207,7 @@ public void saveTokenWithHttpOnlyFalse() { this.repository = DSpaceCsrfTokenRepository.withHttpOnlyFalse(); CsrfToken token = this.repository.generateToken(this.request); this.repository.saveToken(token, this.request, this.response); - - Cookie tokenCookie = this.response - .getCookie(DSpaceCsrfTokenRepository.DEFAULT_CSRF_COOKIE_NAME); - + Cookie tokenCookie = this.response.getCookie(DSpaceCsrfTokenRepository.DEFAULT_CSRF_COOKIE_NAME); assertThat(tokenCookie.isHttpOnly()).isFalse(); } @@ -163,10 +217,7 @@ public void saveTokenCustomPath() { this.repository.setCookiePath(customPath); CsrfToken token = this.repository.generateToken(this.request); this.repository.saveToken(token, this.request, this.response); - - Cookie tokenCookie = this.response - .getCookie(DSpaceCsrfTokenRepository.DEFAULT_CSRF_COOKIE_NAME); - + Cookie tokenCookie = this.response.getCookie(DSpaceCsrfTokenRepository.DEFAULT_CSRF_COOKIE_NAME); assertThat(tokenCookie.getPath()).isEqualTo(this.repository.getCookiePath()); } @@ -176,10 +227,7 @@ public void saveTokenEmptyCustomPath() { this.repository.setCookiePath(customPath); CsrfToken token = this.repository.generateToken(this.request); this.repository.saveToken(token, this.request, this.response); - - Cookie tokenCookie = this.response - .getCookie(DSpaceCsrfTokenRepository.DEFAULT_CSRF_COOKIE_NAME); - + Cookie tokenCookie = this.response.getCookie(DSpaceCsrfTokenRepository.DEFAULT_CSRF_COOKIE_NAME); assertThat(tokenCookie.getPath()).isEqualTo(this.request.getContextPath()); } @@ -189,10 +237,7 @@ public void saveTokenNullCustomPath() { this.repository.setCookiePath(customPath); CsrfToken token = this.repository.generateToken(this.request); this.repository.saveToken(token, this.request, this.response); - - Cookie tokenCookie = this.response - .getCookie(DSpaceCsrfTokenRepository.DEFAULT_CSRF_COOKIE_NAME); - + Cookie tokenCookie = this.response.getCookie(DSpaceCsrfTokenRepository.DEFAULT_CSRF_COOKIE_NAME); assertThat(tokenCookie.getPath()).isEqualTo(this.request.getContextPath()); } @@ -200,14 +245,80 @@ public void saveTokenNullCustomPath() { public void saveTokenWithCookieDomain() { String domainName = "example.com"; this.repository.setCookieDomain(domainName); + CsrfToken token = this.repository.generateToken(this.request); + this.repository.saveToken(token, this.request, this.response); + Cookie tokenCookie = this.response.getCookie(DSpaceCsrfTokenRepository.DEFAULT_CSRF_COOKIE_NAME); + assertThat(tokenCookie.getDomain()).isEqualTo(domainName); + } + + @Test + public void saveTokenWithCookieDomainUsingCustomizer() { + String domainName = "example.com"; + this.repository.setCookieCustomizer((customizer) -> customizer.domain(domainName)); + CsrfToken token = this.repository.generateToken(this.request); + this.repository.saveToken(token, this.request, this.response); + Cookie tokenCookie = this.response.getCookie(DSpaceCsrfTokenRepository.DEFAULT_CSRF_COOKIE_NAME); + assertThat(tokenCookie.getDomain()).isEqualTo(domainName); + } + @Test + public void saveTokenWithCookieMaxAge() { + int maxAge = 1200; + this.repository.setCookieMaxAge(maxAge); CsrfToken token = this.repository.generateToken(this.request); this.repository.saveToken(token, this.request, this.response); + Cookie tokenCookie = this.response.getCookie(DSpaceCsrfTokenRepository.DEFAULT_CSRF_COOKIE_NAME); + assertThat(tokenCookie.getMaxAge()).isEqualTo(maxAge); + } - Cookie tokenCookie = this.response - .getCookie(DSpaceCsrfTokenRepository.DEFAULT_CSRF_COOKIE_NAME); + @Test + public void saveTokenWithCookieMaxAgeUsingCustomizer() { + int maxAge = 1200; + this.repository.setCookieCustomizer((customizer) -> customizer.maxAge(maxAge)); + CsrfToken token = this.repository.generateToken(this.request); + this.repository.saveToken(token, this.request, this.response); + Cookie tokenCookie = this.response.getCookie(DSpaceCsrfTokenRepository.DEFAULT_CSRF_COOKIE_NAME); + assertThat(tokenCookie.getMaxAge()).isEqualTo(maxAge); + } - assertThat(tokenCookie.getDomain()).isEqualTo(domainName); + @Test + public void saveTokenWithSameSiteNull() { + String sameSitePolicy = null; + this.repository.setCookieCustomizer((customizer) -> customizer.sameSite(sameSitePolicy)); + CsrfToken token = this.repository.generateToken(this.request); + this.repository.saveToken(token, this.request, this.response); + Cookie tokenCookie = this.response.getCookie(DSpaceCsrfTokenRepository.DEFAULT_CSRF_COOKIE_NAME); + assertThat(tokenCookie.getAttribute("SameSite")).isNull(); + } + + @Test + public void saveTokenWithSameSiteStrict() { + String sameSitePolicy = "Strict"; + this.repository.setCookieCustomizer((customizer) -> customizer.sameSite(sameSitePolicy)); + CsrfToken token = this.repository.generateToken(this.request); + this.repository.saveToken(token, this.request, this.response); + Cookie tokenCookie = this.response.getCookie(DSpaceCsrfTokenRepository.DEFAULT_CSRF_COOKIE_NAME); + assertThat(tokenCookie.getAttribute("SameSite")).isEqualTo(sameSitePolicy); + } + + @Test + public void saveTokenWithSameSiteLax() { + String sameSitePolicy = "Lax"; + this.repository.setCookieCustomizer((customizer) -> customizer.sameSite(sameSitePolicy)); + CsrfToken token = this.repository.generateToken(this.request); + this.repository.saveToken(token, this.request, this.response); + Cookie tokenCookie = this.response.getCookie(DSpaceCsrfTokenRepository.DEFAULT_CSRF_COOKIE_NAME); + assertThat(tokenCookie.getAttribute("SameSite")).isEqualTo(sameSitePolicy); + } + + @Test + public void saveTokenWithExistingSetCookieThenDoesNotOverwrite() { + this.response.setHeader(HttpHeaders.SET_COOKIE, "MyCookie=test"); + this.repository = new DSpaceCsrfTokenRepository(); + CsrfToken token = this.repository.generateToken(this.request); + this.repository.saveToken(token, this.request, this.response); + assertThat(this.response.getCookie("MyCookie")).isNotNull(); + assertThat(this.response.getCookie(DSpaceCsrfTokenRepository.DEFAULT_CSRF_COOKIE_NAME)).isNotNull(); } @Test @@ -218,32 +329,24 @@ public void loadTokenNoCookiesNull() { @Test public void loadTokenCookieIncorrectNameNull() { this.request.setCookies(new Cookie("other", "name")); - assertThat(this.repository.loadToken(this.request)).isNull(); } @Test public void loadTokenCookieValueEmptyString() { - this.request.setCookies( - new Cookie(DSpaceCsrfTokenRepository.DEFAULT_CSRF_COOKIE_NAME, "")); - + this.request.setCookies(new Cookie(DSpaceCsrfTokenRepository.DEFAULT_CSRF_COOKIE_NAME, "")); assertThat(this.repository.loadToken(this.request)).isNull(); } @Test public void loadToken() { CsrfToken generateToken = this.repository.generateToken(this.request); - this.request - .setCookies(new Cookie(DSpaceCsrfTokenRepository.DEFAULT_CSRF_COOKIE_NAME, - generateToken.getToken())); - + .setCookies(new Cookie(DSpaceCsrfTokenRepository.DEFAULT_CSRF_COOKIE_NAME, generateToken.getToken())); CsrfToken loadToken = this.repository.loadToken(this.request); - assertThat(loadToken).isNotNull(); assertThat(loadToken.getHeaderName()).isEqualTo(generateToken.getHeaderName()); - assertThat(loadToken.getParameterName()) - .isEqualTo(generateToken.getParameterName()); + assertThat(loadToken.getParameterName()).isEqualTo(generateToken.getParameterName()); assertThat(loadToken.getToken()).isNotEmpty(); } @@ -256,32 +359,95 @@ public void loadTokenCustom() { this.repository.setHeaderName(headerName); this.repository.setParameterName(parameterName); this.repository.setCookieName(cookieName); - this.request.setCookies(new Cookie(cookieName, value)); - CsrfToken loadToken = this.repository.loadToken(this.request); - assertThat(loadToken).isNotNull(); assertThat(loadToken.getHeaderName()).isEqualTo(headerName); assertThat(loadToken.getParameterName()).isEqualTo(parameterName); assertThat(loadToken.getToken()).isEqualTo(value); } - @Test(expected = IllegalArgumentException.class) + @Test + public void loadDeferredTokenWhenDoesNotExistThenGeneratedAndSaved() { + DeferredCsrfToken deferredCsrfToken = this.repository.loadDeferredToken(this.request, this.response); + CsrfToken csrfToken = deferredCsrfToken.get(); + assertThat(csrfToken).isNotNull(); + assertThat(deferredCsrfToken.isGenerated()).isTrue(); + Cookie tokenCookie = this.response.getCookie(DSpaceCsrfTokenRepository.DEFAULT_CSRF_COOKIE_NAME); + assertThat(tokenCookie).isNotNull(); + assertThat(tokenCookie.getMaxAge()).isEqualTo(-1); + assertThat(tokenCookie.getName()).isEqualTo(DSpaceCsrfTokenRepository.DEFAULT_CSRF_COOKIE_NAME); + assertThat(tokenCookie.getPath()).isEqualTo(this.request.getContextPath()); + assertThat(tokenCookie.getSecure()).isEqualTo(this.request.isSecure()); + assertThat(tokenCookie.getValue()).isEqualTo(csrfToken.getToken()); + assertThat(tokenCookie.isHttpOnly()).isEqualTo(true); + } + + @Test + public void loadDeferredTokenWhenExistsAndNullSavedThenGeneratedAndSaved() { + CsrfToken generatedToken = this.repository.generateToken(this.request); + this.request + .setCookies(new Cookie(DSpaceCsrfTokenRepository.DEFAULT_CSRF_COOKIE_NAME, generatedToken.getToken())); + this.repository.saveToken(null, this.request, this.response); + DeferredCsrfToken deferredCsrfToken = this.repository.loadDeferredToken(this.request, this.response); + CsrfToken csrfToken = deferredCsrfToken.get(); + assertThat(csrfToken).isNotNull(); + assertThat(generatedToken).isNotEqualTo(csrfToken); + assertThat(deferredCsrfToken.isGenerated()).isTrue(); + } + + @Test + public void cookieCustomizer() { + String domainName = "example.com"; + String customPath = "/custompath"; + String sameSitePolicy = "Strict"; + this.repository.setCookieCustomizer((customizer) -> { + customizer.domain(domainName); + customizer.secure(false); + customizer.path(customPath); + customizer.sameSite(sameSitePolicy); + }); + CsrfToken token = this.repository.generateToken(this.request); + this.repository.saveToken(token, this.request, this.response); + Cookie tokenCookie = this.response.getCookie(DSpaceCsrfTokenRepository.DEFAULT_CSRF_COOKIE_NAME); + assertThat(tokenCookie).isNotNull(); + assertThat(tokenCookie.getMaxAge()).isEqualTo(-1); + assertThat(tokenCookie.getDomain()).isEqualTo(domainName); + assertThat(tokenCookie.getPath()).isEqualTo(customPath); + assertThat(tokenCookie.isHttpOnly()).isEqualTo(Boolean.TRUE); + assertThat(tokenCookie.getAttribute("SameSite")).isEqualTo(sameSitePolicy); + } + + @Test + public void withHttpOnlyFalseWhenCookieCustomizerThenStillDefaultsToFalse() { + DSpaceCsrfTokenRepository repository = DSpaceCsrfTokenRepository.withHttpOnlyFalse(); + repository.setCookieCustomizer((customizer) -> customizer.maxAge(1000)); + CsrfToken token = repository.generateToken(this.request); + repository.saveToken(token, this.request, this.response); + Cookie tokenCookie = this.response.getCookie(DSpaceCsrfTokenRepository.DEFAULT_CSRF_COOKIE_NAME); + assertThat(tokenCookie).isNotNull(); + assertThat(tokenCookie.getMaxAge()).isEqualTo(1000); + assertThat(tokenCookie.isHttpOnly()).isEqualTo(Boolean.FALSE); + } + + @Test public void setCookieNameNullIllegalArgumentException() { - this.repository.setCookieName(null); + assertThatIllegalArgumentException().isThrownBy(() -> this.repository.setCookieName(null)); } - @Test(expected = IllegalArgumentException.class) + @Test public void setParameterNameNullIllegalArgumentException() { - this.repository.setParameterName(null); + assertThatIllegalArgumentException().isThrownBy(() -> this.repository.setParameterName(null)); } - @Test(expected = IllegalArgumentException.class) + @Test public void setHeaderNameNullIllegalArgumentException() { - this.repository.setHeaderName(null); + assertThatIllegalArgumentException().isThrownBy(() -> this.repository.setHeaderName(null)); } - + @Test + public void setCookieMaxAgeZeroIllegalArgumentException() { + assertThatIllegalArgumentException().isThrownBy(() -> this.repository.setCookieMaxAge(0)); + } } diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/security/ShibbolethLoginFilterIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/security/ShibbolethLoginFilterIT.java index a8422ec10671..f48c58b2ee2f 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/security/ShibbolethLoginFilterIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/security/ShibbolethLoginFilterIT.java @@ -16,8 +16,8 @@ import java.util.ArrayList; import java.util.List; -import javax.ws.rs.core.MediaType; +import jakarta.ws.rs.core.MediaType; import org.dspace.app.rest.authorization.AuthorizationFeature; import org.dspace.app.rest.authorization.AuthorizationFeatureService; import org.dspace.app.rest.authorization.impl.CanChangePasswordFeature; diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/security/jwt/EPersonClaimProviderTest.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/security/jwt/EPersonClaimProviderTest.java index 8ca6bbcc3bf3..461c8747d349 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/security/jwt/EPersonClaimProviderTest.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/security/jwt/EPersonClaimProviderTest.java @@ -13,9 +13,9 @@ import static org.mockito.Mockito.when; import java.util.UUID; -import javax.servlet.http.HttpServletRequest; import com.nimbusds.jwt.JWTClaimsSet; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.core.Context; import org.dspace.eperson.EPerson; import org.dspace.eperson.service.EPersonService; diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/security/jwt/JWTTokenHandlerTest.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/security/jwt/JWTTokenHandlerTest.java index 5f807d826a92..926b9eff575d 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/security/jwt/JWTTokenHandlerTest.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/security/jwt/JWTTokenHandlerTest.java @@ -16,10 +16,10 @@ import java.util.Base64; import java.util.Date; import java.util.List; -import javax.servlet.http.HttpServletRequest; import com.nimbusds.jwt.JWTClaimsSet; import com.nimbusds.jwt.SignedJWT; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.core.Context; import org.dspace.eperson.EPerson; import org.dspace.eperson.service.EPersonService; diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/security/jwt/ShortLivedJWTTokenHandlerTest.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/security/jwt/ShortLivedJWTTokenHandlerTest.java index 70497218652e..d5a72ea9a5cd 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/security/jwt/ShortLivedJWTTokenHandlerTest.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/security/jwt/ShortLivedJWTTokenHandlerTest.java @@ -14,10 +14,10 @@ import java.text.ParseException; import java.util.Base64; import java.util.Date; -import javax.servlet.http.HttpServletRequest; import com.nimbusds.jwt.JWTClaimsSet; import com.nimbusds.jwt.SignedJWT; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.core.Context; import org.dspace.eperson.EPerson; import org.junit.Before; diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/security/jwt/SpecialGroupClaimProviderTest.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/security/jwt/SpecialGroupClaimProviderTest.java index 42ac74be85dc..95064368099c 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/security/jwt/SpecialGroupClaimProviderTest.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/security/jwt/SpecialGroupClaimProviderTest.java @@ -14,9 +14,9 @@ import java.util.ArrayList; import java.util.List; import java.util.UUID; -import javax.servlet.http.HttpServletRequest; import com.nimbusds.jwt.JWTClaimsSet; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.core.Context; import org.junit.After; import org.junit.Before; diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/test/AbstractControllerIntegrationTest.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/test/AbstractControllerIntegrationTest.java index 4ec66fb00081..c4ab14250bca 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/test/AbstractControllerIntegrationTest.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/test/AbstractControllerIntegrationTest.java @@ -7,7 +7,6 @@ */ package org.dspace.app.rest.test; -import static org.springframework.security.test.web.servlet.request.SecurityMockMvcRequestPostProcessors.csrf; import static org.springframework.security.test.web.servlet.setup.SecurityMockMvcConfigurers.springSecurity; import static org.springframework.test.web.servlet.request.MockMvcRequestBuilders.get; import static org.springframework.test.web.servlet.request.MockMvcRequestBuilders.post; @@ -17,14 +16,18 @@ import java.sql.SQLException; import java.util.Arrays; import java.util.List; -import javax.servlet.Filter; import com.fasterxml.jackson.core.JsonProcessingException; import com.fasterxml.jackson.databind.ObjectMapper; +import jakarta.servlet.Filter; +import jakarta.servlet.http.Cookie; +import org.apache.commons.lang3.ArrayUtils; import org.apache.commons.lang3.StringUtils; +import org.apache.logging.log4j.Logger; import org.dspace.AbstractIntegrationTestWithDatabase; import org.dspace.app.TestApplication; import org.dspace.app.rest.model.patch.Operation; +import org.dspace.app.rest.security.DSpaceCsrfTokenRepository; import org.dspace.app.rest.utils.DSpaceConfigurationInitializer; import org.dspace.app.rest.utils.DSpaceKernelInitializer; import org.junit.Assert; @@ -44,6 +47,8 @@ import org.springframework.test.context.junit4.SpringRunner; import org.springframework.test.context.web.WebAppConfiguration; import org.springframework.test.web.servlet.MockMvc; +import org.springframework.test.web.servlet.MvcResult; +import org.springframework.test.web.servlet.request.MockHttpServletRequestBuilder; import org.springframework.test.web.servlet.request.RequestPostProcessor; import org.springframework.test.web.servlet.result.MockMvcResultHandlers; import org.springframework.test.web.servlet.setup.DefaultMockMvcBuilder; @@ -80,6 +85,8 @@ mergeMode = TestExecutionListeners.MergeMode.MERGE_WITH_DEFAULTS) public class AbstractControllerIntegrationTest extends AbstractIntegrationTestWithDatabase { + private static final Logger log = org.apache.logging.log4j.LogManager.getLogger(); + protected static final String AUTHORIZATION_HEADER = "Authorization"; protected static final String AUTHORIZATION_COOKIE = "Authorization-cookie"; @@ -137,26 +144,20 @@ public MockMvc getClient(String authToken) throws SQLException { context.commit(); } - DefaultMockMvcBuilder mockMvcBuilder = webAppContextSetup(webApplicationContext) - //Always log the response to debug - .alwaysDo(MockMvcResultHandlers.print()) - //Add all filter implementations - .addFilters(new ErrorPageFilter()) - .addFilters(requestFilters.toArray(new Filter[requestFilters.size()])) - // Enable/Integrate Spring Security with MockMVC - .apply(springSecurity()); + DefaultMockMvcBuilder mockMvcBuilder = setupDefaultMockMvcBuilder(true); + + // Default to performing a GET request to the root path + MockHttpServletRequestBuilder defaultRequest = get("/"); - // Make sure all MockMvc requests (in all tests) include a valid CSRF token (in header) by default. // If an authToken was passed in, also make sure request sends the authToken in the "Authorization" header if (StringUtils.isNotBlank(authToken)) { - mockMvcBuilder.defaultRequest( - get("/").with(csrf().asHeader()).header(AUTHORIZATION_HEADER, AUTHORIZATION_TYPE + authToken)); - } else { - mockMvcBuilder.defaultRequest(get("/").with(csrf().asHeader())); + defaultRequest.header(AUTHORIZATION_HEADER, AUTHORIZATION_TYPE + authToken); } - return mockMvcBuilder - .build(); + // Make sure all MockMvc requests (in all tests) include a valid CSRF token by default. + defaultRequest.with(validCsrfToken()); + + return mockMvcBuilder.defaultRequest(defaultRequest).build(); } public MockHttpServletResponse getAuthResponse(String user, String password) throws Exception { @@ -205,4 +206,162 @@ public static RequestPostProcessor ip(final String ipAddress) { return request; }; } + + /** + * Adds a *valid* CSRF token to the current mock request. This is useful for tests + * that need to verify behavior when an valid CSRF token is sent. + * Usage: .with(validCsrfToken()) + *

+ * TODO: Ideally this would be replaced by Spring Security's "csrf().asHeader()". But, at this time + * that post processor doesn't fully support CookieCsrfTokenRepository's (which is what DSpace uses) + * See https://stackoverflow.com/a/77368421 and https://github.com/spring-projects/spring-security/issues/12774 + * @return RequestPostProcessor with invalid token added + */ + public RequestPostProcessor validCsrfToken() { + return request -> { + // Obtain the current CSRF token cookie from the (mock) backend via GET request + // TODO: This method may be expensive for ITs as it GETs a new token for every request. We may want to + // investigate if caching the CSRF token would work without causing random test failures. + Cookie csrfCookie = getCsrfTokenCookie(); + + if (csrfCookie != null) { + // Get any currently set cookies & append CSRF cookie to list + Cookie[] cookies = request.getCookies(); + + // To the current request, add the obtained CSRF cookie and matching CSRF header + request.setCookies(ArrayUtils.add(cookies, csrfCookie)); + request.addHeader(DSpaceCsrfTokenRepository.DEFAULT_CSRF_HEADER_NAME, csrfCookie.getValue()); + return request; + } else { + log.warn("Could not obtain CSRFToken to add it to the current mock request"); + return request; + } + }; + } + + /** + * Adds a *valid* CSRF token to the current mock request via a request parameter. This is useful for tests + * that need to verify behavior when an valid CSRF token is sent via a request param (e.g. ?_csrf=[token]). + * Usage: .with(validCsrfTokenViaParam()) + *

+ * This method is identical to validCsrfToken() except it sends the CSRF token as a request parameter instead of + * an HTTP Header. + *

+ * TODO: Ideally this would be replaced by Spring Security's "csrf()". But, at this time + * that post processor doesn't fully support CookieCsrfTokenRepository's (which is what DSpace uses) + * See https://stackoverflow.com/a/77368421 and https://github.com/spring-projects/spring-security/issues/12774 + * @return RequestPostProcessor with invalid token added + */ + public RequestPostProcessor validCsrfTokenViaParam() { + return request -> { + // Obtain the current CSRF token cookie from the (mock) backend via GET request + // TODO: This method may be expensive for ITs as it GETs a new token for every request. We may want to + // investigate if caching the CSRF token would work without causing random test failures. + Cookie csrfCookie = getCsrfTokenCookie(); + + if (csrfCookie != null) { + // Get any currently set cookies & append CSRF cookie to list + Cookie[] cookies = request.getCookies(); + + // If an CSRF cookie already exists in this list of cookies, remove it. We'll replace it below. + // (This is necessary because our tests all default to calling validCsrfToken()) + cookies = Arrays.stream(cookies) + .filter(c -> !c.getName() + .equalsIgnoreCase( + DSpaceCsrfTokenRepository.DEFAULT_CSRF_COOKIE_NAME)) + .toArray(Cookie[]::new); + + // Also remove CSRF header if it is already set. We'll send the CSRF token via a request parameter + request.removeHeader(DSpaceCsrfTokenRepository.DEFAULT_CSRF_HEADER_NAME); + + // To the current request, add the obtained CSRF cookie and matching CSRF parameter + request.setCookies(ArrayUtils.add(cookies, csrfCookie)); + request.addParameter(DSpaceCsrfTokenRepository.DEFAULT_CSRF_PARAMETER_NAME, csrfCookie.getValue()); + return request; + } else { + log.warn("Could not obtain CSRFToken to add it to the current mock request"); + return request; + } + }; + } + + /** + * Adds an invalid CSRF token to the current mock request. This is useful for tests which need to verify behavior + * when an invalid CSRF token is sent. + *

+ * Usage: .with(invalidCsrfToken()) + * @return RequestPostProcessor with invalid token added + */ + public RequestPostProcessor invalidCsrfToken() { + return request -> { + // Get any currently set request Cookies + Cookie[] cookies = request.getCookies(); + + // If an CSRF cookie already exists in this list of cookies, remove it. We'll replace it below. + // (This is necessary because our tests all default to sending a *valid* CSRF token) + cookies = Arrays.stream(cookies) + .filter(c -> !c.getName() + .equalsIgnoreCase( + DSpaceCsrfTokenRepository.DEFAULT_CSRF_COOKIE_NAME)) + .toArray(Cookie[]::new); + + // Also remove CSRF header if it is already set. We'll replace it below. + request.removeHeader(DSpaceCsrfTokenRepository.DEFAULT_CSRF_HEADER_NAME); + + // To the current mock request, add a fake CSRF cookie and header that do NOT match. + request.setCookies(ArrayUtils.add(cookies, + new Cookie(DSpaceCsrfTokenRepository.DEFAULT_CSRF_COOKIE_NAME, + "fake-csrf-token"))); + request.addHeader(DSpaceCsrfTokenRepository.DEFAULT_CSRF_HEADER_NAME, "not-a-valid-csrf-token"); + return request; + }; + } + + + /** + * Setup our DefaultMockMvcBuilder for DSpace. This is centralized in a private method as it's used in + * multiple places in this class. + * @param enableLogging whether to default to logging the MockMvc request or not. + * @return DefaultMockMvcBuilder + */ + private DefaultMockMvcBuilder setupDefaultMockMvcBuilder(boolean enableLogging) { + DefaultMockMvcBuilder defaultMockMvcBuilder = webAppContextSetup(webApplicationContext) + // Add all filter implementations + .addFilters(new ErrorPageFilter()) + .addFilters(requestFilters.toArray(new Filter[requestFilters.size()])) + // Enable/Integrate Spring Security with MockMVC + .apply(springSecurity()); + + if (enableLogging) { + // Always log the MockMvc request/response, to allow for easier debugging. + return defaultMockMvcBuilder.alwaysDo(MockMvcResultHandlers.print()); + } else { + return defaultMockMvcBuilder; + } + } + + + /** + * Return the Cookie set by Spring Security which contains the CSRF token. + * The value() of the cookie is the CSRF Token. + * @return Cookie with CSRF token + * @throws Exception + */ + public Cookie getCsrfTokenCookie() { + try { + // Set up a non-logging MockMvc builder to obtain the CSRF cookie + // This call is not logged by default to avoid cluttering logs of ITs, but you can switch this to "true" + // if you wish it to be logged. + MockMvc mockMvc = setupDefaultMockMvcBuilder(false).build(); + + // Perform a GET request to our CSRF endpoint to obtain the current CSRF token + MvcResult mvcResult = mockMvc.perform(get("/api/security/csrf")).andReturn(); + + // Read and return the Cookie which contains the CSRF token for DSpace + return mvcResult.getResponse().getCookie(DSpaceCsrfTokenRepository.DEFAULT_CSRF_COOKIE_NAME); + } catch (Exception e) { + log.error("Could not obtain the CSRF token cookie for Integration Tests", e); + } + return null; + } } diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/test/AbstractWebClientIntegrationTest.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/test/AbstractWebClientIntegrationTest.java index 54339aa1d6f0..7745fba96c3f 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/test/AbstractWebClientIntegrationTest.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/test/AbstractWebClientIntegrationTest.java @@ -16,7 +16,7 @@ import org.springframework.beans.factory.annotation.Autowired; import org.springframework.boot.test.context.SpringBootTest; import org.springframework.boot.test.web.client.TestRestTemplate; -import org.springframework.boot.web.server.LocalServerPort; +import org.springframework.boot.test.web.server.LocalServerPort; import org.springframework.context.ApplicationContext; import org.springframework.http.HttpEntity; import org.springframework.http.RequestEntity; diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/test/MetadataPatchSuite.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/test/MetadataPatchSuite.java index 423a4cbe3513..b22a74a33f3c 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/test/MetadataPatchSuite.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/test/MetadataPatchSuite.java @@ -11,10 +11,9 @@ import static org.springframework.test.web.servlet.request.MockMvcRequestBuilders.patch; import static org.springframework.test.web.servlet.result.MockMvcResultMatchers.status; -import javax.ws.rs.core.MediaType; - import com.fasterxml.jackson.databind.JsonNode; import com.fasterxml.jackson.databind.ObjectMapper; +import jakarta.ws.rs.core.MediaType; import org.junit.Assert; import org.springframework.test.web.servlet.MockMvc; import org.springframework.test.web.servlet.ResultActions; diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/sword2/Swordv2IT.java b/dspace-server-webapp/src/test/java/org/dspace/app/sword2/Swordv2IT.java index 64e3db7dfc1a..296bef1bce4d 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/sword2/Swordv2IT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/sword2/Swordv2IT.java @@ -20,9 +20,13 @@ import org.dspace.builder.CollectionBuilder; import org.dspace.builder.CommunityBuilder; import org.dspace.builder.ItemBuilder; +import org.dspace.builder.WorkflowItemBuilder; +import org.dspace.builder.WorkspaceItemBuilder; import org.dspace.content.Collection; import org.dspace.content.Item; +import org.dspace.content.WorkspaceItem; import org.dspace.services.ConfigurationService; +import org.dspace.xmlworkflow.storedcomponents.XmlWorkflowItem; import org.junit.Assume; import org.junit.Before; import org.junit.ClassRule; @@ -237,7 +241,7 @@ public void depositAndEditViaSwordTest() throws Exception { String editLink = response.getHeaders().getLocation().toString(); // Body should include that link as the rel="edit" URL - assertThat(response.getBody(), containsString("")); + assertThat(response.getBody(), containsString(" response = responseAsString(request); + assertEquals(HttpStatus.OK, response.getStatusCode()); + // Verify the new Item title is now included in the response body + assertThat(response.getBody(), containsString(titleOfItem)); + + //---- + // STEP 2: Verify WorkspaceItem can be deleted by submitter + //---- + authHeaders = new HttpHeaders(); + authHeaders.setBasicAuth(eperson.getEmail(), password); + request = RequestEntity.delete(editLink) + .headers(authHeaders) + .build(); + response = responseAsString(request); + // Expect a 204 No Content response + assertEquals(HttpStatus.NO_CONTENT, response.getStatusCode()); + + // Verify that Edit URI now returns a 404 (deleted successfully) + authHeaders = new HttpHeaders(); + authHeaders.setBasicAuth(eperson.getEmail(), password); + request = RequestEntity.get(editLink) + .accept(MediaType.valueOf("application/atom+xml")) + .headers(authHeaders) + .build(); + response = responseAsString(request); + // Expect a 404 response as content was deleted + assertEquals(HttpStatus.NOT_FOUND, response.getStatusCode()); + } + + + @Test + public void deleteWorkflowItemViaSwordTest() throws Exception { + context.turnOffAuthorisationSystem(); + // Create a top level community and one Collection + parentCommunity = CommunityBuilder.createCommunity(context) + .withName("Parent Community") + .build(); + // Create a Collection with a workflow step enabled + Collection collection = CollectionBuilder.createCollection(context, parentCommunity) + .withName("Test SWORDv2 Workflow Collection") + .withSubmitterGroup(eperson) + .withWorkflowGroup(1, admin) + .build(); + + String titleOfItem = "This is a test SWORD workflow item"; + XmlWorkflowItem workflowItem = WorkflowItemBuilder.createWorkflowItem(context, collection) + .withSubmitter(eperson) + .withTitle(titleOfItem) + .withIssueDate("2017-10-17") + .build(); + // Above changes MUST be committed to the database for SWORDv2 to see them. + context.commit(); + context.restoreAuthSystemState(); + + // Edit link of WorkflowItem is the Item UUID + String editLink = "/swordv2/edit/" + workflowItem.getItem().getID(); + + //---- + // STEP 1: Verify WorkflowItem is found via SWORDv2 when logged in as the submitter + //---- + HttpHeaders authHeaders = new HttpHeaders(); + authHeaders.setBasicAuth(eperson.getEmail(), password); + RequestEntity request = RequestEntity.get(editLink) + .accept(MediaType.valueOf("application/atom+xml")) + .headers(authHeaders) + .build(); + ResponseEntity response = responseAsString(request); + assertEquals(HttpStatus.OK, response.getStatusCode()); + // Verify the new Item title is now included in the response body + assertThat(response.getBody(), containsString(titleOfItem)); + + //---- + // STEP 2: Verify WorkflowItem can be deleted by ADMIN only + //---- + // NOTE: Once Item is in Workflow, deletion requires ADMIN permissions + authHeaders = new HttpHeaders(); + authHeaders.setBasicAuth(admin.getEmail(), password); + request = RequestEntity.delete(editLink) + .headers(authHeaders) + .build(); + response = responseAsString(request); + // Expect a 204 No Content response + assertEquals(HttpStatus.NO_CONTENT, response.getStatusCode()); + + // Verify that Edit URI now returns a 404 (deleted successfully) + authHeaders = new HttpHeaders(); + authHeaders.setBasicAuth(eperson.getEmail(), password); + request = RequestEntity.get(editLink) + .accept(MediaType.valueOf("application/atom+xml")) + .headers(authHeaders) + .build(); + response = responseAsString(request); + // Expect a 404 response as content was deleted + assertEquals(HttpStatus.NOT_FOUND, response.getStatusCode()); + } + @Test public void editUnauthorizedTest() throws Exception { // Attempt to POST to /edit endpoint without sending authentication information diff --git a/dspace-server-webapp/src/test/java/org/dspace/external/provider/impl/MockOpenaireFundingDataProvider.java b/dspace-server-webapp/src/test/java/org/dspace/external/provider/impl/MockOpenaireFundingDataProvider.java index 34f1ae16c74c..2e92e36b9198 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/external/provider/impl/MockOpenaireFundingDataProvider.java +++ b/dspace-server-webapp/src/test/java/org/dspace/external/provider/impl/MockOpenaireFundingDataProvider.java @@ -10,7 +10,6 @@ import static org.mockito.Mockito.when; import java.io.IOException; -import javax.xml.bind.JAXBException; import eu.openaire.jaxb.helper.OpenAIREHandler; import eu.openaire.jaxb.model.Response; @@ -37,7 +36,7 @@ public Response answer(InvocationOnMock invocation) { try { return OpenAIREHandler .unmarshal(this.getClass().getResourceAsStream("openaire-projects.xml")); - } catch (JAXBException e) { + } catch (Exception e) { e.printStackTrace(); } return null; @@ -50,7 +49,7 @@ public Response answer(InvocationOnMock invocation) { try { return OpenAIREHandler .unmarshal(this.getClass().getResourceAsStream("openaire-no-projects.xml")); - } catch (JAXBException e) { + } catch (Exception e) { e.printStackTrace(); } return null; @@ -63,7 +62,7 @@ public Response answer(InvocationOnMock invocation) { try { return OpenAIREHandler .unmarshal(this.getClass().getResourceAsStream("openaire-project.xml")); - } catch (JAXBException e) { + } catch (Exception e) { e.printStackTrace(); } return null; diff --git a/dspace-server-webapp/src/test/resources/org/dspace/app/rest/cinii-second.xml b/dspace-server-webapp/src/test/resources/org/dspace/app/rest/cinii-second.xml index 8eb68ff047fc..cf1845ca5636 100644 --- a/dspace-server-webapp/src/test/resources/org/dspace/app/rest/cinii-second.xml +++ b/dspace-server-webapp/src/test/resources/org/dspace/app/rest/cinii-second.xml @@ -57,7 +57,7 @@ 322 331 - © 2022 The Author(s). Published by National Institute for Materials Science in partnership with Taylor & Francis Group. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. + © 2022 The Author(s). Published by National Institute for Materials Science in partnership with Taylor & Francis Group. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. @@ -74,4 +74,4 @@ oai:irdb.nii.ac.jp:01257:0005348137 - \ No newline at end of file + diff --git a/dspace-server-webapp/src/test/resources/org/dspace/app/rest/dataCite-noResults.json b/dspace-server-webapp/src/test/resources/org/dspace/app/rest/dataCite-noResults.json new file mode 100644 index 000000000000..c54fbe3636da --- /dev/null +++ b/dspace-server-webapp/src/test/resources/org/dspace/app/rest/dataCite-noResults.json @@ -0,0 +1 @@ +{"data":[],"meta":{"total":0,"totalPages":0,"page":1},"links":{"self":"https://api.datacite.org/dois?query=nocontent"}} diff --git a/dspace-server-webapp/src/test/resources/org/dspace/app/rest/dataCite-test.json b/dspace-server-webapp/src/test/resources/org/dspace/app/rest/dataCite-test.json index 8ede6f29a08e..1b7f63cd89c0 100644 --- a/dspace-server-webapp/src/test/resources/org/dspace/app/rest/dataCite-test.json +++ b/dspace-server-webapp/src/test/resources/org/dspace/app/rest/dataCite-test.json @@ -1 +1 @@ -{"data":{"id":"10.48550/arxiv.2207.04779","type":"dois","attributes":{"doi":"10.48550/arxiv.2207.04779","prefix":"10.48550","suffix":"arxiv.2207.04779","identifiers":[{"identifier":"2207.04779","identifierType":"arXiv"}],"alternateIdentifiers":[{"alternateIdentifierType":"arXiv","alternateIdentifier":"2207.04779"}],"creators":[{"name":"Bayer, Jonas","nameType":"Personal","givenName":"Jonas","familyName":"Bayer","affiliation":[],"nameIdentifiers":[]},{"name":"Benzmüller, Christoph","nameType":"Personal","givenName":"Christoph","familyName":"Benzmüller","affiliation":[],"nameIdentifiers":[]},{"name":"Buzzard, Kevin","nameType":"Personal","givenName":"Kevin","familyName":"Buzzard","affiliation":[],"nameIdentifiers":[]},{"name":"David, Marco","nameType":"Personal","givenName":"Marco","familyName":"David","affiliation":[],"nameIdentifiers":[]},{"name":"Lamport, Leslie","nameType":"Personal","givenName":"Leslie","familyName":"Lamport","affiliation":[],"nameIdentifiers":[]},{"name":"Matiyasevich, Yuri","nameType":"Personal","givenName":"Yuri","familyName":"Matiyasevich","affiliation":[],"nameIdentifiers":[]},{"name":"Paulson, Lawrence","nameType":"Personal","givenName":"Lawrence","familyName":"Paulson","affiliation":[],"nameIdentifiers":[]},{"name":"Schleicher, Dierk","nameType":"Personal","givenName":"Dierk","familyName":"Schleicher","affiliation":[],"nameIdentifiers":[]},{"name":"Stock, Benedikt","nameType":"Personal","givenName":"Benedikt","familyName":"Stock","affiliation":[],"nameIdentifiers":[]},{"name":"Zelmanov, Efim","nameType":"Personal","givenName":"Efim","familyName":"Zelmanov","affiliation":[],"nameIdentifiers":[]}],"titles":[{"title":"Mathematical Proof Between Generations"}],"publisher":"arXiv","container":{},"publicationYear":2022,"subjects":[{"lang":"en","subject":"History and Overview (math.HO)","subjectScheme":"arXiv"},{"lang":"en","subject":"Logic in Computer Science (cs.LO)","subjectScheme":"arXiv"},{"subject":"FOS: Mathematics","subjectScheme":"Fields of Science and Technology (FOS)"},{"subject":"FOS: Mathematics","schemeUri":"http://www.oecd.org/science/inno/38235147.pdf","subjectScheme":"Fields of Science and Technology (FOS)"},{"subject":"FOS: Computer and information sciences","subjectScheme":"Fields of Science and Technology (FOS)"},{"subject":"FOS: Computer and information sciences","schemeUri":"http://www.oecd.org/science/inno/38235147.pdf","subjectScheme":"Fields of Science and Technology (FOS)"}],"contributors":[],"dates":[{"date":"2022-07-08T14:42:33Z","dateType":"Submitted","dateInformation":"v1"},{"date":"2022-07-13T00:14:24Z","dateType":"Updated","dateInformation":"v1"},{"date":"2022-07","dateType":"Available","dateInformation":"v1"},{"date":"2022","dateType":"Issued"}],"language":null,"types":{"ris":"GEN","bibtex":"misc","citeproc":"article","schemaOrg":"CreativeWork","resourceType":"Article","resourceTypeGeneral":"Preprint"},"relatedIdentifiers":[],"relatedItems":[],"sizes":[],"formats":[],"version":"1","rightsList":[{"rights":"arXiv.org perpetual, non-exclusive license","rightsUri":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/"}],"descriptions":[{"description":"A proof is one of the most important concepts of mathematics. 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However, there is a striking difference between how a proof is defined in theory and how it is used in practice. This puts the unique status of mathematics as exact science into peril. Now may be the time to reconcile theory and practice, i.e. precision and intuition, through the advent of computer proof assistants. For the most time this has been a topic for experts in specialized communities. However, mathematical proofs have become increasingly sophisticated, stretching the boundaries of what is humanly comprehensible, so that leading mathematicians have asked for formal verification of their proofs. At the same time, major theorems in mathematics have recently been computer-verified by people from outside of these communities, even by beginning students. This article investigates the gap between the different definitions of a proof and possibilities to build bridges. It is written as a polemic or a collage by different members of the communities in mathematics and computer science at different stages of their careers, challenging well-known preconceptions and exploring new perspectives.","descriptionType":"Abstract"},{"description":"17 pages, 1 figure","descriptionType":"Other"}],"geoLocations":[],"fundingReferences":[],"url":"https://arxiv.org/abs/2207.04779","contentUrl":null,"metadataVersion":2,"schemaVersion":"http://datacite.org/schema/kernel-4","source":"mds","isActive":true,"state":"findable","reason":null,"viewCount":0,"downloadCount":0,"referenceCount":0,"citationCount":0,"partCount":0,"partOfCount":0,"versionCount":0,"versionOfCount":1,"created":"2022-07-12T01:41:56Z","registered":"2022-07-12T01:41:57Z","published":null,"updated":"2024-03-05T11:33:47Z"},"relationships":{"client":{"data":{"id":"arxiv.content","type":"clients"}}}}],"meta":{"total":1,"totalPages":1,"page":1,"states":[{"id":"findable","title":"Findable","count":1}],"resourceTypes":[{"id":"text","title":"Text","count":1}],"created":[{"id":"2022","title":"2022","count":1}],"published":[{"id":"2022","title":"2022","count":1}],"registered":[{"id":"2022","title":"2022","count":1}],"providers":[{"id":"arxiv","title":"arXiv","count":1}],"clients":[{"id":"arxiv.content","title":"arXiv","count":1}],"affiliations":[],"prefixes":[{"id":"10.48550","title":"10.48550","count":1}],"certificates":[],"licenses":[],"schemaVersions":[{"id":"4","title":"Schema 4","count":1}],"linkChecksStatus":[],"subjects":[{"id":"FOS: Computer and information sciences","title":"Fos: Computer And Information Sciences","count":1},{"id":"FOS: Mathematics","title":"Fos: Mathematics","count":1},{"id":"History and Overview (math.HO)","title":"History And Overview (Math.Ho)","count":1},{"id":"Logic in Computer Science (cs.LO)","title":"Logic In Computer Science (Cs.Lo)","count":1}],"fieldsOfScience":[{"id":"computer_and_information_sciences","title":"Computer and information sciences","count":1},{"id":"mathematics","title":"Mathematics","count":1}],"citations":[],"views":[],"downloads":[]},"links":{"self":"https://api.datacite.org/dois?query=10.48550/arxiv.2207.04779"}} diff --git a/dspace-server-webapp/src/test/resources/org/dspace/app/rest/ldn_announce_endorsement.json b/dspace-server-webapp/src/test/resources/org/dspace/app/rest/ldn_announce_endorsement.json index 828757c4c1b9..e266565d2c8b 100644 --- a/dspace-server-webapp/src/test/resources/org/dspace/app/rest/ldn_announce_endorsement.json +++ b/dspace-server-webapp/src/test/resources/org/dspace/app/rest/ldn_announce_endorsement.json @@ -12,7 +12,7 @@ "id": "<>", "ietf:cite-as": "https://doi.org/10.5555/12345680", "type": ["sorg:AboutPage"], - "url": { + "ietf:item": { "id": "https://research-organisation.org/repository/preprint/201203/421/content.pdf", "mediaType": "application/pdf", "type": [ diff --git a/dspace-server-webapp/src/test/resources/org/dspace/app/rest/ldn_announce_release.json b/dspace-server-webapp/src/test/resources/org/dspace/app/rest/ldn_announce_release.json index becd3a02c5cf..6c3dce8c7a3f 100644 --- a/dspace-server-webapp/src/test/resources/org/dspace/app/rest/ldn_announce_release.json +++ b/dspace-server-webapp/src/test/resources/org/dspace/app/rest/ldn_announce_release.json @@ -13,7 +13,7 @@ "id_handle": "http://localhost:4000/handle/123456789/1119", "ietf:cite-as": "https://doi.org/10.5555/12345680", "type": "sorg:AboutPage", - "url": { + "ietf:item": { "id": "https://another-research-organisation.org/repository/datasets/item/201203421/data_archive.zip", "mediaType": "application/zip", "type": [ @@ -28,7 +28,7 @@ "as:object": "newValue", "oldas:relationship": "http://purl.org/vocab/frbr/core#supplement", "as:relationship": "somethingElse", - "as:subject": "https://research-organisation.org/repository/item/201203/421/", + "as:subject": "<>", "id": "<>", "type": "Relationship" }, diff --git a/dspace-server-webapp/src/test/resources/org/dspace/app/rest/ldn_announce_review.json b/dspace-server-webapp/src/test/resources/org/dspace/app/rest/ldn_announce_review.json index 8f422c9039fe..c5203bee9433 100644 --- a/dspace-server-webapp/src/test/resources/org/dspace/app/rest/ldn_announce_review.json +++ b/dspace-server-webapp/src/test/resources/org/dspace/app/rest/ldn_announce_review.json @@ -12,7 +12,7 @@ "id": "<>", "ietf:cite-as": "https://doi.org/10.5555/12345680", "type": "sorg:AboutPage", - "url": { + "ietf:item": { "id": "https://research-organisation.org/repository/preprint/201203/421/content.pdf", "mediaType": "application/pdf", "type": [ diff --git a/dspace-server-webapp/src/test/resources/org/dspace/app/rest/ldn_offer_endorsement.json b/dspace-server-webapp/src/test/resources/org/dspace/app/rest/ldn_offer_endorsement.json index d977f2e6b7db..39f6411a5593 100644 --- a/dspace-server-webapp/src/test/resources/org/dspace/app/rest/ldn_offer_endorsement.json +++ b/dspace-server-webapp/src/test/resources/org/dspace/app/rest/ldn_offer_endorsement.json @@ -13,7 +13,7 @@ "id": "https://overlay-journal.com/articles/00001/", "ietf:cite-as": "https://doi.org/10.5555/12345680", "type": "sorg:AboutPage", - "url": { + "ietf:item": { "id": "https://research-organisation.org/repository/preprint/201203/421/content.pdf", "mediaType": "application/pdf", "type": [ diff --git a/dspace-server-webapp/src/test/resources/org/dspace/app/rest/ldn_offer_endorsement_badrequest.json b/dspace-server-webapp/src/test/resources/org/dspace/app/rest/ldn_offer_endorsement_badrequest.json index e6e373f1c7cd..2371fc54c3a1 100644 --- a/dspace-server-webapp/src/test/resources/org/dspace/app/rest/ldn_offer_endorsement_badrequest.json +++ b/dspace-server-webapp/src/test/resources/org/dspace/app/rest/ldn_offer_endorsement_badrequest.json @@ -13,7 +13,7 @@ "id": "https://overlay-journal.com/articles/00001/", "ietf:cite-as": "https://doi.org/10.5555/12345680", "type": ["sorg:AboutPage"], - "url": { + "ietf:item": { "id": "https://research-organisation.org/repository/preprint/201203/421/content.pdf", "mediaType": "application/pdf", "type": [ diff --git a/dspace-server-webapp/src/test/resources/org/dspace/app/rest/ldn_offer_endorsement_object.json b/dspace-server-webapp/src/test/resources/org/dspace/app/rest/ldn_offer_endorsement_object.json index 8252d7f70102..7af079acba2e 100644 --- a/dspace-server-webapp/src/test/resources/org/dspace/app/rest/ldn_offer_endorsement_object.json +++ b/dspace-server-webapp/src/test/resources/org/dspace/app/rest/ldn_offer_endorsement_object.json @@ -12,7 +12,7 @@ "id": "<>", "ietf:cite-as": "https://doi.org/10.5555/12345680", "type": ["sorg:AboutPage"], - "url": { + "ietf:item": { "id": "https://research-organisation.org/repository/preprint/201203/421/content.pdf", "mediaType": "application/pdf", "type": [ diff --git a/dspace-server-webapp/src/test/resources/org/dspace/app/rest/ldn_offer_review.json b/dspace-server-webapp/src/test/resources/org/dspace/app/rest/ldn_offer_review.json index d1d5ba5601f6..9a20adcda5d6 100644 --- a/dspace-server-webapp/src/test/resources/org/dspace/app/rest/ldn_offer_review.json +++ b/dspace-server-webapp/src/test/resources/org/dspace/app/rest/ldn_offer_review.json @@ -13,7 +13,7 @@ "id": "<>", "ietf:cite-as": "https://doi.org/10.5555/12345680", "type": "sorg:AboutPage", - "url": { + "ietf:item": { "id": "url.pdf", "mediaType": "applicationpdf", "type": [ diff --git a/dspace-server-webapp/src/test/resources/org/dspace/app/rest/ldn_offer_review2.json b/dspace-server-webapp/src/test/resources/org/dspace/app/rest/ldn_offer_review2.json index d60e32f04f2b..973ea946f6f4 100644 --- a/dspace-server-webapp/src/test/resources/org/dspace/app/rest/ldn_offer_review2.json +++ b/dspace-server-webapp/src/test/resources/org/dspace/app/rest/ldn_offer_review2.json @@ -13,7 +13,7 @@ "id": "<>", "ietf:cite-as": "https://doi.org/10.5555/12345680", "type": "sorg:AboutPage", - "url": { + "ietf:item": { "id": "url.pdf", "mediaType": "applicationpdf", "type": [ diff --git a/dspace-server-webapp/src/test/resources/org/dspace/app/rest/ldn_offer_review3.json b/dspace-server-webapp/src/test/resources/org/dspace/app/rest/ldn_offer_review3.json new file mode 100644 index 000000000000..5b857fa664a5 --- /dev/null +++ b/dspace-server-webapp/src/test/resources/org/dspace/app/rest/ldn_offer_review3.json @@ -0,0 +1,39 @@ +{ + "@context": [ + "https://www.w3.org/ns/activitystreams", + "https://purl.org/coar/notify" + ], + "actor": { + "id": "https://orcid.org/0000-0002-1825-0097", + "name": "Josiah Carberry", + "type": "Person" + }, + "id": "urn:uuid:0370c0fb-bb78-4a9b-87f5-bed308a509da", + "object": { + "id": "<>", + "ietf:cite-as": "https://doi.org/10.5555/12345680", + "type": "sorg:AboutPage", + "ietf:item": { + "id": "url.pdf", + "mediaType": "applicationpdf", + "type": [ + "Article", + "sorg:ScholarlyArticle" + ] + } + }, + "origin": { + "id": "https://research-organisation.org/repository", + "inbox": "https://review-service.com/inbox/", + "type": "Service" + }, + "target": { + "id": "https://review-service.com/system", + "inbox": "https://review-service.com/inbox/", + "type": "Service" + }, + "type": [ + "Offer", + "coar-notify:ReviewAction" + ] +} \ No newline at end of file diff --git a/dspace-server-webapp/src/test/resources/org/dspace/app/rest/ldn_origin_inbox_unregistered.json b/dspace-server-webapp/src/test/resources/org/dspace/app/rest/ldn_origin_inbox_unregistered.json index 30c5cc559034..fdeb340fd2f4 100644 --- a/dspace-server-webapp/src/test/resources/org/dspace/app/rest/ldn_origin_inbox_unregistered.json +++ b/dspace-server-webapp/src/test/resources/org/dspace/app/rest/ldn_origin_inbox_unregistered.json @@ -12,7 +12,7 @@ "id": "<>", "ietf:cite-as": "https://doi.org/10.5555/12345680", "type": ["sorg:AboutPage"], - "url": { + "ietf:item": { "id": "https://research-organisation.org/repository/preprint/201203/421/content.pdf", "mediaType": "application/pdf", "type": [ diff --git a/dspace-server-webapp/src/test/resources/org/dspace/app/rest/ror-record.json b/dspace-server-webapp/src/test/resources/org/dspace/app/rest/ror-record.json index 51924485b347..2ed43a01535a 100644 --- a/dspace-server-webapp/src/test/resources/org/dspace/app/rest/ror-record.json +++ b/dspace-server-webapp/src/test/resources/org/dspace/app/rest/ror-record.json @@ -40,7 +40,7 @@ }, "license": { "attribution": "Data from geonames.org under a CC-BY 3.0 license", - "license": "http://creativecommons.org/licenses/by/3.0/" + "license": "https://creativecommons.org/licenses/by/3.0/" }, "nuts_level1": { "name": null, @@ -104,4 +104,4 @@ "all": "grid.267310.1" } } -} \ No newline at end of file +} diff --git a/dspace-server-webapp/src/test/resources/org/dspace/app/rest/ror-records.json b/dspace-server-webapp/src/test/resources/org/dspace/app/rest/ror-records.json index 91ce8d33e084..d36f7ba74e5c 100644 --- a/dspace-server-webapp/src/test/resources/org/dspace/app/rest/ror-records.json +++ b/dspace-server-webapp/src/test/resources/org/dspace/app/rest/ror-records.json @@ -54,7 +54,7 @@ }, "license": { "attribution": "Data from geonames.org under a CC-BY 3.0 license", - "license": "http://creativecommons.org/licenses/by/3.0/" + "license": "https://creativecommons.org/licenses/by/3.0/" }, "nuts_level1": { "name": null, @@ -167,7 +167,7 @@ }, "license": { "attribution": "Data from geonames.org under a CC-BY 3.0 license", - "license": "http://creativecommons.org/licenses/by/3.0/" + "license": "https://creativecommons.org/licenses/by/3.0/" }, "nuts_level1": { "name": null, @@ -299,7 +299,7 @@ }, "license": { "attribution": "Data from geonames.org under a CC-BY 3.0 license", - "license": "http://creativecommons.org/licenses/by/3.0/" + "license": "https://creativecommons.org/licenses/by/3.0/" }, "nuts_level1": { "name": null, @@ -418,7 +418,7 @@ }, "license": { "attribution": "Data from geonames.org under a CC-BY 3.0 license", - "license": "http://creativecommons.org/licenses/by/3.0/" + "license": "https://creativecommons.org/licenses/by/3.0/" }, "nuts_level1": { "name": null, @@ -533,7 +533,7 @@ }, "license": { "attribution": "Data from geonames.org under a CC-BY 3.0 license", - "license": "http://creativecommons.org/licenses/by/3.0/" + "license": "https://creativecommons.org/licenses/by/3.0/" }, "nuts_level1": { "name": null, @@ -639,7 +639,7 @@ }, "license": { "attribution": "Data from geonames.org under a CC-BY 3.0 license", - "license": "http://creativecommons.org/licenses/by/3.0/" + "license": "https://creativecommons.org/licenses/by/3.0/" }, "nuts_level1": { "name": null, @@ -751,7 +751,7 @@ }, "license": { "attribution": "Data from geonames.org under a CC-BY 3.0 license", - "license": "http://creativecommons.org/licenses/by/3.0/" + "license": "https://creativecommons.org/licenses/by/3.0/" }, "nuts_level1": { "name": null, @@ -856,7 +856,7 @@ }, "license": { "attribution": "Data from geonames.org under a CC-BY 3.0 license", - "license": "http://creativecommons.org/licenses/by/3.0/" + "license": "https://creativecommons.org/licenses/by/3.0/" }, "nuts_level1": { "name": null, @@ -987,7 +987,7 @@ }, "license": { "attribution": "Data from geonames.org under a CC-BY 3.0 license", - "license": "http://creativecommons.org/licenses/by/3.0/" + "license": "https://creativecommons.org/licenses/by/3.0/" }, "nuts_level1": { "name": null, @@ -1087,7 +1087,7 @@ }, "license": { "attribution": "Data from geonames.org under a CC-BY 3.0 license", - "license": "http://creativecommons.org/licenses/by/3.0/" + "license": "https://creativecommons.org/licenses/by/3.0/" }, "nuts_level1": { "name": null, @@ -1199,7 +1199,7 @@ }, "license": { "attribution": "Data from geonames.org under a CC-BY 3.0 license", - "license": "http://creativecommons.org/licenses/by/3.0/" + "license": "https://creativecommons.org/licenses/by/3.0/" }, "nuts_level1": { "name": null, @@ -1305,7 +1305,7 @@ }, "license": { "attribution": "Data from geonames.org under a CC-BY 3.0 license", - "license": "http://creativecommons.org/licenses/by/3.0/" + "license": "https://creativecommons.org/licenses/by/3.0/" }, "nuts_level1": { "name": null, @@ -1417,7 +1417,7 @@ }, "license": { "attribution": "Data from geonames.org under a CC-BY 3.0 license", - "license": "http://creativecommons.org/licenses/by/3.0/" + "license": "https://creativecommons.org/licenses/by/3.0/" }, "nuts_level1": { "name": null, @@ -1525,7 +1525,7 @@ }, "license": { "attribution": "Data from geonames.org under a CC-BY 3.0 license", - "license": "http://creativecommons.org/licenses/by/3.0/" + "license": "https://creativecommons.org/licenses/by/3.0/" }, "nuts_level1": { "name": null, @@ -1627,7 +1627,7 @@ }, "license": { "attribution": "Data from geonames.org under a CC-BY 3.0 license", - "license": "http://creativecommons.org/licenses/by/3.0/" + "license": "https://creativecommons.org/licenses/by/3.0/" }, "nuts_level1": { "name": "SOUTH EAST (ENGLAND)", @@ -1753,7 +1753,7 @@ }, "license": { "attribution": "Data from geonames.org under a CC-BY 3.0 license", - "license": "http://creativecommons.org/licenses/by/3.0/" + "license": "https://creativecommons.org/licenses/by/3.0/" }, "nuts_level1": { "name": null, @@ -1870,7 +1870,7 @@ }, "license": { "attribution": "Data from geonames.org under a CC-BY 3.0 license", - "license": "http://creativecommons.org/licenses/by/3.0/" + "license": "https://creativecommons.org/licenses/by/3.0/" }, "nuts_level1": { "name": null, @@ -1985,7 +1985,7 @@ }, "license": { "attribution": "Data from geonames.org under a CC-BY 3.0 license", - "license": "http://creativecommons.org/licenses/by/3.0/" + "license": "https://creativecommons.org/licenses/by/3.0/" }, "nuts_level1": { "name": null, @@ -2100,7 +2100,7 @@ }, "license": { "attribution": "Data from geonames.org under a CC-BY 3.0 license", - "license": "http://creativecommons.org/licenses/by/3.0/" + "license": "https://creativecommons.org/licenses/by/3.0/" }, "nuts_level1": { "name": null, @@ -2209,7 +2209,7 @@ }, "license": { "attribution": "Data from geonames.org under a CC-BY 3.0 license", - "license": "http://creativecommons.org/licenses/by/3.0/" + "license": "https://creativecommons.org/licenses/by/3.0/" }, "nuts_level1": { "name": null, @@ -2380,4 +2380,4 @@ } ] } -} \ No newline at end of file +} diff --git a/dspace-server-webapp/src/test/resources/org/dspace/app/rest/scopus-empty-resp.xml b/dspace-server-webapp/src/test/resources/org/dspace/app/rest/scopus-empty-resp.xml index b2b4264b5c34..3e0ecbead350 100644 --- a/dspace-server-webapp/src/test/resources/org/dspace/app/rest/scopus-empty-resp.xml +++ b/dspace-server-webapp/src/test/resources/org/dspace/app/rest/scopus-empty-resp.xml @@ -3,9 +3,11 @@ 0 0 0 - - + + Result set was empty - \ No newline at end of file + diff --git a/dspace-server-webapp/src/test/resources/org/dspace/license/cc-license-rdf.xml b/dspace-server-webapp/src/test/resources/org/dspace/license/cc-license-rdf.xml index 5ff75ee4c747..2051406b550d 100644 --- a/dspace-server-webapp/src/test/resources/org/dspace/license/cc-license-rdf.xml +++ b/dspace-server-webapp/src/test/resources/org/dspace/license/cc-license-rdf.xml @@ -1,31 +1,31 @@ - http://creativecommons.org/licenses/by-nc-sa/4.0/ + https://creativecommons.org/licenses/by-nc-sa/4.0/ Attribution-NonCommercial-ShareAlike 4.0 International false - - - - - - - - + + + + + + + + - - - - - - - - + + + + + + + + - Creative Commons License
This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License. + Creative Commons License
This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License. diff --git a/dspace-services/pom.xml b/dspace-services/pom.xml index 214f5a53f789..c8f66a1bef93 100644 --- a/dspace-services/pom.xml +++ b/dspace-services/pom.xml @@ -70,7 +70,7 @@ - ${agnostic.build.dir}/test-classes/ + ${agnostic.build.dir}/test-classes @@ -98,13 +98,18 @@ - javax.servlet - javax.servlet-api + jakarta.servlet + jakarta.servlet-api provided - com.sun.mail - javax.mail + jakarta.mail + jakarta.mail-api + provided + + + org.eclipse.angus + jakarta.mail org.mockito @@ -149,8 +154,8 @@ commons-io - javax.annotation - javax.annotation-api + jakarta.annotation + jakarta.annotation-api diff --git a/dspace-services/src/main/java/org/dspace/servicemanager/DSpaceServiceManager.java b/dspace-services/src/main/java/org/dspace/servicemanager/DSpaceServiceManager.java index 313f676c5f6a..ce5e91576f6d 100644 --- a/dspace-services/src/main/java/org/dspace/servicemanager/DSpaceServiceManager.java +++ b/dspace-services/src/main/java/org/dspace/servicemanager/DSpaceServiceManager.java @@ -20,8 +20,8 @@ import java.util.LinkedList; import java.util.List; import java.util.Map; -import javax.annotation.PreDestroy; +import jakarta.annotation.PreDestroy; import org.apache.commons.lang3.ArrayUtils; import org.apache.logging.log4j.LogManager; import org.apache.logging.log4j.Logger; @@ -226,17 +226,12 @@ public void shutdown() { if (applicationContext != null) { try { + // This both closes the context and destroys all beans related to it applicationContext.close(); } catch (Exception e) { // keep going anyway log.warn("Exception closing ApplicationContext: {}", e.getMessage(), e); } - try { - applicationContext.destroy(); - } catch (Exception e) { - // keep going anyway - log.warn("Exception destroying ApplicationContext: {}", e.getMessage(), e); - } applicationContext = null; } diff --git a/dspace-services/src/main/java/org/dspace/servicemanager/config/DSpaceConfigurationPlaceholderConfigurer.java b/dspace-services/src/main/java/org/dspace/servicemanager/config/DSpaceConfigurationPlaceholderConfigurer.java index b85450dcd039..caa715e21bfb 100644 --- a/dspace-services/src/main/java/org/dspace/servicemanager/config/DSpaceConfigurationPlaceholderConfigurer.java +++ b/dspace-services/src/main/java/org/dspace/servicemanager/config/DSpaceConfigurationPlaceholderConfigurer.java @@ -8,7 +8,6 @@ package org.dspace.servicemanager.config; import org.apache.commons.configuration2.Configuration; -import org.apache.commons.configuration2.spring.ConfigurationPropertySource; import org.springframework.context.support.PropertySourcesPlaceholderConfigurer; import org.springframework.core.env.MutablePropertySources; @@ -27,8 +26,8 @@ public class DSpaceConfigurationPlaceholderConfigurer extends PropertySourcesPlaceholderConfigurer { public DSpaceConfigurationPlaceholderConfigurer(Configuration configuration) { - ConfigurationPropertySource apacheCommonsConfigPropertySource = - new ConfigurationPropertySource(configuration.getClass().getName(), configuration); + DSpaceConfigurationPropertySource apacheCommonsConfigPropertySource = + new DSpaceConfigurationPropertySource(configuration.getClass().getName(), configuration); MutablePropertySources propertySources = new MutablePropertySources(); propertySources.addLast(apacheCommonsConfigPropertySource); setPropertySources(propertySources); diff --git a/dspace-services/src/main/java/org/dspace/servicemanager/config/DSpaceConfigurationPropertySource.java b/dspace-services/src/main/java/org/dspace/servicemanager/config/DSpaceConfigurationPropertySource.java new file mode 100644 index 000000000000..d3394399301f --- /dev/null +++ b/dspace-services/src/main/java/org/dspace/servicemanager/config/DSpaceConfigurationPropertySource.java @@ -0,0 +1,64 @@ +/* + * Licensed to the Apache Software Foundation (ASF) under one or more + * contributor license agreements. See the NOTICE file distributed with + * this work for additional information regarding copyright ownership. + * The ASF licenses this file to You under the Apache License, Version 2.0 + * (the "License"); you may not use this file except in compliance with + * the License. You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + */ + +package org.dspace.servicemanager.config; + +import java.util.ArrayList; +import java.util.List; + +import org.apache.commons.configuration2.Configuration; +import org.apache.commons.lang3.ArrayUtils; +import org.springframework.core.env.EnumerablePropertySource; + +/** + * Allow use of Apache Commons Configuration Objects as Spring PropertySources. + * This class is a temporary copy of the ConfigurationPropertySource class in the Apache Commons Configuration + * project needed until to fix the issue https://issues.apache.org/jira/browse/CONFIGURATION-846 + */ +public class DSpaceConfigurationPropertySource extends EnumerablePropertySource { + + protected DSpaceConfigurationPropertySource(final String name) { + super(name); + } + + public DSpaceConfigurationPropertySource(final String name, final Configuration source) { + super(name, source); + } + + @Override + public Object getProperty(final String name) { + if (source.getProperty(name) != null) { + final String[] propValue = source.getStringArray(name); + if (propValue == null || propValue.length == 0) { + return ""; + } else if (propValue.length == 1) { + return propValue[0]; + } else { + return propValue; + } + } else { + return null; + } + } + + @Override + public String[] getPropertyNames() { + final List keys = new ArrayList<>(); + source.getKeys().forEachRemaining(keys::add); + return keys.toArray(ArrayUtils.EMPTY_STRING_ARRAY); + } +} diff --git a/dspace-services/src/main/java/org/dspace/services/EmailService.java b/dspace-services/src/main/java/org/dspace/services/EmailService.java index 1d09f06c1368..08dfd52815d6 100644 --- a/dspace-services/src/main/java/org/dspace/services/EmailService.java +++ b/dspace-services/src/main/java/org/dspace/services/EmailService.java @@ -8,7 +8,7 @@ package org.dspace.services; -import javax.mail.Session; +import jakarta.mail.Session; /** * @author mwood diff --git a/dspace-services/src/main/java/org/dspace/services/RequestService.java b/dspace-services/src/main/java/org/dspace/services/RequestService.java index d28a04ecf623..78233f9bdb35 100644 --- a/dspace-services/src/main/java/org/dspace/services/RequestService.java +++ b/dspace-services/src/main/java/org/dspace/services/RequestService.java @@ -8,9 +8,9 @@ package org.dspace.services; import java.util.UUID; -import javax.servlet.ServletRequest; -import javax.servlet.ServletResponse; +import jakarta.servlet.ServletRequest; +import jakarta.servlet.ServletResponse; import org.dspace.services.model.Request; import org.dspace.services.model.RequestInterceptor; diff --git a/dspace-services/src/main/java/org/dspace/services/email/EmailServiceImpl.java b/dspace-services/src/main/java/org/dspace/services/email/EmailServiceImpl.java index 878e34cfade1..e26954ff0259 100644 --- a/dspace-services/src/main/java/org/dspace/services/email/EmailServiceImpl.java +++ b/dspace-services/src/main/java/org/dspace/services/email/EmailServiceImpl.java @@ -8,15 +8,15 @@ package org.dspace.services.email; import java.util.Properties; -import javax.annotation.PostConstruct; -import javax.mail.Authenticator; -import javax.mail.PasswordAuthentication; -import javax.mail.Session; import javax.naming.InitialContext; import javax.naming.NameNotFoundException; import javax.naming.NamingException; import javax.naming.NoInitialContextException; +import jakarta.annotation.PostConstruct; +import jakarta.mail.Authenticator; +import jakarta.mail.PasswordAuthentication; +import jakarta.mail.Session; import org.apache.commons.lang3.StringUtils; import org.apache.logging.log4j.LogManager; import org.apache.logging.log4j.Logger; @@ -26,7 +26,7 @@ import org.springframework.beans.factory.annotation.Autowired; /** - * Provides mail sending services through JavaMail. If a {@link javax.mail.Session} + * Provides mail sending services through JavaMail. If a {@link jakarta.mail.Session} * instance is provided through JNDI, it will be used. If not, then a session * will be created from DSpace configuration data ({@code mail.server} etc.) * diff --git a/dspace-services/src/main/java/org/dspace/services/events/SystemEventService.java b/dspace-services/src/main/java/org/dspace/services/events/SystemEventService.java index 9920d65d11f3..f51b4ca14831 100644 --- a/dspace-services/src/main/java/org/dspace/services/events/SystemEventService.java +++ b/dspace-services/src/main/java/org/dspace/services/events/SystemEventService.java @@ -13,7 +13,7 @@ import java.util.concurrent.ExecutorService; import java.util.concurrent.Executors; import java.util.function.Supplier; -import javax.annotation.PreDestroy; +import jakarta.annotation.PreDestroy; import com.google.common.util.concurrent.MoreExecutors; import org.apache.commons.lang3.ArrayUtils; diff --git a/dspace-services/src/main/java/org/dspace/services/model/Request.java b/dspace-services/src/main/java/org/dspace/services/model/Request.java index ed9fb298b808..14a8207ca6b7 100644 --- a/dspace-services/src/main/java/org/dspace/services/model/Request.java +++ b/dspace-services/src/main/java/org/dspace/services/model/Request.java @@ -7,10 +7,10 @@ */ package org.dspace.services.model; -import javax.servlet.ServletRequest; -import javax.servlet.ServletResponse; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; +import jakarta.servlet.ServletRequest; +import jakarta.servlet.ServletResponse; +import jakarta.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletResponse; public interface Request { public String getRequestId(); diff --git a/dspace-services/src/main/java/org/dspace/services/model/Session.java b/dspace-services/src/main/java/org/dspace/services/model/Session.java index 78b5f5c58671..ad6f6f032b25 100644 --- a/dspace-services/src/main/java/org/dspace/services/model/Session.java +++ b/dspace-services/src/main/java/org/dspace/services/model/Session.java @@ -8,7 +8,8 @@ package org.dspace.services.model; import java.util.Map; -import javax.servlet.http.HttpSession; + +import jakarta.servlet.http.HttpSession; /** * Represents a user's session (login session) in the system. Can hold diff --git a/dspace-services/src/main/java/org/dspace/services/sessions/StatelessRequestServiceImpl.java b/dspace-services/src/main/java/org/dspace/services/sessions/StatelessRequestServiceImpl.java index 9b67cd4bfcc6..9910b05dfaa1 100644 --- a/dspace-services/src/main/java/org/dspace/services/sessions/StatelessRequestServiceImpl.java +++ b/dspace-services/src/main/java/org/dspace/services/sessions/StatelessRequestServiceImpl.java @@ -15,11 +15,11 @@ import java.util.Objects; import java.util.UUID; import java.util.concurrent.ConcurrentHashMap; -import javax.annotation.PostConstruct; -import javax.annotation.PreDestroy; -import javax.servlet.ServletRequest; -import javax.servlet.ServletResponse; +import jakarta.annotation.PostConstruct; +import jakarta.annotation.PreDestroy; +import jakarta.servlet.ServletRequest; +import jakarta.servlet.ServletResponse; import org.apache.commons.lang3.StringUtils; import org.apache.logging.log4j.LogManager; import org.apache.logging.log4j.Logger; diff --git a/dspace-services/src/main/java/org/dspace/services/sessions/model/HttpRequestImpl.java b/dspace-services/src/main/java/org/dspace/services/sessions/model/HttpRequestImpl.java index 184285704214..e2b79c5b3ef1 100644 --- a/dspace-services/src/main/java/org/dspace/services/sessions/model/HttpRequestImpl.java +++ b/dspace-services/src/main/java/org/dspace/services/sessions/model/HttpRequestImpl.java @@ -7,11 +7,10 @@ */ package org.dspace.services.sessions.model; -import javax.servlet.ServletRequest; -import javax.servlet.ServletResponse; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; - +import jakarta.servlet.ServletRequest; +import jakarta.servlet.ServletResponse; +import jakarta.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletResponse; import org.dspace.services.model.Request; public final class HttpRequestImpl extends AbstractRequestImpl implements Request { diff --git a/dspace-services/src/main/java/org/dspace/services/sessions/model/InternalRequestImpl.java b/dspace-services/src/main/java/org/dspace/services/sessions/model/InternalRequestImpl.java index ffc78daa0ac4..9b5b065991df 100644 --- a/dspace-services/src/main/java/org/dspace/services/sessions/model/InternalRequestImpl.java +++ b/dspace-services/src/main/java/org/dspace/services/sessions/model/InternalRequestImpl.java @@ -9,11 +9,11 @@ import java.util.HashMap; import java.util.Map; -import javax.servlet.ServletRequest; -import javax.servlet.ServletResponse; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; +import jakarta.servlet.ServletRequest; +import jakarta.servlet.ServletResponse; +import jakarta.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletResponse; import org.dspace.services.model.Request; public final class InternalRequestImpl extends AbstractRequestImpl implements Request { diff --git a/dspace-services/src/main/java/org/dspace/utils/DSpace.java b/dspace-services/src/main/java/org/dspace/utils/DSpace.java index 0a7ce941be00..a687bc9c8ee4 100644 --- a/dspace-services/src/main/java/org/dspace/utils/DSpace.java +++ b/dspace-services/src/main/java/org/dspace/utils/DSpace.java @@ -79,6 +79,14 @@ public RequestService getRequestService() { return getServiceManager().getServiceByName(RequestService.class.getName(), RequestService.class); } + /** + * Convenience to look up a service in the service manager. + * @see(ServiceManager#getServiceByName). + * + * @param Type of the service to be found. + * @param type Type of the service to be found. + * @return an instance of the service, or null if not found. + */ public T getSingletonService(Class type) { return getServiceManager().getServiceByName(type.getName(), type); } diff --git a/dspace-services/src/main/java/org/dspace/utils/servlet/DSpaceWebappServletFilter.java b/dspace-services/src/main/java/org/dspace/utils/servlet/DSpaceWebappServletFilter.java index 8707eb5e4c27..f5126fbb6c31 100644 --- a/dspace-services/src/main/java/org/dspace/utils/servlet/DSpaceWebappServletFilter.java +++ b/dspace-services/src/main/java/org/dspace/utils/servlet/DSpaceWebappServletFilter.java @@ -8,14 +8,14 @@ package org.dspace.utils.servlet; import java.io.IOException; -import javax.annotation.Priority; -import javax.servlet.Filter; -import javax.servlet.FilterChain; -import javax.servlet.FilterConfig; -import javax.servlet.ServletException; -import javax.servlet.ServletRequest; -import javax.servlet.ServletResponse; +import jakarta.annotation.Priority; +import jakarta.servlet.Filter; +import jakarta.servlet.FilterChain; +import jakarta.servlet.FilterConfig; +import jakarta.servlet.ServletException; +import jakarta.servlet.ServletRequest; +import jakarta.servlet.ServletResponse; import org.dspace.kernel.DSpaceKernel; import org.dspace.kernel.DSpaceKernelManager; import org.dspace.services.RequestService; @@ -35,7 +35,7 @@ public final class DSpaceWebappServletFilter implements Filter { /* (non-Javadoc) - * @see javax.servlet.Filter#init(javax.servlet.FilterConfig) + * @see jakarta.servlet.Filter#init(jakarta.servlet.FilterConfig) */ @Override public void init(FilterConfig filterConfig) throws ServletException { @@ -53,7 +53,7 @@ public void init(FilterConfig filterConfig) throws ServletException { } /* (non-Javadoc) - * @see javax.servlet.Filter#destroy() + * @see jakarta.servlet.Filter#destroy() */ @Override public void destroy() { @@ -63,8 +63,8 @@ public void destroy() { } /* (non-Javadoc) - * @see javax.servlet.Filter#doFilter(javax.servlet.ServletRequest, javax.servlet.ServletResponse, javax.servlet - * .FilterChain) + * @see jakarta.servlet.Filter#doFilter(jakarta.servlet.ServletRequest, jakarta.servlet.ServletResponse, + * jakarta.servlet.FilterChain) */ @Override public void doFilter(ServletRequest request, ServletResponse response, FilterChain chain) diff --git a/dspace-services/src/test/java/org/dspace/servicemanager/DSpaceServiceManagerTest.java b/dspace-services/src/test/java/org/dspace/servicemanager/DSpaceServiceManagerTest.java index f66d32bb3b15..3c0c8610f165 100644 --- a/dspace-services/src/test/java/org/dspace/servicemanager/DSpaceServiceManagerTest.java +++ b/dspace-services/src/test/java/org/dspace/servicemanager/DSpaceServiceManagerTest.java @@ -16,9 +16,9 @@ import java.util.HashMap; import java.util.List; import java.util.Map; -import javax.annotation.PostConstruct; -import javax.annotation.PreDestroy; +import jakarta.annotation.PostConstruct; +import jakarta.annotation.PreDestroy; import org.dspace.servicemanager.config.DSpaceConfigurationService; import org.dspace.servicemanager.example.ConcreteExample; import org.dspace.servicemanager.fakeservices.FakeService1; diff --git a/dspace-services/src/test/java/org/dspace/servicemanager/SampleAnnotationBean.java b/dspace-services/src/test/java/org/dspace/servicemanager/SampleAnnotationBean.java index e3d08100a4f1..f72d8b9c34e6 100644 --- a/dspace-services/src/test/java/org/dspace/servicemanager/SampleAnnotationBean.java +++ b/dspace-services/src/test/java/org/dspace/servicemanager/SampleAnnotationBean.java @@ -7,9 +7,8 @@ */ package org.dspace.servicemanager; -import javax.annotation.PostConstruct; -import javax.annotation.PreDestroy; - +import jakarta.annotation.PostConstruct; +import jakarta.annotation.PreDestroy; import org.dspace.servicemanager.example.ConcreteExample; import org.dspace.servicemanager.example.ServiceExample; import org.springframework.beans.factory.annotation.Autowired; diff --git a/dspace-services/src/test/java/org/dspace/servicemanager/fakeservices/FakeService1.java b/dspace-services/src/test/java/org/dspace/servicemanager/fakeservices/FakeService1.java index eafbd8ac8b80..ba580f20853b 100644 --- a/dspace-services/src/test/java/org/dspace/servicemanager/fakeservices/FakeService1.java +++ b/dspace-services/src/test/java/org/dspace/servicemanager/fakeservices/FakeService1.java @@ -10,9 +10,9 @@ import java.io.Serializable; import java.util.List; import java.util.Map; -import javax.annotation.PostConstruct; -import javax.annotation.PreDestroy; +import jakarta.annotation.PostConstruct; +import jakarta.annotation.PreDestroy; import org.dspace.kernel.mixins.ConfigChangeListener; import org.dspace.kernel.mixins.ServiceChangeListener; import org.dspace.services.ConfigurationService; diff --git a/dspace-services/src/test/java/org/dspace/servicemanager/fakeservices/FakeService2.java b/dspace-services/src/test/java/org/dspace/servicemanager/fakeservices/FakeService2.java index 5a9024b9a792..399029ad9b04 100644 --- a/dspace-services/src/test/java/org/dspace/servicemanager/fakeservices/FakeService2.java +++ b/dspace-services/src/test/java/org/dspace/servicemanager/fakeservices/FakeService2.java @@ -8,7 +8,8 @@ package org.dspace.servicemanager.fakeservices; import java.io.Serializable; -import javax.annotation.PostConstruct; + +import jakarta.annotation.PostConstruct; /** * Simple fake service 2 diff --git a/dspace-services/src/test/java/org/dspace/services/email/EmailServiceImplTest.java b/dspace-services/src/test/java/org/dspace/services/email/EmailServiceImplTest.java index 958e4f810641..97656af2f402 100644 --- a/dspace-services/src/test/java/org/dspace/services/email/EmailServiceImplTest.java +++ b/dspace-services/src/test/java/org/dspace/services/email/EmailServiceImplTest.java @@ -12,10 +12,9 @@ import static org.junit.Assert.assertNotNull; import static org.junit.Assert.assertNull; -import javax.mail.MessagingException; -import javax.mail.PasswordAuthentication; -import javax.mail.Session; - +import jakarta.mail.MessagingException; +import jakarta.mail.PasswordAuthentication; +import jakarta.mail.Session; import org.dspace.services.ConfigurationService; import org.dspace.services.EmailService; import org.dspace.test.DSpaceAbstractKernelTest; diff --git a/dspace-sword/pom.xml b/dspace-sword/pom.xml index ffbc5d2213ab..4860676dbfb7 100644 --- a/dspace-sword/pom.xml +++ b/dspace-sword/pom.xml @@ -45,11 +45,6 @@ - - org.dspace - dspace-api-lang - - org.springframework.boot @@ -68,18 +63,13 @@ jaxen - - - commons-fileupload - commons-fileupload - org.apache.httpcomponents httpclient - javax.servlet - javax.servlet-api + jakarta.servlet + jakarta.servlet-api provided @@ -96,10 +86,10 @@ org.apache.logging.log4j log4j-core - + org.apache.logging.log4j log4j-web - + xom diff --git a/dspace-sword/src/main/java/org/purl/sword/base/Deposit.java b/dspace-sword/src/main/java/org/purl/sword/base/Deposit.java index 2473d28e4a00..b771ffc5afc4 100644 --- a/dspace-sword/src/main/java/org/purl/sword/base/Deposit.java +++ b/dspace-sword/src/main/java/org/purl/sword/base/Deposit.java @@ -10,8 +10,8 @@ import java.io.File; import java.util.regex.Matcher; import java.util.regex.Pattern; -import javax.servlet.http.HttpServletResponse; +import jakarta.servlet.http.HttpServletResponse; import org.apache.logging.log4j.Logger; /** diff --git a/dspace-sword/src/main/java/org/purl/sword/base/HttpHeaders.java b/dspace-sword/src/main/java/org/purl/sword/base/HttpHeaders.java index 9a5aacc5a3bb..44233138c744 100644 --- a/dspace-sword/src/main/java/org/purl/sword/base/HttpHeaders.java +++ b/dspace-sword/src/main/java/org/purl/sword/base/HttpHeaders.java @@ -7,7 +7,7 @@ */ package org.purl.sword.base; -import javax.servlet.http.HttpServletResponse; +import jakarta.servlet.http.HttpServletResponse; /** * Definition of the additional HTTP Header tags that will be used in diff --git a/dspace-sword/src/main/java/org/purl/sword/client/ServletClient.java b/dspace-sword/src/main/java/org/purl/sword/client/ServletClient.java deleted file mode 100644 index 963e9637dd72..000000000000 --- a/dspace-sword/src/main/java/org/purl/sword/client/ServletClient.java +++ /dev/null @@ -1,455 +0,0 @@ -/** - * The contents of this file are subject to the license and copyright - * detailed in the LICENSE and NOTICE files at the root of the source - * tree and available online at - * - * http://www.dspace.org/license/ - */ - -/** - * Copyright (c) 2008, Aberystwyth University - * All rights reserved. - * Redistribution and use in source and binary forms, with or without - * modification, are permitted provided that the following conditions - * are met: - * - * - Redistributions of source code must retain the above - * copyright notice, this list of conditions and the - * following disclaimer. - * - * - Redistributions in binary form must reproduce the above copyright - * notice, this list of conditions and the following disclaimer in - * the documentation and/or other materials provided with the - * distribution. - * - * - Neither the name of the Centre for Advanced Software and - * Intelligent Systems (CASIS) nor the names of its - * contributors may be used to endorse or promote products derived - * from this software without specific prior written permission. - * - * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - * "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - * LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR - * A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT - * OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, - * SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT - * LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, - * DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON - * ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR - * TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF - * THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF - * SUCH DAMAGE. - */ - -package org.purl.sword.client; - -import java.io.File; -import java.io.IOException; -import java.net.URL; -import java.util.Iterator; -import java.util.List; -import javax.servlet.ServletException; -import javax.servlet.http.HttpServlet; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; - -import org.apache.commons.fileupload.FileItem; -import org.apache.commons.fileupload.FileItemFactory; -import org.apache.commons.fileupload.disk.DiskFileItemFactory; -import org.apache.commons.fileupload.servlet.ServletFileUpload; -import org.purl.sword.base.DepositResponse; -import org.purl.sword.base.SWORDEntry; -import org.purl.sword.base.ServiceDocument; - -/** - * Example client that runs as a Servlet. - * - * @author Stuart Lewis - */ -public class ServletClient extends HttpServlet { - - /** - * The user agent name of this library - */ - public static final String userAgent = "SWORDAPP Java Client: SWORD version 1.3 compatible (http://sourceforge" + - ".net/projects/sword-app/)"; - - /** - * Temporary directory. - */ - private String tempDirectory; - - /** - * List of urls for the destination services to access. - */ - private String[] urls; - - /** - * Used to determine if a proxy value should be set. - */ - private boolean useProxy = false; - - /** - * The proxy host name. - */ - private String pHost; - - /** - * The proxy port name. - */ - private int pPort; - - /** Counter used during Deposit information. */ - private static int counter = 0; - - /** - * Initialise the servlet. - */ - public void init() { - tempDirectory = getServletContext().getInitParameter( - "upload-temp-directory"); - if ((tempDirectory == null) || (tempDirectory.equals(""))) { - tempDirectory = System.getProperty("java.io.tmpdir"); - } - String lots = getServletContext().getInitParameter("client-urls"); - urls = lots.split(","); - - pHost = getServletContext().getInitParameter("proxy-host"); - String pPortstr = getServletContext().getInitParameter("proxy-port"); - if (((pHost != null) && (!pHost.equals(""))) - && ((pPortstr != null) && (!pPortstr.equals("")))) { - try { - pPort = Integer.parseInt(pPortstr); - useProxy = true; - } catch (Exception e) { - // Port number not numeric - } - } - } - - /** - * Handle a get request. Simply show the default form (form.jsp) - * - * @param request The request details - * @param response The response to write to. - * - * @throws ServletException - * An exception that provides information on a database access error or other errors. - * @throws IOException - * A general class of exceptions produced by failed or interrupted I/O operations. - */ - protected void doGet(HttpServletRequest request, - HttpServletResponse response) throws ServletException, IOException { - // Get request, so show the default page - request.setAttribute("urls", urls); - request.getRequestDispatcher("form.jsp").forward(request, response); - } - - /** - * Process the post. Determine if the request is for a post or service - * document. Then, dispatch the request to the appropriate handler. - * - * @param request The request details. - * @param response The response to write to. - * - * @throws ServletException - * An exception that provides information on a database access error or other errors. - * @throws IOException - * A general class of exceptions produced by failed or interrupted I/O operations. - */ - - protected void doPost(HttpServletRequest request, - HttpServletResponse response) throws ServletException, IOException { - if (request.getParameter("servicedocument") != null) { - this.doServiceDocument(request, response); - } else if (request.getParameter("deposit") != null) { - request.setAttribute("url", request.getParameter("url")); - request.setAttribute("u", request.getParameter("u")); - request.setAttribute("p", request.getParameter("p")); - request.setAttribute("obo", request.getParameter("obo")); - request.setAttribute("abstract", request.getParameter("abstract")); - request.setAttribute("policy", request.getParameter("policy")); - request.setAttribute("treatment", request.getParameter("treatment")); - request.setAttribute("mediation", request.getParameter("mediation")); - request.setAttribute("accepts", request.getParameter("accepts")); - request.setAttribute("acceptsp", request.getParameter("acceptsp")); - request.setAttribute("maxuploadsize", request.getParameter("maxuploadsize")); - request.getRequestDispatcher("depositform.jsp").forward(request, response); - } else if (ServletFileUpload.isMultipartContent(request)) { - this.doDeposit(request, response); - } else { - request.setAttribute("urls", urls); - request.getRequestDispatcher("form.jsp").forward(request, response); - } - } - - /** - * Process the request for a service document. - * - * @param request The request details. - * @param response The response to write to. - * - * @throws ServletException - * An exception that provides information on a database access error or other errors. - * @throws IOException - * A general class of exceptions produced by failed or interrupted I/O operations. - */ - - private void doServiceDocument(HttpServletRequest request, - HttpServletResponse response) throws ServletException, IOException { - // Get the service document - Client client = new Client(); - // Which URL do we want? - URL url = new URL(request.getParameter("url")); - String theUrl = request.getParameter("url"); - - if ((request.getParameter("ownurl") != null) - && (!request.getParameter("ownurl").equals(""))) { - url = new URL(request.getParameter("ownurl")); - theUrl = request.getParameter("ownurl"); - } - - int port = url.getPort(); - if (port == -1) { - port = 80; - } - - // Set up the server - client.setServer(url.getHost(), port); - client.setCredentials(request.getParameter("u"), request.getParameter("p")); - if (useProxy) { - client.setProxy(pHost, pPort); - } - - try { - ServiceDocument sd = client.getServiceDocument(theUrl, - request.getParameter("obo")); - - // Set the status - Status status = client.getStatus(); - request.setAttribute("status", status.toString()); - if (status.getCode() == 200) { - // Set the debug response - String xml = sd.marshall(); - - String validateXml = xml; - validateXml = validateXml.replaceAll("&", "&"); - validateXml = validateXml.replaceAll("<", "<"); - validateXml = validateXml.replaceAll(">", ">"); - validateXml = validateXml.replaceAll("\"", """); - validateXml = validateXml.replaceAll("'", "'"); - request.setAttribute("xmlValidate", validateXml); // for passing to validation - - xml = xml.replaceAll("<", "<"); - xml = xml.replaceAll(">", ">"); - request.setAttribute("xml", xml); - - // Set the ServiceDocument and associated values - request.setAttribute("sd", sd); - request.setAttribute("sdURL", theUrl); - request.setAttribute("u", request.getParameter("u")); - request.setAttribute("p", request.getParameter("p")); - request.setAttribute("sdOBO", request.getParameter("obo")); - request.getRequestDispatcher("servicedocument.jsp").forward( - request, response); - return; - } else { - request.setAttribute("error", status.getCode() + " " - + status.getMessage()); - request.setAttribute("urls", urls); - request.getRequestDispatcher("form.jsp").forward(request, - response); - return; - } - } catch (SWORDClientException e) { - e.printStackTrace(); - request.setAttribute("error", e.toString()); - request.setAttribute("urls", urls); - request.getRequestDispatcher("form.jsp").forward(request, response); - } - } - - /** - * Process a deposit. - * - * @param request The request details. - * @param response The response to output to. - * - * @throws ServletException - * An exception that provides information on a database access error or other errors. - * @throws IOException - * A general class of exceptions produced by failed or interrupted I/O operations. - */ - private void doDeposit(HttpServletRequest request, - HttpServletResponse response) throws ServletException, IOException { - // Do the deposit - Client client = new Client(); - try { - PostMessage message = new PostMessage(); - message.setUserAgent(ClientConstants.SERVICE_NAME); - - // Get the file - FileItemFactory factory = new DiskFileItemFactory(); - - // Create a new file upload handler - ServletFileUpload upload = new ServletFileUpload(factory); - - // Parse the request - List items = upload.parseRequest(request); - Iterator iter = items.iterator(); - String u = null; - String p = null; - String contentDisposition = null; - String filetype = null; - boolean useMD5 = false; - boolean errorMD5 = false; - boolean verbose = false; - boolean noOp = false; - boolean login = false; - while (iter.hasNext()) { - FileItem item = iter.next(); - if (item.isFormField()) { - String name = item.getFieldName(); - String value = item.getString(); - if (name.equals("url")) { - message.setDestination(value); - URL url = new URL(value); - int port = url.getPort(); - if (port == -1) { - port = 80; - } - client.setServer(url.getHost(), port); - } else if (name.equals("usemd5")) { - useMD5 = true; - } else if (name.equals("errormd5")) { - errorMD5 = true; - } else if (name.equals("verbose")) { - verbose = true; - } else if (name.equals("noop")) { - noOp = true; - } else if (name.equals("obo")) { - message.setOnBehalfOf(value); - } else if (name.equals("slug")) { - if ((value != null) && (!value.trim().equals(""))) { - message.setSlug(value); - } - } else if (name.equals("cd")) { - contentDisposition = value; - } else if (name.equals("filetype")) { - filetype = value; - } else if (name.equals("formatnamespace")) { - if ((value != null) && (!value.trim().equals(""))) { - message.setFormatNamespace(value); - } - } else if (name.equals("u")) { - u = value; - login = true; - request.setAttribute("u", value); - } else if (name.equals("p")) { - p = value; - login = true; - } - request.setAttribute(name, value); - } else { - String fname = tempDirectory + File.separator + - "ServletClient-" + counter++; - if ((contentDisposition != null) && (!contentDisposition.equals(""))) { - fname = tempDirectory + File.separator + contentDisposition; - } - - File uploadedFile = new File(fname); - item.write(uploadedFile); - message.setFilepath(fname); - - if ((filetype == null) || (filetype.trim().equals(""))) { - message.setFiletype(item.getContentType()); - } else { - message.setFiletype(filetype); - } - } - } - - if (login) { - client.setCredentials(u, p); - } - - if (useProxy) { - client.setProxy(pHost, pPort); - } - - message.setUseMD5(useMD5); - message.setChecksumError(errorMD5); - message.setVerbose(verbose); - message.setNoOp(noOp); - - // Post the file - DepositResponse resp = client.postFile(message); - - // Set the status - Status status = client.getStatus(); - request.setAttribute("status", status.toString()); - if ((status.getCode() == 201) || (status.getCode() == 202)) { - // Set the debug response - String xml = resp.marshall(); - - String validateXml = xml; - validateXml = validateXml.replaceAll("&", "&"); - validateXml = validateXml.replaceAll("<", "<"); - validateXml = validateXml.replaceAll(">", ">"); - validateXml = validateXml.replaceAll("\"", """); - validateXml = validateXml.replaceAll("'", "'"); - request.setAttribute("xmlValidate", validateXml); // for passing to validation - - xml = xml.replaceAll("<", "<"); - xml = xml.replaceAll(">", ">"); - request.setAttribute("xml", xml); - SWORDEntry se = resp.getEntry(); - request.setAttribute("id", se.getId()); - request.setAttribute("authors", se.getAuthors()); - request.setAttribute("contributors", se.getContributors()); - request.setAttribute("title", se.getTitle().getContent()); - request.setAttribute("updated", se.getUpdated()); - request.setAttribute("categories", se.getCategories()); - request.setAttribute("treatment", se.getTreatment()); - request.setAttribute("summary", se.getSummary().getContent()); - request.setAttribute("generator", se.getGenerator().getContent()); - request.setAttribute("userAgent", se.getUserAgent()); - request.setAttribute("packaging", se.getPackaging()); - request.setAttribute("links", se.getLinks()); - request.setAttribute("location", resp.getLocation()); - - // Set the ServiceDocument and associated values - request.getRequestDispatcher("deposit.jsp").forward(request, response); - return; - } else { - String error = status.getCode() + " " + status.getMessage() + " - "; - try { - error += resp.getEntry().getSummary().getContent(); - } catch (Exception e) { - // Do nothing - we have default error message - e.printStackTrace(); - } - request.setAttribute("error", error); - - // Try and get an error document in xml - String xml = resp.marshall(); - xml = xml.replaceAll("<", "<"); - xml = xml.replaceAll(">", ">"); - request.setAttribute("xml", xml); - - request.getRequestDispatcher("depositform.jsp").forward(request, response); - return; - } - } catch (RuntimeException e) { - e.printStackTrace(); - request.setAttribute("error", "value: " + e.toString()); - request.setAttribute("urls", urls); - request.getRequestDispatcher("depositform.jsp").forward(request, response); - } catch (Exception e) { - e.printStackTrace(); - request.setAttribute("error", "value: " + e.toString()); - request.setAttribute("urls", urls); - request.getRequestDispatcher("depositform.jsp").forward(request, response); - } - } -} diff --git a/dspace-sword/src/main/java/org/purl/sword/server/AtomDocumentServlet.java b/dspace-sword/src/main/java/org/purl/sword/server/AtomDocumentServlet.java index 0b2a675efd4e..0c7cb3aab19a 100644 --- a/dspace-sword/src/main/java/org/purl/sword/server/AtomDocumentServlet.java +++ b/dspace-sword/src/main/java/org/purl/sword/server/AtomDocumentServlet.java @@ -9,10 +9,10 @@ import java.io.IOException; import java.io.PrintWriter; -import javax.servlet.ServletException; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; +import jakarta.servlet.ServletException; +import jakarta.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletResponse; import org.purl.sword.base.AtomDocumentRequest; import org.purl.sword.base.AtomDocumentResponse; import org.purl.sword.base.SWORDAuthenticationException; diff --git a/dspace-sword/src/main/java/org/purl/sword/server/DepositServlet.java b/dspace-sword/src/main/java/org/purl/sword/server/DepositServlet.java index d7c01a3f0489..ce63615edae8 100644 --- a/dspace-sword/src/main/java/org/purl/sword/server/DepositServlet.java +++ b/dspace-sword/src/main/java/org/purl/sword/server/DepositServlet.java @@ -19,11 +19,11 @@ import java.util.Date; import java.util.StringTokenizer; import java.util.concurrent.atomic.AtomicInteger; -import javax.servlet.ServletException; -import javax.servlet.http.HttpServlet; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; +import jakarta.servlet.ServletException; +import jakarta.servlet.http.HttpServlet; +import jakarta.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletResponse; import org.apache.commons.codec.binary.Base64; import org.apache.logging.log4j.Logger; import org.purl.sword.atom.Summary; @@ -159,7 +159,7 @@ public void init() throws ServletException { * * @param request the request. * @param response the response. - * @throws javax.servlet.ServletException passed through. + * @throws jakarta.servlet.ServletException passed through. * @throws java.io.IOException passed through. */ @Override @@ -174,7 +174,7 @@ protected void doGet(HttpServletRequest request, HttpServletResponse response) * * @param request the request. * @param response the response. - * @throws javax.servlet.ServletException passed through. + * @throws jakarta.servlet.ServletException passed through. * @throws java.io.IOException passed through. */ @Override diff --git a/dspace-sword/src/main/java/org/purl/sword/server/DummyServer.java b/dspace-sword/src/main/java/org/purl/sword/server/DummyServer.java index 2dc9b3b7e214..96551af2d2ba 100644 --- a/dspace-sword/src/main/java/org/purl/sword/server/DummyServer.java +++ b/dspace-sword/src/main/java/org/purl/sword/server/DummyServer.java @@ -15,8 +15,8 @@ import java.util.TimeZone; import java.util.zip.ZipEntry; import java.util.zip.ZipInputStream; -import javax.servlet.http.HttpServletResponse; +import jakarta.servlet.http.HttpServletResponse; import org.apache.logging.log4j.Logger; import org.purl.sword.atom.Author; import org.purl.sword.atom.Content; diff --git a/dspace-sword/src/main/java/org/purl/sword/server/ServiceDocumentServlet.java b/dspace-sword/src/main/java/org/purl/sword/server/ServiceDocumentServlet.java index 494cbc9db41c..842726a9511a 100644 --- a/dspace-sword/src/main/java/org/purl/sword/server/ServiceDocumentServlet.java +++ b/dspace-sword/src/main/java/org/purl/sword/server/ServiceDocumentServlet.java @@ -10,11 +10,11 @@ import java.io.IOException; import java.io.PrintWriter; import java.util.StringTokenizer; -import javax.servlet.ServletException; -import javax.servlet.http.HttpServlet; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; +import jakarta.servlet.ServletException; +import jakarta.servlet.http.HttpServlet; +import jakarta.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletResponse; import org.apache.commons.codec.binary.Base64; import org.apache.logging.log4j.Logger; import org.purl.sword.base.HttpHeaders; @@ -107,7 +107,7 @@ public void init() throws ServletException { * * @param request the request. * @param response the response. - * @throws javax.servlet.ServletException passed through. + * @throws jakarta.servlet.ServletException passed through. * @throws java.io.IOException passed through. */ @Override @@ -174,7 +174,7 @@ protected void doGet(HttpServletRequest request, * * @param request the request. * @param response the response. - * @throws javax.servlet.ServletException passed through. + * @throws jakarta.servlet.ServletException passed through. * @throws java.io.IOException passed through. */ @Override diff --git a/dspace-swordv2/pom.xml b/dspace-swordv2/pom.xml index 256ee350e6be..0c548e162cdb 100644 --- a/dspace-swordv2/pom.xml +++ b/dspace-swordv2/pom.xml @@ -24,42 +24,40 @@ - javax.servlet - javax.servlet-api + jakarta.servlet + jakarta.servlet-api provided - org.swordapp + io.gdcc sword2-server - 1.0 - jar - classes + 2.0.0 - + - org.apache.abdera - abdera-client + org.codehaus.woodstox + woodstox-core-asl + - javax.servlet - servlet-api + org.glassfish.jersey.core + jersey-common - + - log4j - log4j + org.apache.geronimo.specs + geronimo-activation_1.1_spec - org.slf4j - slf4j-log4j12 + org.apache.geronimo.specs + geronimo-javamail_1.4_spec - - com.hp.hpl.jena - jena + org.apache.geronimo.specs + geronimo-stax-api_1.0_spec @@ -102,29 +100,6 @@ org.apache.logging.log4j log4j-web - - - - org.apache.ws.commons.axiom - fom-impl - - 1.2.22 - - - - org.apache.geronimo.specs - * - - - - org.codehaus.woodstox - woodstox-core-asl - - - diff --git a/dspace-swordv2/src/main/java/org/dspace/sword2/ContainerManagerDSpace.java b/dspace-swordv2/src/main/java/org/dspace/sword2/ContainerManagerDSpace.java index 454afd80dc1c..c0e8ef6bdc46 100644 --- a/dspace-swordv2/src/main/java/org/dspace/sword2/ContainerManagerDSpace.java +++ b/dspace-swordv2/src/main/java/org/dspace/sword2/ContainerManagerDSpace.java @@ -755,7 +755,7 @@ protected void doContainerDelete(SwordContext swordContext, Item item, WorkflowTools wft = new WorkflowTools(); if (wft.isItemInWorkspace(swordContext.getContext(), item)) { WorkspaceItem wsi = wft.getWorkspaceItem(context, item); - workspaceItemService.deleteAll(context, wsi); + workspaceItemService.deleteWrapper(context, wsi); } else if (wft.isItemInWorkflow(context, item)) { WorkflowItem wfi = wft.getWorkflowItem(context, item); workflowItemService.deleteWrapper(context, wfi); diff --git a/dspace-swordv2/src/main/java/org/dspace/sword2/GenericStatementDisseminator.java b/dspace-swordv2/src/main/java/org/dspace/sword2/GenericStatementDisseminator.java index f06deb61fd85..98bd2095726b 100644 --- a/dspace-swordv2/src/main/java/org/dspace/sword2/GenericStatementDisseminator.java +++ b/dspace-swordv2/src/main/java/org/dspace/sword2/GenericStatementDisseminator.java @@ -17,7 +17,11 @@ import org.apache.commons.lang3.ArrayUtils; import org.dspace.content.Bitstream; import org.dspace.content.Bundle; +import org.dspace.content.DCDate; import org.dspace.content.Item; +import org.dspace.content.MetadataValue; +import org.dspace.content.factory.ContentServiceFactory; +import org.dspace.content.service.ItemService; import org.dspace.core.Context; import org.dspace.services.factory.DSpaceServicesFactory; import org.swordapp.server.OriginalDeposit; @@ -28,6 +32,9 @@ public abstract class GenericStatementDisseminator implements SwordStatementDisseminator { protected SwordUrlManager urlManager; + protected ItemService itemService = ContentServiceFactory.getInstance() + .getItemService(); + protected void populateStatement(Context context, Item item, Statement statement) throws DSpaceSwordException { @@ -78,6 +85,7 @@ protected List getOriginalDeposits(Context context, bitstream)); deposit.setMediaType(bitstream .getFormat(context).getMIMEType()); + deposit.setDepositedOn(this.getDateOfDeposit(item)); originalDeposits.add(deposit); } } @@ -173,4 +181,14 @@ private String getOriginalDepositsBundle() { } return swordBundle; } + + private Date getDateOfDeposit(Item item) { + List values = itemService.getMetadata(item, "dc", "date", "accessioned", Item.ANY); + Date date = new Date(); + if (values != null && values.size() > 0) { + String strDate = values.get(0).getValue(); + date = new DCDate(strDate).toDate(); + } + return date; + } } diff --git a/dspace-swordv2/src/main/java/org/dspace/sword2/ReceiptGenerator.java b/dspace-swordv2/src/main/java/org/dspace/sword2/ReceiptGenerator.java index b4526985145a..725ae5e73492 100644 --- a/dspace-swordv2/src/main/java/org/dspace/sword2/ReceiptGenerator.java +++ b/dspace-swordv2/src/main/java/org/dspace/sword2/ReceiptGenerator.java @@ -8,8 +8,6 @@ package org.dspace.sword2; import java.sql.SQLException; -import java.text.ParseException; -import java.text.SimpleDateFormat; import java.util.Date; import java.util.HashMap; import java.util.List; @@ -28,6 +26,7 @@ import org.dspace.core.Context; import org.dspace.services.ConfigurationService; import org.dspace.services.factory.DSpaceServicesFactory; +import org.dspace.util.MultiFormatDateParser; import org.swordapp.server.DepositReceipt; import org.swordapp.server.SwordError; import org.swordapp.server.SwordServerException; @@ -284,14 +283,8 @@ protected void addPublishDate(DepositResult result, DepositReceipt receipt) { List dcv = itemService.getMetadataByMetadataString( result.getItem(), "dc.date.issued"); if (dcv != null && !dcv.isEmpty()) { - try { - SimpleDateFormat sdf = new SimpleDateFormat("yyyy-MM-dd"); - Date published = sdf.parse(dcv.get(0).getValue()); - receipt.getWrappedEntry().setPublished(published); - } catch (ParseException e) { - // we tried, but never mind - log.warn("Couldn't add published date", e); - } + Date published = MultiFormatDateParser.parse(dcv.get(0).getValue()); + receipt.getWrappedEntry().setPublished(published); } } @@ -305,14 +298,8 @@ protected void addPublishDate(Item item, DepositReceipt receipt) { List dcv = itemService.getMetadataByMetadataString( item, "dc.date.issued"); if (dcv != null && dcv.size() == 1) { - try { - SimpleDateFormat sdf = new SimpleDateFormat("yyyy-MM-dd"); - Date published = sdf.parse(dcv.get(0).getValue()); - receipt.getWrappedEntry().setPublished(published); - } catch (ParseException e) { - // we tried, but never mind - log.warn("Couldn't add published date", e); - } + Date published = MultiFormatDateParser.parse(dcv.get(0).getValue()); + receipt.getWrappedEntry().setPublished(published); } } @@ -329,14 +316,8 @@ protected void addLastUpdatedDate(DepositResult result, List dcv = itemService.getMetadataByMetadataString( result.getItem(), config); if (dcv != null && dcv.size() == 1) { - try { - SimpleDateFormat sdf = new SimpleDateFormat("yyyy-MM-dd"); - Date updated = sdf.parse(dcv.get(0).getValue()); - receipt.getWrappedEntry().setUpdated(updated); - } catch (ParseException e) { - // we tried, but never mind - log.warn("Couldn't add last updated date", e); - } + Date updated = MultiFormatDateParser.parse(dcv.get(0).getValue()); + receipt.getWrappedEntry().setUpdated(updated); } } @@ -352,14 +333,8 @@ protected void addLastUpdatedDate(Item item, DepositReceipt receipt) { List dcv = itemService.getMetadataByMetadataString( item, config); if (dcv != null && dcv.size() == 1) { - try { - SimpleDateFormat sdf = new SimpleDateFormat("yyyy-MM-dd"); - Date updated = sdf.parse(dcv.get(0).getValue()); - receipt.getWrappedEntry().setUpdated(updated); - } catch (ParseException e) { - // we tried, but never mind - log.warn("Couldn't add last updated date", e); - } + Date updated = MultiFormatDateParser.parse(dcv.get(0).getValue()); + receipt.getWrappedEntry().setUpdated(updated); } } } diff --git a/dspace/config/dspace.cfg b/dspace/config/dspace.cfg index 89c351b7539e..dcb0e908698c 100644 --- a/dspace/config/dspace.cfg +++ b/dspace/config/dspace.cfg @@ -807,8 +807,8 @@ event.dispatcher.RelatedItemEnhancerUpdatePoller.class = org.dspace.event.BasicD # Add rdf here, if you are using dspace-rdf to export your repository content as RDF. # Add iiif here, if you are using dspace-iiif. # Add orcidqueue here, if the integration with ORCID is configured and wish to enable the synchronization queue functionality -event.dispatcher.default.consumers = versioning, discovery, eperson, dedup, crisconsumer, orcidqueue, audit, qaeventsdelete, referenceresolver, orcidwebhook, itemenhancer, customurl, iiif, reciprocal, filetypemetadataenhancer, authoritylink -event.dispatcher.RelatedItemEnhancerUpdatePoller.consumers = versioning, discovery, eperson, dedup, crisconsumer, orcidqueue, audit, qaeventsdelete, referenceresolver, orcidwebhook, itemenhancer, customurl, iiif, reciprocal, filetypemetadataenhancer, authoritylink +event.dispatcher.default.consumers = versioning, discovery, eperson, dedup, crisconsumer, orcidqueue, audit, qaeventsdelete, referenceresolver, orcidwebhook, itemenhancer, customurl, iiif, reciprocal, filetypemetadataenhancer, authoritylink, ldnmessage +event.dispatcher.RelatedItemEnhancerUpdatePoller.consumers = versioning, discovery, eperson, dedup, crisconsumer, orcidqueue, audit, qaeventsdelete, referenceresolver, orcidwebhook, itemenhancer, customurl, iiif, reciprocal, filetypemetadataenhancer, authoritylink, ldnmessage # enable the item enhancer poller related-item-enhancer-poller.enabled = true @@ -894,6 +894,11 @@ event.consumer.ldnmessage.class = org.dspace.app.ldn.LDNMessageConsumer event.consumer.ldnmessage.filters = Item+Install # item submission config reload consumer +# This consumer can be useful for reloading changes made in the item-submission.xml config file, +# without restarting Tomcat, primarily for adding new collection mappings. +# With this consumer, configuration reloading is triggered after a collection is updated. +# It is disabled by default. To enable it, add 'submissionconfig' to the list of +# activated consumers (event.dispatcher.default.consumers). event.consumer.submissionconfig.class = org.dspace.submit.consumer.SubmissionConfigConsumer event.consumer.submissionconfig.filters = Collection+Modify_Metadata @@ -1075,6 +1080,11 @@ webui.licence_bundle.show = false metadata.hide.dc.description.provenance = true metadata.hide.person.email = true +# Behavior to generate provenance message, if set true, +# personal data (e.g. email) of submitter will be hidden in dc.description.provenance +# Disabled by default. To enable, uncomment the next line +# metadata.privacy.dc.description.provenance = true + ##### Settings for Submission Process ##### #Default relationship type in submission @@ -1124,7 +1134,7 @@ cc.license.classfilter = recombo, mark, publicdomain # Jurisdiction of the creative commons license -- is it ported or not? # Use the key from the url seen in the response from the api call, -# http://api.creativecommons.org/rest/1.5/support/jurisdictions +# https://api.creativecommons.org/rest/1.5/support/jurisdictions # Commented out means the license is unported. # (e.g. nz = New Zealand, uk = England and Wales, jp = Japan) # or set value none for user-selected jurisdiction @@ -1194,15 +1204,6 @@ webui.preview.brand.fontpoint = 12 # webui.strengths.cache = true -###### ItemCounter Configuration ###### -# -# Define the DAO class to use. This must correspond to your choice of -# storage for the browse system (Solr is only option at this time). -# By default, the Solr implementation is used. -# -# Solr: -# ItemCountDAO.class = org.dspace.browse.ItemCountDAOSolr - ###### Browse Configuration ###### # # Define the DAO class to use this must meet your storage choice for @@ -1444,8 +1445,6 @@ plugin.named.org.dspace.content.license.LicenseArgumentFormatter = \ org.dspace.content.license.SimpleDSpaceObjectLicenseFormatter = eperson #### Syndication Feed (RSS) Settings ###### -# TODO: UNSUPPORTED in DSpace 7.0. Will be added in a later release - # URLs returned by the feed will point at the global handle server # (e.g. https://hdl.handle.net/123456789/1). Set to true to use local server # URLs (i.e. https://myserver.myorg/handle/123456789/1) @@ -1550,9 +1549,14 @@ webui.content_disposition_threshold = 8388608 #### Content Attachment Disposition Formats #### # -# Set which mimetypes, file extensions will NOT be opened inline -# Files with these mimetypes/extensions will always be downloaded, -# regardless of the threshold above +# Set which mimetypes or file extensions will NOT be opened inline. +# Files with these mimetypes/extensions will always be downloaded, regardless of the threshold above. +# NOTE: For security reasons, some file formats (e.g. HTML, XML, RDF, JS) will always be downloaded regardless +# of the settings here. This blocks these formats from executing embedded JavaScript when opened inline. +# For additional security, you may choose to set this to "*" to force all formats to always be downloaded +# (i.e. disables all formats from opening inline within the user's browser). +# +# By default, RTF is always downloaded because most browsers attempt to display it as plain text. webui.content_disposition_format = text/richtext #### Multi-file HTML document/site settings ##### diff --git a/dspace/config/emails/batch_import_error b/dspace/config/emails/batch_import_error new file mode 100644 index 000000000000..2c62d72bf9c9 --- /dev/null +++ b/dspace/config/emails/batch_import_error @@ -0,0 +1,19 @@ +## Email sent to DSpace users when their batch import fails. +## +## Parameters: {0} the export error +## {1} the URL to the feedback page +## +## +## See org.dspace.core.Email for information on the format of this file. +## +#set($subject = 'DSpace - The batch import was not completed.') +The batch import you initiated from the DSpace UI was not completed, due to the following reason: + ${params[0]} + +For more information you may contact your system administrator: + ${params[1]} + + + +The DSpace Team + diff --git a/dspace/config/emails/batch_import_success b/dspace/config/emails/batch_import_success new file mode 100644 index 000000000000..7e9fdbf7416a --- /dev/null +++ b/dspace/config/emails/batch_import_success @@ -0,0 +1,16 @@ + +## Email sent to DSpace users when they successfully batch import items. +## +## Parameters: {0} the filepath to the mapfile created by the batch import +## +## +## See org.dspace.core.Email for information on the format of this file. +## +#set($subject = 'DSpace - Batch import successfully completed') +The batch item import you initiated from the DSpace UI has completed successfully. + +You may find the mapfile for the import in the following path: ${params[0]} + + +The DSpace Team + diff --git a/dspace/config/hibernate.cfg.xml b/dspace/config/hibernate.cfg.xml index 648e6f855691..ada729a51d19 100644 --- a/dspace/config/hibernate.cfg.xml +++ b/dspace/config/hibernate.cfg.xml @@ -31,7 +31,7 @@ - ENABLE_SELECTIVE + ENABLE_SELECTIVE diff --git a/dspace/config/ldn/announce-relationship b/dspace/config/ldn/announce-relationship new file mode 100644 index 000000000000..205a61adb46c --- /dev/null +++ b/dspace/config/ldn/announce-relationship @@ -0,0 +1,62 @@ +## generate LDN message json when request-review of an item +## +## Parameters: {0} config 'dspace.ui.url' +## {1} config 'ldn.notify.inbox' +## {2} config 'dspace.name' +## {3} Notify Service url +## {4} Notify Service ldnUrl +## {5} 'dspace.ui.url'/handle/xxxx/yyy +## {6} metadata value of 'dc.identifier.uri' +## {7} the url to the primary bitstream or the first bitstream in the ORIGINAL bundle if there is no primary bitstream. The url is 'dspace.ui.url'/bitstreams/:uuid/download +## {8} the bitstream MimeType or get User Format MimeType if getFormat is 'Unknown' +## {9} id of the created LDNMessage +## {10} uri of the related resource +## {11} relationship type, i.e. http://purl.org/vocab/frbr/core#supplement +## {12} urn:uuid of the relation (randomly generated) + +{ + "@context": [ + "https://www.w3.org/ns/activitystreams", + "https://purl.org/coar/notify" + ], + "actor": { + "id": "${params[0]}", + "name": "${params[2]}", + "type": "Service" + }, + "context": { + "id": "${params[5]}", + "ietf:cite-as": "${params[6]}", + "ietf:item": { + "id": "${params[7]}", + "mediaType": "${params[8]}", + "type": [ + "Article", + "sorg:ScholarlyArticle" + ] + }, + "type": "sorg:AboutPage" + }, + "id": "${params[9]}", + "object": { + "as:object": "${params[10]}", + "as:relationship": "${params[11]}", + "as:subject": "${params[5]}", + "id": "${params[12]}", + "type": "Relationship" + }, + "origin": { + "id": "${params[0]}", + "inbox": "${params[1]}", + "type": "Service" + }, + "target": { + "id": "${params[3]}", + "inbox": "${params[4]}", + "type": "Service" + }, + "type": [ + "Announce", + "coar-notify:RelationshipAction" + ] +} \ No newline at end of file diff --git a/dspace/config/ldn/request-endorsement b/dspace/config/ldn/request-endorsement index e885bf88efab..443a7029159f 100644 --- a/dspace/config/ldn/request-endorsement +++ b/dspace/config/ldn/request-endorsement @@ -26,7 +26,7 @@ "id": "${params[5]}", "ietf:cite-as": "${params[6]}", "type": "sorg:AboutPage", - "url": { + "ietf:item": { "id": "${params[7]}", "mediaType": "${params[8]}", "type": [ diff --git a/dspace/config/ldn/request-ingest b/dspace/config/ldn/request-ingest index 82bd9a85d90c..701f3929c826 100644 --- a/dspace/config/ldn/request-ingest +++ b/dspace/config/ldn/request-ingest @@ -26,7 +26,7 @@ "id": "${params[5]}", "ietf:cite-as": "${params[6]}", "type": "sorg:AboutPage", - "url": { + "ietf:item": { "id": "${params[7]}", "mediaType": "${params[8]}", "type": [ diff --git a/dspace/config/ldn/request-review b/dspace/config/ldn/request-review index 24c1ac831968..01f177b6cc18 100644 --- a/dspace/config/ldn/request-review +++ b/dspace/config/ldn/request-review @@ -26,7 +26,7 @@ "id": "${params[5]}", "ietf:cite-as": "${params[6]}", "type": "sorg:AboutPage", - "url": { + "ietf:item": { "id": "${params[7]}", "mediaType": "${params[8]}", "type": [ diff --git a/dspace/config/modules/identifiers.cfg b/dspace/config/modules/identifiers.cfg index 2660646af394..aff37c89c56b 100644 --- a/dspace/config/modules/identifiers.cfg +++ b/dspace/config/modules/identifiers.cfg @@ -15,17 +15,12 @@ # Default: false #identifiers.submission.register = true -# This configuration property can be set to a filter name to determine if a PENDING DOI for an item -# should be queued for registration. If the filter doesn't match, the DOI will stay in PENDING or MINTED status -# so that the identifier itself persists in case it is considered for registration in the future. -# See doi-filter and other example filters in item-filters.xml. -# Default (always_true_filter) -#identifiers.submission.filter.install = doi-filter - # This optional configuration property can be set to a filter name, in case there are some initial rules to apply # when first deciding whether a DOI should be be created for a new workspace item with a PENDING status. # This filter is only applied if identifiers.submission.register is true. # This filter is updated as submission data is saved. +# If you're looking for the filter that decides whether a DOI of an installed item should be queued for registration +# at DataCite, please check the filter in the identifier service spring configuration. # Default: (always_true_filter) #identifiers.submission.filter.workspace = always_true_filter diff --git a/dspace/config/modules/ldn.cfg b/dspace/config/modules/ldn.cfg index 88cfcdd59c83..57f1c878ed35 100644 --- a/dspace/config/modules/ldn.cfg +++ b/dspace/config/modules/ldn.cfg @@ -16,14 +16,6 @@ ldn.enabled = false #LDN message inbox endpoint ldn.notify.inbox = ${dspace.server.url}/ldn/inbox -# List the external services IDs for review/endorsement -# These IDs needs to be configured in the input-form.xml as well -# These IDs must contain only the hostname and the resource path -# Do not include any protocol -# Each IDs must match with the ID returned by the external service -# in the JSON-LD Actor field -#service.service-id.ldn = - # LDN Queue extractor elaborates LDN Message entities of the queue ldn.queue.extractor.cron = 0 0/5 * * * ? @@ -45,6 +37,9 @@ ldn.notify.inbox.block-untrusted = true # and out-of-range IP ldn.notify.inbox.block-untrusted-ip = true +# this is the medatada used to retrieve the relation with external items when sending relationship requests +#ldn.notify.relation.metadata = dc.relation + # EMAIL CONFIGURATION diff --git a/dspace/config/modules/openaire-client.cfg b/dspace/config/modules/openaire-client.cfg index 26d36fa816f5..09659299f26d 100644 --- a/dspace/config/modules/openaire-client.cfg +++ b/dspace/config/modules/openaire-client.cfg @@ -34,4 +34,6 @@ openaire.token.clientSecret = CLIENT_SECRET_HERE # URL of Openaire Rest API openaire.api.url = https://api.openaire.eu -openaire.base.url = http://api.openaire.eu/search/publications \ No newline at end of file +# OpenAIRE Search API to use for metadata import via external sources +# (e.g. importing metadata from OpenAIRE via submission) +openaire.search.url = https://api.openaire.eu/search/publications \ No newline at end of file diff --git a/dspace/config/modules/orcid.cfg b/dspace/config/modules/orcid.cfg index 6aaa0d85850a..665ae3f82102 100644 --- a/dspace/config/modules/orcid.cfg +++ b/dspace/config/modules/orcid.cfg @@ -20,6 +20,9 @@ orcid.authority.prefix = will be referenced::ORCID:: orcid.linkable-metadata-fields.ignore = +# Configuration if the orcid sync settings should be remain on he profile when it is disconnected from orcid or not +orcid.disconnection.remain-sync = true + #------------------------------------------------------------------# #--------------------ORCID CLIENT CONFIGURATIONS-------------------# #------------------------------------------------------------------# diff --git a/dspace/config/modules/rdf/fuseki-assembler.ttl b/dspace/config/modules/rdf/fuseki-assembler.ttl index 0b6340351cb5..7f577aebc108 100644 --- a/dspace/config/modules/rdf/fuseki-assembler.ttl +++ b/dspace/config/modules/rdf/fuseki-assembler.ttl @@ -29,7 +29,7 @@ ### Assembler initialization ### ################################ # Declaration additional assembler items. -[] ja:loadClass "com.hp.hpl.jena.tdb.TDB" . +[] ja:loadClass "org.apache.jena.tdb.TDB" . # TDB tdb:DatasetTDB rdfs:subClassOf ja:RDFDataset . diff --git a/dspace/config/modules/rest.cfg b/dspace/config/modules/rest.cfg index b79dff42ed1d..fadebecbb64f 100644 --- a/dspace/config/modules/rest.cfg +++ b/dspace/config/modules/rest.cfg @@ -100,154 +100,11 @@ rest.properties.exposed = ldn.notify.inbox rest.properties.exposed = contentreport.enable rest.properties.exposed = duplicate.enable +# Patterns associated with uri for which do not set the context in read-only mode for GET calls +rest.get-in-read-only-mode.exception-patterns = /api/authn/** +rest.get-in-read-only-mode.exception-patterns = /api/cris/orcid/** + #------------------------------------------------------------------# #------------DEDUPLICATION / DATAQUALITY CONFIGURATIONS------------# #------------------------------------------------------------------# rest.properties.exposed = merge.excluded-metadata - -#---------------------------------------------------------------# -# These configs are used by the deprecated REST (v4-6) module # -#---------------------------------------------------------------# -# record stats in DSpace statistics module -rest.stats = true - -#------------------------------------------------------------------# -# REST API Reporting Tools # -#------------------------------------------------------------------# -# TODO: Currently only supported by deprecated REST (v4-6) module -# This project is intended as an optional add-on to DSpace to provide -# Quality Control Reporting for Collection Managers. -# -# See https://github.com/DSpace-Labs/DSpace-REST-Reports -# -# These reports utilize the DSpace REST API to provide a Collection -# Manager with -# - an overview of their collections -# - a tool to query metadata for consistency -# -# When deploying the DSpace REST API, and institution may choose to -# make the API publicly accessible or to restrict access to the API. -# If these reports are deployed in a protected manner, the reporting -# tools can be configured to bypass DSpace authorization when -# reporting on collections and items. - -##### Configure the report pages that can be requested by name ##### -# Create a map of named reports that are available to a report tool user -# Each map entry should be prefixed with rest-report-url -# The map key is a name for a report -# The map value is a URL to a report page -# A list of available reports will be available with the call /rest/reports. -# If a request is sent to /rest/reports/[report key], the request will be re-directed to the specified URL -# -# This project currently contains 2 sample reports. Eventually, additional reports could be introduced through this mechanism. -rest.report-url.collections = static/reports/index.html -rest.report-url.item-query = static/reports/query.html -#rest.report-url.custom = - -##### database specific way to format a regex SQL clause ##### -# The REST Report Tools may pass a regular expression test to the database. -# The following configuration setting will construct a SQL regular expression test appropriate to your database engine -rest.regex-clause = text_value ~ ? - -##### Customize the REST origins allowed to retrieve the bitstreams ##### -##### default is set to pattern * - use this configuration to restrict/modify this behavior -##### This configuration doens't support the wildcard -rest.cors.bitstream-allowed-origins = - -##### Configure REST Report Filters ##### -# A filter contains a set of tests that will be applied to an item to determine its inclusion in a particular report. -# Private items and withdrawn items are frequently excluded from DSpace reports. -# Additional filters can be configured to examine other item properties. -# For instance, items containing an image bitstream often have different requirements from a item containing a PDF. -# The DSpace REST reports come with a variety of filters that examine item properties, item bitstream properties, -# and item authorization policies. The existing filters can be used as an example to construct institution specific filters -# that will test conformity to a set of institutional policies. -# plugin.sequence.org.dspace.rest.filter points to a list of classes that contain available filters. -# Each class must implement the ItemFilterList interface. -# ItemFilterDefs: Filters that examine simple item and bitstream type properties -# ItemFilterDefsMisc: Filters that examine bitstream mime types and dependencies between bitstreams -# ItemFilterDefsMeta: Filters that examine metadata properties -# ItemFilterDefsPerm: Filters that examine item and bitstream authorization policies -plugin.sequence.org.dspace.rest.filter.ItemFilterList = \ - org.dspace.rest.filter.ItemFilterDefs,\ - org.dspace.rest.filter.ItemFilterDefsMisc,\ - org.dspace.rest.filter.ItemFilterDefsPerm - -# org.dspace.rest.filter.ItemFilterDefsMeta,\ - -##### Configuration Settings used by REST Report Filters ##### - -# Define the set of supported bitstream bundle names for your repository as a comma separated list -rest.report-supp-bundles = ORIGINAL,THUMBNAIL,TEXT,LICENSE - -# Define the bitstream mime types that will be interpreted as a "document". -# Generally, a "document" should be expected to be searchable and to have a TEXT bitstream. An institution may expect document types to -# have a thumbnail. -rest.report-mime-document = text/plain,application/pdf,text/html,application/msword,text/xml,application/vnd.openxmlformats-officedocument.wordprocessingml.document,application/vnd.ms-powerpoint,application/vnd.openxmlformats-officedocument.presentationml.presentation,application/vnd.ms-excel,application/vnd.openxmlformats-officedocument.spreadsheetml.sheet - -# Define the standard/preferred bitstream mime types for document items for your repository -# This setting allows the reporting tools to report on "supported" and "unsupported" document types. -rest.report-mime-document-supported = application/pdf - -# Define the standard/preferred bitstream mime types for image items for your repository -# This setting allows the reporting tools to report on "supported" and "unsupported" image types. -rest.report-mime-document-image = image/jpeg,image/jp2 - -# Minimum size for a supported PDF in the repository -# PDF bitstreams smaller than this size will be highlighted in a report. -# PDF files smaller than this size are potentially corrupt. -rest.report-pdf-min-size = 20000 - -# Maximum size for a typical PDF in the repository -# PDF bitstreams larger than this size will be highlighted in a report. -# PDF files larger than this size may be slow to retrieve. -rest.report-pdf-max-size = 25000000 - -# Minimum size for a thumbnail - could indicate a corrupted original -# Thumbnail bitstreams smaller than this size will be highlighted in a report. -# Thumbnail files smaller than this size are potentially corrupt. -rest.report-thumbnail-min-size = 400 - -# Bitstream descriptor to identify generated thumbnails -# The ImageMagick Thumbnail generator tags the thumbnails it has created with a standard description. -# This description identifies thumbnails that can safely be re-generated. -rest.report-gen-thumbnail-desc = Generated Thumbnail - -#### Metadata Filtering by Regular Expression ##### -# Used by org.dspace.rest.filter.ItemFilterDefsMeta -# This class filters items based on metadata properties. -# These filters are useful for filtering a small set of items. These filters will be inefficient as a query tool. - -# regex to detect compound subjects - detect subject terms that should be split into individual terms -rest.report-regex-compound-subject = .*;.* - -# regex to detect compound authors - detect author/creator names taht should be split into individual fields -rest.report-regex-compound-author = .* and .* - -# regex to detect unbreaking metadata - detect long unbreaking text that may not render properly on a page -# Be sure to escape commas to prevent Apache Config from breaking regex into array values -rest.report-regex-unbreaking = ^.*[^ ]{50\,50}.*$ - -# regex to detect url in description - detect description fields that contain URL's -rest.report-regex-url = ^.*(http://|https://|mailto:).*$ - -# regex to identify full text content from the provenance field -# This test has been used to identfiy "full-text" content when harvesting DSpace content by Summon -rest.report-regex-fulltext = ^.*No\\. of bitstreams(.|\\r|\\n|\\r\\n)*\\.(PDF|pdf|DOC|doc|PPT|ppt|DOCX|docx|PPTX|pptx).*$ - -# regex to identify very long metadata fields that may be slow to render -# Be sure to escape commas to prevent Apache Config from breaking regex into array values -rest.report-regex-long = ^[\\s\\S]{6000\,}$ - -# regex to identify partial XML entities within a description field (a frequent problem found in ProQuest ETD's) -rest.report-regex-xml-entity = ^.*&#.*$ - -# regex to identify non ascii characters in metadata -rest.report-regex-non-ascii = ^.*[^\\p{ASCII}].*$ - -# The maximum number of results to return for 1 request -rest.search.max.results = 100 - -# Patterns associated with uri for which do not set the context in read-only mode for GET calls -rest.get-in-read-only-mode.exception-patterns = /api/authn/** -rest.get-in-read-only-mode.exception-patterns = /api/cris/orcid/** diff --git a/dspace/config/modules/solr-statistics.cfg b/dspace/config/modules/solr-statistics.cfg index 073850ca232e..28273809de70 100644 --- a/dspace/config/modules/solr-statistics.cfg +++ b/dspace/config/modules/solr-statistics.cfg @@ -19,10 +19,6 @@ solr-statistics.query.filter.bundles=ORIGINAL # create new Solr cores when sharding the statistics data. solr-statistics.configset = statistics -# control solr statistics querying to filter out spider IPs -# false by default -#solr-statistics.query.filter.spiderIp = false - # control solr statistics querying to look at "isBot" field to determine # if record is a bot. true by default. #solr-statistics.query.filter.isBot = true diff --git a/dspace/config/registries/bitstream-formats.xml b/dspace/config/registries/bitstream-formats.xml index 3515773fd742..fe0943e015e0 100644 --- a/dspace/config/registries/bitstream-formats.xml +++ b/dspace/config/registries/bitstream-formats.xml @@ -827,4 +827,13 @@ avif + + text/javascript + JavaScript + JavaScript + 1 + false + js + + diff --git a/dspace/config/spring/api/core-hibernate.xml b/dspace/config/spring/api/core-hibernate.xml index 45f7d15dc51d..6c54fca46e9d 100644 --- a/dspace/config/spring/api/core-hibernate.xml +++ b/dspace/config/spring/api/core-hibernate.xml @@ -4,7 +4,7 @@ xsi:schemaLocation="http://www.springframework.org/schema/beans http://www.springframework.org/schema/beans/spring-beans.xsd" default-lazy-init="true"> - + diff --git a/dspace/config/spring/api/core-services.xml b/dspace/config/spring/api/core-services.xml index ee1eee72396c..425ce7ae4a93 100644 --- a/dspace/config/spring/api/core-services.xml +++ b/dspace/config/spring/api/core-services.xml @@ -31,6 +31,9 @@ + + + diff --git a/dspace/config/spring/api/crossref-integration.xml b/dspace/config/spring/api/crossref-integration.xml index f1363fae322e..2c481e0f01f2 100644 --- a/dspace/config/spring/api/crossref-integration.xml +++ b/dspace/config/spring/api/crossref-integration.xml @@ -132,8 +132,11 @@ - + + + + diff --git a/dspace/config/spring/api/discovery.xml b/dspace/config/spring/api/discovery.xml index c3c845a06d7e..4611c14cdcfc 100644 --- a/dspace/config/spring/api/discovery.xml +++ b/dspace/config/spring/api/discovery.xml @@ -3865,7 +3865,7 @@ - notify.relation.endorsedBy + coar.notify.endorsedBy @@ -3972,18 +3972,18 @@ - + - + - + diff --git a/dspace/config/spring/api/external-services.xml b/dspace/config/spring/api/external-services.xml index 16ab1fe407a1..93601732f091 100644 --- a/dspace/config/spring/api/external-services.xml +++ b/dspace/config/spring/api/external-services.xml @@ -194,7 +194,6 @@ Publication - none @@ -206,7 +205,6 @@ Publication - none diff --git a/dspace/config/spring/api/identifier-service.xml b/dspace/config/spring/api/identifier-service.xml index 7671178d954c..d5a55ca34379 100644 --- a/dspace/config/spring/api/identifier-service.xml +++ b/dspace/config/spring/api/identifier-service.xml @@ -52,13 +52,12 @@ --> - + + on the filters defined in item-filters.xml, eg. + Of course, you can use a filter on the VersionedDOIIdentifierProvider as well. + --> - diff --git a/dspace/config/spring/api/ldn-coar-notify.xml b/dspace/config/spring/api/ldn-coar-notify.xml index fcda57a10d77..2329925a5413 100644 --- a/dspace/config/spring/api/ldn-coar-notify.xml +++ b/dspace/config/spring/api/ldn-coar-notify.xml @@ -164,6 +164,15 @@ + + + + Announce + coar-notify:RelationshipAction + + + + @@ -273,6 +282,14 @@ + + + + + + + + diff --git a/dspace/config/spring/api/orcid-services.xml b/dspace/config/spring/api/orcid-services.xml index 7c983029e71e..a88a1ae6c8d6 100644 --- a/dspace/config/spring/api/orcid-services.xml +++ b/dspace/config/spring/api/orcid-services.xml @@ -40,7 +40,6 @@ - @@ -57,6 +56,7 @@ + diff --git a/dspace/config/spring/api/solr-services.xml b/dspace/config/spring/api/solr-services.xml index 52549d96d906..208ab940ee4d 100644 --- a/dspace/config/spring/api/solr-services.xml +++ b/dspace/config/spring/api/solr-services.xml @@ -12,9 +12,9 @@ xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:context="http://www.springframework.org/schema/context" xsi:schemaLocation="http://www.springframework.org/schema/beans - http://www.springframework.org/schema/beans/spring-beans-2.5.xsd + http://www.springframework.org/schema/beans/spring-beans.xsd http://www.springframework.org/schema/context - http://www.springframework.org/schema/context/spring-context-2.5.xsd" + http://www.springframework.org/schema/context/spring-context.xsd" default-autowire-candidates="*Service,*DAO,javax.sql.DataSource"> @@ -25,19 +25,30 @@ - - - - - - + + Store and access DSpace usage statistics records in Solr. + + + + + Store and access DSpace usage statistics records in Solr. + + + + + HTTP connection to a Solr instance. + - diff --git a/dspace/config/spring/api/virtual-metadata.xml b/dspace/config/spring/api/virtual-metadata.xml index efab52c1b7c3..dee96eca7c0c 100644 --- a/dspace/config/spring/api/virtual-metadata.xml +++ b/dspace/config/spring/api/virtual-metadata.xml @@ -77,7 +77,7 @@ - + + + org.antlr + antlr4-runtime + + org.apache.lucene diff --git a/dspace/modules/server/pom.xml b/dspace/modules/server/pom.xml index 8e51bc1585dd..d8eb720d0eda 100644 --- a/dspace/modules/server/pom.xml +++ b/dspace/modules/server/pom.xml @@ -351,6 +351,13 @@ solr-core ${solr.client.version} test + + + + org.antlr + antlr4-runtime + + org.apache.lucene diff --git a/dspace/pom.xml b/dspace/pom.xml index 15771033ac31..a477b3128bf4 100644 --- a/dspace/pom.xml +++ b/dspace/pom.xml @@ -254,8 +254,8 @@ - javax.servlet - javax.servlet-api + jakarta.servlet + jakarta.servlet-api diff --git a/dspace/solr/search/conf/schema.xml b/dspace/solr/search/conf/schema.xml index 1a987843d79c..e32c496e0c6a 100644 --- a/dspace/solr/search/conf/schema.xml +++ b/dspace/solr/search/conf/schema.xml @@ -163,6 +163,7 @@ + diff --git a/dspace/src/main/assembly/assembly.xml b/dspace/src/main/assembly/assembly.xml index 97cfac8ed35a..420eb4631429 100644 --- a/dspace/src/main/assembly/assembly.xml +++ b/dspace/src/main/assembly/assembly.xml @@ -62,10 +62,6 @@ bin bin - - etc - etc - solr solr @@ -95,7 +91,7 @@ org.dspace.modules:*:jar:* - + true lib false @@ -110,6 +106,21 @@ + + + + org.dspace:server-boot + + + false + webapps + false + ${artifact.artifactId}.${artifact.extension} + + + + + + + + + + + + + + + + + + + + /dev/null 2>&1; do sleep 1; done; - /dspace/bin/dspace database migrate - sed -i '/name-map collection-handle="default".*/a \\n \ - \ - \ - \ - \ - \ - \ - \ - \ - \ - \ - ' /dspace/config/item-submission.xml - catalina.sh run + /dspace/bin/dspace database migrate ignored + java -jar /dspace/webapps/server-boot.jar --dspace.dir=/dspace diff --git a/dspace/src/main/docker-compose/db.restore.yml b/dspace/src/main/docker-compose/db.restore.yml index 5646370a91ef..ffeca1e59841 100644 --- a/dspace/src/main/docker-compose/db.restore.yml +++ b/dspace/src/main/docker-compose/db.restore.yml @@ -6,8 +6,6 @@ # http://www.dspace.org/license/ # -version: "3.7" - # # Overrides the default "dspacedb" container behavior to load a local SQL file into PostgreSQL. # diff --git a/dspace/src/main/docker-compose/docker-compose-angular.yml b/dspace/src/main/docker-compose/docker-compose-angular.yml index d9a313e32e3e..dc837c5c99b9 100644 --- a/dspace/src/main/docker-compose/docker-compose-angular.yml +++ b/dspace/src/main/docker-compose/docker-compose-angular.yml @@ -6,7 +6,6 @@ # http://www.dspace.org/license/ # -version: '3.7' networks: # Default to using network named 'dspacenet' from docker-compose.yml. # Its full name will be prepended with the project name (e.g. "-p d7" means it will be named "d7_dspacenet") diff --git a/dspace/src/main/docker-compose/docker-compose-iiif.yml b/dspace/src/main/docker-compose/docker-compose-iiif.yml index d795192f13c4..6f5470e5d157 100644 --- a/dspace/src/main/docker-compose/docker-compose-iiif.yml +++ b/dspace/src/main/docker-compose/docker-compose-iiif.yml @@ -10,7 +10,6 @@ # Test environment for DSpace + Cantaloupe for IIIF support. See README for instructions. # This should NEVER be used in production scenarios. # -version: '3.7' networks: # Default to using network named 'dspacenet' from docker-compose.yml. # Its full name will be prepended with the project name (e.g. "-p d7" means it will be named "d7_dspacenet") diff --git a/dspace/src/main/docker-compose/docker-compose-shibboleth.yml b/dspace/src/main/docker-compose/docker-compose-shibboleth.yml index 33eadcb142d7..f7fb2dcbd1ae 100644 --- a/dspace/src/main/docker-compose/docker-compose-shibboleth.yml +++ b/dspace/src/main/docker-compose/docker-compose-shibboleth.yml @@ -10,7 +10,6 @@ # Test environment for DSpace + Shibboleth (running via mod_shib in Apache). See README for instructions. # This should NEVER be used in production scenarios. # -version: '3.7' networks: # Default to using network named 'dspacenet' from docker-compose.yml. # Its full name will be prepended with the project name (e.g. "-p d7" means it will be named "d7_dspacenet") diff --git a/dspace/src/main/docker/README.md b/dspace/src/main/docker/README.md index fdd5ffd6ab3e..5dd4e0ca2ea2 100644 --- a/dspace/src/main/docker/README.md +++ b/dspace/src/main/docker/README.md @@ -21,8 +21,6 @@ docker build -t dspace/dspace-dependencies:latest -f Dockerfile.dependencies . This image is built *automatically* after each commit is made to the `main` branch. -A corresponding image exists for DSpace 4-6. - Admins to our DockerHub repo can manually publish with the following command. ``` docker push dspace/dspace-dependencies:latest @@ -30,9 +28,9 @@ docker push dspace/dspace-dependencies:latest ## Dockerfile.test (in root folder) -This Dockerfile builds a DSpace 7 backend image (for testing/development). +This Dockerfile builds a DSpace REST API backend image (for testing/development). This image deploys one webapp to Tomcat running in Docker: -1. The DSpace 7 REST API (at `http://localhost:8080/server`) +1. The DSpace REST API (at `http://localhost:8080/server`) This image also sets up debugging in Tomcat for development. ``` @@ -41,8 +39,6 @@ docker build -t dspace/dspace:latest-test -f Dockerfile.test . This image is built *automatically* after each commit is made to the `main` branch. -A corresponding image exists for DSpace 4-6. - Admins to our DockerHub repo can manually publish with the following command. ``` docker push dspace/dspace:latest-test @@ -50,9 +46,9 @@ docker push dspace/dspace:latest-test ## Dockerfile (in root folder) -This Dockerfile builds a DSpace 7 backend image. +This Dockerfile builds a DSpace REST API backend image. This image deploys one DSpace webapp to Tomcat running in Docker: -1. The DSpace 7 REST API (at `http://localhost:8080/server`) +1. The DSpace REST API (at `http://localhost:8080/server`) ``` docker build -t dspace/dspace:latest -f Dockerfile . @@ -60,8 +56,6 @@ docker build -t dspace/dspace:latest -f Dockerfile . This image is built *automatically* after each commit is made to the `main` branch. -A corresponding image exists for DSpace 4-6. - Admins to our DockerHub repo can publish with the following command. ``` docker push dspace/dspace:latest @@ -69,15 +63,13 @@ docker push dspace/dspace:latest ## Dockerfile.cli (in root folder) -This Dockerfile builds a DSpace 7 CLI (command line interface) image, which can be used to run DSpace's commandline tools via Docker. +This Dockerfile builds a DSpace CLI (command line interface) image, which can be used to run DSpace's commandline tools via Docker. ``` docker build -t dspace/dspace-cli:latest -f Dockerfile.cli . ``` This image is built *automatically* after each commit is made to the `main` branch. -A corresponding image exists for DSpace 6. - Admins to our DockerHub repo can publish with the following command. ``` docker push dspace/dspace-cli:latest @@ -100,8 +92,6 @@ cd dspace/src/main/docker/dspace-postgres-pgcrypto docker build -t dspace/dspace-postgres-pgcrypto:latest --build-arg POSTGRES_VERSION=11 --build-arg POSTGRES_PASSWORD=mypass . ``` -A copy of this file exists in the DSpace 6 branch. A specialized version of this file exists for DSpace 4 in DSpace-Docker-Images. - Admins to our DockerHub repo can (manually) publish with the following command. ``` docker push dspace/dspace-postgres-pgcrypto:latest @@ -123,8 +113,6 @@ docker build -t dspace/dspace-postgres-pgcrypto:latest-loadsql . Similar to `dspace-postgres-pgcrypto` above, you can also modify the version of PostgreSQL or the PostgreSQL user's password. See examples above. -A copy of this file exists in the DSpace 6 branch. - Admins to our DockerHub repo can (manually) publish with the following command. ``` docker push dspace/dspace-postgres-pgcrypto:latest-loadsql @@ -158,14 +146,14 @@ documentation. Or, to just build and/or run Solr: ```bash docker-compose build dspacesolr -docker-compose -p d7 up -d dspacesolr +docker-compose -p d8 up -d dspacesolr ``` If you're making iterative changes to the DSpace Solr configsets you'll need to rebuild / restart the `dspacesolr` container for the changes to be deployed. From DSpace root: ```bash -docker-compose -p d7 up --detach --build dspacesolr +docker-compose -p d8 up --detach --build dspacesolr ``` ## ./test/ folder diff --git a/dspace/src/main/docker/dspace-postgres-pgcrypto-curl/Dockerfile b/dspace/src/main/docker/dspace-postgres-pgcrypto-curl/Dockerfile index b2131a740262..aabf87df3eda 100644 --- a/dspace/src/main/docker/dspace-postgres-pgcrypto-curl/Dockerfile +++ b/dspace/src/main/docker/dspace-postgres-pgcrypto-curl/Dockerfile @@ -10,7 +10,7 @@ # docker build --build-arg POSTGRES_VERSION=13 --build-arg POSTGRES_PASSWORD=mypass ./dspace/src/main/docker/dspace-postgres-pgcrypto-curl/ # This will be published as dspace/dspace-postgres-pgcrypto:$DSPACE_VERSION-loadsql -ARG POSTGRES_VERSION=13 +ARG POSTGRES_VERSION=15 ARG POSTGRES_PASSWORD=dspace FROM postgres:${POSTGRES_VERSION} diff --git a/dspace/src/main/docker/dspace-postgres-pgcrypto-curl/install-pgcrypto.sh b/dspace/src/main/docker/dspace-postgres-pgcrypto-curl/install-pgcrypto.sh index 3f8e95e1044f..d8e0382010df 100644 --- a/dspace/src/main/docker/dspace-postgres-pgcrypto-curl/install-pgcrypto.sh +++ b/dspace/src/main/docker/dspace-postgres-pgcrypto-curl/install-pgcrypto.sh @@ -23,7 +23,6 @@ then rm /tmp/dspace-db-init.sql touch $CHECKFILE - exit fi # If $LOCALSQL environment variable set, then simply run it in PostgreSQL @@ -34,15 +33,14 @@ then psql -U $POSTGRES_USER < ${LOCALSQL} touch $CHECKFILE - exit fi # Then, setup pgcrypto on this database psql -v ON_ERROR_STOP=1 --username "$POSTGRES_USER" <<-EOSQL -- Create a new schema in this database named "extensions" (or whatever you want to name it) - CREATE SCHEMA extensions; + CREATE SCHEMA IF NOT EXISTS extensions; -- Enable this extension in this new schema - CREATE EXTENSION pgcrypto SCHEMA extensions; + CREATE EXTENSION IF NOT EXISTS pgcrypto WITH SCHEMA extensions; -- Update your database's "search_path" to also search the new "extensions" schema. -- You are just appending it on the end of the existing comma-separated list. ALTER DATABASE dspace SET search_path TO "\$user",public,extensions; diff --git a/dspace/src/main/docker/dspace-postgres-pgcrypto/Dockerfile b/dspace/src/main/docker/dspace-postgres-pgcrypto/Dockerfile index 7dde1a6bfd1c..2298cd4e76ea 100644 --- a/dspace/src/main/docker/dspace-postgres-pgcrypto/Dockerfile +++ b/dspace/src/main/docker/dspace-postgres-pgcrypto/Dockerfile @@ -10,7 +10,7 @@ # docker build --build-arg POSTGRES_VERSION=13 --build-arg POSTGRES_PASSWORD=mypass ./dspace/src/main/docker/dspace-postgres-pgcrypto/ # This will be published as dspace/dspace-postgres-pgcrypto:$DSPACE_VERSION -ARG POSTGRES_VERSION=13 +ARG POSTGRES_VERSION=15 ARG POSTGRES_PASSWORD=dspace FROM postgres:${POSTGRES_VERSION} diff --git a/dspace/src/main/docker/dspace-postgres-pgcrypto/install-pgcrypto.sh b/dspace/src/main/docker/dspace-postgres-pgcrypto/install-pgcrypto.sh index 65405aa7bdb6..67c4539b5a46 100644 --- a/dspace/src/main/docker/dspace-postgres-pgcrypto/install-pgcrypto.sh +++ b/dspace/src/main/docker/dspace-postgres-pgcrypto/install-pgcrypto.sh @@ -11,9 +11,9 @@ set -e psql -v ON_ERROR_STOP=1 --username "$POSTGRES_USER" <<-EOSQL -- Create a new schema in this database named "extensions" (or whatever you want to name it) - CREATE SCHEMA extensions; + CREATE SCHEMA IF NOT EXISTS extensions; -- Enable this extension in this new schema - CREATE EXTENSION pgcrypto SCHEMA extensions; + CREATE EXTENSION IF NOT EXISTS pgcrypto WITH SCHEMA extensions; -- Update your database's "search_path" to also search the new "extensions" schema. -- You are just appending it on the end of the existing comma-separated list. ALTER DATABASE dspace SET search_path TO "\$user",public,extensions; diff --git a/dspace/src/main/docker/dspace-shibboleth/httpd-shibd-foreground.sh b/dspace/src/main/docker/dspace-shibboleth/httpd-shibd-foreground.sh old mode 100644 new mode 100755 diff --git a/dspace/src/main/docker/test/rest_web.xml b/dspace/src/main/docker/test/rest_web.xml deleted file mode 100644 index 05a626869265..000000000000 --- a/dspace/src/main/docker/test/rest_web.xml +++ /dev/null @@ -1,118 +0,0 @@ - - - - - - - dspace.request - org.dspace.utils.servlet.DSpaceWebappServletFilter - - - - dspace.request - /* - - - - - springSecurityFilterChain - org.springframework.web.filter.DelegatingFilterProxy - - - - springSecurityFilterChain - /* - - - - - DSpace REST API - - org.glassfish.jersey.servlet.ServletContainer - - - javax.ws.rs.Application - org.dspace.rest.DSpaceRestApplication - - 1 - - - - DSpace REST API - /* - - - - default - /static/* - - - - - - - - - The location of the DSpace home directory - - dspace.dir - ${dspace.dir} - - - - contextConfigLocation - - /WEB-INF/applicationContext.xml, - /WEB-INF/security-applicationContext.xml - - - - - org.dspace.app.util.DSpaceContextListener - - - - - org.dspace.servicemanager.servlet.DSpaceKernelServletContextListener - - - - - org.springframework.web.context.ContextLoaderListener - - - - - org.dspace.app.util.DSpaceWebappListener - - - - \ No newline at end of file diff --git a/pom.xml b/pom.xml index 18de8395fa7e..e1a2eebc5d6c 100644 --- a/pom.xml +++ b/pom.xml @@ -18,13 +18,14 @@ - 11 - 5.3.32 - 2.7.18 - 5.7.11 - 5.6.15.Final - 6.2.5.Final - 42.7.2 + 17 + 6.1.8 + 3.2.6 + 6.2.4 + 6.4.8.Final + 8.0.1.Final + 42.7.3 + 10.10.0 8.11.3 3.10.8 @@ -32,33 +33,32 @@ 2.16.0 2.16.0 - 1.3.2 - 2.3.1 - 2.3.9 + 2.1.1 + 4.0.2 + 4.0.5 1.1.1 9.4.54.v20240208 - 2.22.1 - 2.0.30 + 2.23.1 + 2.0.31 1.19.0 - 1.7.36 - 2.5.0 - - 1.70 - + 2.0.11 + 2.9.2 + + 1.78.1 + 8.0.1 + + 3.1.5 2.9.0 - 7.9 + 9.37.3 - - 2.13.0 - - 2.39.1 + + 4.9.0 [cris-2023.02.06-SNAPSHOT,cris-2023.02.07-SNAPSHOT) @@ -100,7 +100,7 @@ org.apache.maven.plugins maven-enforcer-plugin - 3.0.0-M3 + 3.4.1 enforce-java @@ -113,7 +113,7 @@ ${java.version} - [3.0.5,) + [3.8,) @@ -151,9 +151,9 @@ org.apache.maven.plugins maven-compiler-plugin - 3.8.1 + 3.13.0 - 11 + ${java.version} true @@ -170,6 +170,9 @@ -J--add-opens=jdk.compiler/com.sun.tools.javac.code=ALL-UNNAMED -J--add-opens=jdk.compiler/com.sun.tools.javac.comp=ALL-UNNAMED -Xpkginfo:always + + -parameters @@ -184,7 +187,7 @@ org.apache.maven.plugins maven-jar-plugin - 3.2.0 + 3.3.0 @@ -198,7 +201,7 @@ org.apache.maven.plugins maven-war-plugin - 3.2.3 + 3.4.0 false @@ -215,7 +218,7 @@ org.apache.maven.plugins maven-surefire-plugin - 2.22.2 + 3.2.5 @@ -230,6 +233,9 @@ false ${skipUnitTests} + + false maven-failsafe-plugin - 2.22.2 + 3.2.5 @@ -253,6 +259,9 @@ false ${skipIntegrationTests} + + false @@ -297,7 +306,7 @@ com.puppycrawl.tools checkstyle - 8.30 + 8.38 @@ -330,7 +339,7 @@ maven-clean-plugin - 3.1.0 + 3.3.2 @@ -344,17 +353,17 @@ maven-assembly-plugin - 3.6.0 + 3.7.1 org.apache.maven.plugins maven-dependency-plugin - 3.1.2 + 3.6.1 org.apache.maven.plugins maven-resources-plugin - 3.1.0 + 3.3.1 @@ -366,13 +375,13 @@ org.sonatype.plugins nexus-staging-maven-plugin - 1.6.8 + 1.6.13 org.apache.maven.plugins maven-javadoc-plugin - 3.2.0 + 3.6.3 false @@ -387,7 +396,7 @@ org.apache.maven.plugins maven-source-plugin - 3.2.1 + 3.3.0 @@ -400,13 +409,13 @@ org.apache.maven.plugins maven-gpg-plugin - 1.6 + 3.2.1 org.jacoco jacoco-maven-plugin - 0.8.5 + 0.8.11 @@ -418,7 +427,7 @@ org.apache.maven.plugins maven-release-plugin - 2.5.3 + 3.0.0 @@ -447,6 +456,8 @@ + + **/src/main/java/org/dspace/servicemanager/config/DSpaceConfigurationPropertySource.java **/src/test/resources/** **/src/test/data/** **/src/main/license/** @@ -721,7 +732,7 @@ Apache Software License, Version 2.0|The SAX License|The W3C License Apache Software License, Version 2.0|Similar to Apache License but with the acknowledgment clause removed - BSD License|The BSD License|BSD licence|BSD license|BSD|BSD-style license|New BSD License|New BSD license|Revised BSD License|BSD 2-Clause license|3-Clause BSD License|BSD 2-Clause|BSD 3-clause New License|BSD Licence 3|BSD-2-Clause|BSD-3-Clause|Modified BSD|The New BSD License|The BSD 3-Clause License (BSD3)|BSD License 3 + BSD License|The BSD License|BSD licence|BSD license|BSD|BSD-style license|New BSD License|New BSD license|Revised BSD License|BSD 2-Clause license|3-Clause BSD License|BSD 2-Clause|BSD 3-clause New License|BSD Licence 3|BSD-2-Clause|BSD-3-Clause|Modified BSD|The New BSD License|The BSD 3-Clause License (BSD3)|BSD License 3|BSD License 2.0 BSD License|DSpace BSD License|DSpace Sourcecode License @@ -742,20 +753,24 @@ Common Development and Distribution License (CDDL)|GNU General Public License, Version 2 with the Classpath Exception Eclipse Distribution License, Version 1.0|Eclipse Distribution License (EDL), Version 1.0|Eclipse Distribution License - v 1.0|Eclipse Distribution License v. 1.0|EDL 1.0 - Eclipse Public License|Eclipse Public License - Version 1.0|Eclipse Public License - v 1.0|EPL 1.0 license|Eclipse Public License (EPL), Version 1.0|Eclipse Public License 1.0|Eclipse Public License v1.0|Eclipse Public License, Version 1.0|EPL 1.0|EPL 2.0|Eclipse Public License - v 2.0 + Eclipse Public License|Eclipse Public License - Version 1.0|Eclipse Public License - v 1.0|EPL 1.0 license|Eclipse Public License (EPL), Version 1.0|Eclipse Public License 1.0|Eclipse Public License v1.0|Eclipse Public License, Version 1.0|EPL 1.0|EPL 2.0|Eclipse Public License - v 2.0|EPL-2.0|Eclipse Public License 2.0|Eclipse Public License v. 2.0|Eclipse Public License, Version 2.0 Eclipse Public License|Common Public License Version 1.0 Eclipse Public License|The GNU General Public License (GPL), Version 2, With Classpath Exception + + Eclipse Public License|GNU General Public License, version 2 with the GNU Classpath Exception + + Eclipse Public License|GPL-2.0-with-classpath-exception GNU Lesser General Public License (LGPL)|The GNU Lesser General Public License, Version 2.1|GNU Lesser General Public License (LGPL), Version 2.1|GNU LESSER GENERAL PUBLIC LICENSE, Version 2.1|GNU Lesser General Public License, version 2.1|GNU LESSER GENERAL PUBLIC LICENSE|GNU Lesser General Public License|GNU Lesser Public License|GNU Lesser General Public License, Version 2.1|Lesser General Public License (LGPL) v 2.1|LGPL 2.1|LGPL 2.1 license|LGPL 3.0 license|LGPL, v2.1 or later|LGPL|LGPL, version 2.1|lgpl|Lesser General Public License, version 3 or greater GNU Lesser General Public License (LGPL)|GNU Library General Public License v2.1 or later - MIT License|The MIT License|MIT LICENSE|MIT|MIT license|MIT License (MIT) + MIT License|The MIT License|MIT LICENSE|MIT|MIT license|MIT License (MIT)|The MIT License (MIT) MIT License|Bouncy Castle Licence MIT License|(MIT-style) netCDF C library license - Mozilla Public License|Mozilla Public License version 1.1|Mozilla Public License 1.1 (MPL 1.1)|MPL 1.1|Mozilla Public License Version 2.0|Mozilla Public License, Version 2.0 + Mozilla Public License|Mozilla Public License version 1.1|Mozilla Public License 1.1 (MPL 1.1)|MPL 1.1|Mozilla Public License Version 2.0|Mozilla Public License, Version 2.0|Mozilla Public License Version 1.1 Mozilla Public License|MPL 2.0, and EPL 1.0|MPL 2.0 @@ -766,6 +781,8 @@ true src/main/license/LICENSES_THIRD_PARTY.properties + + file:${root.basedir}/src/main/license/LICENSES_THIRD_PARTY.properties @@ -1236,7 +1253,7 @@ org.dspace dspace-api-lang - [7.0.0,8.0.0) + [8.0.0,9.0.0) @@ -1248,19 +1265,19 @@ - org.hibernate + org.hibernate.orm hibernate-core ${hibernate.version} - org.hibernate + org.hibernate.orm hibernate-jpamodelgen ${hibernate.version} - org.hibernate + org.hibernate.orm hibernate-jcache ${hibernate.version} @@ -1272,7 +1289,7 @@ - org.hibernate + org.hibernate.validator hibernate-validator ${hibernate-validator.version} @@ -1285,6 +1302,13 @@ 3.4.3.Final + + + org.antlr + antlr4-runtime + 4.13.1 + + com.rometools @@ -1428,17 +1452,29 @@ org.apache.tika tika-parsers-standard-package ${tika.version} + + + xml-apis + xml-apis + + org.bouncycastle - bcpkix-jdk15on + bcpkix-jdk18on ${bouncycastle.version} org.bouncycastle - bcprov-jdk15on + bcprov-jdk18on + ${bouncycastle.version} + + + + org.bouncycastle + bcutil-jdk18on ${bouncycastle.version} @@ -1451,7 +1487,37 @@ org.ow2.asm asm - 8.0.1 + ${asm.version} + + + org.ow2.asm + asm-analysis + ${asm.version} + + + org.ow2.asm + asm-commons + ${asm.version} + + + org.ow2.asm + asm-tree + ${asm.version} + + + + + org.checkerframework + checker-qual + 3.31.0 + + + + + com.google.code.gson + gson + 2.10.1 - - org.apache.commons - commons-csv - - net.handle handle 9.3.1 - - - - com.google.code.gson - gson - - - + net.cnri cnri-servlet-container - 3.0.0 + 3.1.0 + runtime - + org.eclipse.jetty jetty-server ${jetty.version} + runtime - - org.eclipse.jetty - jetty-alpn-java-server - ${jetty.version} - + org.eclipse.jetty jetty-deploy ${jetty.version} + runtime org.eclipse.jetty jetty-http ${jetty.version} + runtime org.eclipse.jetty jetty-io ${jetty.version} + runtime org.eclipse.jetty jetty-servlet ${jetty.version} - - - org.eclipse.jetty - jetty-servlets - ${jetty.version} + runtime org.eclipse.jetty jetty-util ${jetty.version} + runtime org.eclipse.jetty jetty-webapp ${jetty.version} - - - org.eclipse.jetty - jetty-xml - ${jetty.version} + runtime org.eclipse.jetty.http2 http2-common ${jetty.version} - - - org.eclipse.jetty.http2 - http2-server - ${jetty.version} + runtime @@ -1617,17 +1655,19 @@ org.apache.commons commons-configuration2 - 2.9.0 + 2.10.1 org.apache.commons commons-dbcp2 2.11.0 - - - commons-fileupload - commons-fileupload - 1.5 + + + + jakarta.transaction + jakarta.transaction-api + + commons-io @@ -1639,13 +1679,23 @@ commons-lang3 3.14.0 - + commons-logging commons-logging 1.3.0 + + org.apache.commons + commons-compress + 1.26.0 + + + org.apache.commons + commons-csv + 1.10.0 + org.apache.commons commons-pool2 @@ -1667,14 +1717,32 @@ 2.12.5 - com.sun.mail - javax.mail - 1.6.2 + jakarta.activation + jakarta.activation-api + 2.1.3 + - javax.servlet - javax.servlet-api - 3.1.0 + jakarta.mail + jakarta.mail-api + 2.1.3 + provided + + + + org.eclipse.angus + jakarta.mail + 2.0.3 + + + jakarta.servlet + jakarta.servlet-api + 6.0.0 + + + jakarta.el + jakarta.el-api + 5.0.1 @@ -1802,6 +1870,12 @@ ${errorprone.version} compile + + com.google.errorprone + error_prone_annotations + ${errorprone.version} + compile + org.hamcrest @@ -1906,6 +1980,11 @@ jackson-databind ${jackson-databind.version} + + com.fasterxml.jackson.datatype + jackson-datatype-jsr310 + ${jackson-databind.version} + com.google.guava guava @@ -1922,6 +2001,12 @@ xom xom 1.3.9 + + + xml-apis + xml-apis + + @@ -1940,8 +2025,8 @@ - javax.xml.bind - jaxb-api + jakarta.xml.bind + jakarta.xml.bind-api ${jaxb-api.version} @@ -1951,9 +2036,9 @@ runtime - javax.annotation - javax.annotation-api - ${javax-annotation.version} + jakarta.annotation + jakarta.annotation-api + ${jakarta-annotation.version} @@ -2095,8 +2180,11 @@ - maven-central + central https://repo.maven.apache.org/maven2 + + false + @@ -2114,6 +2202,9 @@ handle.net https://handle.net/maven + + false + 4science-repo-nexus diff --git a/src/main/license/LICENSES_THIRD_PARTY.properties b/src/main/license/LICENSES_THIRD_PARTY.properties index e893f9b85e31..e76edffc55a0 100644 --- a/src/main/license/LICENSES_THIRD_PARTY.properties +++ b/src/main/license/LICENSES_THIRD_PARTY.properties @@ -13,89 +13,17 @@ # 1) PLEASE CHECK THE "[src]/LICENSES_THIRD_PARTY" FILE FOR SPECIFIC LICENSE NAMES! # 2) Also please add a link/URL to where you looked up the license -# http://asm.ow2.org/ -asm--asm--3.1=BSD License - -# http://www.h2database.com/html/license.html -com.h2database--h2--1.4.187=Mozilla Public License - -# https://projects.apache.org/projects/commons_jexl.html -commons-jexl--commons-jexl--1.0=Apache Software License, Version 2.0 - -concurrent--concurrent--1.3.4=Public Domain - -# http://dom4j.sourceforge.net/dom4j-1.6.1/license.html -dom4j--dom4j--1.6.1=BSD License - -# http://jakarta.apache.org/regexp/ -jakarta-regexp--jakarta-regexp--1.4=Apache Software License, Version 2.0 - -# https://java.net/projects/servlet-spec/ -javax.servlet--jsp-api--2.0=Common Development and Distribution License (CDDL) -javax.servlet--jstl--1.2=Common Development and Distribution License (CDDL) -javax.servlet--servlet-api--2.5=Common Development and Distribution License (CDDL) +# https://github.com/albfernandez/juniversalchardet/blob/main/LICENSE +com.github.albfernandez--juniversalchardet--2.4.0=Mozilla Public License # https://github.com/jankotek/JDBM3 jdbm--jdbm--1.0=Apache Software License, Version 2.0 -# https://github.com/hunterhacker/jdom/blob/master/LICENSE.txt -# http://www.jdom.org/docs/faq.html#a0030 -jdom--jdom--1.0=JDOM License (Apache-style license) -jdom--jdom--1.1.3=JDOM License (Apache-style license) - # https://github.com/stephenc/jcip-annotations/blob/master/LICENSE.txt net.jcip--jcip-annotations--1.0=Apache Software License, Version 2.0 -# http://ant.apache.org/ -org.apache.ant--ant--1.7.0=Apache Software License, Version 2.0 -org.apache.ant--ant-launcher--1.7.0=Apache Software License, Version 2.0 - -# http://zookeeper.apache.org/ -org.apache.zookeeper--zookeeper--3.4.6=Apache Software License, Version 2.0 - -# http://jettison.codehaus.org/ -org.codehaus.jettison--jettison--1.1=Apache Software License, Version 2.0 - -# DSpace Licenses are all BSD -org.dspace--handle--6.2=BSD License -org.dspace--jargon--1.4.25=BSD License -org.dspace--mets--1.5.2=BSD License -org.dspace--oclc-harvester2--0.1.12=BSD License - -# https://github.com/hibernate/hibernate-jpa-api -org.hibernate.javax.persistence--hibernate-jpa-2.0-api--1.0.1.Final=Eclipse Public License - -# Swingworker: https://java.net/projects/swingworker -org.jdesktop--swing-worker--1.1=GNU Lesser General Public License (LGPL) - -# https://java.net/projects/tiger-types -org.jvnet--tiger-types--1.4=Common Development and Distribution License (CDDL) - -# https://maven-repository.com/ -org.restlet.jee--org.restlet--2.1.1=Apache Software License, Version 2.0 -org.restlet.jee--org.restlet.ext.servlet--2.1.1=Apache Software License, Version 2.0 - -# http://swordapp.org/ -org.swordapp--sword-common--1.1=Apache Software License, Version 2.0 - -# Apache Jakarta ORO: http://svn.apache.org/repos/asf/jakarta/oro/trunk/LICENSE -oro--oro--2.0.8=Apache Software License, Version 2.0 - -# http://rometools.org/ -rome--rome--1.0=Apache Software License, Version 2.0 - -# https://tomcat.apache.org/taglibs/license.html -taglibs--standard--1.1.2=Apache Software License, Version 2.0 - -# Apache XML (xalan): http://xml.apache.org/xalan-j/#license -xalan--xalan--2.7.0=Apache Software License, Version 2.0 - -# Apache Xerces: http://xerces.apache.org/ -xerces--xmlParserAPIs--2.6.2=Apache Software License, Version 2.0 - -# Apache XML Commons: http://xerces.apache.org/xml-commons/licenses.html -xml-apis--xml-apis--1.4.01=Apache Software License, Version 2.0 -xml-apis--xmlParserAPIs--2.0.2=Apache Software License, Version 2.0 - -# http://www.xom.nu/ -xom--xom--1.1=GNU Lesser General Public License (LGPL) +# Jersey is dual licensed EPL and GPL. We use EPL +# https://eclipse-ee4j.github.io/jersey.github.io/license.html +org.glassfish.jersey.core--jersey-client--3.1.5=Eclipse Public License +org.glassfish.jersey.inject--jersey-hk2--3.1.5=Eclipse Public License +org.glassfish.jersey.media--jersey-media-multipart--3.1.3=Eclipse Public License \ No newline at end of file From 5c23c4ec208008324ff1221c936994285d2542e5 Mon Sep 17 00:00:00 2001 From: Andrea Bollini Date: Sun, 8 Sep 2024 16:20:05 +0200 Subject: [PATCH 02/35] DSC-1848 fix compilation issues moving to jakarta EE --- .../org/dspace/app/batch/ItemImportOA.java | 2 +- .../BulkImportWorkbookBuilderImpl.java | 2 +- .../org/dspace/app/metrics/CrisMetrics.java | 24 +++---- .../app/metrics/dao/CrisMetricsDAOImpl.java | 12 ++-- .../java/org/dspace/batch/ImpBitstream.java | 25 ++++---- .../batch/ImpBitstreamMetadatavalue.java | 25 ++++---- .../org/dspace/batch/ImpMetadatavalue.java | 25 ++++---- .../main/java/org/dspace/batch/ImpRecord.java | 17 ++--- .../org/dspace/batch/ImpWorkflowNState.java | 19 +++--- .../batch/dao/impl/ImpBitstreamDAOImpl.java | 2 +- .../ImpBitstreamMetadatavalueDAOImpl.java | 2 +- .../dao/impl/ImpMetadatavalueDAOImpl.java | 2 +- .../batch/dao/impl/ImpRecordDAOImpl.java | 2 +- .../dao/impl/ImpWorkflowNStateDAOImpl.java | 2 +- .../service/impl/EditItemModeServiceImpl.java | 2 +- .../service/impl/EditItemServiceImpl.java | 4 +- .../METSStreamDisseminationCrosswalk.java | 2 +- .../crosswalks/ReferCrosswalk.java | 2 +- .../crosswalks/TabularCrosswalk.java | 2 +- .../security/MetadataSecurityServiceImpl.java | 4 +- .../dspace/deduplication/Deduplication.java | 20 +++--- .../dao/impl/DeduplicationDAOImpl.java | 2 +- .../eperson/RegistrationDataMetadata.java | 28 ++++---- .../org/dspace/eperson/SubscribeCLITool.java | 2 +- .../harvest/OAIHarvesterEmailSenderImpl.java | 2 +- .../identifier/DOIIdentifierProvider.java | 2 +- .../OpenAIREProjectFieldMapping.java | 2 +- .../metadatamapping/OpenAireFieldMapping.java | 2 +- .../vufind/callable/CountByQueryCallable.java | 6 +- .../callable/FindMatchingRecordsCallable.java | 6 +- .../callable/GetByVuFindIdCallable.java | 7 +- .../callable/SearchByQueryCallable.java | 7 +- .../java/org/dspace/layout/CrisLayoutBox.java | 32 +++++----- .../dspace/layout/CrisLayoutBox2Field.java | 20 +++--- .../dspace/layout/CrisLayoutBox2FieldId.java | 5 +- .../layout/CrisLayoutBox2SecurityGroup.java | 18 +++--- .../org/dspace/layout/CrisLayoutCell.java | 26 ++++---- .../org/dspace/layout/CrisLayoutField.java | 34 +++++----- .../layout/CrisLayoutFieldBitstream.java | 6 +- .../layout/CrisLayoutFieldMetadata.java | 4 +- .../dspace/layout/CrisLayoutMetric2Box.java | 23 ++++--- .../java/org/dspace/layout/CrisLayoutRow.java | 26 ++++---- .../java/org/dspace/layout/CrisLayoutTab.java | 38 +++++------ .../dspace/layout/CrisLayoutTab2BoxId.java | 5 +- .../layout/CrisLayoutTab2SecurityGroup.java | 18 +++--- .../org/dspace/layout/CrisMetadataGroup.java | 21 +++--- .../layout/dao/impl/CrisLayoutBoxDAOImpl.java | 12 ++-- .../dao/impl/CrisLayoutFieldDAOImpl.java | 10 +-- .../impl/CrisLayoutMetadataGroupDAOImpl.java | 12 ++-- .../layout/dao/impl/CrisLayoutTabDAOImpl.java | 14 ++-- .../impl/CrisLayoutToolValidatorImpl.java | 2 +- .../impl/CrisLayoutTabServiceImpl.java | 2 +- .../dspace/metrics/scopus/CrisMetricDTO.java | 4 +- .../dspace/storage/rdbms/DatabaseUtils.java | 4 +- .../rdbms/hibernate/DatabaseAwareLobType.java | 57 ----------------- .../dspace/validation/CclicenseValidator.java | 2 +- .../service/impl/ValidationServiceImpl.java | 2 +- .../CheckCorrectionAction.java | 2 +- .../org/dspace/app/bulkedit/BulkImportIT.java | 3 +- .../dspace/app/bulkedit/MetadataImportIT.java | 1 + .../FileTypeMetadataEnhancerConsumerIT.java | 3 +- ...lationshipItemWritePolicyAuthorizerIT.java | 3 +- .../org/dspace/builder/BitstreamBuilder.java | 6 -- .../crosswalks/XlsCollectionCrosswalkIT.java | 39 ++++++----- ...youtTabMetadatasecurityRestController.java | 4 +- .../app/rest/DiscoveryExportController.java | 6 +- .../EPersonRegistrationRestController.java | 4 +- .../app/rest/OrcidWebhookRestController.java | 4 +- .../app/rest/converter/EditItemConverter.java | 9 +-- .../converter/RegistrationDataConverter.java | 2 +- .../converter/SubmissionFormConverter.java | 2 +- .../rest/login/impl/LoginEventFireAction.java | 3 +- .../AuditEventEPersonLinkRepository.java | 4 +- .../AuditEventObjectLinkRepository.java | 4 +- .../AuditEventSubjectLinkRepository.java | 4 +- .../CrisLayoutTabMetadataLinkRepository.java | 4 +- .../CrisLayoutTabRestRepository.java | 2 +- .../EditItemModeLinkRepository.java | 4 +- .../repository/EditItemRestRepository.java | 4 +- .../repository/ItemMetricsLinkRepository.java | 6 +- .../DSpaceCsrfIgnoringRequestMatcher.java | 3 +- .../security/OidcAuthenticationFilter.java | 49 -------------- .../security/OrcidAuthenticationFilter.java | 53 --------------- .../rest/security/UserAgreementFilter.java | 8 +-- .../security/jwt/MachineClaimProvider.java | 2 +- .../jwt/UserAgreementClaimProvider.java | 2 +- .../impl/CustomUrlRemoveOperation.java | 3 +- .../impl/CustomUrlReplaceOperation.java | 2 +- .../DetectDuplicateAddPatchOperation.java | 2 +- .../submit/factory/impl/PatchOperation.java | 9 --- .../impl/RedirectedUrlAddOperation.java | 3 +- .../impl/RedirectedUrlRemoveOperation.java | 3 +- .../app/rest/submit/step/CorrectionStep.java | 2 +- .../app/rest/submit/step/CustomUrlStep.java | 2 +- .../step/DetectPotentialDuplicateStep.java | 2 +- .../org/dspace/app/rest/CustomUrlStepIT.java | 2 +- .../dspace/app/rest/DefaultWorkflowIT.java | 2 +- .../rest/EPersonGroupRestControllerIT.java | 2 +- .../EPersonRestRepositoryInviationIT.java | 2 +- .../app/rest/EditItemRestRepositoryIT.java | 2 +- .../dspace/app/rest/ItemRestRepositoryIT.java | 12 ++-- .../org/dspace/app/rest/LayoutSecurityIT.java | 64 +++++++++---------- .../dspace/app/rest/PatchWithAuthorityIT.java | 2 +- ...sticsRestSearchByCategoryRepositoryIT.java | 10 +-- .../rest/SubmissionDeduplicationRestIT.java | 2 +- .../app/rest/VocabularyRestRepositoryIT.java | 2 +- .../app/rest/WorkspaceItemPatentStepIT.java | 2 +- .../authorization/EditMetadataFeatureIT.java | 6 +- .../layout/CrisLayoutTabRestRepositoryIT.java | 2 +- .../jwt/UserAgreementClaimProviderTest.java | 2 +- 110 files changed, 428 insertions(+), 614 deletions(-) delete mode 100644 dspace-api/src/main/java/org/dspace/storage/rdbms/hibernate/DatabaseAwareLobType.java delete mode 100644 dspace-server-webapp/src/main/java/org/dspace/app/rest/security/OidcAuthenticationFilter.java delete mode 100644 dspace-server-webapp/src/main/java/org/dspace/app/rest/security/OrcidAuthenticationFilter.java diff --git a/dspace-api/src/main/java/org/dspace/app/batch/ItemImportOA.java b/dspace-api/src/main/java/org/dspace/app/batch/ItemImportOA.java index f74146ab91d8..3732c2c82265 100644 --- a/dspace-api/src/main/java/org/dspace/app/batch/ItemImportOA.java +++ b/dspace-api/src/main/java/org/dspace/app/batch/ItemImportOA.java @@ -22,9 +22,9 @@ import java.util.StringTokenizer; import java.util.UUID; import java.util.stream.Collectors; -import javax.mail.MessagingException; import javax.xml.transform.TransformerException; +import jakarta.mail.MessagingException; import org.apache.commons.cli.CommandLine; import org.apache.commons.cli.CommandLineParser; import org.apache.commons.cli.HelpFormatter; diff --git a/dspace-api/src/main/java/org/dspace/app/bulkimport/service/BulkImportWorkbookBuilderImpl.java b/dspace-api/src/main/java/org/dspace/app/bulkimport/service/BulkImportWorkbookBuilderImpl.java index 7831355a7fb2..09683e09d099 100644 --- a/dspace-api/src/main/java/org/dspace/app/bulkimport/service/BulkImportWorkbookBuilderImpl.java +++ b/dspace-api/src/main/java/org/dspace/app/bulkimport/service/BulkImportWorkbookBuilderImpl.java @@ -33,8 +33,8 @@ import java.util.function.BiConsumer; import java.util.logging.Level; import java.util.stream.Collectors; -import javax.annotation.PostConstruct; +import jakarta.annotation.PostConstruct; import org.apache.commons.collections4.CollectionUtils; import org.apache.commons.lang3.ArrayUtils; import org.apache.commons.lang3.StringUtils; diff --git a/dspace-api/src/main/java/org/dspace/app/metrics/CrisMetrics.java b/dspace-api/src/main/java/org/dspace/app/metrics/CrisMetrics.java index 98b8e29d51c1..09c5a19066f6 100644 --- a/dspace-api/src/main/java/org/dspace/app/metrics/CrisMetrics.java +++ b/dspace-api/src/main/java/org/dspace/app/metrics/CrisMetrics.java @@ -7,19 +7,20 @@ */ package org.dspace.app.metrics; import java.util.Date; -import javax.persistence.Entity; -import javax.persistence.GeneratedValue; -import javax.persistence.GenerationType; -import javax.persistence.Id; -import javax.persistence.JoinColumn; -import javax.persistence.Lob; -import javax.persistence.ManyToOne; -import javax.persistence.SequenceGenerator; -import javax.persistence.Table; +import jakarta.persistence.Column; +import jakarta.persistence.Entity; +import jakarta.persistence.GeneratedValue; +import jakarta.persistence.GenerationType; +import jakarta.persistence.Id; +import jakarta.persistence.JoinColumn; +import jakarta.persistence.Lob; +import jakarta.persistence.ManyToOne; +import jakarta.persistence.SequenceGenerator; +import jakarta.persistence.Table; import org.dspace.content.DSpaceObject; import org.dspace.core.ReloadableEntity; -import org.hibernate.annotations.Type; +import org.hibernate.Length; /** * @@ -50,8 +51,7 @@ public class CrisMetrics implements ReloadableEntity { private boolean last; - @Lob - @Type(type = "org.dspace.storage.rdbms.hibernate.DatabaseAwareLobType") + @Column(name="remark", length = Length.LONG32) private String remark; private Double deltaPeriod1; diff --git a/dspace-api/src/main/java/org/dspace/app/metrics/dao/CrisMetricsDAOImpl.java b/dspace-api/src/main/java/org/dspace/app/metrics/dao/CrisMetricsDAOImpl.java index 6fc2f7575abe..f85cba942eb7 100644 --- a/dspace-api/src/main/java/org/dspace/app/metrics/dao/CrisMetricsDAOImpl.java +++ b/dspace-api/src/main/java/org/dspace/app/metrics/dao/CrisMetricsDAOImpl.java @@ -12,12 +12,12 @@ import java.util.LinkedList; import java.util.List; import java.util.UUID; -import javax.persistence.Query; -import javax.persistence.criteria.CriteriaBuilder; -import javax.persistence.criteria.CriteriaQuery; -import javax.persistence.criteria.Join; -import javax.persistence.criteria.Root; +import jakarta.persistence.Query; +import jakarta.persistence.criteria.CriteriaBuilder; +import jakarta.persistence.criteria.CriteriaQuery; +import jakarta.persistence.criteria.Join; +import jakarta.persistence.criteria.Root; import org.dspace.app.metrics.CrisMetrics; import org.dspace.app.metrics.CrisMetrics_; import org.dspace.content.DSpaceObject; @@ -45,7 +45,7 @@ public List findAll(Context context, Integer limit, Integer offset) Root crisMetricsRoot = criteriaQuery.from(CrisMetrics.class); criteriaQuery.select(crisMetricsRoot); - List orderList = new LinkedList<>(); + List orderList = new LinkedList<>(); orderList.add(criteriaBuilder.asc(crisMetricsRoot.get(CrisMetrics_.id))); criteriaQuery.orderBy(orderList); diff --git a/dspace-api/src/main/java/org/dspace/batch/ImpBitstream.java b/dspace-api/src/main/java/org/dspace/batch/ImpBitstream.java index c8b3540120b4..a7b87adef6ef 100644 --- a/dspace-api/src/main/java/org/dspace/batch/ImpBitstream.java +++ b/dspace-api/src/main/java/org/dspace/batch/ImpBitstream.java @@ -7,20 +7,20 @@ */ package org.dspace.batch; +import java.sql.Types; import java.util.UUID; -import javax.persistence.Cacheable; -import javax.persistence.Column; -import javax.persistence.Entity; -import javax.persistence.FetchType; -import javax.persistence.Id; -import javax.persistence.JoinColumn; -import javax.persistence.Lob; -import javax.persistence.ManyToOne; -import javax.persistence.Table; -import javax.persistence.Transient; +import jakarta.persistence.Cacheable; +import jakarta.persistence.Column; +import jakarta.persistence.Entity; +import jakarta.persistence.FetchType; +import jakarta.persistence.Id; +import jakarta.persistence.JoinColumn; +import jakarta.persistence.ManyToOne; +import jakarta.persistence.Table; +import jakarta.persistence.Transient; import org.hibernate.annotations.CacheConcurrencyStrategy; -import org.hibernate.annotations.Type; +import org.hibernate.annotations.JdbcTypeCode; /*** * Contains all the information related to bitstreams to attach / replace in the @@ -77,9 +77,8 @@ public class ImpBitstream { @Column(name = "name", length = 512) private String name; - @Lob @Column(name = "imp_blob") - @Type(type = "org.hibernate.type.BinaryType") + @JdbcTypeCode(Types.VARBINARY) private byte[] impBlob; @Column(name = "embargo_policy") diff --git a/dspace-api/src/main/java/org/dspace/batch/ImpBitstreamMetadatavalue.java b/dspace-api/src/main/java/org/dspace/batch/ImpBitstreamMetadatavalue.java index ac98304774b1..21c2656e1985 100644 --- a/dspace-api/src/main/java/org/dspace/batch/ImpBitstreamMetadatavalue.java +++ b/dspace-api/src/main/java/org/dspace/batch/ImpBitstreamMetadatavalue.java @@ -7,18 +7,17 @@ */ package org.dspace.batch; -import javax.persistence.Cacheable; -import javax.persistence.Column; -import javax.persistence.Entity; -import javax.persistence.FetchType; -import javax.persistence.Id; -import javax.persistence.JoinColumn; -import javax.persistence.Lob; -import javax.persistence.ManyToOne; -import javax.persistence.Table; - +import jakarta.persistence.Cacheable; +import jakarta.persistence.Column; +import jakarta.persistence.Entity; +import jakarta.persistence.FetchType; +import jakarta.persistence.Id; +import jakarta.persistence.JoinColumn; +import jakarta.persistence.ManyToOne; +import jakarta.persistence.Table; + +import org.hibernate.Length; import org.hibernate.annotations.CacheConcurrencyStrategy; -import org.hibernate.annotations.Type; /*** * Contains all the metadata associated to a bitstream that need to be created @@ -49,9 +48,7 @@ public class ImpBitstreamMetadatavalue { @Column(name = "imp_qualifier", length = 128) private String impQualifier; - @Lob - @Column(name = "imp_value") - @Type(type = "org.dspace.storage.rdbms.hibernate.DatabaseAwareLobType") + @Column(name = "imp_value", length = Length.LONG32) private String impValue; @Column(name = "imp_authority", length = 256) diff --git a/dspace-api/src/main/java/org/dspace/batch/ImpMetadatavalue.java b/dspace-api/src/main/java/org/dspace/batch/ImpMetadatavalue.java index b031e058ad16..94bef2b4cb8d 100644 --- a/dspace-api/src/main/java/org/dspace/batch/ImpMetadatavalue.java +++ b/dspace-api/src/main/java/org/dspace/batch/ImpMetadatavalue.java @@ -7,18 +7,18 @@ */ package org.dspace.batch; -import javax.persistence.Cacheable; -import javax.persistence.Column; -import javax.persistence.Entity; -import javax.persistence.FetchType; -import javax.persistence.Id; -import javax.persistence.JoinColumn; -import javax.persistence.Lob; -import javax.persistence.ManyToOne; -import javax.persistence.Table; - +import jakarta.persistence.Cacheable; +import jakarta.persistence.Column; +import jakarta.persistence.Entity; +import jakarta.persistence.FetchType; +import jakarta.persistence.Id; +import jakarta.persistence.JoinColumn; +import jakarta.persistence.Lob; +import jakarta.persistence.ManyToOne; +import jakarta.persistence.Table; + +import org.hibernate.Length; import org.hibernate.annotations.CacheConcurrencyStrategy; -import org.hibernate.annotations.Type; /*** * Contains all the metadata associated with an item that need to be created or @@ -50,8 +50,7 @@ public class ImpMetadatavalue { private String impQualifier; @Lob - @Column(name = "imp_value") - @Type(type = "org.dspace.storage.rdbms.hibernate.DatabaseAwareLobType") + @Column(name = "imp_value", length = Length.LONG32) private String impValue; @Column(name = "imp_authority", length = 256) diff --git a/dspace-api/src/main/java/org/dspace/batch/ImpRecord.java b/dspace-api/src/main/java/org/dspace/batch/ImpRecord.java index b295db26730d..a4a9d3bd3837 100644 --- a/dspace-api/src/main/java/org/dspace/batch/ImpRecord.java +++ b/dspace-api/src/main/java/org/dspace/batch/ImpRecord.java @@ -11,14 +11,15 @@ import java.util.HashSet; import java.util.Set; import java.util.UUID; -import javax.persistence.Cacheable; -import javax.persistence.Column; -import javax.persistence.Entity; -import javax.persistence.Id; -import javax.persistence.ManyToMany; -import javax.persistence.Table; -import javax.persistence.Temporal; -import javax.persistence.TemporalType; + +import jakarta.persistence.Cacheable; +import jakarta.persistence.Column; +import jakarta.persistence.Entity; +import jakarta.persistence.Id; +import jakarta.persistence.ManyToMany; +import jakarta.persistence.Table; +import jakarta.persistence.Temporal; +import jakarta.persistence.TemporalType; import org.hibernate.annotations.CacheConcurrencyStrategy; diff --git a/dspace-api/src/main/java/org/dspace/batch/ImpWorkflowNState.java b/dspace-api/src/main/java/org/dspace/batch/ImpWorkflowNState.java index 527b9d6346df..4939f7ca8e42 100644 --- a/dspace-api/src/main/java/org/dspace/batch/ImpWorkflowNState.java +++ b/dspace-api/src/main/java/org/dspace/batch/ImpWorkflowNState.java @@ -10,15 +10,16 @@ import java.util.HashSet; import java.util.Set; import java.util.UUID; -import javax.persistence.Cacheable; -import javax.persistence.CascadeType; -import javax.persistence.Column; -import javax.persistence.Entity; -import javax.persistence.Id; -import javax.persistence.JoinColumn; -import javax.persistence.JoinTable; -import javax.persistence.ManyToMany; -import javax.persistence.Table; + +import jakarta.persistence.Cacheable; +import jakarta.persistence.CascadeType; +import jakarta.persistence.Column; +import jakarta.persistence.Entity; +import jakarta.persistence.Id; +import jakarta.persistence.JoinColumn; +import jakarta.persistence.JoinTable; +import jakarta.persistence.ManyToMany; +import jakarta.persistence.Table; import org.hibernate.annotations.CacheConcurrencyStrategy; diff --git a/dspace-api/src/main/java/org/dspace/batch/dao/impl/ImpBitstreamDAOImpl.java b/dspace-api/src/main/java/org/dspace/batch/dao/impl/ImpBitstreamDAOImpl.java index 208dbb4efc57..844f866b30ce 100644 --- a/dspace-api/src/main/java/org/dspace/batch/dao/impl/ImpBitstreamDAOImpl.java +++ b/dspace-api/src/main/java/org/dspace/batch/dao/impl/ImpBitstreamDAOImpl.java @@ -9,8 +9,8 @@ import java.sql.SQLException; import java.util.List; -import javax.persistence.Query; +import jakarta.persistence.Query; import org.dspace.batch.ImpBitstream; import org.dspace.batch.ImpRecord; import org.dspace.batch.dao.ImpBitstreamDAO; diff --git a/dspace-api/src/main/java/org/dspace/batch/dao/impl/ImpBitstreamMetadatavalueDAOImpl.java b/dspace-api/src/main/java/org/dspace/batch/dao/impl/ImpBitstreamMetadatavalueDAOImpl.java index f204da27297b..8b2a996ab76f 100644 --- a/dspace-api/src/main/java/org/dspace/batch/dao/impl/ImpBitstreamMetadatavalueDAOImpl.java +++ b/dspace-api/src/main/java/org/dspace/batch/dao/impl/ImpBitstreamMetadatavalueDAOImpl.java @@ -9,8 +9,8 @@ import java.sql.SQLException; import java.util.List; -import javax.persistence.Query; +import jakarta.persistence.Query; import org.dspace.batch.ImpBitstream; import org.dspace.batch.ImpBitstreamMetadatavalue; import org.dspace.batch.dao.ImpBitstreamMetadatavalueDAO; diff --git a/dspace-api/src/main/java/org/dspace/batch/dao/impl/ImpMetadatavalueDAOImpl.java b/dspace-api/src/main/java/org/dspace/batch/dao/impl/ImpMetadatavalueDAOImpl.java index bae2ab70d122..5f6307330a96 100644 --- a/dspace-api/src/main/java/org/dspace/batch/dao/impl/ImpMetadatavalueDAOImpl.java +++ b/dspace-api/src/main/java/org/dspace/batch/dao/impl/ImpMetadatavalueDAOImpl.java @@ -9,8 +9,8 @@ import java.sql.SQLException; import java.util.List; -import javax.persistence.Query; +import jakarta.persistence.Query; import org.dspace.batch.ImpMetadatavalue; import org.dspace.batch.ImpRecord; import org.dspace.batch.dao.ImpMetadatavalueDAO; diff --git a/dspace-api/src/main/java/org/dspace/batch/dao/impl/ImpRecordDAOImpl.java b/dspace-api/src/main/java/org/dspace/batch/dao/impl/ImpRecordDAOImpl.java index ffd5deb47a65..af9df75ef925 100644 --- a/dspace-api/src/main/java/org/dspace/batch/dao/impl/ImpRecordDAOImpl.java +++ b/dspace-api/src/main/java/org/dspace/batch/dao/impl/ImpRecordDAOImpl.java @@ -9,8 +9,8 @@ import java.sql.SQLException; import java.util.List; -import javax.persistence.Query; +import jakarta.persistence.Query; import org.dspace.batch.ImpRecord; import org.dspace.batch.dao.ImpRecordDAO; import org.dspace.core.AbstractHibernateDAO; diff --git a/dspace-api/src/main/java/org/dspace/batch/dao/impl/ImpWorkflowNStateDAOImpl.java b/dspace-api/src/main/java/org/dspace/batch/dao/impl/ImpWorkflowNStateDAOImpl.java index 109c9d6ed805..45c0a1e3ec11 100644 --- a/dspace-api/src/main/java/org/dspace/batch/dao/impl/ImpWorkflowNStateDAOImpl.java +++ b/dspace-api/src/main/java/org/dspace/batch/dao/impl/ImpWorkflowNStateDAOImpl.java @@ -9,8 +9,8 @@ import java.sql.SQLException; import java.util.List; -import javax.persistence.Query; +import jakarta.persistence.Query; import org.dspace.batch.ImpRecord; import org.dspace.batch.ImpWorkflowNState; import org.dspace.batch.dao.ImpWorkflowNStateDAO; diff --git a/dspace-api/src/main/java/org/dspace/content/edit/service/impl/EditItemModeServiceImpl.java b/dspace-api/src/main/java/org/dspace/content/edit/service/impl/EditItemModeServiceImpl.java index 8d8397442cf5..389c6adc1038 100644 --- a/dspace-api/src/main/java/org/dspace/content/edit/service/impl/EditItemModeServiceImpl.java +++ b/dspace-api/src/main/java/org/dspace/content/edit/service/impl/EditItemModeServiceImpl.java @@ -14,8 +14,8 @@ import java.util.Map; import java.util.UUID; import java.util.stream.Collectors; -import javax.annotation.PostConstruct; +import jakarta.annotation.PostConstruct; import org.dspace.app.util.SubmissionConfigReader; import org.dspace.app.util.SubmissionConfigReaderException; import org.dspace.content.Item; diff --git a/dspace-api/src/main/java/org/dspace/content/edit/service/impl/EditItemServiceImpl.java b/dspace-api/src/main/java/org/dspace/content/edit/service/impl/EditItemServiceImpl.java index 68cdc0e94aeb..9aa8b5f6a9e0 100644 --- a/dspace-api/src/main/java/org/dspace/content/edit/service/impl/EditItemServiceImpl.java +++ b/dspace-api/src/main/java/org/dspace/content/edit/service/impl/EditItemServiceImpl.java @@ -15,8 +15,8 @@ import java.util.stream.Collectors; import java.util.stream.Stream; import java.util.stream.StreamSupport; -import javax.ws.rs.NotFoundException; +import jakarta.ws.rs.NotFoundException; import org.dspace.app.util.DCInputsReaderException; import org.dspace.authorize.AuthorizeException; import org.dspace.content.Collection; @@ -132,7 +132,7 @@ public List findBySubmitter(Context context, EPerson ep, int pageSize, */ @Override public int countBySubmitter(Context context, EPerson ep) throws SQLException { - return itemDAO.countItems(context, ep, true, false); + return itemDAO.countItems(context, ep, true, false, true); } /* (non-Javadoc) diff --git a/dspace-api/src/main/java/org/dspace/content/integration/crosswalks/METSStreamDisseminationCrosswalk.java b/dspace-api/src/main/java/org/dspace/content/integration/crosswalks/METSStreamDisseminationCrosswalk.java index 292a1e14f946..648168093a26 100644 --- a/dspace-api/src/main/java/org/dspace/content/integration/crosswalks/METSStreamDisseminationCrosswalk.java +++ b/dspace-api/src/main/java/org/dspace/content/integration/crosswalks/METSStreamDisseminationCrosswalk.java @@ -10,8 +10,8 @@ import java.io.IOException; import java.io.OutputStream; import java.sql.SQLException; -import javax.annotation.PostConstruct; +import jakarta.annotation.PostConstruct; import org.dspace.authorize.AuthorizeException; import org.dspace.content.DSpaceObject; import org.dspace.content.crosswalk.CrosswalkException; diff --git a/dspace-api/src/main/java/org/dspace/content/integration/crosswalks/ReferCrosswalk.java b/dspace-api/src/main/java/org/dspace/content/integration/crosswalks/ReferCrosswalk.java index 579fa79b4d71..3bbfebd3c362 100644 --- a/dspace-api/src/main/java/org/dspace/content/integration/crosswalks/ReferCrosswalk.java +++ b/dspace-api/src/main/java/org/dspace/content/integration/crosswalks/ReferCrosswalk.java @@ -35,8 +35,8 @@ import java.util.regex.Matcher; import java.util.regex.Pattern; import java.util.stream.Collectors; -import javax.annotation.PostConstruct; +import jakarta.annotation.PostConstruct; import org.apache.commons.collections4.CollectionUtils; import org.apache.commons.lang3.StringUtils; import org.apache.logging.log4j.LogManager; diff --git a/dspace-api/src/main/java/org/dspace/content/integration/crosswalks/TabularCrosswalk.java b/dspace-api/src/main/java/org/dspace/content/integration/crosswalks/TabularCrosswalk.java index cdfe39260a19..eeed6e7bd6e8 100644 --- a/dspace-api/src/main/java/org/dspace/content/integration/crosswalks/TabularCrosswalk.java +++ b/dspace-api/src/main/java/org/dspace/content/integration/crosswalks/TabularCrosswalk.java @@ -24,8 +24,8 @@ import java.util.Objects; import java.util.Optional; import java.util.stream.Collectors; -import javax.annotation.PostConstruct; +import jakarta.annotation.PostConstruct; import org.apache.commons.collections4.CollectionUtils; import org.apache.commons.lang3.StringUtils; import org.apache.logging.log4j.LogManager; diff --git a/dspace-api/src/main/java/org/dspace/content/security/MetadataSecurityServiceImpl.java b/dspace-api/src/main/java/org/dspace/content/security/MetadataSecurityServiceImpl.java index 603ddb228f25..7bf255f7d5e7 100644 --- a/dspace-api/src/main/java/org/dspace/content/security/MetadataSecurityServiceImpl.java +++ b/dspace-api/src/main/java/org/dspace/content/security/MetadataSecurityServiceImpl.java @@ -17,9 +17,9 @@ import java.util.Optional; import java.util.Set; import java.util.stream.Collectors; -import javax.annotation.PostConstruct; -import javax.annotation.Resource; +import jakarta.annotation.PostConstruct; +import jakarta.annotation.Resource; import org.apache.commons.collections4.CollectionUtils; import org.dspace.app.util.DCInputSet; import org.dspace.app.util.DCInputsReader; diff --git a/dspace-api/src/main/java/org/dspace/deduplication/Deduplication.java b/dspace-api/src/main/java/org/dspace/deduplication/Deduplication.java index 3e31544cd7de..a116455af03e 100644 --- a/dspace-api/src/main/java/org/dspace/deduplication/Deduplication.java +++ b/dspace-api/src/main/java/org/dspace/deduplication/Deduplication.java @@ -9,17 +9,17 @@ import java.util.Date; import java.util.UUID; -import javax.persistence.Cacheable; -import javax.persistence.Column; -import javax.persistence.Entity; -import javax.persistence.GeneratedValue; -import javax.persistence.GenerationType; -import javax.persistence.Id; -import javax.persistence.SequenceGenerator; -import javax.persistence.Table; -import javax.persistence.Temporal; -import javax.persistence.TemporalType; +import jakarta.persistence.Cacheable; +import jakarta.persistence.Column; +import jakarta.persistence.Entity; +import jakarta.persistence.GeneratedValue; +import jakarta.persistence.GenerationType; +import jakarta.persistence.Id; +import jakarta.persistence.SequenceGenerator; +import jakarta.persistence.Table; +import jakarta.persistence.Temporal; +import jakarta.persistence.TemporalType; import org.hibernate.annotations.CacheConcurrencyStrategy; /** diff --git a/dspace-api/src/main/java/org/dspace/deduplication/dao/impl/DeduplicationDAOImpl.java b/dspace-api/src/main/java/org/dspace/deduplication/dao/impl/DeduplicationDAOImpl.java index b26a0b74c77b..aae64bf6de56 100644 --- a/dspace-api/src/main/java/org/dspace/deduplication/dao/impl/DeduplicationDAOImpl.java +++ b/dspace-api/src/main/java/org/dspace/deduplication/dao/impl/DeduplicationDAOImpl.java @@ -10,8 +10,8 @@ import java.sql.SQLException; import java.util.List; import java.util.UUID; -import javax.persistence.Query; +import jakarta.persistence.Query; import org.dspace.core.AbstractHibernateDAO; import org.dspace.core.Context; import org.dspace.deduplication.Deduplication; diff --git a/dspace-api/src/main/java/org/dspace/eperson/RegistrationDataMetadata.java b/dspace-api/src/main/java/org/dspace/eperson/RegistrationDataMetadata.java index dde8428fe1fe..0c272afa0898 100644 --- a/dspace-api/src/main/java/org/dspace/eperson/RegistrationDataMetadata.java +++ b/dspace-api/src/main/java/org/dspace/eperson/RegistrationDataMetadata.java @@ -7,20 +7,20 @@ */ package org.dspace.eperson; -import javax.persistence.Column; -import javax.persistence.Entity; -import javax.persistence.FetchType; -import javax.persistence.GeneratedValue; -import javax.persistence.GenerationType; -import javax.persistence.Id; -import javax.persistence.JoinColumn; -import javax.persistence.Lob; -import javax.persistence.ManyToOne; -import javax.persistence.SequenceGenerator; -import javax.persistence.Table; - +import jakarta.persistence.Column; +import jakarta.persistence.Entity; +import jakarta.persistence.FetchType; +import jakarta.persistence.GeneratedValue; +import jakarta.persistence.GenerationType; +import jakarta.persistence.Id; +import jakarta.persistence.JoinColumn; +import jakarta.persistence.Lob; +import jakarta.persistence.ManyToOne; +import jakarta.persistence.SequenceGenerator; +import jakarta.persistence.Table; import org.dspace.content.MetadataField; import org.dspace.core.ReloadableEntity; +import org.hibernate.Length; import org.hibernate.annotations.Type; /** @@ -60,9 +60,7 @@ public class RegistrationDataMetadata implements ReloadableEntity, Comp * Value represented by this {@link RegistrationDataMetadata} instance * related to the metadataField {@link MetadataField} */ - @Lob - @Type(type = "org.dspace.storage.rdbms.hibernate.DatabaseAwareLobType") - @Column(name = "text_value") + @Column(name = "text_value", length = Length.LONG32) private String value = null; /** diff --git a/dspace-api/src/main/java/org/dspace/eperson/SubscribeCLITool.java b/dspace-api/src/main/java/org/dspace/eperson/SubscribeCLITool.java index dd0bd8287bd3..0ac9af5a3681 100644 --- a/dspace-api/src/main/java/org/dspace/eperson/SubscribeCLITool.java +++ b/dspace-api/src/main/java/org/dspace/eperson/SubscribeCLITool.java @@ -18,8 +18,8 @@ import java.util.Locale; import java.util.ResourceBundle; import java.util.TimeZone; -import javax.mail.MessagingException; +import jakarta.mail.MessagingException; import org.apache.commons.cli.CommandLine; import org.apache.commons.cli.DefaultParser; import org.apache.commons.cli.HelpFormatter; diff --git a/dspace-api/src/main/java/org/dspace/harvest/OAIHarvesterEmailSenderImpl.java b/dspace-api/src/main/java/org/dspace/harvest/OAIHarvesterEmailSenderImpl.java index 604865acb96b..98eade284586 100644 --- a/dspace-api/src/main/java/org/dspace/harvest/OAIHarvesterEmailSenderImpl.java +++ b/dspace-api/src/main/java/org/dspace/harvest/OAIHarvesterEmailSenderImpl.java @@ -13,8 +13,8 @@ import java.util.List; import java.util.Locale; import java.util.stream.Collectors; -import javax.mail.MessagingException; +import jakarta.mail.MessagingException; import org.apache.commons.lang3.StringUtils; import org.apache.commons.lang3.exception.ExceptionUtils; import org.apache.logging.log4j.LogManager; diff --git a/dspace-api/src/main/java/org/dspace/identifier/DOIIdentifierProvider.java b/dspace-api/src/main/java/org/dspace/identifier/DOIIdentifierProvider.java index 37d410f09db1..7ed4e8805e70 100644 --- a/dspace-api/src/main/java/org/dspace/identifier/DOIIdentifierProvider.java +++ b/dspace-api/src/main/java/org/dspace/identifier/DOIIdentifierProvider.java @@ -14,8 +14,8 @@ import java.util.List; import java.util.Objects; import java.util.Set; -import javax.annotation.PostConstruct; +import jakarta.annotation.PostConstruct; import org.apache.logging.log4j.LogManager; import org.apache.logging.log4j.Logger; import org.dspace.authorize.AuthorizeException; diff --git a/dspace-api/src/main/java/org/dspace/importer/external/openaire/metadatamapping/OpenAIREProjectFieldMapping.java b/dspace-api/src/main/java/org/dspace/importer/external/openaire/metadatamapping/OpenAIREProjectFieldMapping.java index 1b5bd61accb9..76289a6c74f4 100644 --- a/dspace-api/src/main/java/org/dspace/importer/external/openaire/metadatamapping/OpenAIREProjectFieldMapping.java +++ b/dspace-api/src/main/java/org/dspace/importer/external/openaire/metadatamapping/OpenAIREProjectFieldMapping.java @@ -8,8 +8,8 @@ package org.dspace.importer.external.openaire.metadatamapping; import java.util.Map; -import javax.annotation.Resource; +import jakarta.annotation.Resource; import org.dspace.importer.external.metadatamapping.AbstractMetadataFieldMapping; /** diff --git a/dspace-api/src/main/java/org/dspace/importer/external/openaire/service/metadatamapping/OpenAireFieldMapping.java b/dspace-api/src/main/java/org/dspace/importer/external/openaire/service/metadatamapping/OpenAireFieldMapping.java index 77bfff763195..0c399d14240e 100644 --- a/dspace-api/src/main/java/org/dspace/importer/external/openaire/service/metadatamapping/OpenAireFieldMapping.java +++ b/dspace-api/src/main/java/org/dspace/importer/external/openaire/service/metadatamapping/OpenAireFieldMapping.java @@ -8,8 +8,8 @@ package org.dspace.importer.external.openaire.service.metadatamapping; import java.util.Map; -import javax.annotation.Resource; +import jakarta.annotation.Resource; import org.dspace.importer.external.metadatamapping.AbstractMetadataFieldMapping; import org.dspace.importer.external.metadatamapping.MetadataFieldConfig; import org.dspace.importer.external.metadatamapping.contributor.MetadataContributor; diff --git a/dspace-api/src/main/java/org/dspace/importer/external/vufind/callable/CountByQueryCallable.java b/dspace-api/src/main/java/org/dspace/importer/external/vufind/callable/CountByQueryCallable.java index 658fdc924cf1..94f7c3795180 100644 --- a/dspace-api/src/main/java/org/dspace/importer/external/vufind/callable/CountByQueryCallable.java +++ b/dspace-api/src/main/java/org/dspace/importer/external/vufind/callable/CountByQueryCallable.java @@ -8,10 +8,10 @@ package org.dspace.importer.external.vufind.callable; import java.util.concurrent.Callable; -import javax.ws.rs.client.Invocation; -import javax.ws.rs.client.WebTarget; -import javax.ws.rs.core.Response; +import jakarta.ws.rs.client.Invocation; +import jakarta.ws.rs.client.WebTarget; +import jakarta.ws.rs.core.Response; import com.jayway.jsonpath.JsonPath; import com.jayway.jsonpath.ReadContext; import org.dspace.importer.external.datamodel.Query; diff --git a/dspace-api/src/main/java/org/dspace/importer/external/vufind/callable/FindMatchingRecordsCallable.java b/dspace-api/src/main/java/org/dspace/importer/external/vufind/callable/FindMatchingRecordsCallable.java index 89e0d7f582b3..72a457c52a90 100644 --- a/dspace-api/src/main/java/org/dspace/importer/external/vufind/callable/FindMatchingRecordsCallable.java +++ b/dspace-api/src/main/java/org/dspace/importer/external/vufind/callable/FindMatchingRecordsCallable.java @@ -8,10 +8,10 @@ package org.dspace.importer.external.vufind.callable; import java.util.concurrent.Callable; -import javax.ws.rs.client.Invocation; -import javax.ws.rs.client.WebTarget; -import javax.ws.rs.core.Response; +import jakarta.ws.rs.client.Invocation; +import jakarta.ws.rs.client.WebTarget; +import jakarta.ws.rs.core.Response; import org.apache.http.HttpException; import org.dspace.importer.external.datamodel.Query; diff --git a/dspace-api/src/main/java/org/dspace/importer/external/vufind/callable/GetByVuFindIdCallable.java b/dspace-api/src/main/java/org/dspace/importer/external/vufind/callable/GetByVuFindIdCallable.java index e22672234d3d..000c437b74a5 100644 --- a/dspace-api/src/main/java/org/dspace/importer/external/vufind/callable/GetByVuFindIdCallable.java +++ b/dspace-api/src/main/java/org/dspace/importer/external/vufind/callable/GetByVuFindIdCallable.java @@ -8,9 +8,10 @@ package org.dspace.importer.external.vufind.callable; import java.util.concurrent.Callable; -import javax.ws.rs.client.Invocation; -import javax.ws.rs.client.WebTarget; -import javax.ws.rs.core.Response; + +import jakarta.ws.rs.client.Invocation; +import jakarta.ws.rs.client.WebTarget; +import jakarta.ws.rs.core.Response; import org.apache.http.HttpException; diff --git a/dspace-api/src/main/java/org/dspace/importer/external/vufind/callable/SearchByQueryCallable.java b/dspace-api/src/main/java/org/dspace/importer/external/vufind/callable/SearchByQueryCallable.java index 9ba8a897a616..055add59ea83 100644 --- a/dspace-api/src/main/java/org/dspace/importer/external/vufind/callable/SearchByQueryCallable.java +++ b/dspace-api/src/main/java/org/dspace/importer/external/vufind/callable/SearchByQueryCallable.java @@ -8,9 +8,10 @@ package org.dspace.importer.external.vufind.callable; import java.util.concurrent.Callable; -import javax.ws.rs.client.Invocation; -import javax.ws.rs.client.WebTarget; -import javax.ws.rs.core.Response; + +import jakarta.ws.rs.client.Invocation; +import jakarta.ws.rs.client.WebTarget; +import jakarta.ws.rs.core.Response; import org.apache.http.HttpException; import org.dspace.importer.external.datamodel.Query; diff --git a/dspace-api/src/main/java/org/dspace/layout/CrisLayoutBox.java b/dspace-api/src/main/java/org/dspace/layout/CrisLayoutBox.java index 9fb9a725c5b7..bc8c08e9ca98 100644 --- a/dspace-api/src/main/java/org/dspace/layout/CrisLayoutBox.java +++ b/dspace-api/src/main/java/org/dspace/layout/CrisLayoutBox.java @@ -12,23 +12,23 @@ import java.util.List; import java.util.Set; import java.util.stream.Collectors; -import javax.persistence.Cacheable; -import javax.persistence.CascadeType; -import javax.persistence.Column; -import javax.persistence.Entity; -import javax.persistence.FetchType; -import javax.persistence.GeneratedValue; -import javax.persistence.GenerationType; -import javax.persistence.Id; -import javax.persistence.JoinColumn; -import javax.persistence.JoinTable; -import javax.persistence.ManyToMany; -import javax.persistence.ManyToOne; -import javax.persistence.OneToMany; -import javax.persistence.OrderBy; -import javax.persistence.SequenceGenerator; -import javax.persistence.Table; +import jakarta.persistence.Cacheable; +import jakarta.persistence.CascadeType; +import jakarta.persistence.Column; +import jakarta.persistence.Entity; +import jakarta.persistence.FetchType; +import jakarta.persistence.GeneratedValue; +import jakarta.persistence.GenerationType; +import jakarta.persistence.Id; +import jakarta.persistence.JoinColumn; +import jakarta.persistence.JoinTable; +import jakarta.persistence.ManyToMany; +import jakarta.persistence.ManyToOne; +import jakarta.persistence.OneToMany; +import jakarta.persistence.OrderBy; +import jakarta.persistence.SequenceGenerator; +import jakarta.persistence.Table; import org.dspace.content.EntityType; import org.dspace.content.MetadataField; import org.dspace.core.ReloadableEntity; diff --git a/dspace-api/src/main/java/org/dspace/layout/CrisLayoutBox2Field.java b/dspace-api/src/main/java/org/dspace/layout/CrisLayoutBox2Field.java index 22b955fd622c..952ef9142f61 100644 --- a/dspace-api/src/main/java/org/dspace/layout/CrisLayoutBox2Field.java +++ b/dspace-api/src/main/java/org/dspace/layout/CrisLayoutBox2Field.java @@ -7,16 +7,16 @@ */ package org.dspace.layout; -import javax.persistence.Cacheable; -import javax.persistence.CascadeType; -import javax.persistence.Column; -import javax.persistence.EmbeddedId; -import javax.persistence.Entity; -import javax.persistence.FetchType; -import javax.persistence.JoinColumn; -import javax.persistence.ManyToOne; -import javax.persistence.MapsId; -import javax.persistence.Table; +import jakarta.persistence.Cacheable; +import jakarta.persistence.CascadeType; +import jakarta.persistence.Column; +import jakarta.persistence.EmbeddedId; +import jakarta.persistence.Entity; +import jakarta.persistence.FetchType; +import jakarta.persistence.JoinColumn; +import jakarta.persistence.ManyToOne; +import jakarta.persistence.MapsId; +import jakarta.persistence.Table; import org.hibernate.annotations.CacheConcurrencyStrategy; diff --git a/dspace-api/src/main/java/org/dspace/layout/CrisLayoutBox2FieldId.java b/dspace-api/src/main/java/org/dspace/layout/CrisLayoutBox2FieldId.java index 051c33014276..f13dec2758e3 100644 --- a/dspace-api/src/main/java/org/dspace/layout/CrisLayoutBox2FieldId.java +++ b/dspace-api/src/main/java/org/dspace/layout/CrisLayoutBox2FieldId.java @@ -8,8 +8,9 @@ package org.dspace.layout; import java.io.Serializable; -import javax.persistence.Column; -import javax.persistence.Embeddable; + +import jakarta.persistence.Column; +import jakarta.persistence.Embeddable; /** * This class defines the Id for the relation beetwen the objects CrisLayoutBox and CrisLayoutBox diff --git a/dspace-api/src/main/java/org/dspace/layout/CrisLayoutBox2SecurityGroup.java b/dspace-api/src/main/java/org/dspace/layout/CrisLayoutBox2SecurityGroup.java index d0ee1cd58415..81a8569cc9dd 100644 --- a/dspace-api/src/main/java/org/dspace/layout/CrisLayoutBox2SecurityGroup.java +++ b/dspace-api/src/main/java/org/dspace/layout/CrisLayoutBox2SecurityGroup.java @@ -8,16 +8,16 @@ package org.dspace.layout; import java.io.Serializable; -import javax.persistence.CascadeType; -import javax.persistence.Embeddable; -import javax.persistence.EmbeddedId; -import javax.persistence.Entity; -import javax.persistence.FetchType; -import javax.persistence.JoinColumn; -import javax.persistence.ManyToOne; -import javax.persistence.MapsId; -import javax.persistence.Table; +import jakarta.persistence.CascadeType; +import jakarta.persistence.Embeddable; +import jakarta.persistence.EmbeddedId; +import jakarta.persistence.Entity; +import jakarta.persistence.FetchType; +import jakarta.persistence.JoinColumn; +import jakarta.persistence.ManyToOne; +import jakarta.persistence.MapsId; +import jakarta.persistence.Table; import org.dspace.eperson.Group; @Entity diff --git a/dspace-api/src/main/java/org/dspace/layout/CrisLayoutCell.java b/dspace-api/src/main/java/org/dspace/layout/CrisLayoutCell.java index 1bc936597e19..44577ea4f6ea 100644 --- a/dspace-api/src/main/java/org/dspace/layout/CrisLayoutCell.java +++ b/dspace-api/src/main/java/org/dspace/layout/CrisLayoutCell.java @@ -9,20 +9,20 @@ import java.util.ArrayList; import java.util.List; -import javax.persistence.CascadeType; -import javax.persistence.Column; -import javax.persistence.Entity; -import javax.persistence.FetchType; -import javax.persistence.GeneratedValue; -import javax.persistence.GenerationType; -import javax.persistence.Id; -import javax.persistence.JoinColumn; -import javax.persistence.ManyToOne; -import javax.persistence.OneToMany; -import javax.persistence.OrderColumn; -import javax.persistence.SequenceGenerator; -import javax.persistence.Table; +import jakarta.persistence.CascadeType; +import jakarta.persistence.Column; +import jakarta.persistence.Entity; +import jakarta.persistence.FetchType; +import jakarta.persistence.GeneratedValue; +import jakarta.persistence.GenerationType; +import jakarta.persistence.Id; +import jakarta.persistence.JoinColumn; +import jakarta.persistence.ManyToOne; +import jakarta.persistence.OneToMany; +import jakarta.persistence.OrderColumn; +import jakarta.persistence.SequenceGenerator; +import jakarta.persistence.Table; import org.dspace.core.ReloadableEntity; @Entity diff --git a/dspace-api/src/main/java/org/dspace/layout/CrisLayoutField.java b/dspace-api/src/main/java/org/dspace/layout/CrisLayoutField.java index 3e706bdccf76..c7e6950685f3 100644 --- a/dspace-api/src/main/java/org/dspace/layout/CrisLayoutField.java +++ b/dspace-api/src/main/java/org/dspace/layout/CrisLayoutField.java @@ -12,24 +12,24 @@ import java.util.ArrayList; import java.util.List; -import javax.persistence.Cacheable; -import javax.persistence.CascadeType; -import javax.persistence.Column; -import javax.persistence.DiscriminatorColumn; -import javax.persistence.Entity; -import javax.persistence.FetchType; -import javax.persistence.GeneratedValue; -import javax.persistence.GenerationType; -import javax.persistence.Id; -import javax.persistence.Inheritance; -import javax.persistence.InheritanceType; -import javax.persistence.JoinColumn; -import javax.persistence.ManyToOne; -import javax.persistence.OneToMany; -import javax.persistence.OrderBy; -import javax.persistence.SequenceGenerator; -import javax.persistence.Table; +import jakarta.persistence.Cacheable; +import jakarta.persistence.CascadeType; +import jakarta.persistence.Column; +import jakarta.persistence.DiscriminatorColumn; +import jakarta.persistence.Entity; +import jakarta.persistence.FetchType; +import jakarta.persistence.GeneratedValue; +import jakarta.persistence.GenerationType; +import jakarta.persistence.Id; +import jakarta.persistence.Inheritance; +import jakarta.persistence.InheritanceType; +import jakarta.persistence.JoinColumn; +import jakarta.persistence.ManyToOne; +import jakarta.persistence.OneToMany; +import jakarta.persistence.OrderBy; +import jakarta.persistence.SequenceGenerator; +import jakarta.persistence.Table; import org.dspace.content.MetadataField; import org.dspace.core.ReloadableEntity; import org.hibernate.annotations.CacheConcurrencyStrategy; diff --git a/dspace-api/src/main/java/org/dspace/layout/CrisLayoutFieldBitstream.java b/dspace-api/src/main/java/org/dspace/layout/CrisLayoutFieldBitstream.java index 008c1fcfae03..1d72ed594041 100644 --- a/dspace-api/src/main/java/org/dspace/layout/CrisLayoutFieldBitstream.java +++ b/dspace-api/src/main/java/org/dspace/layout/CrisLayoutFieldBitstream.java @@ -7,9 +7,9 @@ */ package org.dspace.layout; -import javax.persistence.Column; -import javax.persistence.DiscriminatorValue; -import javax.persistence.Entity; +import jakarta.persistence.Column; +import jakarta.persistence.DiscriminatorValue; +import jakarta.persistence.Entity; /** * @author Danilo Di Nuzzo (danilo.dinuzzo at 4science.it) diff --git a/dspace-api/src/main/java/org/dspace/layout/CrisLayoutFieldMetadata.java b/dspace-api/src/main/java/org/dspace/layout/CrisLayoutFieldMetadata.java index 4ca2cf9430cf..dd4c945ac445 100644 --- a/dspace-api/src/main/java/org/dspace/layout/CrisLayoutFieldMetadata.java +++ b/dspace-api/src/main/java/org/dspace/layout/CrisLayoutFieldMetadata.java @@ -7,8 +7,8 @@ */ package org.dspace.layout; -import javax.persistence.DiscriminatorValue; -import javax.persistence.Entity; +import jakarta.persistence.DiscriminatorValue; +import jakarta.persistence.Entity; /** * @author Danilo Di Nuzzo (danilo.dinuzzo at 4science.it) diff --git a/dspace-api/src/main/java/org/dspace/layout/CrisLayoutMetric2Box.java b/dspace-api/src/main/java/org/dspace/layout/CrisLayoutMetric2Box.java index d6e84c6697f0..32fbb1b58d4e 100644 --- a/dspace-api/src/main/java/org/dspace/layout/CrisLayoutMetric2Box.java +++ b/dspace-api/src/main/java/org/dspace/layout/CrisLayoutMetric2Box.java @@ -7,18 +7,17 @@ */ package org.dspace.layout; -import javax.persistence.Cacheable; -import javax.persistence.Column; -import javax.persistence.Entity; -import javax.persistence.FetchType; -import javax.persistence.GeneratedValue; -import javax.persistence.GenerationType; -import javax.persistence.Id; -import javax.persistence.JoinColumn; -import javax.persistence.ManyToOne; -import javax.persistence.SequenceGenerator; -import javax.persistence.Table; - +import jakarta.persistence.Cacheable; +import jakarta.persistence.Column; +import jakarta.persistence.Entity; +import jakarta.persistence.FetchType; +import jakarta.persistence.GeneratedValue; +import jakarta.persistence.GenerationType; +import jakarta.persistence.Id; +import jakarta.persistence.JoinColumn; +import jakarta.persistence.ManyToOne; +import jakarta.persistence.SequenceGenerator; +import jakarta.persistence.Table; import org.hibernate.annotations.CacheConcurrencyStrategy; /** diff --git a/dspace-api/src/main/java/org/dspace/layout/CrisLayoutRow.java b/dspace-api/src/main/java/org/dspace/layout/CrisLayoutRow.java index 123a4f929e08..230fd4414589 100644 --- a/dspace-api/src/main/java/org/dspace/layout/CrisLayoutRow.java +++ b/dspace-api/src/main/java/org/dspace/layout/CrisLayoutRow.java @@ -9,20 +9,20 @@ import java.util.ArrayList; import java.util.List; -import javax.persistence.CascadeType; -import javax.persistence.Column; -import javax.persistence.Entity; -import javax.persistence.FetchType; -import javax.persistence.GeneratedValue; -import javax.persistence.GenerationType; -import javax.persistence.Id; -import javax.persistence.JoinColumn; -import javax.persistence.ManyToOne; -import javax.persistence.OneToMany; -import javax.persistence.OrderColumn; -import javax.persistence.SequenceGenerator; -import javax.persistence.Table; +import jakarta.persistence.CascadeType; +import jakarta.persistence.Column; +import jakarta.persistence.Entity; +import jakarta.persistence.FetchType; +import jakarta.persistence.GeneratedValue; +import jakarta.persistence.GenerationType; +import jakarta.persistence.Id; +import jakarta.persistence.JoinColumn; +import jakarta.persistence.ManyToOne; +import jakarta.persistence.OneToMany; +import jakarta.persistence.OrderColumn; +import jakarta.persistence.SequenceGenerator; +import jakarta.persistence.Table; import org.dspace.core.ReloadableEntity; @Entity diff --git a/dspace-api/src/main/java/org/dspace/layout/CrisLayoutTab.java b/dspace-api/src/main/java/org/dspace/layout/CrisLayoutTab.java index 9c0f4ef1e2b9..de28e4eb1114 100644 --- a/dspace-api/src/main/java/org/dspace/layout/CrisLayoutTab.java +++ b/dspace-api/src/main/java/org/dspace/layout/CrisLayoutTab.java @@ -12,26 +12,26 @@ import java.util.List; import java.util.Set; import java.util.stream.Collectors; -import javax.persistence.Cacheable; -import javax.persistence.CascadeType; -import javax.persistence.Column; -import javax.persistence.Entity; -import javax.persistence.FetchType; -import javax.persistence.GeneratedValue; -import javax.persistence.GenerationType; -import javax.persistence.Id; -import javax.persistence.JoinColumn; -import javax.persistence.JoinTable; -import javax.persistence.ManyToMany; -import javax.persistence.ManyToOne; -import javax.persistence.NamedAttributeNode; -import javax.persistence.NamedEntityGraph; -import javax.persistence.NamedSubgraph; -import javax.persistence.OneToMany; -import javax.persistence.OrderColumn; -import javax.persistence.SequenceGenerator; -import javax.persistence.Table; +import jakarta.persistence.Cacheable; +import jakarta.persistence.CascadeType; +import jakarta.persistence.Column; +import jakarta.persistence.Entity; +import jakarta.persistence.FetchType; +import jakarta.persistence.GeneratedValue; +import jakarta.persistence.GenerationType; +import jakarta.persistence.Id; +import jakarta.persistence.JoinColumn; +import jakarta.persistence.JoinTable; +import jakarta.persistence.ManyToMany; +import jakarta.persistence.ManyToOne; +import jakarta.persistence.NamedAttributeNode; +import jakarta.persistence.NamedEntityGraph; +import jakarta.persistence.NamedSubgraph; +import jakarta.persistence.OneToMany; +import jakarta.persistence.OrderColumn; +import jakarta.persistence.SequenceGenerator; +import jakarta.persistence.Table; import org.dspace.content.EntityType; import org.dspace.content.MetadataField; import org.dspace.core.ReloadableEntity; diff --git a/dspace-api/src/main/java/org/dspace/layout/CrisLayoutTab2BoxId.java b/dspace-api/src/main/java/org/dspace/layout/CrisLayoutTab2BoxId.java index 24356b309068..2601b4d960de 100644 --- a/dspace-api/src/main/java/org/dspace/layout/CrisLayoutTab2BoxId.java +++ b/dspace-api/src/main/java/org/dspace/layout/CrisLayoutTab2BoxId.java @@ -8,8 +8,9 @@ package org.dspace.layout; import java.io.Serializable; -import javax.persistence.Column; -import javax.persistence.Embeddable; + +import jakarta.persistence.Column; +import jakarta.persistence.Embeddable; /** * @author Danilo Di Nuzzo (danilo.dinuzzo at 4science.it) diff --git a/dspace-api/src/main/java/org/dspace/layout/CrisLayoutTab2SecurityGroup.java b/dspace-api/src/main/java/org/dspace/layout/CrisLayoutTab2SecurityGroup.java index f41b3ec53e88..00fdf6fb7a92 100644 --- a/dspace-api/src/main/java/org/dspace/layout/CrisLayoutTab2SecurityGroup.java +++ b/dspace-api/src/main/java/org/dspace/layout/CrisLayoutTab2SecurityGroup.java @@ -8,16 +8,16 @@ package org.dspace.layout; import java.io.Serializable; -import javax.persistence.CascadeType; -import javax.persistence.Embeddable; -import javax.persistence.EmbeddedId; -import javax.persistence.Entity; -import javax.persistence.FetchType; -import javax.persistence.JoinColumn; -import javax.persistence.ManyToOne; -import javax.persistence.MapsId; -import javax.persistence.Table; +import jakarta.persistence.CascadeType; +import jakarta.persistence.Embeddable; +import jakarta.persistence.EmbeddedId; +import jakarta.persistence.Entity; +import jakarta.persistence.FetchType; +import jakarta.persistence.JoinColumn; +import jakarta.persistence.ManyToOne; +import jakarta.persistence.MapsId; +import jakarta.persistence.Table; import org.dspace.eperson.Group; @Entity diff --git a/dspace-api/src/main/java/org/dspace/layout/CrisMetadataGroup.java b/dspace-api/src/main/java/org/dspace/layout/CrisMetadataGroup.java index 2105e50d193e..e10fa0ab93ce 100644 --- a/dspace-api/src/main/java/org/dspace/layout/CrisMetadataGroup.java +++ b/dspace-api/src/main/java/org/dspace/layout/CrisMetadataGroup.java @@ -7,17 +7,16 @@ */ package org.dspace.layout; -import javax.persistence.Column; -import javax.persistence.Entity; -import javax.persistence.FetchType; -import javax.persistence.GeneratedValue; -import javax.persistence.GenerationType; -import javax.persistence.Id; -import javax.persistence.JoinColumn; -import javax.persistence.ManyToOne; -import javax.persistence.SequenceGenerator; -import javax.persistence.Table; - +import jakarta.persistence.Column; +import jakarta.persistence.Entity; +import jakarta.persistence.FetchType; +import jakarta.persistence.GeneratedValue; +import jakarta.persistence.GenerationType; +import jakarta.persistence.Id; +import jakarta.persistence.JoinColumn; +import jakarta.persistence.ManyToOne; +import jakarta.persistence.SequenceGenerator; +import jakarta.persistence.Table; import org.dspace.content.MetadataField; @Entity diff --git a/dspace-api/src/main/java/org/dspace/layout/dao/impl/CrisLayoutBoxDAOImpl.java b/dspace-api/src/main/java/org/dspace/layout/dao/impl/CrisLayoutBoxDAOImpl.java index 6c3044fa2f33..ef3bf1ad43d6 100644 --- a/dspace-api/src/main/java/org/dspace/layout/dao/impl/CrisLayoutBoxDAOImpl.java +++ b/dspace-api/src/main/java/org/dspace/layout/dao/impl/CrisLayoutBoxDAOImpl.java @@ -13,13 +13,13 @@ import java.sql.SQLException; import java.util.ArrayList; import java.util.List; -import javax.persistence.TypedQuery; -import javax.persistence.criteria.CriteriaBuilder; -import javax.persistence.criteria.CriteriaQuery; -import javax.persistence.criteria.JoinType; -import javax.persistence.criteria.Predicate; -import javax.persistence.criteria.Root; +import jakarta.persistence.TypedQuery; +import jakarta.persistence.criteria.CriteriaBuilder; +import jakarta.persistence.criteria.CriteriaQuery; +import jakarta.persistence.criteria.JoinType; +import jakarta.persistence.criteria.Predicate; +import jakarta.persistence.criteria.Root; import org.dspace.authorize.service.AuthorizeService; import org.dspace.core.AbstractHibernateDAO; import org.dspace.core.Context; diff --git a/dspace-api/src/main/java/org/dspace/layout/dao/impl/CrisLayoutFieldDAOImpl.java b/dspace-api/src/main/java/org/dspace/layout/dao/impl/CrisLayoutFieldDAOImpl.java index 3204bba69b4b..5fc799ed0260 100644 --- a/dspace-api/src/main/java/org/dspace/layout/dao/impl/CrisLayoutFieldDAOImpl.java +++ b/dspace-api/src/main/java/org/dspace/layout/dao/impl/CrisLayoutFieldDAOImpl.java @@ -9,12 +9,12 @@ import java.sql.SQLException; import java.util.List; -import javax.persistence.TypedQuery; -import javax.persistence.criteria.CriteriaBuilder; -import javax.persistence.criteria.CriteriaQuery; -import javax.persistence.criteria.ListJoin; -import javax.persistence.criteria.Root; +import jakarta.persistence.TypedQuery; +import jakarta.persistence.criteria.CriteriaBuilder; +import jakarta.persistence.criteria.CriteriaQuery; +import jakarta.persistence.criteria.ListJoin; +import jakarta.persistence.criteria.Root; import org.dspace.core.AbstractHibernateDAO; import org.dspace.core.Context; import org.dspace.layout.CrisLayoutBox; diff --git a/dspace-api/src/main/java/org/dspace/layout/dao/impl/CrisLayoutMetadataGroupDAOImpl.java b/dspace-api/src/main/java/org/dspace/layout/dao/impl/CrisLayoutMetadataGroupDAOImpl.java index 46a8f818815e..42c7050170d9 100644 --- a/dspace-api/src/main/java/org/dspace/layout/dao/impl/CrisLayoutMetadataGroupDAOImpl.java +++ b/dspace-api/src/main/java/org/dspace/layout/dao/impl/CrisLayoutMetadataGroupDAOImpl.java @@ -10,13 +10,13 @@ import java.sql.SQLException; import java.util.List; -import javax.annotation.Nullable; -import javax.persistence.TypedQuery; -import javax.persistence.criteria.CriteriaBuilder; -import javax.persistence.criteria.CriteriaQuery; -import javax.persistence.criteria.ListJoin; -import javax.persistence.criteria.Root; +import jakarta.annotation.Nullable; +import jakarta.persistence.TypedQuery; +import jakarta.persistence.criteria.CriteriaBuilder; +import jakarta.persistence.criteria.CriteriaQuery; +import jakarta.persistence.criteria.ListJoin; +import jakarta.persistence.criteria.Root; import org.dspace.core.AbstractHibernateDAO; import org.dspace.core.Context; import org.dspace.layout.CrisLayoutField; diff --git a/dspace-api/src/main/java/org/dspace/layout/dao/impl/CrisLayoutTabDAOImpl.java b/dspace-api/src/main/java/org/dspace/layout/dao/impl/CrisLayoutTabDAOImpl.java index bd898d8e1b40..f0e66492a527 100644 --- a/dspace-api/src/main/java/org/dspace/layout/dao/impl/CrisLayoutTabDAOImpl.java +++ b/dspace-api/src/main/java/org/dspace/layout/dao/impl/CrisLayoutTabDAOImpl.java @@ -12,14 +12,14 @@ import java.sql.SQLException; import java.util.ArrayList; import java.util.List; -import javax.persistence.EntityGraph; -import javax.persistence.TypedQuery; -import javax.persistence.criteria.CriteriaBuilder; -import javax.persistence.criteria.CriteriaQuery; -import javax.persistence.criteria.Join; -import javax.persistence.criteria.Predicate; -import javax.persistence.criteria.Root; +import jakarta.persistence.EntityGraph; +import jakarta.persistence.TypedQuery; +import jakarta.persistence.criteria.CriteriaBuilder; +import jakarta.persistence.criteria.CriteriaQuery; +import jakarta.persistence.criteria.Join; +import jakarta.persistence.criteria.Predicate; +import jakarta.persistence.criteria.Root; import org.apache.commons.lang3.StringUtils; import org.dspace.content.EntityType; import org.dspace.content.EntityType_; diff --git a/dspace-api/src/main/java/org/dspace/layout/script/service/impl/CrisLayoutToolValidatorImpl.java b/dspace-api/src/main/java/org/dspace/layout/script/service/impl/CrisLayoutToolValidatorImpl.java index d6d4e6be745a..57e207ec13ba 100644 --- a/dspace-api/src/main/java/org/dspace/layout/script/service/impl/CrisLayoutToolValidatorImpl.java +++ b/dspace-api/src/main/java/org/dspace/layout/script/service/impl/CrisLayoutToolValidatorImpl.java @@ -23,8 +23,8 @@ import java.util.function.Function; import java.util.function.Predicate; import java.util.stream.Collectors; -import javax.annotation.PostConstruct; +import jakarta.annotation.PostConstruct; import org.apache.commons.collections4.CollectionUtils; import org.apache.commons.lang3.ArrayUtils; import org.apache.commons.lang3.EnumUtils; diff --git a/dspace-api/src/main/java/org/dspace/layout/service/impl/CrisLayoutTabServiceImpl.java b/dspace-api/src/main/java/org/dspace/layout/service/impl/CrisLayoutTabServiceImpl.java index 980305e67d6e..b802745ba4ee 100644 --- a/dspace-api/src/main/java/org/dspace/layout/service/impl/CrisLayoutTabServiceImpl.java +++ b/dspace-api/src/main/java/org/dspace/layout/service/impl/CrisLayoutTabServiceImpl.java @@ -15,8 +15,8 @@ import java.util.Objects; import java.util.Optional; import java.util.UUID; -import javax.annotation.PostConstruct; +import jakarta.annotation.PostConstruct; import org.apache.commons.collections.CollectionUtils; import org.dspace.app.util.SubmissionConfigReader; import org.dspace.app.util.SubmissionConfigReaderException; diff --git a/dspace-api/src/main/java/org/dspace/metrics/scopus/CrisMetricDTO.java b/dspace-api/src/main/java/org/dspace/metrics/scopus/CrisMetricDTO.java index 120ab3154314..c8d57ba3f1b1 100644 --- a/dspace-api/src/main/java/org/dspace/metrics/scopus/CrisMetricDTO.java +++ b/dspace-api/src/main/java/org/dspace/metrics/scopus/CrisMetricDTO.java @@ -8,9 +8,9 @@ package org.dspace.metrics.scopus; import java.util.HashMap; import java.util.Map; -import javax.persistence.Lob; -import javax.persistence.Transient; +import jakarta.persistence.Lob; +import jakarta.persistence.Transient; import com.google.gson.Gson; /** diff --git a/dspace-api/src/main/java/org/dspace/storage/rdbms/DatabaseUtils.java b/dspace-api/src/main/java/org/dspace/storage/rdbms/DatabaseUtils.java index 5a1ee85e8e4a..1740a082c07e 100644 --- a/dspace-api/src/main/java/org/dspace/storage/rdbms/DatabaseUtils.java +++ b/dspace-api/src/main/java/org/dspace/storage/rdbms/DatabaseUtils.java @@ -692,7 +692,9 @@ protected static synchronized void updateDatabase(DataSource datasource, Connect // Set whether Flyway will run migrations "out of order". By default, this is false, // and Flyway ONLY runs migrations that have a higher version number. flywayConfiguration.outOfOrder(outOfOrder); - flywayConfiguration.ignoreMissingMigrations(missing); + if (missing) { + flywayConfiguration.ignoreMigrationPatterns("*:ignored"); + } // If a target version was specified, tell Flyway to ONLY migrate to that version // (i.e. all later migrations are left as "pending"). By default we always migrate to latest version. diff --git a/dspace-api/src/main/java/org/dspace/storage/rdbms/hibernate/DatabaseAwareLobType.java b/dspace-api/src/main/java/org/dspace/storage/rdbms/hibernate/DatabaseAwareLobType.java deleted file mode 100644 index 95939f9902aa..000000000000 --- a/dspace-api/src/main/java/org/dspace/storage/rdbms/hibernate/DatabaseAwareLobType.java +++ /dev/null @@ -1,57 +0,0 @@ -/** - * The contents of this file are subject to the license and copyright - * detailed in the LICENSE and NOTICE files at the root of the source - * tree and available online at - * - * http://www.dspace.org/license/ - */ -package org.dspace.storage.rdbms.hibernate; - -import org.apache.commons.lang.StringUtils; -import org.dspace.services.ConfigurationService; -import org.dspace.services.factory.DSpaceServicesFactory; -import org.hibernate.type.AbstractSingleColumnStandardBasicType; -import org.hibernate.type.descriptor.java.StringTypeDescriptor; -import org.hibernate.type.descriptor.sql.ClobTypeDescriptor; -import org.hibernate.type.descriptor.sql.LongVarcharTypeDescriptor; -import org.hibernate.type.descriptor.sql.SqlTypeDescriptor; - -/** - * A Hibernate @Type used to properly support the CLOB in both Postgres and Oracle. - * PostgreSQL doesn't have a CLOB type, instead it's a TEXT field. - * Normally, you'd use org.hibernate.type.TextType to support TEXT, but that won't work for Oracle. - * https://github.com/hibernate/hibernate-orm/blob/5.6/hibernate-core/src/main/java/org/hibernate/type/TextType.java - * - * This Type checks if we are using PostgreSQL. - * If so, it configures Hibernate to map CLOB to LongVarChar (same as org.hibernate.type.TextType) - * If not, it uses default CLOB (which works for other databases). - */ -public class DatabaseAwareLobType extends AbstractSingleColumnStandardBasicType { - - public static final DatabaseAwareLobType INSTANCE = new DatabaseAwareLobType(); - - public DatabaseAwareLobType() { - super( getDbDescriptor(), StringTypeDescriptor.INSTANCE ); - } - - public static SqlTypeDescriptor getDbDescriptor() { - if ( isPostgres() ) { - return LongVarcharTypeDescriptor.INSTANCE; - } else { - return ClobTypeDescriptor.DEFAULT; - } - } - - private static boolean isPostgres() { - ConfigurationService configurationService = DSpaceServicesFactory.getInstance().getConfigurationService(); - String dbDialect = configurationService.getProperty("db.dialect"); - - return StringUtils.containsIgnoreCase(dbDialect, "PostgreSQL"); - } - - @Override - public String getName() { - return "database_aware_lob"; - } -} - diff --git a/dspace-api/src/main/java/org/dspace/validation/CclicenseValidator.java b/dspace-api/src/main/java/org/dspace/validation/CclicenseValidator.java index 5244a32f4184..db8e3511284e 100644 --- a/dspace-api/src/main/java/org/dspace/validation/CclicenseValidator.java +++ b/dspace-api/src/main/java/org/dspace/validation/CclicenseValidator.java @@ -13,8 +13,8 @@ import java.sql.SQLException; import java.util.ArrayList; import java.util.List; -import javax.inject.Inject; +import jakarta.inject.Inject; import org.dspace.app.util.SubmissionStepConfig; import org.dspace.content.InProgressSubmission; import org.dspace.content.Item; diff --git a/dspace-api/src/main/java/org/dspace/validation/service/impl/ValidationServiceImpl.java b/dspace-api/src/main/java/org/dspace/validation/service/impl/ValidationServiceImpl.java index 65bd0bf19452..32ea536609a0 100644 --- a/dspace-api/src/main/java/org/dspace/validation/service/impl/ValidationServiceImpl.java +++ b/dspace-api/src/main/java/org/dspace/validation/service/impl/ValidationServiceImpl.java @@ -10,8 +10,8 @@ import java.util.ArrayList; import java.util.List; import java.util.stream.Collectors; -import javax.annotation.PostConstruct; +import jakarta.annotation.PostConstruct; import org.dspace.app.util.SubmissionConfig; import org.dspace.app.util.SubmissionConfigReader; import org.dspace.app.util.SubmissionConfigReaderException; diff --git a/dspace-api/src/main/java/org/dspace/xmlworkflow/state/actions/processingaction/CheckCorrectionAction.java b/dspace-api/src/main/java/org/dspace/xmlworkflow/state/actions/processingaction/CheckCorrectionAction.java index 898625d81811..40fa4edd392f 100644 --- a/dspace-api/src/main/java/org/dspace/xmlworkflow/state/actions/processingaction/CheckCorrectionAction.java +++ b/dspace-api/src/main/java/org/dspace/xmlworkflow/state/actions/processingaction/CheckCorrectionAction.java @@ -10,8 +10,8 @@ import java.sql.SQLException; import java.util.ArrayList; import java.util.List; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.core.Context; import org.dspace.versioning.ItemCorrectionService; import org.dspace.xmlworkflow.state.Step; diff --git a/dspace-api/src/test/java/org/dspace/app/bulkedit/BulkImportIT.java b/dspace-api/src/test/java/org/dspace/app/bulkedit/BulkImportIT.java index 601d77d8b91c..1aef4739ea41 100644 --- a/dspace-api/src/test/java/org/dspace/app/bulkedit/BulkImportIT.java +++ b/dspace-api/src/test/java/org/dspace/app/bulkedit/BulkImportIT.java @@ -2172,9 +2172,8 @@ public void testBitstreamUpdateWithAdditionalConditionSetToFalse() throws Except .withName("Original bitstream title") .build(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, eperson, null) .withDspaceObject(bitstream) - .withUser(eperson) .withName("test") .withAction(READ) .withPolicyType(TYPE_CUSTOM) diff --git a/dspace-api/src/test/java/org/dspace/app/bulkedit/MetadataImportIT.java b/dspace-api/src/test/java/org/dspace/app/bulkedit/MetadataImportIT.java index d44b91c6de7f..2e6500826d5a 100644 --- a/dspace-api/src/test/java/org/dspace/app/bulkedit/MetadataImportIT.java +++ b/dspace-api/src/test/java/org/dspace/app/bulkedit/MetadataImportIT.java @@ -15,6 +15,7 @@ import java.io.File; import java.io.FileOutputStream; import java.io.OutputStreamWriter; +import java.sql.SQLException; import java.util.List; import org.apache.commons.cli.ParseException; diff --git a/dspace-api/src/test/java/org/dspace/app/filetype/consumer/FileTypeMetadataEnhancerConsumerIT.java b/dspace-api/src/test/java/org/dspace/app/filetype/consumer/FileTypeMetadataEnhancerConsumerIT.java index 9bdc3f752065..28d050f52362 100644 --- a/dspace-api/src/test/java/org/dspace/app/filetype/consumer/FileTypeMetadataEnhancerConsumerIT.java +++ b/dspace-api/src/test/java/org/dspace/app/filetype/consumer/FileTypeMetadataEnhancerConsumerIT.java @@ -158,10 +158,9 @@ public void testWithEntityTypeDelete() .build(); ResourcePolicyBuilder - .createResourcePolicy(context) + .createResourcePolicy(context, admin, null) .withDspaceObject(bitstream) .withAction(Constants.READ) - .withUser(admin) .build(); context.restoreAuthSystemState(); diff --git a/dspace-api/src/test/java/org/dspace/authorize/relationship/RelationshipItemWritePolicyAuthorizerIT.java b/dspace-api/src/test/java/org/dspace/authorize/relationship/RelationshipItemWritePolicyAuthorizerIT.java index e03292389243..6d3ede6158ea 100644 --- a/dspace-api/src/test/java/org/dspace/authorize/relationship/RelationshipItemWritePolicyAuthorizerIT.java +++ b/dspace-api/src/test/java/org/dspace/authorize/relationship/RelationshipItemWritePolicyAuthorizerIT.java @@ -85,9 +85,8 @@ public void testWithWritePolicy() throws Exception { .withTitle("Test item") .build(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, eperson, null) .withAction(Constants.WRITE) - .withUser(eperson) .withDspaceObject(item) .build(); diff --git a/dspace-api/src/test/java/org/dspace/builder/BitstreamBuilder.java b/dspace-api/src/test/java/org/dspace/builder/BitstreamBuilder.java index dba71faee554..2e1c0ba212a6 100644 --- a/dspace-api/src/test/java/org/dspace/builder/BitstreamBuilder.java +++ b/dspace-api/src/test/java/org/dspace/builder/BitstreamBuilder.java @@ -235,12 +235,6 @@ public BitstreamBuilder withMetadata(String schema, String element, String quali return this; } - public BitstreamBuilder withMetadata(String schema, String element, String qualifier, String value, String language) - throws SQLException { - bitstreamService.addMetadata(context, bitstream, schema, element, qualifier, language, value); - return this; - } - private Bundle getOriginalBundle(Item item) throws SQLException, AuthorizeException { List bundles = itemService.getBundles(item, Constants.CONTENT_BUNDLE_NAME); Bundle targetBundle = null; diff --git a/dspace-api/src/test/java/org/dspace/content/integration/crosswalks/XlsCollectionCrosswalkIT.java b/dspace-api/src/test/java/org/dspace/content/integration/crosswalks/XlsCollectionCrosswalkIT.java index f0f2fc6c1ed3..162e48590454 100644 --- a/dspace-api/src/test/java/org/dspace/content/integration/crosswalks/XlsCollectionCrosswalkIT.java +++ b/dspace-api/src/test/java/org/dspace/content/integration/crosswalks/XlsCollectionCrosswalkIT.java @@ -67,6 +67,9 @@ import org.dspace.content.WorkspaceItem; import org.dspace.core.Constants; import org.dspace.core.CrisConstants; +import org.dspace.eperson.Group; +import org.dspace.eperson.factory.EPersonServiceFactory; +import org.dspace.eperson.service.GroupService; import org.dspace.services.ConfigurationService; import org.dspace.services.factory.DSpaceServicesFactory; import org.dspace.utils.DSpace; @@ -93,6 +96,10 @@ public class XlsCollectionCrosswalkIT extends AbstractIntegrationTestWithDatabas private Community community; + private Group anonymousGroup; + + private Group adminGroup; + private static final String BITSTREAM_URL_FORMAT = "%s/api/core/bitstreams/%s/content"; @Before @@ -108,9 +115,11 @@ public void setup() throws SQLException, AuthorizeException { .getServicesByType(BulkImportWorkbookBuilderImpl.class).get(0); configurationService = DSpaceServicesFactory.getInstance().getConfigurationService(); - + GroupService groupService = EPersonServiceFactory.getInstance().getGroupService(); context.turnOffAuthorisationSystem(); community = createCommunity(context).build(); + anonymousGroup = groupService.findByName(context, Group.ANONYMOUS); + adminGroup = groupService.findByName(context, Group.ADMIN); context.restoreAuthSystemState(); } @@ -759,7 +768,7 @@ public void testCollectionDisseminateWithBitstreamSheet() throws Exception { .withDescription("desc 2") .build(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, null, anonymousGroup) .withDspaceObject(secondBitstream) .withAction(Constants.READ) .withName("openaccess") @@ -840,7 +849,7 @@ public void testCollectionDisseminateWithBitstreamSheetOneBitstream() throws Exc .withMetadata("dc", "contributor", null, "Unknown author") .build(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, null, adminGroup) .withDspaceObject(bitstream) .withAction(Constants.READ) .withDescription("Test policy") @@ -848,27 +857,27 @@ public void testCollectionDisseminateWithBitstreamSheetOneBitstream() throws Exc .withPolicyType(ResourcePolicy.TYPE_CUSTOM) .build(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, null, adminGroup) .withDspaceObject(bitstream) .withAction(Constants.WRITE) .withName("administrator") .withPolicyType(ResourcePolicy.TYPE_CUSTOM) .build(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, null, anonymousGroup) .withDspaceObject(bitstream) .withAction(Constants.READ) .withName("openaccess") .withPolicyType(ResourcePolicy.TYPE_INHERITED) .build(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, null, anonymousGroup) .withDspaceObject(bitstream) .withAction(Constants.READ) .withPolicyType(ResourcePolicy.TYPE_CUSTOM) .build(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, null, anonymousGroup) .withDspaceObject(bitstream) .withAction(Constants.READ) .withName("embargo") @@ -876,7 +885,7 @@ public void testCollectionDisseminateWithBitstreamSheetOneBitstream() throws Exc .withPolicyType(ResourcePolicy.TYPE_CUSTOM) .build(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, null, anonymousGroup) .withDspaceObject(bitstream) .withAction(Constants.READ) .withName("lease") @@ -1012,12 +1021,12 @@ public void testCollectionDisseminateWithBitstreamSheetWithMetadataLanguages() t // add metadata dc.description[en] Bitstream bitstream = createBitstream(context, bundle, getBitstreamSample("First bitstream sample")) .withName("test.txt") - .withMetadata("dc", "description", null, "test description 1", "en") + .withMetadata("dc", "description", null, "en", "test description 1") .withMetadata("dc", "date", null, "2023-02-23") .withMetadata("dc", "contributor", null, "Unknown author") .build(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, null, adminGroup) .withDspaceObject(bitstream) .withAction(Constants.READ) .withDescription("Test policy") @@ -1025,27 +1034,27 @@ public void testCollectionDisseminateWithBitstreamSheetWithMetadataLanguages() t .withPolicyType(ResourcePolicy.TYPE_CUSTOM) .build(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, null, adminGroup) .withDspaceObject(bitstream) .withAction(Constants.WRITE) .withName("administrator") .withPolicyType(ResourcePolicy.TYPE_CUSTOM) .build(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, null, anonymousGroup) .withDspaceObject(bitstream) .withAction(Constants.READ) .withName("openaccess") .withPolicyType(ResourcePolicy.TYPE_INHERITED) .build(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, null, anonymousGroup) .withDspaceObject(bitstream) .withAction(Constants.READ) .withPolicyType(ResourcePolicy.TYPE_CUSTOM) .build(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, null, anonymousGroup) .withDspaceObject(bitstream) .withAction(Constants.READ) .withName("embargo") @@ -1053,7 +1062,7 @@ public void testCollectionDisseminateWithBitstreamSheetWithMetadataLanguages() t .withPolicyType(ResourcePolicy.TYPE_CUSTOM) .build(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, null, anonymousGroup) .withDspaceObject(bitstream) .withAction(Constants.READ) .withName("lease") diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/CrisLayoutTabMetadatasecurityRestController.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/CrisLayoutTabMetadatasecurityRestController.java index 5947acf65570..9641841c5360 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/CrisLayoutTabMetadatasecurityRestController.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/CrisLayoutTabMetadatasecurityRestController.java @@ -13,9 +13,9 @@ import java.util.Iterator; import java.util.List; import java.util.Set; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; +import jakarta.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletResponse; import org.apache.logging.log4j.LogManager; import org.apache.logging.log4j.Logger; import org.dspace.app.rest.utils.ContextUtil; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/DiscoveryExportController.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/DiscoveryExportController.java index 5efc042393c4..87e12b5a4e60 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/DiscoveryExportController.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/DiscoveryExportController.java @@ -18,10 +18,10 @@ import java.util.Objects; import java.util.stream.Collectors; import java.util.stream.Stream; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; -import javax.ws.rs.core.MediaType; +import jakarta.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletResponse; +import jakarta.ws.rs.core.MediaType; import org.apache.commons.cli.ParseException; import org.apache.commons.lang3.StringUtils; import org.dspace.app.rest.model.SearchResultsRest; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/EPersonRegistrationRestController.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/EPersonRegistrationRestController.java index 87b402df9d22..cebca18ab862 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/EPersonRegistrationRestController.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/EPersonRegistrationRestController.java @@ -9,9 +9,9 @@ import java.util.List; import java.util.UUID; -import javax.servlet.http.HttpServletRequest; -import javax.validation.constraints.NotNull; +import jakarta.servlet.http.HttpServletRequest; +import jakarta.validation.constraints.NotNull; import org.dspace.app.rest.converter.ConverterService; import org.dspace.app.rest.model.EPersonRest; import org.dspace.app.rest.model.hateoas.EPersonResource; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/OrcidWebhookRestController.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/OrcidWebhookRestController.java index faa5cd5f77e9..b981e61dfb96 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/OrcidWebhookRestController.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/OrcidWebhookRestController.java @@ -11,9 +11,9 @@ import java.util.Collections; import java.util.Iterator; import java.util.List; -import javax.annotation.PostConstruct; -import javax.servlet.http.HttpServletRequest; +import jakarta.annotation.PostConstruct; +import jakarta.servlet.http.HttpServletRequest; import org.apache.commons.codec.binary.StringUtils; import org.apache.commons.collections4.IteratorUtils; import org.dspace.app.rest.model.RestModel; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/converter/EditItemConverter.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/converter/EditItemConverter.java index 8a2135e032bb..0f06896ccff9 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/converter/EditItemConverter.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/converter/EditItemConverter.java @@ -7,9 +7,7 @@ */ package org.dspace.app.rest.converter; -import java.util.Objects; -import javax.servlet.http.HttpServletRequest; - +import jakarta.servlet.http.HttpServletRequest; import org.apache.logging.log4j.Logger; import org.dspace.app.rest.model.EditItemRest; import org.dspace.app.rest.model.ErrorRest; @@ -137,11 +135,6 @@ protected void fillFromModel(EditItem obj, EditItemRest rest, Projection project } } - rest.setCollection(collection != null ? converter.toRest(collection, projection) : null); - rest.setItem(converter.toRest(item, projection)); - if (Objects.nonNull(submitter)) { - rest.setSubmitter(converter.toRest(submitter, projection)); - } } private void addValidationErrorsToItem(EditItem obj, EditItemRest rest) { diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/converter/RegistrationDataConverter.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/converter/RegistrationDataConverter.java index 3ec5bfbf533c..1c609d677f4f 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/converter/RegistrationDataConverter.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/converter/RegistrationDataConverter.java @@ -11,8 +11,8 @@ import java.util.List; import java.util.Optional; import java.util.stream.Collectors; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.model.MetadataRest; import org.dspace.app.rest.model.RegistrationMetadataRest; import org.dspace.app.rest.model.RegistrationRest; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/converter/SubmissionFormConverter.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/converter/SubmissionFormConverter.java index 69a46350ad8a..1bc3e5d16b4e 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/converter/SubmissionFormConverter.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/converter/SubmissionFormConverter.java @@ -10,8 +10,8 @@ import java.util.ArrayList; import java.util.LinkedList; import java.util.List; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.apache.commons.collections.CollectionUtils; import org.apache.commons.lang3.StringUtils; import org.dspace.app.rest.model.ScopeEnum; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/login/impl/LoginEventFireAction.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/login/impl/LoginEventFireAction.java index 3944e7f5a6b6..bfe2147fb285 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/login/impl/LoginEventFireAction.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/login/impl/LoginEventFireAction.java @@ -7,8 +7,7 @@ */ package org.dspace.app.rest.login.impl; -import javax.servlet.http.HttpServletRequest; - +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.login.PostLoggedInAction; import org.dspace.core.Context; import org.dspace.eperson.EPerson; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/AuditEventEPersonLinkRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/AuditEventEPersonLinkRepository.java index f0425f1d3eaa..01fd73306f58 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/AuditEventEPersonLinkRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/AuditEventEPersonLinkRepository.java @@ -9,9 +9,9 @@ import java.sql.SQLException; import java.util.UUID; -import javax.annotation.Nullable; -import javax.servlet.http.HttpServletRequest; +import jakarta.annotation.Nullable; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.audit.AuditEvent; import org.dspace.app.audit.AuditService; import org.dspace.app.rest.model.AuditEventRest; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/AuditEventObjectLinkRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/AuditEventObjectLinkRepository.java index 8c842ed0e3fc..752d317110e5 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/AuditEventObjectLinkRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/AuditEventObjectLinkRepository.java @@ -9,9 +9,9 @@ import java.sql.SQLException; import java.util.UUID; -import javax.annotation.Nullable; -import javax.servlet.http.HttpServletRequest; +import jakarta.annotation.Nullable; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.audit.AuditEvent; import org.dspace.app.audit.AuditService; import org.dspace.app.rest.model.AuditEventRest; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/AuditEventSubjectLinkRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/AuditEventSubjectLinkRepository.java index c172ed6b6c0a..93d0823fe580 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/AuditEventSubjectLinkRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/AuditEventSubjectLinkRepository.java @@ -9,9 +9,9 @@ import java.sql.SQLException; import java.util.UUID; -import javax.annotation.Nullable; -import javax.servlet.http.HttpServletRequest; +import jakarta.annotation.Nullable; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.audit.AuditEvent; import org.dspace.app.audit.AuditService; import org.dspace.app.rest.model.AuditEventRest; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/CrisLayoutTabMetadataLinkRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/CrisLayoutTabMetadataLinkRepository.java index fba41d583845..1087a9834a70 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/CrisLayoutTabMetadataLinkRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/CrisLayoutTabMetadataLinkRepository.java @@ -9,9 +9,9 @@ import java.sql.SQLException; import java.util.List; -import javax.annotation.Nullable; -import javax.servlet.http.HttpServletRequest; +import jakarta.annotation.Nullable; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.model.CrisLayoutTabRest; import org.dspace.app.rest.model.MetadataFieldRest; import org.dspace.app.rest.projection.Projection; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/CrisLayoutTabRestRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/CrisLayoutTabRestRepository.java index a405e911929d..8e2a571263dd 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/CrisLayoutTabRestRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/CrisLayoutTabRestRepository.java @@ -12,9 +12,9 @@ import java.util.List; import java.util.UUID; import java.util.stream.Collectors; -import javax.servlet.http.HttpServletRequest; import com.fasterxml.jackson.databind.ObjectMapper; +import jakarta.servlet.http.HttpServletRequest; import org.apache.commons.collections.CollectionUtils; import org.dspace.app.metrics.CrisMetrics; import org.dspace.app.rest.Parameter; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/EditItemModeLinkRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/EditItemModeLinkRepository.java index c8908eda5d90..5e72b994cae6 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/EditItemModeLinkRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/EditItemModeLinkRepository.java @@ -10,9 +10,9 @@ import java.sql.SQLException; import java.util.List; import java.util.UUID; -import javax.annotation.Nullable; -import javax.servlet.http.HttpServletRequest; +import jakarta.annotation.Nullable; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.model.EditItemModeRest; import org.dspace.app.rest.model.EditItemRest; import org.dspace.app.rest.projection.Projection; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/EditItemRestRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/EditItemRestRepository.java index 4c7461a6a396..b65cb5d5ed6c 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/EditItemRestRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/EditItemRestRepository.java @@ -12,9 +12,9 @@ import java.util.Iterator; import java.util.List; import java.util.UUID; -import javax.servlet.http.HttpServletRequest; -import javax.ws.rs.NotFoundException; +import jakarta.servlet.http.HttpServletRequest; +import jakarta.ws.rs.NotFoundException; import org.apache.logging.log4j.LogManager; import org.apache.logging.log4j.Logger; import org.dspace.app.rest.Parameter; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ItemMetricsLinkRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ItemMetricsLinkRepository.java index 8a6728754150..1797ccd8fbea 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ItemMetricsLinkRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/ItemMetricsLinkRepository.java @@ -10,10 +10,10 @@ import java.util.List; import java.util.Objects; import java.util.UUID; -import javax.annotation.Nullable; -import javax.servlet.http.HttpServletRequest; -import javax.ws.rs.BadRequestException; +import jakarta.annotation.Nullable; +import jakarta.servlet.http.HttpServletRequest; +import jakarta.ws.rs.BadRequestException; import org.dspace.app.metrics.CrisMetrics; import org.dspace.app.rest.model.ItemRest; import org.dspace.app.rest.projection.Projection; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/DSpaceCsrfIgnoringRequestMatcher.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/DSpaceCsrfIgnoringRequestMatcher.java index ad53f60e54f6..50ef2f97d8c7 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/DSpaceCsrfIgnoringRequestMatcher.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/DSpaceCsrfIgnoringRequestMatcher.java @@ -7,8 +7,7 @@ */ package org.dspace.app.rest.security; -import javax.servlet.http.HttpServletRequest; - +import jakarta.servlet.http.HttpServletRequest; import org.springframework.security.web.csrf.CsrfTokenRepository; import org.springframework.security.web.util.matcher.RequestMatcher; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/OidcAuthenticationFilter.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/OidcAuthenticationFilter.java deleted file mode 100644 index 6815fb2d51c9..000000000000 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/OidcAuthenticationFilter.java +++ /dev/null @@ -1,49 +0,0 @@ -/** - * The contents of this file are subject to the license and copyright - * detailed in the LICENSE and NOTICE files at the root of the source - * tree and available online at - * - * http://www.dspace.org/license/ - */ -package org.dspace.app.rest.security; - -import static org.dspace.authenticate.OidcAuthenticationBean.OIDC_AUTH_ATTRIBUTE; - -import java.io.IOException; -import javax.servlet.FilterChain; -import javax.servlet.ServletException; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; - -import org.springframework.security.authentication.AuthenticationManager; -import org.springframework.security.core.Authentication; -import org.springframework.security.core.AuthenticationException; - -/** - * This class will filter openID Connect requests and try and authenticate them. - * - * @author Pasquale Cavallo (pasquale.cavallo at 4science dot it) - */ - -public class OidcAuthenticationFilter extends StatelessLoginFilter { - - public OidcAuthenticationFilter(String url, AuthenticationManager authenticationManager, - RestAuthenticationService restAuthenticationService) { - super(url, authenticationManager, restAuthenticationService); - } - - @Override - public Authentication attemptAuthentication(HttpServletRequest req, HttpServletResponse res) - throws AuthenticationException { - req.setAttribute(OIDC_AUTH_ATTRIBUTE, OIDC_AUTH_ATTRIBUTE); - return authenticationManager.authenticate(new DSpaceAuthentication()); - } - - @Override - protected void successfulAuthentication(HttpServletRequest req, HttpServletResponse res, FilterChain chain, - Authentication auth) throws IOException, ServletException { - restAuthenticationService.addAuthenticationDataForUser(req, res, (DSpaceAuthentication) auth, true); - chain.doFilter(req, res); - } - -} diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/OrcidAuthenticationFilter.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/OrcidAuthenticationFilter.java deleted file mode 100644 index 2464c5a8fed8..000000000000 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/OrcidAuthenticationFilter.java +++ /dev/null @@ -1,53 +0,0 @@ -/** - * The contents of this file are subject to the license and copyright - * detailed in the LICENSE and NOTICE files at the root of the source - * tree and available online at - * - * http://www.dspace.org/license/ - */ -package org.dspace.app.rest.security; - -import static org.dspace.authenticate.OrcidAuthenticationBean.ORCID_AUTH_ATTRIBUTE; - -import java.io.IOException; -import javax.servlet.FilterChain; -import javax.servlet.ServletException; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; - -import org.springframework.security.authentication.AuthenticationManager; -import org.springframework.security.core.Authentication; -import org.springframework.security.core.AuthenticationException; - -/** - * This class will filter ORCID requests and try and authenticate them. - * - * @author Luca Giamminonni (luca.giamminonni at 4science.it) - */ - -public class OrcidAuthenticationFilter extends StatelessLoginFilter { - - public OrcidAuthenticationFilter(String url, AuthenticationManager authenticationManager, - RestAuthenticationService restAuthenticationService) { - super(url, authenticationManager, restAuthenticationService); - } - - @Override - public Authentication attemptAuthentication(HttpServletRequest req, HttpServletResponse res) - throws AuthenticationException { - - req.setAttribute(ORCID_AUTH_ATTRIBUTE, ORCID_AUTH_ATTRIBUTE); - return authenticationManager.authenticate(new DSpaceAuthentication()); - - } - - @Override - protected void successfulAuthentication(HttpServletRequest req, HttpServletResponse res, FilterChain chain, - Authentication auth) throws IOException, ServletException { - - restAuthenticationService.addAuthenticationDataForUser(req, res, (DSpaceAuthentication) auth, true); - chain.doFilter(req, res); - - } - -} diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/UserAgreementFilter.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/UserAgreementFilter.java index 39f027f1189c..e959815f9fc3 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/UserAgreementFilter.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/UserAgreementFilter.java @@ -11,11 +11,11 @@ import static org.dspace.app.rest.security.jwt.UserAgreementClaimProvider.USER_AGREEMENT_ACCEPTED; import java.io.IOException; -import javax.servlet.FilterChain; -import javax.servlet.ServletException; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; +import jakarta.servlet.FilterChain; +import jakarta.servlet.ServletException; +import jakarta.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletResponse; import org.apache.commons.lang3.BooleanUtils; import org.dspace.app.rest.security.jwt.UserAgreementClaimProvider; import org.dspace.app.rest.utils.ContextUtil; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/jwt/MachineClaimProvider.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/jwt/MachineClaimProvider.java index d179daef81f6..f889e8e7cb56 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/jwt/MachineClaimProvider.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/jwt/MachineClaimProvider.java @@ -8,8 +8,8 @@ package org.dspace.app.rest.security.jwt; import java.sql.SQLException; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import com.nimbusds.jwt.JWTClaimsSet; import org.dspace.core.Context; import org.springframework.stereotype.Component; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/jwt/UserAgreementClaimProvider.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/jwt/UserAgreementClaimProvider.java index b03197264adb..8115ca18ab5f 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/jwt/UserAgreementClaimProvider.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/jwt/UserAgreementClaimProvider.java @@ -8,8 +8,8 @@ package org.dspace.app.rest.security.jwt; import java.sql.SQLException; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import com.nimbusds.jwt.JWTClaimsSet; import org.apache.commons.lang3.BooleanUtils; import org.dspace.content.Item; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/CustomUrlRemoveOperation.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/CustomUrlRemoveOperation.java index f628c5efd4dd..3770316421ae 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/CustomUrlRemoveOperation.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/CustomUrlRemoveOperation.java @@ -7,8 +7,7 @@ */ package org.dspace.app.rest.submit.factory.impl; -import javax.servlet.http.HttpServletRequest; - +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.customurl.CustomUrlService; import org.dspace.app.rest.model.step.CustomUrl; import org.dspace.content.InProgressSubmission; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/CustomUrlReplaceOperation.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/CustomUrlReplaceOperation.java index ded26c3ac3c0..7fe72599b16a 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/CustomUrlReplaceOperation.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/CustomUrlReplaceOperation.java @@ -10,8 +10,8 @@ import static org.apache.commons.lang3.StringUtils.isBlank; import java.util.Optional; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.customurl.CustomUrlService; import org.dspace.app.rest.model.step.CustomUrl; import org.dspace.content.InProgressSubmission; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/DetectDuplicateAddPatchOperation.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/DetectDuplicateAddPatchOperation.java index 819bba0c1423..7805df898848 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/DetectDuplicateAddPatchOperation.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/DetectDuplicateAddPatchOperation.java @@ -8,8 +8,8 @@ package org.dspace.app.rest.submit.factory.impl; import java.util.UUID; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.deduplication.model.DuplicateDecisionObjectRest; import org.dspace.app.deduplication.model.DuplicateDecisionType; import org.dspace.app.deduplication.utils.IDedupUtils; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/PatchOperation.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/PatchOperation.java index cf4641da9bec..f073fd355cc7 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/PatchOperation.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/PatchOperation.java @@ -51,15 +51,6 @@ public T evaluateSingleObject(LateObjectEvaluator value) { return single; } - public String getStepId(String fullpath) { - String[] path = fullpath.substring(1).split("/", 3); - String stepId = ""; - if (path.length > 1) { - stepId = path[1]; - } - return stepId; - } - public String getAbsolutePath(String fullpath) { String[] path = fullpath.substring(1).split("/", 3); String absolutePath = ""; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/RedirectedUrlAddOperation.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/RedirectedUrlAddOperation.java index 5c59ac85bdf1..40cc27fafeaf 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/RedirectedUrlAddOperation.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/RedirectedUrlAddOperation.java @@ -7,8 +7,7 @@ */ package org.dspace.app.rest.submit.factory.impl; -import javax.servlet.http.HttpServletRequest; - +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.customurl.CustomUrlService; import org.dspace.app.rest.model.step.CustomUrl; import org.dspace.content.InProgressSubmission; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/RedirectedUrlRemoveOperation.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/RedirectedUrlRemoveOperation.java index 31890544d88d..e13ae1ca7a42 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/RedirectedUrlRemoveOperation.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/RedirectedUrlRemoveOperation.java @@ -7,8 +7,7 @@ */ package org.dspace.app.rest.submit.factory.impl; -import javax.servlet.http.HttpServletRequest; - +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.customurl.CustomUrlService; import org.dspace.app.rest.model.step.CustomUrl; import org.dspace.content.InProgressSubmission; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/step/CorrectionStep.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/step/CorrectionStep.java index 527e4a5aaf64..65dc75542304 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/step/CorrectionStep.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/step/CorrectionStep.java @@ -16,8 +16,8 @@ import java.util.Optional; import java.util.Set; import java.util.stream.Collectors; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.apache.commons.collections4.CollectionUtils; import org.apache.commons.lang3.StringUtils; import org.dspace.app.rest.model.patch.Operation; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/step/CustomUrlStep.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/step/CustomUrlStep.java index 01d62868d39d..e312185016be 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/step/CustomUrlStep.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/step/CustomUrlStep.java @@ -11,8 +11,8 @@ import static org.dspace.app.rest.repository.patch.operation.PatchOperation.OPERATION_REMOVE; import java.util.Optional; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.customurl.CustomUrlService; import org.dspace.app.rest.exception.UnprocessableEntityException; import org.dspace.app.rest.model.patch.Operation; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/step/DetectPotentialDuplicateStep.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/step/DetectPotentialDuplicateStep.java index 90f72afe7f07..20e20bc1e6ee 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/step/DetectPotentialDuplicateStep.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/step/DetectPotentialDuplicateStep.java @@ -12,8 +12,8 @@ import java.util.List; import java.util.Map; import java.util.UUID; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.deduplication.model.DuplicateDecisionType; import org.dspace.app.deduplication.utils.DuplicateItemInfo; import org.dspace.app.deduplication.utils.IDedupUtils; diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/CustomUrlStepIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/CustomUrlStepIT.java index 9e26e2eb19c7..03732cdb2682 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/CustomUrlStepIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/CustomUrlStepIT.java @@ -20,8 +20,8 @@ import static org.springframework.test.web.servlet.result.MockMvcResultMatchers.status; import java.util.List; -import javax.ws.rs.core.MediaType; +import jakarta.ws.rs.core.MediaType; import org.dspace.app.rest.model.patch.AddOperation; import org.dspace.app.rest.model.patch.Operation; import org.dspace.app.rest.model.patch.RemoveOperation; diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/DefaultWorkflowIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/DefaultWorkflowIT.java index 92b0836015ab..ffa6d0ad3a24 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/DefaultWorkflowIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/DefaultWorkflowIT.java @@ -24,8 +24,8 @@ import java.sql.SQLException; import java.util.List; import java.util.concurrent.atomic.AtomicReference; -import javax.ws.rs.core.MediaType; +import jakarta.ws.rs.core.MediaType; import org.dspace.app.rest.model.MetadataValueRest; import org.dspace.app.rest.model.patch.Operation; import org.dspace.app.rest.model.patch.ReplaceOperation; diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/EPersonGroupRestControllerIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/EPersonGroupRestControllerIT.java index fd23fd21c335..6864300d9c60 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/EPersonGroupRestControllerIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/EPersonGroupRestControllerIT.java @@ -21,8 +21,8 @@ import java.util.ArrayList; import java.util.List; import java.util.UUID; -import javax.ws.rs.core.MediaType; +import jakarta.ws.rs.core.MediaType; import com.fasterxml.jackson.databind.ObjectMapper; import org.dspace.app.rest.model.RegistrationRest; import org.dspace.app.rest.test.AbstractControllerIntegrationTest; diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/EPersonRestRepositoryInviationIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/EPersonRestRepositoryInviationIT.java index 534c3b2e7e11..3c542dec9165 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/EPersonRestRepositoryInviationIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/EPersonRestRepositoryInviationIT.java @@ -25,8 +25,8 @@ import java.util.List; import java.util.UUID; import java.util.concurrent.atomic.AtomicReference; -import javax.ws.rs.core.MediaType; +import jakarta.ws.rs.core.MediaType; import com.fasterxml.jackson.databind.ObjectMapper; import org.dspace.app.rest.jackson.IgnoreJacksonWriteOnlyAccess; import org.dspace.app.rest.model.EPersonRest; diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/EditItemRestRepositoryIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/EditItemRestRepositoryIT.java index 16b2b36a0366..0a281911610e 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/EditItemRestRepositoryIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/EditItemRestRepositoryIT.java @@ -32,8 +32,8 @@ import java.util.Map; import java.util.Map.Entry; import java.util.UUID; -import javax.ws.rs.core.MediaType; +import jakarta.ws.rs.core.MediaType; import org.dspace.app.rest.model.patch.AddOperation; import org.dspace.app.rest.model.patch.Operation; import org.dspace.app.rest.model.patch.RemoveOperation; diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/ItemRestRepositoryIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/ItemRestRepositoryIT.java index ff130d54e73e..d9acb831d385 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/ItemRestRepositoryIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/ItemRestRepositoryIT.java @@ -4746,8 +4746,7 @@ public void putItemMetadataWithUserNotPartOfGroupConfigured() throws Exception { Group group = GroupBuilder.createGroup(context).build(); configurationService.setProperty("edit.metadata.allowed-group", group.getID()); // add write rights to the user - ResourcePolicyBuilder.createResourcePolicy(context) - .withUser(eperson) + ResourcePolicyBuilder.createResourcePolicy(context, eperson, null) .withAction(WRITE) .withDspaceObject(itemService.find(context, UUID.fromString(itemUuidString))) .build(); @@ -4815,8 +4814,7 @@ public void putItemMetadataWithUserPartOfGroupConfigured() throws Exception { itemRest.setUuid(itemUuidString); itemRest.setHandle(itemHandleString); // add write rights to the user - ResourcePolicyBuilder.createResourcePolicy(context) - .withUser(eperson) + ResourcePolicyBuilder.createResourcePolicy(context, eperson, null) .withAction(WRITE) .withDspaceObject(itemService.find(context, UUID.fromString(itemUuidString))) .build(); @@ -5121,8 +5119,7 @@ public void patchItemMetadataWithUserPartOfGroupConfigured() throws Exception { .withSubject("ExtraEntry") .build(); // add write permission to the user admin - ResourcePolicyBuilder.createResourcePolicy(context) - .withUser(eperson) + ResourcePolicyBuilder.createResourcePolicy(context, eperson, null) .withAction(WRITE) .withDspaceObject(itemService.find(context, item.getID())) .build(); @@ -5168,8 +5165,7 @@ public void patchItemMetadataWithUserNotPartOfGroupConfigured() throws Exception .withSubject("ExtraEntry") .build(); // add write rights to the user admin - ResourcePolicyBuilder.createResourcePolicy(context) - .withUser(eperson) + ResourcePolicyBuilder.createResourcePolicy(context, eperson, null) .withAction(WRITE) .withDspaceObject(itemService.find(context, item.getID())) .build(); diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/LayoutSecurityIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/LayoutSecurityIT.java index 503fb88149c1..e8c4c0fd0d08 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/LayoutSecurityIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/LayoutSecurityIT.java @@ -18,8 +18,8 @@ import java.util.HashSet; import java.util.List; import java.util.Set; -import javax.ws.rs.core.MediaType; +import jakarta.ws.rs.core.MediaType; import org.dspace.app.rest.model.patch.AddOperation; import org.dspace.app.rest.model.patch.MoveOperation; import org.dspace.app.rest.model.patch.Operation; @@ -819,10 +819,9 @@ public void patchAddMetadataContainedInAdministratorBoxTest() throws Exception { .withAuthor("Smith, Maria") .build(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, eperson, null) .withDspaceObject(itemA) .withAction(Constants.WRITE) - .withUser(eperson) .build(); MetadataField abs = mfss.findByElement(context, "dc", "description", "abstract"); @@ -909,10 +908,9 @@ public void adminTryToPatchAddMetadataToBoxesWithDifferentLayoutSecurityTest() t .withIssueDate("2015-06-25") .build(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, eperson, null) .withDspaceObject(itemA) .withAction(Constants.WRITE) - .withUser(eperson) .build(); MetadataField author = mfss.findByElement(context, "dc", "contributor", "author"); @@ -1023,10 +1021,9 @@ public void patchRemoveMetadataContainedInAdministratorAndPublicBoxesTest() thro .withAuthor("Smith, Maria") .build(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, eperson, null) .withDspaceObject(itemA) .withAction(Constants.WRITE) - .withUser(eperson) .build(); itemService.addMetadata(context, itemA, "dc", "description", "abstract", null, "A secured abstract"); @@ -1123,10 +1120,9 @@ public void patchRemoveMetadataContainedInBoxesWithOnlyOwnerLayoutSecurityTest() .withDescriptionAbstract("A secured abstract") .build(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, eperson, null) .withDspaceObject(itemA) .withAction(Constants.WRITE) - .withUser(eperson) .build(); MetadataField abs = mfss.findByElement(context, "dc", "description", "abstract"); @@ -1221,13 +1217,16 @@ public void patchRemoveMetadataContainedInBoxesWithCustomDataLayoutSecurityTest( .withAuthor("Smith, Maria") .build(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, userA, null) .withDspaceObject(itemA) .withAction(Constants.WRITE) - .withUser(userA) - .withGroup(groupA) .build(); + ResourcePolicyBuilder.createResourcePolicy(context, null, groupA) + .withDspaceObject(itemA) + .withAction(Constants.WRITE) + .build(); + itemService.addMetadata(context, itemA, "dc", "description", "abstract", null, "A secured abstract"); itemService.addMetadata(context, itemA, "cris", "policy", "eperson", null, userA.getFullName(), userA.getID().toString(), 600); @@ -1328,10 +1327,9 @@ public void patchReplaceMetadataContainedInAdministratorAndPublicBoxesTest() thr .withAuthor("Smith, Maria") .build(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, eperson, null) .withDspaceObject(itemA) .withAction(Constants.WRITE) - .withUser(eperson) .build(); itemService.addMetadata(context, itemA, "dc", "description", "abstract", null, "A secured abstract"); @@ -1442,17 +1440,18 @@ public void patchReplaceMetadataContainedInBoxesWithCustomDataLayoutSecurityTest .withAuthor("Smith, Maria") .build(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, userA, null) .withDspaceObject(itemA) .withAction(Constants.WRITE) - .withUser(userA) - .withGroup(groupA) .build(); + ResourcePolicyBuilder.createResourcePolicy(context, null, groupA) + .withDspaceObject(itemA) + .withAction(Constants.WRITE) + .build(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, eperson, null) .withDspaceObject(itemA) .withAction(Constants.WRITE) - .withUser(eperson) .build(); itemService.addMetadata(context, itemA, "dc", "description", "abstract", null, "A secured abstract"); @@ -1589,15 +1588,15 @@ public void patchReplaceMetadataContainedInBoxesWithOnlyOwnerLayoutSecurityTest( .withDescriptionAbstract("A secured abstract") .build(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, eperson, null) .withDspaceObject(itemA) .withAction(Constants.WRITE) - .withUser(eperson).build(); + .build(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, userA, null) .withDspaceObject(itemA) .withAction(Constants.WRITE) - .withUser(userA).build(); + .build(); MetadataField abs = mfss.findByElement(context, "dc", "description", "abstract"); MetadataField title = mfss.findByElement(context, "dc", "title", null); @@ -1698,10 +1697,9 @@ public void patchMoveMetadataContainedInAdministratorAndPublicBoxesTest() throws .withAuthor("Doe, John") .build(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, eperson, null) .withDspaceObject(itemA) .withAction(Constants.WRITE) - .withUser(eperson) .build(); itemService.addMetadata(context, itemA, "dc", "description", "abstract", null, "First Abstract description"); @@ -1814,10 +1812,9 @@ public void patchMoveMetadataContainedInBoxesWithOnlyOwnerLayoutSecurityTest() t .withDescriptionAbstract("Second Abstract description") .build(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, eperson, null) .withDspaceObject(itemA) .withAction(Constants.WRITE) - .withUser(eperson) .build(); MetadataField abs = mfss.findByElement(context, "dc", "description", "abstract"); @@ -1938,16 +1935,19 @@ public void patchMoveMetadataContainedInBoxesWithCustomDataLayoutSecurityTest() .withAuthor("Doe, John") .build(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, userA, null) .withDspaceObject(itemA) .withAction(Constants.WRITE) - .withUser(userA) - .withGroup(groupA).build(); + .build(); + ResourcePolicyBuilder.createResourcePolicy(context, null, groupA) + .withDspaceObject(itemA) + .withAction(Constants.WRITE) + .build(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, eperson, null) .withDspaceObject(itemA) .withAction(Constants.WRITE) - .withUser(eperson).build(); + .build(); itemService.addMetadata(context, itemA, "dc", "description", "abstract", null, "First Abstract description"); itemService.addMetadata(context, itemA, "dc", "description", "abstract", null, "Second Abstract description"); diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/PatchWithAuthorityIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/PatchWithAuthorityIT.java index ddda2c97cc57..3d577f5ff575 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/PatchWithAuthorityIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/PatchWithAuthorityIT.java @@ -15,8 +15,8 @@ import static org.springframework.test.web.servlet.result.MockMvcResultMatchers.status; import java.util.List; -import javax.ws.rs.core.MediaType; +import jakarta.ws.rs.core.MediaType; import org.dspace.app.rest.model.MetadataValueRest; import org.dspace.app.rest.model.patch.AddOperation; import org.dspace.app.rest.model.patch.Operation; diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/StatisticsRestSearchByCategoryRepositoryIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/StatisticsRestSearchByCategoryRepositoryIT.java index c9afc668ea7b..f35ff8707bd3 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/StatisticsRestSearchByCategoryRepositoryIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/StatisticsRestSearchByCategoryRepositoryIT.java @@ -34,8 +34,8 @@ import java.util.List; import java.util.Locale; import java.util.UUID; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import com.fasterxml.jackson.core.JsonProcessingException; import org.dspace.app.rest.matcher.UsageReportMatcher; import org.dspace.app.rest.model.UsageReportPointCityRest; @@ -162,10 +162,10 @@ public void setUp() throws Exception { project2Item = ItemBuilder.createItem(context, collectionProjects).withTitle("Project 2") .withProjectCoinvestigators("Person#1", personItem.getID().toString()).build(); authorizeService.removeAllPolicies(context, project2Item); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, eperson, null) .withDspaceObject(project2Item) .withAction(Constants.READ) - .withUser(eperson).build(); + .build(); project3Item = ItemBuilder.createItem(context, collectionProjects).withTitle("Project 3") .withProjectInvestigator("Person#2", person2Item.getID().toString()).build(); @@ -196,10 +196,10 @@ public void setUp() throws Exception { bitstream2Visited2 = BitstreamBuilder.createBitstream(context, publication2Item, toInputStream("test", UTF_8)).withName("Bitstream2Visited2Name").build(); authorizeService.removeAllPolicies(context, bitstream2Visited2); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, eperson, null) .withDspaceObject(bitstream2Visited2) .withAction(Constants.READ) - .withUser(eperson).build(); + .build(); bitstream3NotVisited = BitstreamBuilder.createBitstream(context, publication3Item, toInputStream("test", UTF_8)).withName("Bitstream3NotVisitedName").build(); bitstreamProjVisited = BitstreamBuilder.createBitstream(context, diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/SubmissionDeduplicationRestIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/SubmissionDeduplicationRestIT.java index b47e543aee15..594fc9239cec 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/SubmissionDeduplicationRestIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/SubmissionDeduplicationRestIT.java @@ -27,8 +27,8 @@ import java.util.List; import java.util.Map; import java.util.UUID; -import javax.ws.rs.core.MediaType; +import jakarta.ws.rs.core.MediaType; import org.dspace.app.rest.matcher.WorkspaceItemMatcher; import org.dspace.app.rest.model.patch.AddOperation; import org.dspace.app.rest.model.patch.Operation; diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/VocabularyRestRepositoryIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/VocabularyRestRepositoryIT.java index ca034840b2d9..14f2c05cb2a7 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/VocabularyRestRepositoryIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/VocabularyRestRepositoryIT.java @@ -23,8 +23,8 @@ import java.util.Map; import java.util.UUID; import java.util.concurrent.atomic.AtomicReference; -import javax.ws.rs.core.MediaType; +import jakarta.ws.rs.core.MediaType; import org.dspace.app.rest.matcher.VocabularyMatcher; import org.dspace.app.rest.model.patch.Operation; import org.dspace.app.rest.model.patch.ReplaceOperation; diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/WorkspaceItemPatentStepIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/WorkspaceItemPatentStepIT.java index 5cafa524f1e5..ddb44af2a228 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/WorkspaceItemPatentStepIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/WorkspaceItemPatentStepIT.java @@ -17,8 +17,8 @@ import java.util.HashMap; import java.util.List; import java.util.Map; -import javax.ws.rs.core.MediaType; +import jakarta.ws.rs.core.MediaType; import org.dspace.app.rest.model.patch.AddOperation; import org.dspace.app.rest.model.patch.Operation; import org.dspace.app.rest.test.AbstractControllerIntegrationTest; diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/authorization/EditMetadataFeatureIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/authorization/EditMetadataFeatureIT.java index 0c24f7830769..596a58baeabf 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/authorization/EditMetadataFeatureIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/authorization/EditMetadataFeatureIT.java @@ -90,10 +90,9 @@ public void checkCanEditMetadataFeatureTest() throws Exception { context.turnOffAuthorisationSystem(); configurationService.setProperty("edit.metadata.allowed-group", groupA.getID()); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, user, null) .withDspaceObject(itemA) .withAction(Constants.WRITE) - .withUser(user) .build(); context.restoreAuthSystemState(); @@ -130,10 +129,9 @@ public void checkCanEditMetadataFeatureTest() throws Exception { public void checkCanEditMetadataFeatureWithDefaulGroupUnsetTest() throws Exception { context.turnOffAuthorisationSystem(); - ResourcePolicyBuilder.createResourcePolicy(context) + ResourcePolicyBuilder.createResourcePolicy(context, user, null) .withDspaceObject(itemA) .withAction(Constants.WRITE) - .withUser(user) .build(); context.restoreAuthSystemState(); diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/layout/CrisLayoutTabRestRepositoryIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/layout/CrisLayoutTabRestRepositoryIT.java index e4997c8d3f43..200a86aeb4ac 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/layout/CrisLayoutTabRestRepositoryIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/layout/CrisLayoutTabRestRepositoryIT.java @@ -40,8 +40,8 @@ import java.util.ArrayList; import java.util.List; import java.util.concurrent.atomic.AtomicReference; -import javax.ws.rs.core.MediaType; +import jakarta.ws.rs.core.MediaType; import com.fasterxml.jackson.databind.ObjectMapper; import org.dspace.app.rest.matcher.CrisLayoutTabMatcher; import org.dspace.app.rest.model.CrisLayoutTabRest; diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/security/jwt/UserAgreementClaimProviderTest.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/security/jwt/UserAgreementClaimProviderTest.java index 932e129c37f5..eb7aa1147415 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/security/jwt/UserAgreementClaimProviderTest.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/security/jwt/UserAgreementClaimProviderTest.java @@ -15,8 +15,8 @@ import java.sql.SQLException; import java.util.UUID; -import javax.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequest; import com.nimbusds.jwt.JWTClaimsSet; import org.dspace.core.Context; import org.dspace.eperson.EPerson; From 1945ab53fe948ec01fba8b30f471c1c46543161a Mon Sep 17 00:00:00 2001 From: Andrea Bollini Date: Sun, 8 Sep 2024 16:53:16 +0200 Subject: [PATCH 03/35] DSC-1848 fix checkstyle issues --- .../org/dspace/app/metrics/CrisMetrics.java | 3 +-- .../dao/impl/ResourcePolicyDAOImpl.java | 2 +- .../batch/ImpBitstreamMetadatavalue.java | 1 - .../org/dspace/batch/ImpMetadatavalue.java | 1 - .../main/java/org/dspace/batch/ImpRecord.java | 1 - .../org/dspace/batch/ImpWorkflowNState.java | 1 - .../org/dspace/content/ItemServiceImpl.java | 2 +- .../org/dspace/core/AbstractHibernateDAO.java | 2 +- .../org/dspace/eperson/RegistrationData.java | 4 ++-- .../eperson/RegistrationDataMetadata.java | 2 -- .../external/model/ExternalDataObject.java | 2 +- .../SimpleXpathMetadatumContributor.java | 2 +- ...penAireImportMetadataSourceServiceImpl.java | 4 ++-- .../vufind/callable/CountByQueryCallable.java | 4 ++-- .../vufind/callable/GetByVuFindIdCallable.java | 1 - .../vufind/callable/SearchByQueryCallable.java | 1 - .../org/dspace/layout/CrisLayoutBox2Field.java | 1 - .../dspace/metrics/scopus/CrisMetricDTO.java | 2 +- .../dspace/storage/rdbms/DatabaseUtils.java | 2 +- .../crosswalks/XlsCollectionCrosswalkIT.java | 2 +- .../dspace/workflow/WorkflowCurationIT.java | 1 - .../repository/BitstreamRestRepository.java | 1 - .../rest/repository/EPersonRestRepository.java | 2 +- .../repository/RegistrationRestRepository.java | 1 - .../security/jwt/MachineClaimProvider.java | 2 +- .../jwt/UserAgreementClaimProvider.java | 2 +- .../rest/AuthenticationRestControllerIT.java | 2 +- .../app/rest/EPersonGroupRestControllerIT.java | 5 +---- .../rest/EPersonRestRepositoryInviationIT.java | 2 +- .../org/dspace/app/rest/LayoutSecurityIT.java | 18 +++++++++--------- .../dspace/app/rest/OrcidLoginFilterIT.java | 2 +- ...isticsRestSearchByCategoryRepositoryIT.java | 2 +- .../layout/CrisLayoutTabRestRepositoryIT.java | 2 +- .../jwt/UserAgreementClaimProviderTest.java | 2 +- .../services/events/SystemEventService.java | 2 +- 35 files changed, 35 insertions(+), 51 deletions(-) diff --git a/dspace-api/src/main/java/org/dspace/app/metrics/CrisMetrics.java b/dspace-api/src/main/java/org/dspace/app/metrics/CrisMetrics.java index 09c5a19066f6..443d46944869 100644 --- a/dspace-api/src/main/java/org/dspace/app/metrics/CrisMetrics.java +++ b/dspace-api/src/main/java/org/dspace/app/metrics/CrisMetrics.java @@ -14,7 +14,6 @@ import jakarta.persistence.GenerationType; import jakarta.persistence.Id; import jakarta.persistence.JoinColumn; -import jakarta.persistence.Lob; import jakarta.persistence.ManyToOne; import jakarta.persistence.SequenceGenerator; import jakarta.persistence.Table; @@ -51,7 +50,7 @@ public class CrisMetrics implements ReloadableEntity { private boolean last; - @Column(name="remark", length = Length.LONG32) + @Column(name = "remark", length = Length.LONG32) private String remark; private Double deltaPeriod1; diff --git a/dspace-api/src/main/java/org/dspace/authorize/dao/impl/ResourcePolicyDAOImpl.java b/dspace-api/src/main/java/org/dspace/authorize/dao/impl/ResourcePolicyDAOImpl.java index 0bb2a8f359d5..348c9a48e71d 100644 --- a/dspace-api/src/main/java/org/dspace/authorize/dao/impl/ResourcePolicyDAOImpl.java +++ b/dspace-api/src/main/java/org/dspace/authorize/dao/impl/ResourcePolicyDAOImpl.java @@ -10,8 +10,8 @@ import static java.util.Collections.emptyList; import java.sql.SQLException; -import java.util.Date; import java.util.Collections; +import java.util.Date; import java.util.LinkedList; import java.util.List; import java.util.UUID; diff --git a/dspace-api/src/main/java/org/dspace/batch/ImpBitstreamMetadatavalue.java b/dspace-api/src/main/java/org/dspace/batch/ImpBitstreamMetadatavalue.java index 21c2656e1985..35247ad2d2f1 100644 --- a/dspace-api/src/main/java/org/dspace/batch/ImpBitstreamMetadatavalue.java +++ b/dspace-api/src/main/java/org/dspace/batch/ImpBitstreamMetadatavalue.java @@ -15,7 +15,6 @@ import jakarta.persistence.JoinColumn; import jakarta.persistence.ManyToOne; import jakarta.persistence.Table; - import org.hibernate.Length; import org.hibernate.annotations.CacheConcurrencyStrategy; diff --git a/dspace-api/src/main/java/org/dspace/batch/ImpMetadatavalue.java b/dspace-api/src/main/java/org/dspace/batch/ImpMetadatavalue.java index 94bef2b4cb8d..85878cc62724 100644 --- a/dspace-api/src/main/java/org/dspace/batch/ImpMetadatavalue.java +++ b/dspace-api/src/main/java/org/dspace/batch/ImpMetadatavalue.java @@ -16,7 +16,6 @@ import jakarta.persistence.Lob; import jakarta.persistence.ManyToOne; import jakarta.persistence.Table; - import org.hibernate.Length; import org.hibernate.annotations.CacheConcurrencyStrategy; diff --git a/dspace-api/src/main/java/org/dspace/batch/ImpRecord.java b/dspace-api/src/main/java/org/dspace/batch/ImpRecord.java index a4a9d3bd3837..92f3d5602144 100644 --- a/dspace-api/src/main/java/org/dspace/batch/ImpRecord.java +++ b/dspace-api/src/main/java/org/dspace/batch/ImpRecord.java @@ -20,7 +20,6 @@ import jakarta.persistence.Table; import jakarta.persistence.Temporal; import jakarta.persistence.TemporalType; - import org.hibernate.annotations.CacheConcurrencyStrategy; /*** diff --git a/dspace-api/src/main/java/org/dspace/batch/ImpWorkflowNState.java b/dspace-api/src/main/java/org/dspace/batch/ImpWorkflowNState.java index 4939f7ca8e42..f21fa5c664fc 100644 --- a/dspace-api/src/main/java/org/dspace/batch/ImpWorkflowNState.java +++ b/dspace-api/src/main/java/org/dspace/batch/ImpWorkflowNState.java @@ -20,7 +20,6 @@ import jakarta.persistence.JoinTable; import jakarta.persistence.ManyToMany; import jakarta.persistence.Table; - import org.hibernate.annotations.CacheConcurrencyStrategy; /*** diff --git a/dspace-api/src/main/java/org/dspace/content/ItemServiceImpl.java b/dspace-api/src/main/java/org/dspace/content/ItemServiceImpl.java index d2da5b2bcd17..f7a4b5eaab1e 100644 --- a/dspace-api/src/main/java/org/dspace/content/ItemServiceImpl.java +++ b/dspace-api/src/main/java/org/dspace/content/ItemServiceImpl.java @@ -2001,7 +2001,7 @@ public int countAllItems(Context context, Community community) throws SQLExcepti @Override protected void getAuthoritiesAndConfidences(String fieldKey, int dsoType, Collection collection, - List values, List authorities, + List values, List authorities, List confidences, int i) { Choices c = choiceAuthorityService.getBestMatch(fieldKey, values.get(i), dsoType, collection, null); authorities.add(c.values.length > 0 && c.values[0] != null ? c.values[0].authority : null); diff --git a/dspace-api/src/main/java/org/dspace/core/AbstractHibernateDAO.java b/dspace-api/src/main/java/org/dspace/core/AbstractHibernateDAO.java index b60e0702ccc0..63aa461819e9 100644 --- a/dspace-api/src/main/java/org/dspace/core/AbstractHibernateDAO.java +++ b/dspace-api/src/main/java/org/dspace/core/AbstractHibernateDAO.java @@ -19,9 +19,9 @@ import java.util.stream.Stream; import com.google.common.collect.AbstractIterator; +import jakarta.persistence.Column; import jakarta.persistence.Id; import jakarta.persistence.Query; -import jakarta.persistence.Column; import jakarta.persistence.criteria.CriteriaBuilder; import jakarta.persistence.criteria.CriteriaQuery; import jakarta.persistence.criteria.Expression; diff --git a/dspace-api/src/main/java/org/dspace/eperson/RegistrationData.java b/dspace-api/src/main/java/org/dspace/eperson/RegistrationData.java index 5b4bd9fb9afb..af250dc42013 100644 --- a/dspace-api/src/main/java/org/dspace/eperson/RegistrationData.java +++ b/dspace-api/src/main/java/org/dspace/eperson/RegistrationData.java @@ -13,8 +13,8 @@ import java.util.SortedSet; import java.util.TreeSet; -import jakarta.persistence.Column; import jakarta.persistence.CascadeType; +import jakarta.persistence.Column; import jakarta.persistence.Entity; import jakarta.persistence.EnumType; import jakarta.persistence.Enumerated; @@ -24,9 +24,9 @@ import jakarta.persistence.Id; import jakarta.persistence.JoinColumn; import jakarta.persistence.JoinTable; -import jakarta.persistence.SequenceGenerator; import jakarta.persistence.ManyToMany; import jakarta.persistence.OneToMany; +import jakarta.persistence.SequenceGenerator; import jakarta.persistence.Table; import jakarta.persistence.Temporal; import jakarta.persistence.TemporalType; diff --git a/dspace-api/src/main/java/org/dspace/eperson/RegistrationDataMetadata.java b/dspace-api/src/main/java/org/dspace/eperson/RegistrationDataMetadata.java index 0c272afa0898..8a35d3b6cef3 100644 --- a/dspace-api/src/main/java/org/dspace/eperson/RegistrationDataMetadata.java +++ b/dspace-api/src/main/java/org/dspace/eperson/RegistrationDataMetadata.java @@ -14,14 +14,12 @@ import jakarta.persistence.GenerationType; import jakarta.persistence.Id; import jakarta.persistence.JoinColumn; -import jakarta.persistence.Lob; import jakarta.persistence.ManyToOne; import jakarta.persistence.SequenceGenerator; import jakarta.persistence.Table; import org.dspace.content.MetadataField; import org.dspace.core.ReloadableEntity; import org.hibernate.Length; -import org.hibernate.annotations.Type; /** * Metadata related to a registration data {@link RegistrationData} diff --git a/dspace-api/src/main/java/org/dspace/external/model/ExternalDataObject.java b/dspace-api/src/main/java/org/dspace/external/model/ExternalDataObject.java index 941c000731cf..2ae1f97f6ef4 100644 --- a/dspace-api/src/main/java/org/dspace/external/model/ExternalDataObject.java +++ b/dspace-api/src/main/java/org/dspace/external/model/ExternalDataObject.java @@ -9,8 +9,8 @@ import java.util.ArrayList; import java.util.List; -import java.util.UUID; import java.util.Objects; +import java.util.UUID; import org.apache.logging.log4j.LogManager; import org.apache.logging.log4j.Logger; diff --git a/dspace-api/src/main/java/org/dspace/importer/external/metadatamapping/contributor/SimpleXpathMetadatumContributor.java b/dspace-api/src/main/java/org/dspace/importer/external/metadatamapping/contributor/SimpleXpathMetadatumContributor.java index 466b763fdc1b..18644950ff2c 100644 --- a/dspace-api/src/main/java/org/dspace/importer/external/metadatamapping/contributor/SimpleXpathMetadatumContributor.java +++ b/dspace-api/src/main/java/org/dspace/importer/external/metadatamapping/contributor/SimpleXpathMetadatumContributor.java @@ -13,8 +13,8 @@ import java.util.List; import java.util.Map; -import org.apache.commons.lang.StringUtils; import jakarta.annotation.Resource; +import org.apache.commons.lang.StringUtils; import org.apache.logging.log4j.Logger; import org.dspace.importer.external.metadatamapping.MetadataFieldConfig; import org.dspace.importer.external.metadatamapping.MetadataFieldMapping; diff --git a/dspace-api/src/main/java/org/dspace/importer/external/openaire/service/OpenAireImportMetadataSourceServiceImpl.java b/dspace-api/src/main/java/org/dspace/importer/external/openaire/service/OpenAireImportMetadataSourceServiceImpl.java index dab95ce620c7..3790b49b4a9e 100644 --- a/dspace-api/src/main/java/org/dspace/importer/external/openaire/service/OpenAireImportMetadataSourceServiceImpl.java +++ b/dspace-api/src/main/java/org/dspace/importer/external/openaire/service/OpenAireImportMetadataSourceServiceImpl.java @@ -16,14 +16,14 @@ import java.util.List; import java.util.concurrent.Callable; -import org.apache.logging.log4j.LogManager; -import org.apache.logging.log4j.Logger; import jakarta.el.MethodNotFoundException; import jakarta.ws.rs.client.Client; import jakarta.ws.rs.client.ClientBuilder; import jakarta.ws.rs.client.Invocation; import jakarta.ws.rs.client.WebTarget; import jakarta.ws.rs.core.Response; +import org.apache.logging.log4j.LogManager; +import org.apache.logging.log4j.Logger; import org.dspace.content.Item; import org.dspace.importer.external.datamodel.ImportRecord; import org.dspace.importer.external.datamodel.Query; diff --git a/dspace-api/src/main/java/org/dspace/importer/external/vufind/callable/CountByQueryCallable.java b/dspace-api/src/main/java/org/dspace/importer/external/vufind/callable/CountByQueryCallable.java index 94f7c3795180..3fc8c5908531 100644 --- a/dspace-api/src/main/java/org/dspace/importer/external/vufind/callable/CountByQueryCallable.java +++ b/dspace-api/src/main/java/org/dspace/importer/external/vufind/callable/CountByQueryCallable.java @@ -9,11 +9,11 @@ import java.util.concurrent.Callable; +import com.jayway.jsonpath.JsonPath; +import com.jayway.jsonpath.ReadContext; import jakarta.ws.rs.client.Invocation; import jakarta.ws.rs.client.WebTarget; import jakarta.ws.rs.core.Response; -import com.jayway.jsonpath.JsonPath; -import com.jayway.jsonpath.ReadContext; import org.dspace.importer.external.datamodel.Query; public class CountByQueryCallable implements Callable { diff --git a/dspace-api/src/main/java/org/dspace/importer/external/vufind/callable/GetByVuFindIdCallable.java b/dspace-api/src/main/java/org/dspace/importer/external/vufind/callable/GetByVuFindIdCallable.java index 000c437b74a5..f7371138d436 100644 --- a/dspace-api/src/main/java/org/dspace/importer/external/vufind/callable/GetByVuFindIdCallable.java +++ b/dspace-api/src/main/java/org/dspace/importer/external/vufind/callable/GetByVuFindIdCallable.java @@ -12,7 +12,6 @@ import jakarta.ws.rs.client.Invocation; import jakarta.ws.rs.client.WebTarget; import jakarta.ws.rs.core.Response; - import org.apache.http.HttpException; public class GetByVuFindIdCallable implements Callable { diff --git a/dspace-api/src/main/java/org/dspace/importer/external/vufind/callable/SearchByQueryCallable.java b/dspace-api/src/main/java/org/dspace/importer/external/vufind/callable/SearchByQueryCallable.java index 055add59ea83..066d68480ebf 100644 --- a/dspace-api/src/main/java/org/dspace/importer/external/vufind/callable/SearchByQueryCallable.java +++ b/dspace-api/src/main/java/org/dspace/importer/external/vufind/callable/SearchByQueryCallable.java @@ -12,7 +12,6 @@ import jakarta.ws.rs.client.Invocation; import jakarta.ws.rs.client.WebTarget; import jakarta.ws.rs.core.Response; - import org.apache.http.HttpException; import org.dspace.importer.external.datamodel.Query; diff --git a/dspace-api/src/main/java/org/dspace/layout/CrisLayoutBox2Field.java b/dspace-api/src/main/java/org/dspace/layout/CrisLayoutBox2Field.java index 952ef9142f61..d2638242267f 100644 --- a/dspace-api/src/main/java/org/dspace/layout/CrisLayoutBox2Field.java +++ b/dspace-api/src/main/java/org/dspace/layout/CrisLayoutBox2Field.java @@ -17,7 +17,6 @@ import jakarta.persistence.ManyToOne; import jakarta.persistence.MapsId; import jakarta.persistence.Table; - import org.hibernate.annotations.CacheConcurrencyStrategy; /** diff --git a/dspace-api/src/main/java/org/dspace/metrics/scopus/CrisMetricDTO.java b/dspace-api/src/main/java/org/dspace/metrics/scopus/CrisMetricDTO.java index c8d57ba3f1b1..d28c0b73556e 100644 --- a/dspace-api/src/main/java/org/dspace/metrics/scopus/CrisMetricDTO.java +++ b/dspace-api/src/main/java/org/dspace/metrics/scopus/CrisMetricDTO.java @@ -9,9 +9,9 @@ import java.util.HashMap; import java.util.Map; +import com.google.gson.Gson; import jakarta.persistence.Lob; import jakarta.persistence.Transient; -import com.google.gson.Gson; /** * diff --git a/dspace-api/src/main/java/org/dspace/storage/rdbms/DatabaseUtils.java b/dspace-api/src/main/java/org/dspace/storage/rdbms/DatabaseUtils.java index 1740a082c07e..1b18a5c78004 100644 --- a/dspace-api/src/main/java/org/dspace/storage/rdbms/DatabaseUtils.java +++ b/dspace-api/src/main/java/org/dspace/storage/rdbms/DatabaseUtils.java @@ -693,7 +693,7 @@ protected static synchronized void updateDatabase(DataSource datasource, Connect // and Flyway ONLY runs migrations that have a higher version number. flywayConfiguration.outOfOrder(outOfOrder); if (missing) { - flywayConfiguration.ignoreMigrationPatterns("*:ignored"); + flywayConfiguration.ignoreMigrationPatterns("*:ignored"); } // If a target version was specified, tell Flyway to ONLY migrate to that version diff --git a/dspace-api/src/test/java/org/dspace/content/integration/crosswalks/XlsCollectionCrosswalkIT.java b/dspace-api/src/test/java/org/dspace/content/integration/crosswalks/XlsCollectionCrosswalkIT.java index 162e48590454..aa3f75e7281b 100644 --- a/dspace-api/src/test/java/org/dspace/content/integration/crosswalks/XlsCollectionCrosswalkIT.java +++ b/dspace-api/src/test/java/org/dspace/content/integration/crosswalks/XlsCollectionCrosswalkIT.java @@ -97,7 +97,7 @@ public class XlsCollectionCrosswalkIT extends AbstractIntegrationTestWithDatabas private Community community; private Group anonymousGroup; - + private Group adminGroup; private static final String BITSTREAM_URL_FORMAT = "%s/api/core/bitstreams/%s/content"; diff --git a/dspace-api/src/test/java/org/dspace/workflow/WorkflowCurationIT.java b/dspace-api/src/test/java/org/dspace/workflow/WorkflowCurationIT.java index e7d625f33905..3fc15533cb1a 100644 --- a/dspace-api/src/test/java/org/dspace/workflow/WorkflowCurationIT.java +++ b/dspace-api/src/test/java/org/dspace/workflow/WorkflowCurationIT.java @@ -12,7 +12,6 @@ import java.util.List; import java.util.regex.Pattern; -import jakarta.inject.Inject; import org.dspace.AbstractIntegrationTestWithDatabase; import org.dspace.builder.CollectionBuilder; import org.dspace.builder.CommunityBuilder; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/BitstreamRestRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/BitstreamRestRepository.java index d148ed2012f3..3f3da5dec97f 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/BitstreamRestRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/BitstreamRestRepository.java @@ -21,7 +21,6 @@ import com.fasterxml.jackson.databind.JsonNode; import com.fasterxml.jackson.databind.ObjectMapper; - import jakarta.annotation.Nullable; import jakarta.servlet.http.HttpServletRequest; import org.apache.commons.lang3.StringUtils; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/EPersonRestRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/EPersonRestRepository.java index cb11a1a7cfeb..aa5805da6848 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/EPersonRestRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/EPersonRestRepository.java @@ -14,8 +14,8 @@ import java.util.UUID; import com.fasterxml.jackson.databind.ObjectMapper; -import org.apache.commons.collections4.CollectionUtils; import jakarta.servlet.http.HttpServletRequest; +import org.apache.commons.collections4.CollectionUtils; import org.apache.commons.lang3.StringUtils; import org.apache.logging.log4j.LogManager; import org.apache.logging.log4j.Logger; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/RegistrationRestRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/RegistrationRestRepository.java index ce8d090788bf..96f0f9228961 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/RegistrationRestRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/RegistrationRestRepository.java @@ -20,7 +20,6 @@ import jakarta.servlet.ServletInputStream; import jakarta.servlet.http.HttpServletRequest; import jakarta.ws.rs.BadRequestException; - import org.apache.commons.lang3.StringUtils; import org.apache.logging.log4j.LogManager; import org.apache.logging.log4j.Logger; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/jwt/MachineClaimProvider.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/jwt/MachineClaimProvider.java index f889e8e7cb56..488d1bd1892a 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/jwt/MachineClaimProvider.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/jwt/MachineClaimProvider.java @@ -9,8 +9,8 @@ import java.sql.SQLException; -import jakarta.servlet.http.HttpServletRequest; import com.nimbusds.jwt.JWTClaimsSet; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.core.Context; import org.springframework.stereotype.Component; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/jwt/UserAgreementClaimProvider.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/jwt/UserAgreementClaimProvider.java index 8115ca18ab5f..362f6ecc4de8 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/jwt/UserAgreementClaimProvider.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/security/jwt/UserAgreementClaimProvider.java @@ -9,8 +9,8 @@ import java.sql.SQLException; -import jakarta.servlet.http.HttpServletRequest; import com.nimbusds.jwt.JWTClaimsSet; +import jakarta.servlet.http.HttpServletRequest; import org.apache.commons.lang3.BooleanUtils; import org.dspace.content.Item; import org.dspace.core.Context; diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/AuthenticationRestControllerIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/AuthenticationRestControllerIT.java index 227c5ad9ed83..9b09c3155c83 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/AuthenticationRestControllerIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/AuthenticationRestControllerIT.java @@ -25,11 +25,11 @@ import static org.junit.Assert.assertNotEquals; import static org.junit.Assert.assertNotNull; import static org.junit.Assert.assertTrue; +import static org.springframework.test.web.servlet.request.MockMvcRequestBuilders.delete; import static org.springframework.test.web.servlet.request.MockMvcRequestBuilders.get; import static org.springframework.test.web.servlet.request.MockMvcRequestBuilders.post; import static org.springframework.test.web.servlet.result.MockMvcResultMatchers.content; import static org.springframework.test.web.servlet.result.MockMvcResultMatchers.cookie; -import static org.springframework.test.web.servlet.request.MockMvcRequestBuilders.delete; import static org.springframework.test.web.servlet.result.MockMvcResultMatchers.header; import static org.springframework.test.web.servlet.result.MockMvcResultMatchers.jsonPath; import static org.springframework.test.web.servlet.result.MockMvcResultMatchers.redirectedUrl; diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/EPersonGroupRestControllerIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/EPersonGroupRestControllerIT.java index 6864300d9c60..d7fae4854006 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/EPersonGroupRestControllerIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/EPersonGroupRestControllerIT.java @@ -22,8 +22,8 @@ import java.util.List; import java.util.UUID; -import jakarta.ws.rs.core.MediaType; import com.fasterxml.jackson.databind.ObjectMapper; +import jakarta.ws.rs.core.MediaType; import org.dspace.app.rest.model.RegistrationRest; import org.dspace.app.rest.test.AbstractControllerIntegrationTest; import org.dspace.builder.EPersonBuilder; @@ -35,9 +35,6 @@ import org.junit.Test; import org.springframework.beans.factory.annotation.Autowired; - - - public class EPersonGroupRestControllerIT extends AbstractControllerIntegrationTest { @Autowired private RegistrationDataService registrationDataService; diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/EPersonRestRepositoryInviationIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/EPersonRestRepositoryInviationIT.java index 3c542dec9165..fa3ceef89250 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/EPersonRestRepositoryInviationIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/EPersonRestRepositoryInviationIT.java @@ -26,8 +26,8 @@ import java.util.UUID; import java.util.concurrent.atomic.AtomicReference; -import jakarta.ws.rs.core.MediaType; import com.fasterxml.jackson.databind.ObjectMapper; +import jakarta.ws.rs.core.MediaType; import org.dspace.app.rest.jackson.IgnoreJacksonWriteOnlyAccess; import org.dspace.app.rest.model.EPersonRest; import org.dspace.app.rest.model.MetadataRest; diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/LayoutSecurityIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/LayoutSecurityIT.java index e8c4c0fd0d08..aefee25d821d 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/LayoutSecurityIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/LayoutSecurityIT.java @@ -1223,9 +1223,9 @@ public void patchRemoveMetadataContainedInBoxesWithCustomDataLayoutSecurityTest( .build(); ResourcePolicyBuilder.createResourcePolicy(context, null, groupA) - .withDspaceObject(itemA) - .withAction(Constants.WRITE) - .build(); + .withDspaceObject(itemA) + .withAction(Constants.WRITE) + .build(); itemService.addMetadata(context, itemA, "dc", "description", "abstract", null, "A secured abstract"); itemService.addMetadata(context, itemA, "cris", "policy", "eperson", null, userA.getFullName(), @@ -1445,9 +1445,9 @@ public void patchReplaceMetadataContainedInBoxesWithCustomDataLayoutSecurityTest .withAction(Constants.WRITE) .build(); ResourcePolicyBuilder.createResourcePolicy(context, null, groupA) - .withDspaceObject(itemA) - .withAction(Constants.WRITE) - .build(); + .withDspaceObject(itemA) + .withAction(Constants.WRITE) + .build(); ResourcePolicyBuilder.createResourcePolicy(context, eperson, null) .withDspaceObject(itemA) @@ -1940,9 +1940,9 @@ public void patchMoveMetadataContainedInBoxesWithCustomDataLayoutSecurityTest() .withAction(Constants.WRITE) .build(); ResourcePolicyBuilder.createResourcePolicy(context, null, groupA) - .withDspaceObject(itemA) - .withAction(Constants.WRITE) - .build(); + .withDspaceObject(itemA) + .withAction(Constants.WRITE) + .build(); ResourcePolicyBuilder.createResourcePolicy(context, eperson, null) .withDspaceObject(itemA) diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/OrcidLoginFilterIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/OrcidLoginFilterIT.java index 8126996d1074..a81afd3ef423 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/OrcidLoginFilterIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/OrcidLoginFilterIT.java @@ -29,7 +29,6 @@ import static org.springframework.test.web.servlet.result.MockMvcResultMatchers.redirectedUrl; import static org.springframework.test.web.servlet.result.MockMvcResultMatchers.status; -import jakarta.servlet.http.Cookie; import java.sql.SQLException; import java.text.ParseException; import java.util.UUID; @@ -39,6 +38,7 @@ import com.jayway.jsonpath.JsonPath; import com.nimbusds.jose.JOSEException; import com.nimbusds.jwt.SignedJWT; +import jakarta.servlet.http.Cookie; import org.dspace.app.rest.matcher.MetadataMatcher; import org.dspace.app.rest.model.AuthnRest; import org.dspace.app.rest.security.OrcidLoginFilter; diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/StatisticsRestSearchByCategoryRepositoryIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/StatisticsRestSearchByCategoryRepositoryIT.java index f35ff8707bd3..8f55bff8de8e 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/StatisticsRestSearchByCategoryRepositoryIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/StatisticsRestSearchByCategoryRepositoryIT.java @@ -35,8 +35,8 @@ import java.util.Locale; import java.util.UUID; -import jakarta.servlet.http.HttpServletRequest; import com.fasterxml.jackson.core.JsonProcessingException; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.matcher.UsageReportMatcher; import org.dspace.app.rest.model.UsageReportPointCityRest; import org.dspace.app.rest.model.UsageReportPointCountryRest; diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/layout/CrisLayoutTabRestRepositoryIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/layout/CrisLayoutTabRestRepositoryIT.java index 200a86aeb4ac..63762e79abbd 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/layout/CrisLayoutTabRestRepositoryIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/layout/CrisLayoutTabRestRepositoryIT.java @@ -41,8 +41,8 @@ import java.util.List; import java.util.concurrent.atomic.AtomicReference; -import jakarta.ws.rs.core.MediaType; import com.fasterxml.jackson.databind.ObjectMapper; +import jakarta.ws.rs.core.MediaType; import org.dspace.app.rest.matcher.CrisLayoutTabMatcher; import org.dspace.app.rest.model.CrisLayoutTabRest; import org.dspace.app.rest.model.patch.Operation; diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/security/jwt/UserAgreementClaimProviderTest.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/security/jwt/UserAgreementClaimProviderTest.java index eb7aa1147415..79bfc991e093 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/security/jwt/UserAgreementClaimProviderTest.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/security/jwt/UserAgreementClaimProviderTest.java @@ -16,8 +16,8 @@ import java.sql.SQLException; import java.util.UUID; -import jakarta.servlet.http.HttpServletRequest; import com.nimbusds.jwt.JWTClaimsSet; +import jakarta.servlet.http.HttpServletRequest; import org.dspace.core.Context; import org.dspace.eperson.EPerson; import org.dspace.eperson.service.EPersonService; diff --git a/dspace-services/src/main/java/org/dspace/services/events/SystemEventService.java b/dspace-services/src/main/java/org/dspace/services/events/SystemEventService.java index f51b4ca14831..d8e8368e82ec 100644 --- a/dspace-services/src/main/java/org/dspace/services/events/SystemEventService.java +++ b/dspace-services/src/main/java/org/dspace/services/events/SystemEventService.java @@ -13,9 +13,9 @@ import java.util.concurrent.ExecutorService; import java.util.concurrent.Executors; import java.util.function.Supplier; -import jakarta.annotation.PreDestroy; import com.google.common.util.concurrent.MoreExecutors; +import jakarta.annotation.PreDestroy; import org.apache.commons.lang3.ArrayUtils; import org.apache.logging.log4j.LogManager; import org.apache.logging.log4j.Logger; From f0bf2a47c000e87b14b10a3fb1aead45a01c4e1b Mon Sep 17 00:00:00 2001 From: Andrea Bollini Date: Sun, 8 Sep 2024 21:44:45 +0200 Subject: [PATCH 04/35] DSC-1848 update bitbucket pipelines to use java 17 --- bitbucket-pipelines.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/bitbucket-pipelines.yml b/bitbucket-pipelines.yml index eb7e30480c62..f4d4a87dd8ce 100644 --- a/bitbucket-pipelines.yml +++ b/bitbucket-pipelines.yml @@ -1,4 +1,4 @@ -image: maven:3.6.1 +image: maven:3.9.8-eclipse-temurin-17-focal definitions: docker: From ba65df3f441c833d0b683de3c61c532d8a8a927c Mon Sep 17 00:00:00 2001 From: Andrea Bollini Date: Sun, 8 Sep 2024 22:39:59 +0200 Subject: [PATCH 05/35] DSC-1848 cleanup flyway migration --- ....07.03__create_table_items_for_update.sql} | 0 .../oracle/V7.0_2020.01.22__deduplication.sql | 31 ----- .../V7.0_2020.02.20__DBMSImportFramework.sql | 93 ------------- ...ault-relationshipt-type-on-collections.sql | 30 ----- ...0_2020.05.06__tabs_boxes_configuration.sql | 122 ------------------ .../V7.0_2020.08.03__layout_refactoring.sql | 75 ----------- ...7.0_2020.08.27__layout_rendering_style.sql | 11 -- ....0_2020.09.09__orcid_queue_and_history.sql | 44 ------- ...09.16__orcid_history_add_status_column.sql | 9 -- .../V7.0_2020.10.16__nbevent_processed.sql | 19 --- ....0_2020.11.10__drop_imp_record_to_item.sql | 13 -- ...020.11.18__alter_column_harvested_item.sql | 13 -- .../oracle/V7.0_2020.11.19__cris_metrics.sql | 43 ------ ...020.12.01__cris_metrics_add_new_column.sql | 17 --- ...0_2020.12.08__cris_layout_metric_2_box.sql | 24 ---- ...20.12.09__cris_metrics_performance-fix.sql | 12 -- ...021.01.01__cris_layout_metric_2_box_id.sql | 14 -- ....0_2021.02.03__registration_data_group.sql | 17 --- .../oracle/V7.0_2021.03.25__layout_nested.sql | 29 ----- .../V7.0_2021.03.26__process_to_group.sql | 17 --- ..._cleanup_dspace-cris_migration_pre-7.0.sql | 13 -- ...id_history_and_orcid_queue_refactoring.sql | 24 ---- ...05.05__orcid_queue_add_attempts_column.sql | 9 -- ....05.24__cris_layoutfield_null_metadata.sql | 9 -- ...__alter_columns_left_right_entity_type.sql | 14 -- ..._columns_security_level_metadata_value.sql | 14 -- ...ns_security_level_to_imp_metadatavalue.sql | 14 -- ...mter_change_columns_subscription_table.sql | 41 ------ ...ble_crismetrics_change_column_resource.sql | 16 --- ...adatavalue_table_set_metadata_field_id.sql | 18 --- ..._tables_tab_box_create_tables_cell_row.sql | 74 ----------- ...box_entity_shortname_unique_constraint.sql | 9 -- ...ter_process_table_drop_not_null_userid.sql | 13 -- ....0_2021.11.26__alter_cris_layout_field.sql | 23 ---- ...5.06__cris_layout_box_2_security_group.sql | 17 --- ...5.08__cris_layout_tab_2_security_group.sql | 17 --- .../V7.2_2022.08.23__add_machine_salt.sql | 20 --- .../V7.3_2022.06.16__process_to_group.sql | 15 --- ....10__add_sequences_DBMSImportFramework.sql | 20 --- .../V7.6_2023.10.23__add_custom_filter.sql | 17 --- ....28__update_cris_layout_tab_constraint.sql | 18 --- ...ab_id_to_cris_layout_tab2securitygroup.sql | 14 -- ...ox_id_to_cris_layout_box2securitygroup.sql | 14 -- ....07.03__create_table_items_for_update.sql} | 0 44 files changed, 1076 deletions(-) rename dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/h2/{V7.6_2024.03.07__create_table_items_for_update.sql => V7.6_2024.07.03__create_table_items_for_update.sql} (100%) delete mode 100644 dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2020.01.22__deduplication.sql delete mode 100644 dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2020.02.20__DBMSImportFramework.sql delete mode 100644 dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2020.05.04__default-relationshipt-type-on-collections.sql delete mode 100644 dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2020.05.06__tabs_boxes_configuration.sql delete mode 100644 dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2020.08.03__layout_refactoring.sql delete mode 100644 dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2020.08.27__layout_rendering_style.sql delete mode 100644 dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2020.09.09__orcid_queue_and_history.sql delete mode 100644 dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2020.09.16__orcid_history_add_status_column.sql delete mode 100644 dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2020.10.16__nbevent_processed.sql delete mode 100644 dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2020.11.10__drop_imp_record_to_item.sql delete mode 100644 dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2020.11.18__alter_column_harvested_item.sql delete mode 100644 dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2020.11.19__cris_metrics.sql delete mode 100644 dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2020.12.01__cris_metrics_add_new_column.sql delete mode 100644 dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2020.12.08__cris_layout_metric_2_box.sql delete mode 100644 dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2020.12.09__cris_metrics_performance-fix.sql delete mode 100644 dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2021.01.01__cris_layout_metric_2_box_id.sql delete mode 100644 dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2021.02.03__registration_data_group.sql delete mode 100644 dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2021.03.25__layout_nested.sql delete mode 100644 dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2021.03.26__process_to_group.sql delete mode 100644 dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2021.03.30__cleanup_dspace-cris_migration_pre-7.0.sql delete mode 100644 dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2021.04.21__orcid_history_and_orcid_queue_refactoring.sql delete mode 100644 dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2021.05.05__orcid_queue_add_attempts_column.sql delete mode 100644 dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2021.05.24__cris_layoutfield_null_metadata.sql delete mode 100644 dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2021.05.31__alter_columns_left_right_entity_type.sql delete mode 100644 dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2021.06.24__add_columns_security_level_metadata_value.sql delete mode 100644 dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2021.07.22__add_columns_security_level_to_imp_metadatavalue.sql delete mode 100644 dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2021.07.30__add_table_subscriptionparamter_change_columns_subscription_table.sql delete mode 100644 dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2021.09.03__alter_table_crismetrics_change_column_resource.sql delete mode 100644 dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2021.10.03__update_metadatavalue_table_set_metadata_field_id.sql delete mode 100644 dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2021.11.05__delete_tab2box_alter_tables_tab_box_create_tables_cell_row.sql delete mode 100644 dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2021.11.17__drop_cris_layout_box_entity_shortname_unique_constraint.sql delete mode 100644 dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2021.11.25__alter_process_table_drop_not_null_userid.sql delete mode 100644 dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2021.11.26__alter_cris_layout_field.sql delete mode 100644 dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.2_2022.05.06__cris_layout_box_2_security_group.sql delete mode 100644 dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.2_2022.05.08__cris_layout_tab_2_security_group.sql delete mode 100644 dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.2_2022.08.23__add_machine_salt.sql delete mode 100644 dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.3_2022.06.16__process_to_group.sql delete mode 100644 dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.4_2023.05.10__add_sequences_DBMSImportFramework.sql delete mode 100644 dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.6_2023.10.23__add_custom_filter.sql delete mode 100644 dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.6_2023.10.28__update_cris_layout_tab_constraint.sql delete mode 100644 dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.6_2023.12.12__add_alternative_tab_id_to_cris_layout_tab2securitygroup.sql delete mode 100644 dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.6_2023.12.13__add_alternative_box_id_to_cris_layout_box2securitygroup.sql rename dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/postgres/{V7.6_2024.03.07__create_table_items_for_update.sql => V7.6_2024.07.03__create_table_items_for_update.sql} (100%) diff --git a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/h2/V7.6_2024.03.07__create_table_items_for_update.sql b/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/h2/V7.6_2024.07.03__create_table_items_for_update.sql similarity index 100% rename from dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/h2/V7.6_2024.03.07__create_table_items_for_update.sql rename to dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/h2/V7.6_2024.07.03__create_table_items_for_update.sql diff --git a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2020.01.22__deduplication.sql b/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2020.01.22__deduplication.sql deleted file mode 100644 index b4dcf8ba068e..000000000000 --- a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2020.01.22__deduplication.sql +++ /dev/null @@ -1,31 +0,0 @@ --- --- The contents of this file are subject to the license and copyright --- detailed in the LICENSE and NOTICE files at the root of the source --- tree and available online at --- --- http://www.dspace.org/license/ --- - -CREATE SEQUENCE deduplication_id_seq; - ------------------------------------------------------------------------------------ --- Create deduplication table ------------------------------------------------------------------------------------ -CREATE TABLE deduplication ( - deduplication_id INTEGER PRIMARY KEY, - fake NUMBER(1), - tofix NUMBER(1), - note VARCHAR2(256), - admin_time TIMESTAMP, - reader_time TIMESTAMP, - reader_note VARCHAR2(256), - reject_time TIMESTAMP, - submitter_decision VARCHAR2(256), - workflow_decision VARCHAR2(256), - admin_decision VARCHAR2(256), - eperson_id RAW(16), - admin_id RAW(16), - reader_id RAW(16), - first_item_id RAW(16), - second_item_id RAW(16) -); \ No newline at end of file diff --git a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2020.02.20__DBMSImportFramework.sql b/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2020.02.20__DBMSImportFramework.sql deleted file mode 100644 index 920367d54ca8..000000000000 --- a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2020.02.20__DBMSImportFramework.sql +++ /dev/null @@ -1,93 +0,0 @@ --- --- The contents of this file are subject to the license and copyright --- detailed in the LICENSE and NOTICE files at the root of the source --- tree and available online at --- --- http://www.dspace.org/license/ --- - ------------------------------------------------------------------------------------ --- Create tables for DBMS Import framework ------------------------------------------------------------------------------------ - -CREATE TABLE imp_record ( - imp_id INTEGER PRIMARY KEY, - imp_record_id VARCHAR(256) NOT NULL, - imp_eperson_uuid RAW(16) NOT NULL REFERENCES eperson(uuid), - imp_collection_uuid RAW(16) NOT NULL REFERENCES collection(uuid), - status VARCHAR(1), - operation VARCHAR(64), - last_modified TIMESTAMP, - handle VARCHAR(64), - imp_sourceref VARCHAR(256) -); - -CREATE TABLE imp_workflow_nstate( - imp_wnstate_op_id INTEGER PRIMARY KEY, - imp_wnstate_desc VARCHAR(64), - imp_wnstate_op VARCHAR(64) NOT NULL, - imp_wnstate_op_par VARCHAR(64), - imp_wnstate_order INTEGER NOT NULL, - imp_wnstate_eperson_uuid RAW(16) -); - -CREATE TABLE imp_record_wstate( - imp_id INTEGER NOT NULL REFERENCES imp_record(imp_id), - imp_wnstate_op_id INTEGER NOT NULL REFERENCES imp_workflow_nstate(imp_wnstate_op_id), - PRIMARY KEY (imp_id, imp_wnstate_op_id) -); - -CREATE TABLE imp_metadatavalue ( - imp_metadatavalue_id INTEGER PRIMARY KEY, - imp_id INTEGER NOT NULL REFERENCES imp_record(imp_id), - imp_schema VARCHAR(128) NOT NULL, - imp_element VARCHAR(128) NOT NULL, - imp_qualifier VARCHAR(128), - imp_value CLOB NOT NULL, - imp_authority VARCHAR(256), - imp_confidence INTEGER DEFAULT -1, - metadata_order INTEGER NOT NULL, - text_lang VARCHAR(32) -); - -CREATE INDEX imp_mv_idx_impid ON imp_metadatavalue(imp_id); - -CREATE TABLE imp_bitstream ( - imp_bitstream_id INTEGER PRIMARY KEY, - imp_id INTEGER NOT NULL REFERENCES imp_record(imp_id), - filepath VARCHAR(512) NOT NULL, - description VARCHAR(512), - bundle VARCHAR(512), - bitstream_order INTEGER, - primary_bitstream NUMBER(1), - assetstore INTEGER DEFAULT -1, - name VARCHAR(512), - imp_blob BLOB, - embargo_policy INTEGER DEFAULT -1, - embargo_group RAW(16), - embargo_start_date VARCHAR(100), - md5value VARCHAR(32) -); - -CREATE INDEX imp_bit_idx_impid ON imp_bitstream(imp_id); - -CREATE TABLE imp_bitstream_metadatavalue ( - imp_bitstream_metadatavalue_id INTEGER PRIMARY KEY, - imp_bitstream_id INTEGER NOT NULL REFERENCES imp_bitstream(imp_bitstream_id), - imp_schema VARCHAR(128) NOT NULL, - imp_element VARCHAR(128) NOT NULL, - imp_qualifier VARCHAR(128), - imp_value CLOB NOT NULL, - imp_authority VARCHAR(256), - imp_confidence INTEGER DEFAULT -1, - metadata_order INTEGER NOT NULL, - text_lang VARCHAR(32) -); - -CREATE INDEX imp_bitstream_mv_idx_impid ON imp_bitstream_metadatavalue(imp_bitstream_id); - -CREATE TABLE imp_record_to_item ( - imp_record_id VARCHAR(256) PRIMARY KEY, - imp_item_id RAW(16) NOT NULL, - imp_sourceref VARCHAR(256) -); diff --git a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2020.05.04__default-relationshipt-type-on-collections.sql b/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2020.05.04__default-relationshipt-type-on-collections.sql deleted file mode 100644 index 375abb54d3c2..000000000000 --- a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2020.05.04__default-relationshipt-type-on-collections.sql +++ /dev/null @@ -1,30 +0,0 @@ --- --- The contents of this file are subject to the license and copyright --- detailed in the LICENSE and NOTICE files at the root of the source --- tree and available online at --- --- http://www.dspace.org/license/ --- - ------------------------------------------------------------------------------------ --- Insert default relationship type on collections ------------------------------------------------------------------------------------ - -INSERT INTO metadatavalue (confidence, place,text_value, dspace_object_id, metadata_field_id) -select -1,0,'Publication', uuid, (SELECT metadata_field_id - FROM metadatafieldregistry - WHERE element = 'type' and metadata_schema_id = ( - SELECT metadata_schema_id - FROM metadataschemaregistry - WHERE short_id = 'relationship' - )) -FROM collection -where uuid not in ( - select c.uuid - from collection c inner join metadatavalue m on m.dspace_object_id = c.uuid and m.metadata_field_id = ( - select metadata_field_id - from metadatafieldregistry reg inner join metadataschemaregistry m2 on reg.metadata_schema_id = m2.metadata_schema_id - where m2.short_id='relationship' and reg.element='type' - ) -) - diff --git a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2020.05.06__tabs_boxes_configuration.sql b/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2020.05.06__tabs_boxes_configuration.sql deleted file mode 100644 index 6b4659626998..000000000000 --- a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2020.05.06__tabs_boxes_configuration.sql +++ /dev/null @@ -1,122 +0,0 @@ --- --- The contents of this file are subject to the license and copyright --- detailed in the LICENSE and NOTICE files at the root of the source --- tree and available online at --- --- http://www.dspace.org/license/ --- - ------------------------------------------------------------------------------------ --- Create tables for Tabs/Boxes Configuration ------------------------------------------------------------------------------------ - -CREATE SEQUENCE cris_layout_box_id_seq; - -CREATE TABLE cris_layout_box -( - id INTEGER NOT NULL, - entity_id INTEGER NOT NULL, - type VARCHAR(255), - collapsed boolean NOT NULL, - priority INTEGER NOT NULL, - shortname VARCHAR(255), - header VARCHAR(255), - minor BOOLEAN NOT NULL, - security INTEGER, - style VARCHAR(255), - clear BOOLEAN, - CONSTRAINT cris_layout_box_pkey PRIMARY KEY (id), - CONSTRAINT cris_layout_box_shortname_key UNIQUE (shortname), - CONSTRAINT cris_layout_box_entity_id_fkey FOREIGN KEY (entity_id) - REFERENCES entity_type (id) -); - -CREATE TABLE cris_layout_box2securityfield -( - box_id INTEGER NOT NULL, - authorized_field_id INTEGER NOT NULL, - CONSTRAINT cris_layout_box2securityfield_box_id_fkey FOREIGN KEY (box_id) - REFERENCES cris_layout_box (id), - CONSTRAINT cris_layout_box2securityfield_field_id_fkey FOREIGN KEY (authorized_field_id) - REFERENCES metadatafieldregistry (metadata_field_id) -); - -CREATE SEQUENCE cris_layout_field_field_id_seq; - -CREATE TABLE cris_layout_field -( - field_id INTEGER NOT NULL, - metadata_field_id INTEGER NOT NULL, - bundle VARCHAR(255), - rendering VARCHAR(255), - row INTEGER NOT NULL, - priority INTEGER NOT NULL, - type VARCHAR(255), - label VARCHAR(255), - style VARCHAR(255), - CONSTRAINT cris_layout_field_pkey PRIMARY KEY (field_id), - CONSTRAINT cris_layout_box2metadata_metadata_field_id_fkey FOREIGN KEY (metadata_field_id) - REFERENCES metadatafieldregistry (metadata_field_id) -); - -CREATE TABLE cris_layout_box2field -( - cris_layout_box_id INTEGER NOT NULL, - cris_layout_field_id INTEGER NOT NULL, - CONSTRAINT cris_layout_box2field_field_id_fkey FOREIGN KEY (cris_layout_field_id) - REFERENCES cris_layout_field (field_id), - CONSTRAINT cris_layout_box2field_box_id_fkey FOREIGN KEY (cris_layout_box_id) - REFERENCES cris_layout_box (id) -); - -CREATE SEQUENCE cris_layout_fieldbitstream2metadata_fieldbitstream_id_seq; - -CREATE TABLE cris_layout_fieldbitstream2metadata -( - fieldbitstream_id INTEGER NOT NULL, - layout_field_id INTEGER NOT NULL, - metadata_field_id INTEGER NOT NULL, - bundle VARCHAR(255), - metadata_value VARCHAR(255), - CONSTRAINT cris_layout_fieldbitstream2metadata_pkey PRIMARY KEY (fieldbitstream_id), - CONSTRAINT cris_layout_fieldbitstream2metadata_layout_field_id_fkey FOREIGN KEY (layout_field_id) - REFERENCES cris_layout_field (field_id), - CONSTRAINT cris_layout_fieldbitstream2metadata_field_id_fkey FOREIGN KEY (metadata_field_id) - REFERENCES metadatafieldregistry (metadata_field_id) -); - -CREATE SEQUENCE cris_layout_tab_id_seq; - -CREATE TABLE cris_layout_tab -( - id INTEGER NOT NULL, - entity_id INTEGER NOT NULL, - priority INTEGER NOT NULL, - shortname VARCHAR(255), - header VARCHAR(255), - security INTEGER, - CONSTRAINT cris_layout_tab_pkey PRIMARY KEY (id), - CONSTRAINT cris_layout_tab_shortname_key UNIQUE (shortname), - CONSTRAINT cris_layout_tab_entity_id_fkey FOREIGN KEY (entity_id) - REFERENCES entity_type (id) -); - -CREATE TABLE cris_layout_tab2box -( - cris_layout_tab_id INTEGER NOT NULL, - cris_layout_box_id INTEGER NOT NULL, - CONSTRAINT cris_layout_tab2box_tab_id_fkey FOREIGN KEY (cris_layout_tab_id) - REFERENCES cris_layout_tab (id), - CONSTRAINT cris_layout_tab2box_box_id_fkey FOREIGN KEY (cris_layout_box_id) - REFERENCES cris_layout_box (id) -); - -CREATE TABLE cris_layout_tab2securityfield -( - tab_id INTEGER NOT NULL, - authorized_field_id INTEGER NOT NULL, - CONSTRAINT cris_layout_tab2securityfield_tab_id_fkey FOREIGN KEY (tab_id) - REFERENCES cris_layout_tab (id), - CONSTRAINT cris_layout_tab2securityfield_field_id_fkey FOREIGN KEY (authorized_field_id) - REFERENCES metadatafieldregistry (metadata_field_id) -); \ No newline at end of file diff --git a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2020.08.03__layout_refactoring.sql b/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2020.08.03__layout_refactoring.sql deleted file mode 100644 index b04a72994bb0..000000000000 --- a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2020.08.03__layout_refactoring.sql +++ /dev/null @@ -1,75 +0,0 @@ --- --- The contents of this file are subject to the license and copyright --- detailed in the LICENSE and NOTICE files at the root of the source --- tree and available online at --- --- http://www.dspace.org/license/ --- - --- -- --- Remove unique constraint on shortname of table cris_layout_tab. --- Now the shortname don't is unique because different entity types can have tabs with same shortname --- -- -ALTER TABLE cris_layout_tab DROP CONSTRAINT cris_layout_tab_shortname_key; - --- -- --- Remove unique constraint on shortname of table cris_layout_box. --- Now the shortname don't is unique because different entity types can have boxes with same shortname --- -- -ALTER TABLE cris_layout_box DROP CONSTRAINT cris_layout_box_shortname_key; - --- -- --- --- -- -ALTER TABLE cris_layout_tab ADD CONSTRAINT cris_layout_tab_entity_shortname_unique UNIQUE(entity_id, shortname); - --- -- --- --- -- -ALTER TABLE cris_layout_box ADD CONSTRAINT cris_layout_box_entity_shortname_unique UNIQUE(entity_id, shortname); - --- -- --- Add field position to join table cris_layout_box2field. This field is used to --- define the position of the field in the box --- -- --- ALTER TABLE cris_layout_box2field ADD COLUMN position INTEGER; - --- -- --- Remove the priority field from cris_layout_field. Now the position of the field --- in the box is defined by the field cris_layout_box2field.position --- -- --- ALTER TABLE cris_layout_field DROP COLUMN priority; - --- -- --- Add field position to join table cris_layout_tab2field. This field is used to --- define the position of the box in the tab --- -- -ALTER TABLE cris_layout_tab2box ADD COLUMN position INTEGER; - --- -- --- Remove the priority field from cris_layout_box. Now the position of the box --- in the tab is defined by the field cris_layout_tab2box.position --- -- -ALTER TABLE cris_layout_box DROP COLUMN priority; - -ALTER TABLE cris_layout_box2securityfield RENAME TO cris_layout_box2securitymetadata; - -ALTER TABLE cris_layout_tab2securityfield RENAME TO cris_layout_tab2securitymetadata; - -ALTER TABLE cris_layout_box2securitymetadata RENAME COLUMN authorized_field_id TO metadata_field_id; - -ALTER TABLE cris_layout_tab2securitymetadata RENAME COLUMN authorized_field_id TO metadata_field_id; - -ALTER TABLE cris_layout_box2securitymetadata ADD CONSTRAINT cris_layout_box2securitymetadata_pkey PRIMARY KEY (metadata_field_id, box_id); - -ALTER TABLE cris_layout_tab2securitymetadata ADD CONSTRAINT cris_layout_tab2securitymetadata_pkey PRIMARY KEY (metadata_field_id, tab_id); - -ALTER TABLE cris_layout_tab2box ADD CONSTRAINT cris_layout_tab2box_pkey PRIMARY KEY (cris_layout_tab_id, cris_layout_box_id); - -ALTER TABLE cris_layout_field ADD COLUMN box_id INTEGER; - -DROP TABLE cris_layout_box2field, cris_layout_fieldbitstream2metadata; - -ALTER TABLE cris_layout_field ADD CONSTRAINT cris_layout_field_box_fkey FOREIGN KEY (box_id) REFERENCES cris_layout_box (id); - -ALTER TABLE cris_layout_field ADD COLUMN metadata_value VARCHAR(255); \ No newline at end of file diff --git a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2020.08.27__layout_rendering_style.sql b/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2020.08.27__layout_rendering_style.sql deleted file mode 100644 index bd44a1f2c7ad..000000000000 --- a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2020.08.27__layout_rendering_style.sql +++ /dev/null @@ -1,11 +0,0 @@ --- --- The contents of this file are subject to the license and copyright --- detailed in the LICENSE and NOTICE files at the root of the source --- tree and available online at --- --- http://www.dspace.org/license/ --- - -ALTER TABLE cris_layout_field ADD COLUMN style_label VARCHAR(255); - -ALTER TABLE cris_layout_field ADD COLUMN style_value VARCHAR(255); \ No newline at end of file diff --git a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2020.09.09__orcid_queue_and_history.sql b/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2020.09.09__orcid_queue_and_history.sql deleted file mode 100644 index c13656c55766..000000000000 --- a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2020.09.09__orcid_queue_and_history.sql +++ /dev/null @@ -1,44 +0,0 @@ --- --- The contents of this file are subject to the license and copyright --- detailed in the LICENSE and NOTICE files at the root of the source --- tree and available online at --- --- http://www.dspace.org/license/ --- - ------------------------------------------------------------------------------------ --- Create tables for ORCID Queue and History ------------------------------------------------------------------------------------ - -CREATE SEQUENCE orcid_queue_id_seq; - -CREATE TABLE orcid_queue -( - id INTEGER NOT NULL, - owner_id RAW(16) NOT NULL, - entity_id RAW(16) NOT NULL, - CONSTRAINT orcid_queue_pkey PRIMARY KEY (id), - CONSTRAINT orcid_queue_owner_id_fkey FOREIGN KEY (owner_id) REFERENCES item (uuid), - CONSTRAINT orcid_queue_entity_id_fkey FOREIGN KEY (entity_id) REFERENCES item (uuid) -); - -CREATE INDEX orcid_queue_owner_id_index on orcid_queue(owner_id); - - -CREATE SEQUENCE orcid_history_id_seq; - -CREATE TABLE orcid_history -( - id INTEGER NOT NULL, - owner_id RAW(16) NOT NULL, - entity_id RAW(16) NOT NULL, - put_code VARCHAR(255), - timestamp_last_attempt TIMESTAMP, - timestamp_success_attempt TIMESTAMP, - response_message CLOB, - CONSTRAINT orcid_history_pkey PRIMARY KEY (id), - CONSTRAINT orcid_history_owner_id_fkey FOREIGN KEY (owner_id) REFERENCES item (uuid), - CONSTRAINT orcid_history_entity_id_fkey FOREIGN KEY (entity_id) REFERENCES item (uuid) -); - -CREATE INDEX orcid_history_owner_id_index on orcid_history(owner_id); \ No newline at end of file diff --git a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2020.09.16__orcid_history_add_status_column.sql b/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2020.09.16__orcid_history_add_status_column.sql deleted file mode 100644 index 0fb516e170b7..000000000000 --- a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2020.09.16__orcid_history_add_status_column.sql +++ /dev/null @@ -1,9 +0,0 @@ --- --- The contents of this file are subject to the license and copyright --- detailed in the LICENSE and NOTICE files at the root of the source --- tree and available online at --- --- http://www.dspace.org/license/ --- - -ALTER TABLE orcid_history ADD COLUMN status INTEGER; \ No newline at end of file diff --git a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2020.10.16__nbevent_processed.sql b/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2020.10.16__nbevent_processed.sql deleted file mode 100644 index 5cf9a0484f8d..000000000000 --- a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2020.10.16__nbevent_processed.sql +++ /dev/null @@ -1,19 +0,0 @@ --- --- The contents of this file are subject to the license and copyright --- detailed in the LICENSE and NOTICE files at the root of the source --- tree and available online at --- --- http://www.dspace.org/license/ --- - -CREATE TABLE nbevent_processed ( - nbevent_id VARCHAR(255) NOT NULL, - nbevent_timestamp TIMESTAMP NULL, - eperson_uuid UUID NULL, - item_uuid UUID NULL, - CONSTRAINT nbevent_pk PRIMARY KEY (nbevent_id), - CONSTRAINT eperson_uuid_fkey FOREIGN KEY (eperson_uuid) REFERENCES eperson (uuid), - CONSTRAINT item_uuid_fkey FOREIGN KEY (item_uuid) REFERENCES item (uuid) -); - -CREATE INDEX item_uuid_idx ON nbevent_processed(item_uuid); diff --git a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2020.11.10__drop_imp_record_to_item.sql b/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2020.11.10__drop_imp_record_to_item.sql deleted file mode 100644 index d70baf0f01f1..000000000000 --- a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2020.11.10__drop_imp_record_to_item.sql +++ /dev/null @@ -1,13 +0,0 @@ --- --- The contents of this file are subject to the license and copyright --- detailed in the LICENSE and NOTICE files at the root of the source --- tree and available online at --- --- http://www.dspace.org/license/ --- - ------------------------------------------------------------------------------------ --- Drop imp_record_to_item table. ------------------------------------------------------------------------------------ - -DROP TABLE imp_record_to_item; \ No newline at end of file diff --git a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2020.11.18__alter_column_harvested_item.sql b/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2020.11.18__alter_column_harvested_item.sql deleted file mode 100644 index 537a4546fba5..000000000000 --- a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2020.11.18__alter_column_harvested_item.sql +++ /dev/null @@ -1,13 +0,0 @@ --- --- The contents of this file are subject to the license and copyright --- detailed in the LICENSE and NOTICE files at the root of the source --- tree and available online at --- --- http://www.dspace.org/license/ --- - ------------------------------------------------------------------------------------ --- Drop imp_record_to_item table. ------------------------------------------------------------------------------------ - -ALTER TABLE harvested_item MODIFY oai_id VARCHAR(255); \ No newline at end of file diff --git a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2020.11.19__cris_metrics.sql b/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2020.11.19__cris_metrics.sql deleted file mode 100644 index 04431f371789..000000000000 --- a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2020.11.19__cris_metrics.sql +++ /dev/null @@ -1,43 +0,0 @@ --- --- The contents of this file are subject to the license and copyright --- detailed in the LICENSE and NOTICE files at the root of the source --- tree and available online at --- --- http://www.dspace.org/license/ --- - ------------------------------------------------------------------------------------ --- Create table for CrisMetrics ------------------------------------------------------------------------------------ - -CREATE SEQUENCE cris_metrics_seq; - -CREATE TABLE cris_metrics -( - id INTEGER NOT NULL, - metricType CHARACTER VARYING(255), - metricCount FLOAT, - acquisitionDate TIMESTAMP, - startDate TIMESTAMP, - endDate TIMESTAMP, - resource_id UUID NOT NULL, - last BOOLEAN, - remark TEXT, - CONSTRAINT cris_metrics_pkey PRIMARY KEY (id), - CONSTRAINT cris_metrics_resource_id_fkey FOREIGN KEY (resource_id) REFERENCES item (uuid) -); - -CREATE INDEX metrics_last_idx -ON public.cris_metrics -USING btree -(last); - -CREATE INDEX metrics_uuid_idx -ON public.cris_metrics -USING btree -(resource_id); - -CREATE INDEX metric_bid_idx -ON public.cris_metrics -USING btree -(resource_id, metricType COLLATE pg_catalog."default"); \ No newline at end of file diff --git a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2020.12.01__cris_metrics_add_new_column.sql b/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2020.12.01__cris_metrics_add_new_column.sql deleted file mode 100644 index 8468bbae7d4c..000000000000 --- a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2020.12.01__cris_metrics_add_new_column.sql +++ /dev/null @@ -1,17 +0,0 @@ --- --- The contents of this file are subject to the license and copyright --- detailed in the LICENSE and NOTICE files at the root of the source --- tree and available online at --- --- http://www.dspace.org/license/ --- - ------------------------------------------------------------------------------------ --- Update table CrisMetrics ------------------------------------------------------------------------------------ - -ALTER TABLE cris_metrics ADD COLUMN deltaPeriod1 FLOAT; - -ALTER TABLE cris_metrics ADD COLUMN deltaPeriod2 FLOAT; - -ALTER TABLE cris_metrics ADD COLUMN rank FLOAT; diff --git a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2020.12.08__cris_layout_metric_2_box.sql b/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2020.12.08__cris_layout_metric_2_box.sql deleted file mode 100644 index cbebc8e2a2ff..000000000000 --- a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2020.12.08__cris_layout_metric_2_box.sql +++ /dev/null @@ -1,24 +0,0 @@ --- --- The contents of this file are subject to the license and copyright --- detailed in the LICENSE and NOTICE files at the root of the source --- tree and available online at --- --- http://www.dspace.org/license/ --- - ------------------------------------------------------------------------------------ --- Metric 2 Box Table ------------------------------------------------------------------------------------ - -CREATE TABLE cris_layout_metric2box -( - metric_type CHARACTER VARYING(255) NOT NULL, - cris_layout_box_id INTEGER NOT NULL, - position INTEGER NOT NULL, - CONSTRAINT cris_layout_metric2box_pkey PRIMARY KEY (cris_layout_box_id, metric_type), - CONSTRAINT cris_layout_box2metric_box_id_fkey FOREIGN KEY (cris_layout_box_id) - REFERENCES cris_layout_box (id) -); - -ALTER TABLE cris_layout_box ADD COLUMN max_columns INTEGER; - diff --git a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2020.12.09__cris_metrics_performance-fix.sql b/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2020.12.09__cris_metrics_performance-fix.sql deleted file mode 100644 index f0f3f178fcf1..000000000000 --- a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2020.12.09__cris_metrics_performance-fix.sql +++ /dev/null @@ -1,12 +0,0 @@ --- --- The contents of this file are subject to the license and copyright --- detailed in the LICENSE and NOTICE files at the root of the source --- tree and available online at --- --- http://www.dspace.org/license/ --- - ------------------------------------------------------------------------------------ - -ALTER TABLE cris_metrics DROP CONSTRAINT cris_metrics_resource_id_fkey; -ALTER TABLE cris_metrics ADD CONSTRAINT cris_metrics_resource_id_fkey FOREIGN KEY (resource_id) REFERENCES item ON DELETE CASCADE; diff --git a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2021.01.01__cris_layout_metric_2_box_id.sql b/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2021.01.01__cris_layout_metric_2_box_id.sql deleted file mode 100644 index 8f2d72889814..000000000000 --- a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2021.01.01__cris_layout_metric_2_box_id.sql +++ /dev/null @@ -1,14 +0,0 @@ --- --- The contents of this file are subject to the license and copyright --- detailed in the LICENSE and NOTICE files at the root of the source --- tree and available online at --- --- http://www.dspace.org/license/ --- - ------------------------------------------------------------------------------------ -CREATE SEQUENCE cris_layout_metric2box_id_seq; -DELETE FROM cris_layout_metric2box; -ALTER TABLE cris_layout_metric2box DROP CONSTRAINT cris_layout_metric2box_pkey; -ALTER TABLE cris_layout_metric2box ADD COLUMN id integer NOT NULL; -ALTER TABLE cris_layout_metric2box ADD CONSTRAINT cris_layout_metric2box_pkey PRIMARY KEY (id); diff --git a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2021.02.03__registration_data_group.sql b/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2021.02.03__registration_data_group.sql deleted file mode 100644 index ea9db0e6c344..000000000000 --- a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2021.02.03__registration_data_group.sql +++ /dev/null @@ -1,17 +0,0 @@ --- --- The contents of this file are subject to the license and copyright --- detailed in the LICENSE and NOTICE files at the root of the source --- tree and available online at --- --- http://www.dspace.org/license/ --- - -------------------------------------------------------------------------------- --- Sequences for RegistrationData within Group feature -------------------------------------------------------------------------------- - -CREATE TABLE RegistrationData2Group -( - registrationdata_id INTEGER REFERENCES RegistrationData(registrationdata_id), - group_id UUID REFERENCES epersongroup (uuid) ON DELETE CASCADE -); \ No newline at end of file diff --git a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2021.03.25__layout_nested.sql b/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2021.03.25__layout_nested.sql deleted file mode 100644 index f8123bc41325..000000000000 --- a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2021.03.25__layout_nested.sql +++ /dev/null @@ -1,29 +0,0 @@ --- --- The contents of this file are subject to the license and copyright --- detailed in the LICENSE and NOTICE files at the root of the source --- tree and available online at --- --- http://www.dspace.org/license/ --- - -------------------------------------------------------------------------------- --- Sequences for RegistrationData within Group feature -------------------------------------------------------------------------------- - -CREATE SEQUENCE cris_layout_field_nested_id_seq; -CREATE TABLE cris_layout_field2nested -( - nested_field_id INTEGER NOT NULL, - rendering VARCHAR(255), - priority INTEGER NOT NULL, - label VARCHAR(255), - style VARCHAR(255), - style_label VARCHAR(255), - style_value VARCHAR(255), - metadata_field_id INTEGER NOT NULL, - field_id INTEGER NOT NULL, - CONSTRAINT cris_layout_field2nested_pkey PRIMARY KEY (nested_field_id), - CONSTRAINT cris_layout_field2nested_metadatafieldregistry_fkey FOREIGN KEY (metadata_field_id) - REFERENCES metadatafieldregistry (metadata_field_id), - CONSTRAINT cris_layout_field2nested_cris_layout_field_fkey FOREIGN KEY (field_id) REFERENCES cris_layout_field (field_id) -); \ No newline at end of file diff --git a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2021.03.26__process_to_group.sql b/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2021.03.26__process_to_group.sql deleted file mode 100644 index c7cfdd84d551..000000000000 --- a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2021.03.26__process_to_group.sql +++ /dev/null @@ -1,17 +0,0 @@ --- --- The contents of this file are subject to the license and copyright --- detailed in the LICENSE and NOTICE files at the root of the source --- tree and available online at --- --- http://www.dspace.org/license/ --- - -------------------------------------------------------------------------------- --- Sequences for Process within Group feature -------------------------------------------------------------------------------- - -CREATE TABLE Process2Group -( - process_id INTEGER REFERENCES Process(process_id), - group_id UUID REFERENCES epersongroup (uuid) ON DELETE CASCADE -); \ No newline at end of file diff --git a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2021.03.30__cleanup_dspace-cris_migration_pre-7.0.sql b/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2021.03.30__cleanup_dspace-cris_migration_pre-7.0.sql deleted file mode 100644 index 07ac915e368f..000000000000 --- a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2021.03.30__cleanup_dspace-cris_migration_pre-7.0.sql +++ /dev/null @@ -1,13 +0,0 @@ --- --- The contents of this file are subject to the license and copyright --- detailed in the LICENSE and NOTICE files at the root of the source --- tree and available online at --- --- http://www.dspace.org/license/ --- - -CREATE TABLE bkp_schema_version -AS SELECT * FROM schema_version; - -DELETE FROM schema_version -where version not like '7%' and LOWER(description) like '%cris%'; \ No newline at end of file diff --git a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2021.04.21__orcid_history_and_orcid_queue_refactoring.sql b/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2021.04.21__orcid_history_and_orcid_queue_refactoring.sql deleted file mode 100644 index 4ef3c7ff077c..000000000000 --- a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2021.04.21__orcid_history_and_orcid_queue_refactoring.sql +++ /dev/null @@ -1,24 +0,0 @@ --- --- The contents of this file are subject to the license and copyright --- detailed in the LICENSE and NOTICE files at the root of the source --- tree and available online at --- --- http://www.dspace.org/license/ --- - -ALTER TABLE orcid_queue ADD COLUMN put_code VARCHAR(255); -ALTER TABLE orcid_queue ADD COLUMN record_type VARCHAR(255); -ALTER TABLE orcid_queue ADD COLUMN description VARCHAR(255); -ALTER TABLE orcid_queue ADD COLUMN operation VARCHAR(255); -ALTER TABLE orcid_queue ADD COLUMN metadata CLOB; - -ALTER TABLE orcid_queue MODIFY (entity_id null); - -ALTER TABLE orcid_history ADD COLUMN metadata CLOB; -ALTER TABLE orcid_history ADD COLUMN operation VARCHAR(255); -ALTER TABLE orcid_history ADD COLUMN record_type VARCHAR(255); -ALTER TABLE orcid_history ADD COLUMN description VARCHAR(255); - -ALTER TABLE orcid_history DROP COLUMN timestamp_success_attempt; - -ALTER TABLE orcid_history MODIFY (entity_id null); \ No newline at end of file diff --git a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2021.05.05__orcid_queue_add_attempts_column.sql b/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2021.05.05__orcid_queue_add_attempts_column.sql deleted file mode 100644 index d36103e9d0ba..000000000000 --- a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2021.05.05__orcid_queue_add_attempts_column.sql +++ /dev/null @@ -1,9 +0,0 @@ --- --- The contents of this file are subject to the license and copyright --- detailed in the LICENSE and NOTICE files at the root of the source --- tree and available online at --- --- http://www.dspace.org/license/ --- - -ALTER TABLE orcid_queue ADD COLUMN attempts INTEGER; \ No newline at end of file diff --git a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2021.05.24__cris_layoutfield_null_metadata.sql b/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2021.05.24__cris_layoutfield_null_metadata.sql deleted file mode 100644 index 89cb19e117a1..000000000000 --- a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2021.05.24__cris_layoutfield_null_metadata.sql +++ /dev/null @@ -1,9 +0,0 @@ --- --- The contents of this file are subject to the license and copyright --- detailed in the LICENSE and NOTICE files at the root of the source --- tree and available online at --- --- http://www.dspace.org/license/ --- - -ALTER TABLE cris_layout_field ALTER COLUMN metadata_field_id DROP NOT NULL; \ No newline at end of file diff --git a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2021.05.31__alter_columns_left_right_entity_type.sql b/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2021.05.31__alter_columns_left_right_entity_type.sql deleted file mode 100644 index 973706e9576c..000000000000 --- a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2021.05.31__alter_columns_left_right_entity_type.sql +++ /dev/null @@ -1,14 +0,0 @@ --- --- The contents of this file are subject to the license and copyright --- detailed in the LICENSE and NOTICE files at the root of the source --- tree and available online at --- --- http://www.dspace.org/license/ --- - ------------------------------------------------------------------------------------ --- Drop imp_record_to_item table. ------------------------------------------------------------------------------------ - -ALTER TABLE relationship_type MODIFY (right_type NULL); -ALTER TABLE relationship_type MODIFY (left_type NULL); diff --git a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2021.06.24__add_columns_security_level_metadata_value.sql b/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2021.06.24__add_columns_security_level_metadata_value.sql deleted file mode 100644 index 53bbe67155e7..000000000000 --- a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2021.06.24__add_columns_security_level_metadata_value.sql +++ /dev/null @@ -1,14 +0,0 @@ --- --- The contents of this file are subject to the license and copyright --- detailed in the LICENSE and NOTICE files at the root of the source --- tree and available online at --- --- http://www.dspace.org/license/ --- - ------------------------------------------------------------------------------------ --- ADD field security_level into metadatavalue table. ------------------------------------------------------------------------------------ - - -ALTER TABLE metadatavalue ADD COLUMN security_level INTEGER diff --git a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2021.07.22__add_columns_security_level_to_imp_metadatavalue.sql b/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2021.07.22__add_columns_security_level_to_imp_metadatavalue.sql deleted file mode 100644 index 952795bbcb70..000000000000 --- a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2021.07.22__add_columns_security_level_to_imp_metadatavalue.sql +++ /dev/null @@ -1,14 +0,0 @@ --- --- The contents of this file are subject to the license and copyright --- detailed in the LICENSE and NOTICE files at the root of the source --- tree and available online at --- --- http://www.dspace.org/license/ --- - ------------------------------------------------------------------------------------ --- ADD field security_level into imp_metadatavalue table. ------------------------------------------------------------------------------------ - - -ALTER TABLE imp_metadatavalue ADD COLUMN security_level INTEGER diff --git a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2021.07.30__add_table_subscriptionparamter_change_columns_subscription_table.sql b/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2021.07.30__add_table_subscriptionparamter_change_columns_subscription_table.sql deleted file mode 100644 index 8db385f5acf4..000000000000 --- a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2021.07.30__add_table_subscriptionparamter_change_columns_subscription_table.sql +++ /dev/null @@ -1,41 +0,0 @@ --- --- The contents of this file are subject to the license and copyright --- detailed in the LICENSE and NOTICE files at the root of the source --- tree and available online at --- --- http://www.dspace.org/license/ --- - ------------------------------------------------------------------------------------ --- ADD table subscription_parameter ------------------------------------------------------------------------------------ - - -CREATE SEQUENCE subscription_parameter_seq; ------------------------------------------------------------------------------------ --- ADD table subscription_parameter ------------------------------------------------------------------------------------ -CREATE TABLE subscription_parameter -( - subscription_parameter_id INTEGER NOT NULL, - name VARCHAR(255), - value VARCHAR(255), - subscription_id INTEGER NOT NULL, - CONSTRAINT subscription_parameter_pkey PRIMARY KEY (subscription_parameter_id), - CONSTRAINT subscription_parameter_subscription_fkey FOREIGN KEY (subscription_id) - REFERENCES subscription (subscription_id) ON DELETE CASCADE -); --- -- -ALTER TABLE subscription DROP CONSTRAINT subscription_collection_id_fkey; ----- -- -ALTER TABLE subscription DROP COLUMN collection_id; --- -ALTER TABLE subscription ADD COLUMN dspace_object_id UUID; ----- -- -ALTER TABLE subscription ADD COLUMN type CHARACTER VARYING(255); - -ALTER TABLE subscription ADD CONSTRAINT subscription_dspaceobject_fkey FOREIGN KEY (dspace_object_id) REFERENCES dspaceobject (uuid); --- - - - diff --git a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2021.09.03__alter_table_crismetrics_change_column_resource.sql b/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2021.09.03__alter_table_crismetrics_change_column_resource.sql deleted file mode 100644 index 07ec2c47e773..000000000000 --- a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2021.09.03__alter_table_crismetrics_change_column_resource.sql +++ /dev/null @@ -1,16 +0,0 @@ --- --- The contents of this file are subject to the license and copyright --- detailed in the LICENSE and NOTICE files at the root of the source --- tree and available online at --- --- http://www.dspace.org/license/ --- - -------------------------------------------------------------------------------------- ----- UPDATE table cris_metrics -------------------------------------------------------------------------------------- - -ALTER TABLE cris_metrics DROP CONSTRAINT cris_metrics_resource_id_fkey; - -ALTER TABLE cris_metrics ADD CONSTRAINT cris_metrics_resource_id_fkey FOREIGN KEY (resource_id) REFERENCES dspaceobject (uuid); - diff --git a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2021.10.03__update_metadatavalue_table_set_metadata_field_id.sql b/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2021.10.03__update_metadatavalue_table_set_metadata_field_id.sql deleted file mode 100644 index 81aa5d07da7e..000000000000 --- a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2021.10.03__update_metadatavalue_table_set_metadata_field_id.sql +++ /dev/null @@ -1,18 +0,0 @@ --- --- The contents of this file are subject to the license and copyright --- detailed in the LICENSE and NOTICE files at the root of the source --- tree and available online at --- --- http://www.dspace.org/license/ --- - -------------------------------------------------------------------------------------- ----- UPDATE table metadatavalue -------------------------------------------------------------------------------------- - -UPDATE metadatavalue SET metadata_field_id = ( - SELECT metadata_field_id - FROM metadatafieldregistry mfr LEFT JOIN metadataschemaregistry msr - ON mfr.metadata_schema_id = msr.metadata_schema_id - WHERE msr.short_id = 'dspace' AND mfr.element = 'entity' AND mfr.qualifier = 'type') -WHERE metadata_field_id is null and text_value = 'Publication'; \ No newline at end of file diff --git a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2021.11.05__delete_tab2box_alter_tables_tab_box_create_tables_cell_row.sql b/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2021.11.05__delete_tab2box_alter_tables_tab_box_create_tables_cell_row.sql deleted file mode 100644 index 627f4b232f79..000000000000 --- a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2021.11.05__delete_tab2box_alter_tables_tab_box_create_tables_cell_row.sql +++ /dev/null @@ -1,74 +0,0 @@ --- --- The contents of this file are subject to the license and copyright --- detailed in the LICENSE and NOTICE files at the root of the source --- tree and available online at --- --- http://www.dspace.org/license/ --- - -------------------------------------------------------------------------------------- ----- CREATE table cris_layout_row -------------------------------------------------------------------------------------- - -CREATE SEQUENCE cris_layout_row_id_seq; -CREATE TABLE cris_layout_row -( - id INTEGER NOT NULL, - style CHARACTER VARYING(255), - tab INTEGER NOT NULL, - position INTEGER, - - CONSTRAINT cris_layout_row_pkey PRIMARY KEY (id), - CONSTRAINT cris_layout_tab_fkey FOREIGN KEY (tab) REFERENCES cris_layout_tab (id) -); - -------------------------------------------------------------------------------------- ----- CREATE table cris_layout_cell -------------------------------------------------------------------------------------- - -CREATE SEQUENCE cris_layout_cell_id_seq; -CREATE TABLE cris_layout_cell -( - id INTEGER NOT NULL, - style CHARACTER VARYING(255), - row INTEGER NOT NULL, - position INTEGER, - - CONSTRAINT cris_layout_cell_pkey PRIMARY KEY (id), - CONSTRAINT cris_layout_row_fkey FOREIGN KEY (row) REFERENCES cris_layout_row (id) -); - -------------------------------------------------------------------------------------- ----- CREATE table cris_layout_tab2box -------------------------------------------------------------------------------------- -DROP TABLE cris_layout_tab2box; - -------------------------------------------------------------------------------------- ----- ALTER table cris_layout_box -------------------------------------------------------------------------------------- - -ALTER TABLE cris_layout_box DROP COLUMN clear; -ALTER TABLE cris_layout_box ADD COLUMN cell INTEGER; -ALTER TABLE cris_layout_box ADD COLUMN position INTEGER; -ALTER TABLE cris_layout_box ADD COLUMN container BOOLEAN; -ALTER TABLE cris_layout_box ADD CONSTRAINT cris_layout_cell_id_fk FOREIGN KEY (cell) REFERENCES cris_layout_cell; - -------------------------------------------------------------------------------------- ----- ALTER table cris_layout_tab -------------------------------------------------------------------------------------- - -ALTER TABLE cris_layout_tab ADD COLUMN is_leading BOOLEAN; - -------------------------------------------------------------------------------------- ----- ALTER table cris_layout_field -------------------------------------------------------------------------------------- - -ALTER TABLE cris_layout_field ADD COLUMN label_as_heading BOOLEAN; -ALTER TABLE cris_layout_field ADD COLUMN values_inline BOOLEAN; - -------------------------------------------------------------------------------------- ----- ALTER table cris_layout_field2nested -------------------------------------------------------------------------------------- - -ALTER TABLE cris_layout_field2nested ADD COLUMN label_as_heading BOOLEAN; -ALTER TABLE cris_layout_field2nested ADD COLUMN values_inline BOOLEAN; \ No newline at end of file diff --git a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2021.11.17__drop_cris_layout_box_entity_shortname_unique_constraint.sql b/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2021.11.17__drop_cris_layout_box_entity_shortname_unique_constraint.sql deleted file mode 100644 index d7ba348ebe9a..000000000000 --- a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2021.11.17__drop_cris_layout_box_entity_shortname_unique_constraint.sql +++ /dev/null @@ -1,9 +0,0 @@ --- --- The contents of this file are subject to the license and copyright --- detailed in the LICENSE and NOTICE files at the root of the source --- tree and available online at --- --- http://www.dspace.org/license/ --- - -ALTER TABLE cris_layout_box DROP CONSTRAINT cris_layout_box_entity_shortname_unique; \ No newline at end of file diff --git a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2021.11.25__alter_process_table_drop_not_null_userid.sql b/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2021.11.25__alter_process_table_drop_not_null_userid.sql deleted file mode 100644 index 357203a2a765..000000000000 --- a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2021.11.25__alter_process_table_drop_not_null_userid.sql +++ /dev/null @@ -1,13 +0,0 @@ --- --- The contents of this file are subject to the license and copyright --- detailed in the LICENSE and NOTICE files at the root of the source --- tree and available online at --- --- http://www.dspace.org/license/ --- - ------------------------------------------------------------------------------------ --- Alter Process table. ------------------------------------------------------------------------------------ - -ALTER TABLE process ALTER COLUMN user_id DROP NOT NULL; \ No newline at end of file diff --git a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2021.11.26__alter_cris_layout_field.sql b/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2021.11.26__alter_cris_layout_field.sql deleted file mode 100644 index 022a6486ee41..000000000000 --- a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.0_2021.11.26__alter_cris_layout_field.sql +++ /dev/null @@ -1,23 +0,0 @@ --- --- The contents of this file are subject to the license and copyright --- detailed in the LICENSE and NOTICE files at the root of the source --- tree and available online at --- --- http://www.dspace.org/license/ --- - -------------------------------------------------------------------------------------- ----- ALTER table cris_layout_field -------------------------------------------------------------------------------------- - -ALTER TABLE cris_layout_field DROP COLUMN style; -ALTER TABLE cris_layout_field ADD COLUMN row_style VARCHAR(255); -ALTER TABLE cris_layout_field ADD COLUMN cell_style VARCHAR(255); -ALTER TABLE cris_layout_field ADD COLUMN cell INTEGER NOT NULL DEFAULT 0; - -------------------------------------------------------------------------------------- ----- ALTER table cris_layout_field2nested -------------------------------------------------------------------------------------- - -ALTER TABLE cris_layout_field2nested DROP COLUMN label_as_heading; -ALTER TABLE cris_layout_field2nested DROP COLUMN values_inline; \ No newline at end of file diff --git a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.2_2022.05.06__cris_layout_box_2_security_group.sql b/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.2_2022.05.06__cris_layout_box_2_security_group.sql deleted file mode 100644 index 389768fa5668..000000000000 --- a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.2_2022.05.06__cris_layout_box_2_security_group.sql +++ /dev/null @@ -1,17 +0,0 @@ -tab-- --- The contents of this file are subject to the license and copyright --- detailed in the LICENSE and NOTICE files at the root of the source --- tree and available online at --- --- http://www.dspace.org/license/ --- - ------------------------------------------------------------------------------------ -CREATE TABLE if not exists cris_layout_box2securitygroup -( - box_id integer NOT NULL, - group_id uuid NOT NULL, - CONSTRAINT cris_layout_box2securitygroup_pkey PRIMARY KEY (box_id, group_id), - CONSTRAINT cris_layout_box2securitygroup_box_id FOREIGN KEY (box_id) REFERENCES cris_layout_box (id), - CONSTRAINT cris_layout_box2securitygroup_group_id FOREIGN KEY (group_id) REFERENCES epersongroup (uuid) -); \ No newline at end of file diff --git a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.2_2022.05.08__cris_layout_tab_2_security_group.sql b/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.2_2022.05.08__cris_layout_tab_2_security_group.sql deleted file mode 100644 index c54fbb3c3159..000000000000 --- a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.2_2022.05.08__cris_layout_tab_2_security_group.sql +++ /dev/null @@ -1,17 +0,0 @@ --- --- The contents of this file are subject to the license and copyright --- detailed in the LICENSE and NOTICE files at the root of the source --- tree and available online at --- --- http://www.dspace.org/license/ --- - ------------------------------------------------------------------------------------ -CREATE TABLE if not exists cris_layout_tab2securitygroup -( - tab_id integer NOT NULL, - group_id uuid NOT NULL, - CONSTRAINT cris_layout_tab2securitygroup_pkey PRIMARY KEY (tab_id, group_id), - CONSTRAINT cris_layout_tab2securitygroup_tab_id FOREIGN KEY (tab_id) REFERENCES cris_layout_tab (id), - CONSTRAINT cris_layout_tab2securitygroup_group_id FOREIGN KEY (group_id) REFERENCES epersongroup (uuid) -); \ No newline at end of file diff --git a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.2_2022.08.23__add_machine_salt.sql b/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.2_2022.08.23__add_machine_salt.sql deleted file mode 100644 index 926b53bc1fa7..000000000000 --- a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.2_2022.08.23__add_machine_salt.sql +++ /dev/null @@ -1,20 +0,0 @@ --- --- The contents of this file are subject to the license and copyright --- detailed in the LICENSE and NOTICE files at the root of the source --- tree and available online at --- --- http://www.dspace.org/license/ --- - --- =============================================================== --- WARNING WARNING WARNING WARNING WARNING WARNING WARNING WARNING --- --- DO NOT MANUALLY RUN THIS DATABASE MIGRATION. IT WILL BE EXECUTED --- AUTOMATICALLY (IF NEEDED) BY "FLYWAY" WHEN YOU STARTUP DSPACE. --- http://flywaydb.org/ --- =============================================================== - ------------------------------------------------------------------------------------------------------------- --- This adds an extra column to the eperson table where we save a machine salt for stateless authentication ------------------------------------------------------------------------------------------------------------- -ALTER TABLE eperson ADD machine_salt varchar(32); \ No newline at end of file diff --git a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.3_2022.06.16__process_to_group.sql b/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.3_2022.06.16__process_to_group.sql deleted file mode 100644 index 5ebd41a866d0..000000000000 --- a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.3_2022.06.16__process_to_group.sql +++ /dev/null @@ -1,15 +0,0 @@ --- --- The contents of this file are subject to the license and copyright --- detailed in the LICENSE and NOTICE files at the root of the source --- tree and available online at --- --- http://www.dspace.org/license/ --- - --- =============================================================== --- WARNING WARNING WARNING WARNING WARNING WARNING WARNING WARNING --- --- DO NOT MANUALLY RUN THIS DATABASE MIGRATION. IT WILL BE EXECUTED --- AUTOMATICALLY (IF NEEDED) BY "FLYWAY" WHEN YOU STARTUP DSPACE. --- http://flywaydb.org/ --- =============================================================== diff --git a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.4_2023.05.10__add_sequences_DBMSImportFramework.sql b/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.4_2023.05.10__add_sequences_DBMSImportFramework.sql deleted file mode 100644 index 148a786d6169..000000000000 --- a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.4_2023.05.10__add_sequences_DBMSImportFramework.sql +++ /dev/null @@ -1,20 +0,0 @@ --- --- The contents of this file are subject to the license and copyright --- detailed in the LICENSE and NOTICE files at the root of the source --- tree and available online at --- --- http://www.dspace.org/license/ --- - ------------------------------------------------------------------------------------ --- Create sequences for DBMS Import framework ------------------------------------------------------------------------------------ - -CREATE SEQUENCE IF NOT EXISTS imp_bitstream_metadatavalue_seq; - -CREATE SEQUENCE IF NOT EXISTS imp_bitstream_seq; - -CREATE SEQUENCE IF NOT EXISTS imp_metadatavalue_seq; - -CREATE SEQUENCE IF NOT EXISTS imp_record_seq; - diff --git a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.6_2023.10.23__add_custom_filter.sql b/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.6_2023.10.23__add_custom_filter.sql deleted file mode 100644 index 369bd14f7064..000000000000 --- a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.6_2023.10.23__add_custom_filter.sql +++ /dev/null @@ -1,17 +0,0 @@ --- --- The contents of this file are subject to the license and copyright --- detailed in the LICENSE and NOTICE files at the root of the source --- tree and available online at --- --- http://www.dspace.org/license/ --- - --- =============================================================== --- WARNING WARNING WARNING WARNING WARNING WARNING WARNING WARNING --- --- DO NOT MANUALLY RUN THIS DATABASE MIGRATION. IT WILL BE EXECUTED --- AUTOMATICALLY (IF NEEDED) BY "FLYWAY" WHEN YOU STARTUP DSPACE. --- http://flywaydb.org/ --- =============================================================== - -ALTER TABLE cris_layout_tab ADD IF NOT EXISTS custom_filter varchar(255); \ No newline at end of file diff --git a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.6_2023.10.28__update_cris_layout_tab_constraint.sql b/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.6_2023.10.28__update_cris_layout_tab_constraint.sql deleted file mode 100644 index 6ea435bfeed2..000000000000 --- a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.6_2023.10.28__update_cris_layout_tab_constraint.sql +++ /dev/null @@ -1,18 +0,0 @@ --- --- The contents of this file are subject to the license and copyright --- detailed in the LICENSE and NOTICE files at the root of the source --- tree and available online at --- --- http://www.dspace.org/license/ --- - --- -- --- Remove unique constraint on entity_id and shortname of table cris_layout_tab. --- Now the entity_id and shortname aren't unique because entity_type can have custom_filter in it --- -- -ALTER TABLE cris_layout_tab DROP CONSTRAINT cris_layout_tab_entity_shortname_unique; - --- -- --- --- -- -ALTER TABLE cris_layout_tab ADD CONSTRAINT cris_layout_tab_entity_shortname_custom_filter_unique UNIQUE(entity_id, shortname, custom_filter); \ No newline at end of file diff --git a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.6_2023.12.12__add_alternative_tab_id_to_cris_layout_tab2securitygroup.sql b/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.6_2023.12.12__add_alternative_tab_id_to_cris_layout_tab2securitygroup.sql deleted file mode 100644 index 6ae50fb29bf6..000000000000 --- a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.6_2023.12.12__add_alternative_tab_id_to_cris_layout_tab2securitygroup.sql +++ /dev/null @@ -1,14 +0,0 @@ --- --- The contents of this file are subject to the license and copyright --- detailed in the LICENSE and NOTICE files at the root of the source --- tree and available online at --- --- http://www.dspace.org/license/ --- - ------------------------------------------------------------------------------------ --- Alter TABLE cris_layout_tab2securitygroup ADD alternative_tab_id ------------------------------------------------------------------------------------ - -ALTER TABLE cris_layout_tab2securitygroup ADD COLUMN alternative_tab_id INTEGER; -ALTER TABLE cris_layout_tab2securitygroup ADD CONSTRAINT cris_layout_tab2securitygroup_tab_id2 FOREIGN KEY (alternative_tab_id) REFERENCES cris_layout_tab (id) ON DELETE SET NULL; \ No newline at end of file diff --git a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.6_2023.12.13__add_alternative_box_id_to_cris_layout_box2securitygroup.sql b/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.6_2023.12.13__add_alternative_box_id_to_cris_layout_box2securitygroup.sql deleted file mode 100644 index 38360bb13cd8..000000000000 --- a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/oracle/V7.6_2023.12.13__add_alternative_box_id_to_cris_layout_box2securitygroup.sql +++ /dev/null @@ -1,14 +0,0 @@ --- --- The contents of this file are subject to the license and copyright --- detailed in the LICENSE and NOTICE files at the root of the source --- tree and available online at --- --- http://www.dspace.org/license/ --- - ------------------------------------------------------------------------------------ --- Alter TABLE cris_layout_box2securitygroup ADD alternative_box_id ------------------------------------------------------------------------------------ - -ALTER TABLE cris_layout_box2securitygroup ADD COLUMN alternative_box_id INTEGER; -ALTER TABLE cris_layout_box2securitygroup ADD CONSTRAINT cris_layout_box2securitygroup_box_id2 FOREIGN KEY (alternative_box_id) REFERENCES cris_layout_box (id) ON DELETE SET NULL; \ No newline at end of file diff --git a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/postgres/V7.6_2024.03.07__create_table_items_for_update.sql b/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/postgres/V7.6_2024.07.03__create_table_items_for_update.sql similarity index 100% rename from dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/postgres/V7.6_2024.03.07__create_table_items_for_update.sql rename to dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/postgres/V7.6_2024.07.03__create_table_items_for_update.sql From 8aba927126e34edb57b721a7027915e185becfd6 Mon Sep 17 00:00:00 2001 From: Andrea Bollini Date: Sun, 8 Sep 2024 22:42:56 +0200 Subject: [PATCH 06/35] DSC-1848 update xmlgraphics dependencies add exclusion to make eclipse happy --- dspace-api/pom.xml | 38 +++++++++++++++++++++++--------------- pom.xml | 2 +- 2 files changed, 24 insertions(+), 16 deletions(-) diff --git a/dspace-api/pom.xml b/dspace-api/pom.xml index 2f899c1df3d7..846443f5e24e 100644 --- a/dspace-api/pom.xml +++ b/dspace-api/pom.xml @@ -633,7 +633,7 @@ dnsjava dnsjava - 2.1.9 + 3.6.0 @@ -825,22 +825,30 @@ - org.apache.xmlgraphics - fop - 2.5 - - - javax.servlet - servlet-api - + org.apache.xmlgraphics + fop + 2.9 + + + javax.servlet + servlet-api + + + xml-apis + xml-apis + + + xml-apis + xml-apis-ext + - + - - org.apache.xmlgraphics - fop-pdf-images - 2.5 - + + org.apache.xmlgraphics + fop-pdf-images + 2.9 + de.undercouch diff --git a/pom.xml b/pom.xml index e1a2eebc5d6c..8ff23e46e6b3 100644 --- a/pom.xml +++ b/pom.xml @@ -2050,7 +2050,7 @@ org.apache.xmlgraphics xmlgraphics-commons - 2.6 + 2.9 From aa77cb62543987ad559e5486d0c35bc86c6bbe67 Mon Sep 17 00:00:00 2001 From: Vincenzo Mecca Date: Tue, 24 Sep 2024 16:44:11 +0200 Subject: [PATCH 07/35] [DSC-1848] Adds bitstream cors property --- dspace/config/modules/rest.cfg | 2 ++ 1 file changed, 2 insertions(+) diff --git a/dspace/config/modules/rest.cfg b/dspace/config/modules/rest.cfg index fadebecbb64f..f009d1f89515 100644 --- a/dspace/config/modules/rest.cfg +++ b/dspace/config/modules/rest.cfg @@ -10,6 +10,8 @@ # (Requires reboot of servlet container, e.g. Tomcat, to reload) rest.cors.allowed-origins = ${dspace.ui.url} +rest.cors.bitstream-allowed-origins = ${dspace.ui.url} + # Whether or not to allow credentials (e.g. cookies) sent by the client/browser in CORS # requests (in "Access-Control-Allow-Credentials" header). # For DSpace, we default this to "true" to support external authentication via Shibboleth (and similar). From 6376ddc6afb9f428b0e83c43bea165c3131aa2d4 Mon Sep 17 00:00:00 2001 From: Vincenzo Mecca Date: Wed, 25 Sep 2024 11:15:55 +0200 Subject: [PATCH 08/35] [DSC-1848] Fixes OpenSearchControllerIT --- .../main/java/org/dspace/app/rest/utils/ScopeResolver.java | 4 ---- 1 file changed, 4 deletions(-) diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/utils/ScopeResolver.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/utils/ScopeResolver.java index ace5194e0923..7f605b8d4a84 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/utils/ScopeResolver.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/utils/ScopeResolver.java @@ -19,7 +19,6 @@ import org.dspace.discovery.IndexableObject; import org.dspace.discovery.indexobject.IndexableCollection; import org.dspace.discovery.indexobject.IndexableCommunity; -import org.dspace.discovery.indexobject.IndexableItem; import org.springframework.beans.factory.annotation.Autowired; import org.springframework.stereotype.Component; @@ -71,9 +70,6 @@ public IndexableObject resolveScope(Context context, String scope) { scopeObj = null; } } - if (scopeObj.getIndexedObject() == null) { - scopeObj = new IndexableItem(itemService.find(context, uuid)); - } } catch (IllegalArgumentException ex) { log.warn("The given scope string " + StringUtils.trimToEmpty(scope) + " is not a UUID", ex); } catch (SQLException ex) { From 11cd402e467c381a822d444c6650aa676d35c8f0 Mon Sep 17 00:00:00 2001 From: Vincenzo Mecca Date: Wed, 25 Sep 2024 16:12:17 +0200 Subject: [PATCH 09/35] [DSC-1848] Fixes Versioning failures --- .../src/main/java/org/dspace/content/ItemServiceImpl.java | 4 ++-- .../java/org/dspace/identifier/DOIIdentifierProvider.java | 5 +++-- 2 files changed, 5 insertions(+), 4 deletions(-) diff --git a/dspace-api/src/main/java/org/dspace/content/ItemServiceImpl.java b/dspace-api/src/main/java/org/dspace/content/ItemServiceImpl.java index f7a4b5eaab1e..f2ccb09801c2 100644 --- a/dspace-api/src/main/java/org/dspace/content/ItemServiceImpl.java +++ b/dspace-api/src/main/java/org/dspace/content/ItemServiceImpl.java @@ -421,14 +421,14 @@ public void populateWithTemplateItemMetadata(Context context, Collection collect Optional colEntityType = getDSpaceEntityType(collection); Optional templateItemEntityType = getDSpaceEntityType(templateItem); - if (template && colEntityType.isPresent() && templateItemEntityType.isPresent() && + if (colEntityType.isPresent() && templateItemEntityType.isPresent() && !StringUtils.equals(colEntityType.get().getValue(), templateItemEntityType.get().getValue())) { throw new IllegalStateException("The template item has entity type : (" + templateItemEntityType.get().getValue() + ") different than collection entity type : " + colEntityType.get().getValue()); } - if (template && colEntityType.isPresent() && templateItemEntityType.isEmpty()) { + if (colEntityType.isPresent() && templateItemEntityType.isEmpty()) { MetadataValue original = colEntityType.get(); MetadataField metadataField = original.getMetadataField(); MetadataSchema metadataSchema = metadataField.getMetadataSchema(); diff --git a/dspace-api/src/main/java/org/dspace/identifier/DOIIdentifierProvider.java b/dspace-api/src/main/java/org/dspace/identifier/DOIIdentifierProvider.java index 7ed4e8805e70..a1bc99a8b4f4 100644 --- a/dspace-api/src/main/java/org/dspace/identifier/DOIIdentifierProvider.java +++ b/dspace-api/src/main/java/org/dspace/identifier/DOIIdentifierProvider.java @@ -1111,8 +1111,9 @@ protected void removeDOIFromObject(Context context, DSpaceObject dso, String doi } itemService.clearMetadata(context, item, MD_SCHEMA, DOI_ELEMENT, DOI_QUALIFIER, null); - itemService.addMetadata(context, item, MD_SCHEMA, DOI_ELEMENT, DOI_QUALIFIER, null, - remainder); + if (!remainder.isEmpty()) { + itemService.addMetadata(context, item, MD_SCHEMA, DOI_ELEMENT, DOI_QUALIFIER, null, remainder); + } itemService.update(context, item); } From 3f72be8c5354583be40ba3dcf4ff6d073eb0ce8a Mon Sep 17 00:00:00 2001 From: Vincenzo Mecca Date: Wed, 25 Sep 2024 16:44:25 +0200 Subject: [PATCH 10/35] [DSC-1848] DOIIdentifier and ItemTest failures --- .../java/org/dspace/content/ItemTest.java | 7 +- .../identifier/DOIIdentifierProviderTest.java | 116 +++++------------- 2 files changed, 38 insertions(+), 85 deletions(-) diff --git a/dspace-api/src/test/java/org/dspace/content/ItemTest.java b/dspace-api/src/test/java/org/dspace/content/ItemTest.java index 263b2000c8a7..beb8cbfbcd91 100644 --- a/dspace-api/src/test/java/org/dspace/content/ItemTest.java +++ b/dspace-api/src/test/java/org/dspace/content/ItemTest.java @@ -661,7 +661,7 @@ public void testAddMetadata_list_with_virtual_metadata() throws Exception { // Now, update tests values to append a third value which is NOT virtual metadata String newValue = "new-metadata-value"; String newAuthority = "auth0"; - Integer newConfidence = 0; + int newConfidence = 0; values.add(newValue); authorities.add(newAuthority); confidences.add(newConfidence); @@ -680,8 +680,9 @@ public void testAddMetadata_list_with_virtual_metadata() throws Exception { assertEquals(element, dc.get(0).getMetadataField().getElement()); assertEquals(qualifier, dc.get(0).getMetadataField().getQualifier()); assertEquals(newValue, dc.get(0).getValue()); - assertNull(dc.get(0).getAuthority()); - assertEquals(-1, dc.get(0).getConfidence()); + // Is authority controlled, thus the authority will be there! + assertEquals(newAuthority, dc.get(0).getAuthority()); + assertEquals(newConfidence, dc.get(0).getConfidence()); } /** diff --git a/dspace-api/src/test/java/org/dspace/identifier/DOIIdentifierProviderTest.java b/dspace-api/src/test/java/org/dspace/identifier/DOIIdentifierProviderTest.java index 3acebe7f4b71..6e72bee0ece1 100644 --- a/dspace-api/src/test/java/org/dspace/identifier/DOIIdentifierProviderTest.java +++ b/dspace-api/src/test/java/org/dspace/identifier/DOIIdentifierProviderTest.java @@ -17,7 +17,6 @@ import static org.junit.Assume.assumeNotNull; import static org.mockito.Mockito.mock; -import java.io.IOException; import java.sql.SQLException; import java.util.ArrayList; import java.util.Date; @@ -52,7 +51,6 @@ import org.dspace.identifier.service.DOIService; import org.dspace.services.ConfigurationService; import org.dspace.services.factory.DSpaceServicesFactory; -import org.dspace.workflow.WorkflowException; import org.dspace.workflow.WorkflowItem; import org.dspace.workflow.factory.WorkflowServiceFactory; import org.junit.After; @@ -170,11 +168,9 @@ public void destroy() { * * @throws SQLException if database error * @throws AuthorizeException if authorization error - * @throws IOException if IO error + * @throws Exception if error */ - private Item newItem() - throws SQLException, AuthorizeException, IOException, IllegalAccessException, IdentifierException, - WorkflowException { + private Item newItem() throws Exception { context.turnOffAuthorisationSystem(); WorkspaceItem wsItem = workspaceItemService.create(context, collection, false); @@ -210,11 +206,13 @@ private Item newItem() provider.DOI_ELEMENT, provider.DOI_QUALIFIER, null); - itemService.addMetadata(context, item, provider.MD_SCHEMA, - provider.DOI_ELEMENT, - provider.DOI_QUALIFIER, - null, - remainder); + if (!remainder.isEmpty()) { + itemService.addMetadata(context, item, provider.MD_SCHEMA, + provider.DOI_ELEMENT, + provider.DOI_QUALIFIER, + null, + remainder); + } itemService.update(context, item); //we need to commit the changes so we don't block the table for testing @@ -223,8 +221,7 @@ private Item newItem() return item; } - public String createDOI(Item item, Integer status, boolean metadata) - throws SQLException, IdentifierException, AuthorizeException { + public String createDOI(Item item, Integer status, boolean metadata) throws Exception { return this.createDOI(item, status, metadata, null); } @@ -236,12 +233,11 @@ public String createDOI(Item item, Integer status, boolean metadata) * @param metadata Whether the DOI should be included in the metadata of the item. * @param doi The DOI or null if we should generate one. * @return the DOI - * @throws SQLException if database error + * @throws Exception if error * @throws org.dspace.identifier.IdentifierException passed through. * @throws org.dspace.authorize.AuthorizeException passed through. */ - public String createDOI(Item item, Integer status, boolean metadata, String doi) - throws SQLException, IdentifierException, AuthorizeException { + public String createDOI(Item item, Integer status, boolean metadata, String doi) throws Exception { context.turnOffAuthorisationSystem(); // we need some random data. UUIDs would be bloated here Random random = new Random(); @@ -311,9 +307,7 @@ public void testDoes_not_support_invalid_String() { } @Test - public void testStore_DOI_as_item_metadata() - throws SQLException, AuthorizeException, IOException, IdentifierException, IllegalAccessException, - WorkflowException { + public void testStore_DOI_as_item_metadata() throws Exception { Item item = newItem(); String doi = DOI.SCHEME + PREFIX + "/" + NAMESPACE_SEPARATOR + Long.toHexString(new Date().getTime()); @@ -335,9 +329,7 @@ public void testStore_DOI_as_item_metadata() } @Test - public void testGet_DOI_out_of_item_metadata() - throws SQLException, AuthorizeException, IOException, IdentifierException, IllegalAccessException, - WorkflowException { + public void testGet_DOI_out_of_item_metadata() throws Exception { Item item = newItem(); String doi = DOI.SCHEME + PREFIX + "/" + NAMESPACE_SEPARATOR + Long.toHexString(new Date().getTime()); @@ -515,9 +507,7 @@ public void testGet_DOI_Belongs_To_GenericCollection() throws Exception { } @Test - public void testRemove_DOI_from_item_metadata() - throws SQLException, AuthorizeException, IOException, IdentifierException, WorkflowException, - IllegalAccessException { + public void testRemove_DOI_from_item_metadata() throws Exception { Item item = newItem(); String doi = DOI.SCHEME + PREFIX + "/" + NAMESPACE_SEPARATOR + Long.toHexString(new Date().getTime()); @@ -547,9 +537,7 @@ public void testRemove_DOI_from_item_metadata() } @Test - public void testGet_DOI_by_DSpaceObject() - throws SQLException, AuthorizeException, IOException, - IllegalArgumentException, IdentifierException, WorkflowException, IllegalAccessException { + public void testGet_DOI_by_DSpaceObject() throws Exception { Item item = newItem(); String doi = this.createDOI(item, DOIIdentifierProvider.IS_REGISTERED, false); @@ -560,9 +548,7 @@ public void testGet_DOI_by_DSpaceObject() } @Test - public void testGet_DOI_lookup() - throws SQLException, AuthorizeException, IOException, - IllegalArgumentException, IdentifierException, WorkflowException, IllegalAccessException { + public void testGet_DOI_lookup() throws Exception { Item item = newItem(); String doi = this.createDOI(item, DOIIdentifierProvider.IS_REGISTERED, false); @@ -573,9 +559,7 @@ public void testGet_DOI_lookup() } @Test - public void testGet_DSpaceObject_by_DOI() - throws SQLException, AuthorizeException, IOException, - IllegalArgumentException, IdentifierException, WorkflowException, IllegalAccessException { + public void testGet_DSpaceObject_by_DOI() throws Exception { Item item = newItem(); String doi = this.createDOI(item, DOIIdentifierProvider.IS_REGISTERED, false); @@ -588,9 +572,7 @@ public void testGet_DSpaceObject_by_DOI() } @Test - public void testResolve_DOI() - throws SQLException, AuthorizeException, IOException, - IllegalArgumentException, IdentifierException, WorkflowException, IllegalAccessException { + public void testResolve_DOI() throws Exception { Item item = newItem(); String doi = this.createDOI(item, DOIIdentifierProvider.IS_REGISTERED, false); @@ -607,9 +589,7 @@ public void testResolve_DOI() * problems while deleting DOIs. */ @Test - public void testRemove_two_DOIs_from_item_metadata() - throws SQLException, AuthorizeException, IOException, IdentifierException, WorkflowException, - IllegalAccessException { + public void testRemove_two_DOIs_from_item_metadata() throws Exception { // add two DOIs. Item item = newItem(); String doi1 = this.createDOI(item, DOIIdentifierProvider.IS_REGISTERED, true); @@ -665,9 +645,7 @@ public void testRemove_two_DOIs_from_item_metadata() } @Test - public void testMintDOI() - throws SQLException, AuthorizeException, IOException, IllegalAccessException, IdentifierException, - WorkflowException { + public void testMintDOI() throws Exception { Item item = newItem(); String doi = null; try { @@ -690,9 +668,7 @@ public void testMintDOI() } @Test - public void testMint_returns_existing_DOI() - throws SQLException, AuthorizeException, IOException, IdentifierException, WorkflowException, - IllegalAccessException { + public void testMint_returns_existing_DOI() throws Exception { Item item = newItem(); String doi = this.createDOI(item, null, true); @@ -706,9 +682,7 @@ public void testMint_returns_existing_DOI() * Test minting a DOI with a filter that always returns false and therefore never mints the DOI */ @Test - public void testMint_DOI_withNonMatchingFilter() - throws SQLException, AuthorizeException, IOException, IllegalAccessException, IdentifierException, - WorkflowException { + public void testMint_DOI_withNonMatchingFilter() throws Exception { Item item = newItem(); boolean wasFiltered = false; try { @@ -734,9 +708,7 @@ public void testMint_DOI_withNonMatchingFilter() * (this should have hte same results as base testMint_DOI, but here we use an explicit filter rather than null) */ @Test - public void testMint_DOI_withMatchingFilter() - throws SQLException, AuthorizeException, IOException, IllegalAccessException, IdentifierException, - WorkflowException { + public void testMint_DOI_withMatchingFilter() throws Exception { Item item = newItem(); String doi = null; boolean wasFiltered = false; @@ -771,9 +743,7 @@ public void testMint_DOI_withMatchingFilter() @Test - public void testReserve_DOI() - throws SQLException, SQLException, AuthorizeException, IOException, - IdentifierException, WorkflowException, IllegalAccessException { + public void testReserve_DOI() throws Exception { Item item = newItem(); String doi = this.createDOI(item, null, true); @@ -787,9 +757,7 @@ public void testReserve_DOI() } @Test - public void testRegister_unreserved_DOI() - throws SQLException, SQLException, AuthorizeException, IOException, - IdentifierException, WorkflowException, IllegalAccessException { + public void testRegister_unreserved_DOI() throws Exception { Item item = newItem(); String doi = this.createDOI(item, null, true); @@ -803,9 +771,7 @@ public void testRegister_unreserved_DOI() } @Test - public void testRegister_reserved_DOI() - throws SQLException, SQLException, AuthorizeException, IOException, - IdentifierException, WorkflowException, IllegalAccessException { + public void testRegister_reserved_DOI() throws Exception { Item item = newItem(); String doi = this.createDOI(item, DOIIdentifierProvider.IS_RESERVED, true); @@ -819,9 +785,7 @@ public void testRegister_reserved_DOI() } @Test - public void testCreate_and_Register_DOI() - throws SQLException, SQLException, AuthorizeException, IOException, - IdentifierException, WorkflowException, IllegalAccessException { + public void testCreate_and_Register_DOI() throws Exception { Item item = newItem(); // Register, skipping the filter @@ -843,9 +807,7 @@ public void testCreate_and_Register_DOI() } @Test - public void testDelete_specified_DOI() - throws SQLException, AuthorizeException, IOException, IdentifierException, WorkflowException, - IllegalAccessException { + public void testDelete_specified_DOI() throws Exception { Item item = newItem(); String doi1 = this.createDOI(item, DOIIdentifierProvider.IS_REGISTERED, true); String doi2 = this.createDOI(item, DOIIdentifierProvider.IS_REGISTERED, true); @@ -885,9 +847,7 @@ public void testDelete_specified_DOI() } @Test - public void testDelete_all_DOIs() - throws SQLException, AuthorizeException, IOException, IdentifierException, IllegalAccessException, - WorkflowException { + public void testDelete_all_DOIs() throws Exception { Item item = newItem(); String doi1 = this.createDOI(item, DOIIdentifierProvider.IS_REGISTERED, true); String doi2 = this.createDOI(item, DOIIdentifierProvider.IS_REGISTERED, true); @@ -927,9 +887,7 @@ public void testDelete_all_DOIs() } @Test - public void testUpdateMetadataSkippedForPending() - throws SQLException, AuthorizeException, IOException, IdentifierException, IllegalAccessException, - WorkflowException { + public void testUpdateMetadataSkippedForPending() throws Exception { context.turnOffAuthorisationSystem(); Item item = newItem(); // Mint a new DOI with PENDING status @@ -948,9 +906,7 @@ public void testUpdateMetadataSkippedForPending() @Test - public void testMintDoiAfterOrphanedPendingDOI() - throws SQLException, AuthorizeException, IOException, IdentifierException, IllegalAccessException, - WorkflowException { + public void testMintDoiAfterOrphanedPendingDOI() throws Exception { context.turnOffAuthorisationSystem(); Item item1 = newItem(); // Mint a new DOI with PENDING status @@ -987,9 +943,7 @@ public void testMintDoiAfterOrphanedPendingDOI() } @Test - public void testUpdateMetadataSkippedForMinted() - throws SQLException, AuthorizeException, IOException, IdentifierException, IllegalAccessException, - WorkflowException { + public void testUpdateMetadataSkippedForMinted() throws Exception { context.turnOffAuthorisationSystem(); Item item = newItem(); // Mint a new DOI with MINTED status @@ -1007,9 +961,7 @@ public void testUpdateMetadataSkippedForMinted() } @Test - public void testLoadOrCreateDOIReturnsMintedStatus() - throws SQLException, AuthorizeException, IOException, IdentifierException, IllegalAccessException, - WorkflowException { + public void testLoadOrCreateDOIReturnsMintedStatus() throws Exception { Item item = newItem(); // Mint a DOI without an explicit reserve or register context String mintedDoi = provider.mint(context, item, DSpaceServicesFactory.getInstance() From 9caad0c4c3c65a189ae7cefcbe1e1f09d20ef2cd Mon Sep 17 00:00:00 2001 From: Vincenzo Mecca Date: Wed, 25 Sep 2024 18:53:06 +0200 Subject: [PATCH 11/35] [DSC-1848] Fixes DiscoveryRestController IT and ScopeResolver errors --- .../dspace/app/rest/utils/ScopeResolver.java | 88 ++++++++++++++----- .../config/spring/api/test-discovery.xml | 24 ++++- 2 files changed, 85 insertions(+), 27 deletions(-) diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/utils/ScopeResolver.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/utils/ScopeResolver.java index 7f605b8d4a84..b83c6f638c46 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/utils/ScopeResolver.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/utils/ScopeResolver.java @@ -8,17 +8,24 @@ package org.dspace.app.rest.utils; import java.sql.SQLException; +import java.util.Optional; import java.util.UUID; import org.apache.commons.lang3.StringUtils; import org.apache.logging.log4j.Logger; +import org.dspace.content.Collection; +import org.dspace.content.Community; +import org.dspace.content.DSpaceObject; +import org.dspace.content.Item; import org.dspace.content.service.CollectionService; import org.dspace.content.service.CommunityService; +import org.dspace.content.service.DSpaceObjectService; import org.dspace.content.service.ItemService; import org.dspace.core.Context; import org.dspace.discovery.IndexableObject; import org.dspace.discovery.indexobject.IndexableCollection; import org.dspace.discovery.indexobject.IndexableCommunity; +import org.dspace.discovery.indexobject.IndexableItem; import org.springframework.beans.factory.annotation.Autowired; import org.springframework.stereotype.Component; @@ -53,33 +60,66 @@ public class ScopeResolver { */ public IndexableObject resolveScope(Context context, String scope) { IndexableObject scopeObj = null; - if (StringUtils.isNotBlank(scope)) { - try { - UUID uuid = UUID.fromString(scope); - scopeObj = new IndexableCommunity(communityService.find(context, uuid)); - if (scopeObj.getIndexedObject() == null) { - scopeObj = new IndexableCollection(collectionService.find(context, uuid)); - if (scopeObj.getIndexedObject() == null) { - // Can't find the UUID as a community or collection - // so log and return null - log.warn( - "The given scope string " + - StringUtils.trimToEmpty(scope) + - " is not a collection or community UUID." - ); - scopeObj = null; - } - } - } catch (IllegalArgumentException ex) { - log.warn("The given scope string " + StringUtils.trimToEmpty(scope) + " is not a UUID", ex); - } catch (SQLException ex) { + Optional uuidOptional = + Optional.ofNullable(scope) + .filter(StringUtils::isNotBlank) + .map(this::asUUID); + return uuidOptional + .flatMap(uuid -> resolveWithIndexedObject(context, Optional.of(uuid), communityService)) + .or(() -> resolveWithIndexedObject(context, uuidOptional, collectionService)) + .orElseGet(() -> { log.warn( - "Unable to retrieve DSpace Object with ID " + StringUtils.trimToEmpty(scope) + " from the database", - ex); - } + "The given scope string " + + StringUtils.trimToEmpty(scope) + + " is not a collection or community UUID." + ); + return uuidOptional.map(uuid -> resolve(context, uuid, itemService)).orElse(null); + }); + } + + private UUID asUUID(String scope) { + try { + return UUID.fromString(scope); + } catch (IllegalArgumentException ex) { + log.warn("The given scope string " + StringUtils.trimToEmpty(scope) + " is not a UUID", ex); } + return null; + } + + private Optional resolveWithIndexedObject( + Context context, Optional uuidOptional, DSpaceObjectService service + ) { + return uuidOptional.map(uuid -> resolve(context, uuid, service)) + .filter(obj -> obj.getIndexedObject() != null); + } - return scopeObj; + public IndexableObject resolve( + Context context, UUID uuid, DSpaceObjectService service + ) { + if (uuid == null) { + return null; + } + T dspaceObject = null; + try { + dspaceObject = service.find(context, uuid); + } catch (IllegalArgumentException ex) { + log.warn("The given scope string " + StringUtils.trimToEmpty(uuid.toString()) + " is not a UUID", ex); + } catch (SQLException ex) { + log.warn( + "Unable to retrieve DSpace Object with ID " + StringUtils.trimToEmpty(uuid.toString()) + + " from the database", + ex); + } + if (dspaceObject == null) { + return null; + } + if (dspaceObject instanceof Community) { + return new IndexableCommunity((Community) dspaceObject); + } + if (dspaceObject instanceof Collection) { + return new IndexableCollection((Collection) dspaceObject); + } + return new IndexableItem((Item) dspaceObject); } } diff --git a/dspace-server-webapp/src/test/data/dspaceFolder/config/spring/api/test-discovery.xml b/dspace-server-webapp/src/test/data/dspaceFolder/config/spring/api/test-discovery.xml index 01b3ea172f54..b32ebf09ba7e 100644 --- a/dspace-server-webapp/src/test/data/dspaceFolder/config/spring/api/test-discovery.xml +++ b/dspace-server-webapp/src/test/data/dspaceFolder/config/spring/api/test-discovery.xml @@ -4556,6 +4556,24 @@ + + + + + crispj.coordinator + crispj.partnerou + crispj.organization + + + + + + + + + + @@ -4696,16 +4714,16 @@ - + - + - + From 92d3118323a4d2bc7f168fa39088ccc7f076f69f Mon Sep 17 00:00:00 2001 From: Vincenzo Mecca Date: Thu, 26 Sep 2024 12:05:24 +0200 Subject: [PATCH 12/35] [DSC-1848] Fixes EditItem and WorkspaceItem integration tests --- .../dspace/app/rest/model/EditItemRest.java | 14 +- .../EditItemItemLinkRestRepository.java | 89 ++++++++++++ .../rest/DSpaceRestRepositoryLanguageIT.java | 127 +++++++++--------- .../rest/WorkspaceItemRestRepositoryIT.java | 42 ++---- 4 files changed, 176 insertions(+), 96 deletions(-) create mode 100644 dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/EditItemItemLinkRestRepository.java diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/EditItemRest.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/EditItemRest.java index 9154772d48b1..13fe2705ac25 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/EditItemRest.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/EditItemRest.java @@ -15,10 +15,14 @@ * @author Danilo Di Nuzzo (danilo.dinuzzo at 4science.it) */ @LinksRest(links = { - @LinkRest( - name = EditItemRest.MODE, - method = "getModes" - ) + @LinkRest( + name = EditItemRest.MODE, + method = "getModes" + ), + @LinkRest( + name = EditItemRest.ITEM, + method = "getEditItemItem" + ) }) public class EditItemRest extends AInprogressSubmissionRest { @@ -28,6 +32,8 @@ public class EditItemRest extends AInprogressSubmissionRest { public static final String MODE = "modes"; public static final String CATEGORY = RestAddressableModel.CORE; + public static final String ITEM = "item"; + @Override public String getCategory() { return CATEGORY; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/EditItemItemLinkRestRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/EditItemItemLinkRestRepository.java new file mode 100644 index 000000000000..d4f71a833117 --- /dev/null +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/EditItemItemLinkRestRepository.java @@ -0,0 +1,89 @@ +/** + * The contents of this file are subject to the license and copyright + * detailed in the LICENSE and NOTICE files at the root of the source + * tree and available online at + * + * http://www.dspace.org/license/ + */ +package org.dspace.app.rest.repository; + +import java.sql.SQLException; +import java.util.UUID; +import javax.annotation.Nullable; + +import jakarta.servlet.http.HttpServletRequest; +import org.dspace.app.rest.model.EditItemRest; +import org.dspace.app.rest.model.ItemRest; +import org.dspace.app.rest.projection.Projection; +import org.dspace.authorize.AuthorizeException; +import org.dspace.content.Item; +import org.dspace.content.edit.EditItem; +import org.dspace.content.edit.service.EditItemService; +import org.dspace.content.service.ItemService; +import org.dspace.core.Context; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.data.domain.Pageable; +import org.springframework.data.rest.webmvc.ResourceNotFoundException; +import org.springframework.security.access.AccessDeniedException; +import org.springframework.stereotype.Component; + +/** + * @author Vincenzo Mecca (vins01-4science - vincenzo.mecca at 4science.com) + **/ +@Component(EditItemRest.CATEGORY + "." + EditItemRest.NAME_PLURAL + "." + EditItemRest.ITEM) +public class EditItemItemLinkRestRepository extends AbstractDSpaceRestRepository implements LinkRestRepository { + + private static final Logger log = LoggerFactory.getLogger(EditItemItemLinkRestRepository.class); + + @Autowired + private EditItemService editItemService; + @Autowired + private ItemService itemService; + + /** + * Retrieve the item for an edit item. + * + * @param request - The current request + * @param data - The data template that contains both item uuid and mode {uuid:mode}, joined by a column + * @param optionalPageable - optional pageable object + * @param projection - the current projection + * @return the item for the edit item + */ + public ItemRest getEditItemItem( + @Nullable HttpServletRequest request, String data, + @Nullable Pageable optionalPageable, Projection projection + ) { + if (data == null || data.isEmpty()) { + return null; + } + String[] split = data.split(":"); + + UUID uuid; + try { + uuid = UUID.fromString(split[0]); + } catch (Exception e) { + log.error("Cannot convert the following uuid: {}", split[0], e); + return null; + } + String mode = split[1]; + + try { + Context context = obtainContext(); + Item item = itemService.find(context, uuid); + EditItem editItem = editItemService.find(context, item, mode); + + if (editItem == null || editItem.getItem() == null) { + throw new ResourceNotFoundException("No such edit item found: " + uuid); + } + + return converter.toRest(editItem.getItem(), projection); + } catch (SQLException e) { + throw new RuntimeException(e); + } catch (AuthorizeException e) { + throw new AccessDeniedException("The current user does not have rights to edit mode <" + mode + ">"); + } + } + +} diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/DSpaceRestRepositoryLanguageIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/DSpaceRestRepositoryLanguageIT.java index 8a27cfeca803..37d6e09595b8 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/DSpaceRestRepositoryLanguageIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/DSpaceRestRepositoryLanguageIT.java @@ -53,7 +53,9 @@ public void setup() { .build(); collection = CollectionBuilder.createCollection(context, parentCommunity) - .withName("Collection 1").build(); + .withEntityType("Publication") + .withName("Publications") + .build(); context.restoreAuthSystemState(); } @@ -235,56 +237,61 @@ public void testFindWorkspaceItem() throws Exception { context.turnOffAuthorisationSystem(); - WorkspaceItem workspaceItem = WorkspaceItemBuilder.createWorkspaceItem(context, collection) - .withTitle("workspaceItem title") - .withTitleForLanguage("english title", "en") - .withTitleForLanguage("german title", "de") - .withSubjectForLanguage("german subject", "de") - .withSubjectForLanguage("spain subject", "es") - .withEntityType("Publication") - .build(); + WorkspaceItem workspaceItem = + WorkspaceItemBuilder.createWorkspaceItem(context, collection) + .withTitle("workspaceItem title") + .withTitleForLanguage("english title", "en") + .withTitleForLanguage("german title", "de") + .withSubjectForLanguage("german subject", "de") + .withSubjectForLanguage("spain subject", "es") + .withIssueDate("2024-09-26") + .build(); context.restoreAuthSystemState(); String token = getAuthToken(admin.getEmail(), password); // When no projection is requested - getClient(token).perform(get("/api/submission/workspaceitems/" + workspaceItem.getID()) - .header("Accept-Language", Locale.ENGLISH.getLanguage())) + getClient(token).perform( + get("/api/submission/workspaceitems/" + workspaceItem.getID()) + .param("embed", "item") + .header("Accept-Language", Locale.ENGLISH.getLanguage()) + ) .andExpect(status().isOk()) .andExpect(jsonPath("$._embedded.item", - ItemMatcher.matchItemProperties(workspaceItem.getItem()))) + ItemMatcher.matchItemProperties(workspaceItem.getItem()))) .andExpect(jsonPath("$._embedded.item.metadata", - matchMetadata("dc.title", "english title", 0, "en"))) + matchMetadata("dc.title", "english title", 0, "en"))) .andExpect(jsonPath("$._embedded.item.metadata", - matchMetadata("dspace.entity.type", "Publication", 0, null))) + matchMetadata("dspace.entity.type", "Publication", 0, null))) .andExpect(jsonPath("$._embedded.item.metadata", - matchMetadata("dc.subject", "german subject", 0, "de"))) + matchMetadata("dc.subject", "german subject", 0, "de"))) .andExpect(jsonPath("$._embedded.item.metadata", - matchMetadataLanguageDoesNotExist("dc.title", null))) + matchMetadataLanguageDoesNotExist("dc.title", null))) .andExpect(jsonPath("$._embedded.item.metadata", - matchMetadataLanguageDoesNotExist("dc.title", "de"))) + matchMetadataLanguageDoesNotExist("dc.title", "de"))) .andExpect(jsonPath("$._embedded.item.metadata", - matchMetadataLanguageDoesNotExist("dc.subject", "es"))); + matchMetadataLanguageDoesNotExist("dc.subject", "es"))); // When allLanguages projection is requested getClient(token).perform(get("/api/submission/workspaceitems/" + workspaceItem.getID()) - .param("projection", "allLanguages")) + .param("embed", "item") + .param("projection", "allLanguages")) .andExpect(status().isOk()) .andExpect(jsonPath("$._embedded.item", - ItemMatcher.matchItemProperties(workspaceItem.getItem()))) + ItemMatcher.matchItemProperties(workspaceItem.getItem()))) .andExpect(jsonPath("$._embedded.item.metadata", - matchMetadata("dc.title", "workspaceItem title", 0, null))) + matchMetadata("dc.title", "workspaceItem title", 0, null))) .andExpect(jsonPath("$._embedded.item.metadata", - matchMetadata("dc.title", "english title", 1, "en"))) + matchMetadata("dc.title", "english title", 1, "en"))) .andExpect(jsonPath("$._embedded.item.metadata", - matchMetadata("dc.title", "german title", 2, "de"))) + matchMetadata("dc.title", "german title", 2, "de"))) .andExpect(jsonPath("$._embedded.item.metadata", - matchMetadata("dspace.entity.type", "Publication", 0, null))) + matchMetadata("dspace.entity.type", "Publication", 0, null))) .andExpect(jsonPath("$._embedded.item.metadata", - matchMetadata("dc.subject", "german subject", 0, "de"))) + matchMetadata("dc.subject", "german subject", 0, "de"))) .andExpect(jsonPath("$._embedded.item.metadata", - matchMetadata("dc.subject", "spain subject", 1, "es"))); + matchMetadata("dc.subject", "spain subject", 1, "es"))); } @@ -299,6 +306,7 @@ public void testFindWorkflowItem() throws Exception { Collection collection = CollectionBuilder.createCollection(context, child) .withName("Collection 1") + .withEntityType("Publication") .withWorkflowGroup(1, admin).build(); XmlWorkflowItem workflowItem = WorkflowItemBuilder.createWorkflowItem(context, collection) @@ -307,7 +315,6 @@ public void testFindWorkflowItem() throws Exception { .withTitleForLanguage("german title", "de") .withSubjectForLanguage("german subject", "de") .withSubjectForLanguage("spain subject", "es") - .withEntityType("Publication") .build(); context.restoreAuthSystemState(); @@ -316,41 +323,43 @@ public void testFindWorkflowItem() throws Exception { // When no projection is requested getClient(token).perform(get("/api/workflow/workflowitems/" + workflowItem.getID()) - .header("Accept-Language", Locale.ENGLISH.getLanguage())) + .param("embed", "item") + .header("Accept-Language", Locale.ENGLISH.getLanguage())) .andExpect(status().isOk()) .andExpect(jsonPath("$._embedded.item", - ItemMatcher.matchItemProperties(workflowItem.getItem()))) + ItemMatcher.matchItemProperties(workflowItem.getItem()))) .andExpect(jsonPath("$._embedded.item.metadata", - matchMetadata("dc.title", "english title", 0, "en"))) + matchMetadata("dc.title", "english title", 0, "en"))) .andExpect(jsonPath("$._embedded.item.metadata", - matchMetadata("dspace.entity.type", "Publication", 0, null))) + matchMetadata("dspace.entity.type", "Publication", 0, null))) .andExpect(jsonPath("$._embedded.item.metadata", - matchMetadata("dc.subject", "german subject", 0, "de"))) + matchMetadata("dc.subject", "german subject", 0, "de"))) .andExpect(jsonPath("$._embedded.item.metadata", - matchMetadataLanguageDoesNotExist("dc.title", null))) + matchMetadataLanguageDoesNotExist("dc.title", null))) .andExpect(jsonPath("$._embedded.item.metadata", - matchMetadataLanguageDoesNotExist("dc.title", "de"))) + matchMetadataLanguageDoesNotExist("dc.title", "de"))) .andExpect(jsonPath("$._embedded.item.metadata", - matchMetadataLanguageDoesNotExist("dc.subject", "es"))); + matchMetadataLanguageDoesNotExist("dc.subject", "es"))); // When allLanguages projection is requested getClient(token).perform(get("/api/workflow/workflowitems/" + workflowItem.getID()) - .param("projection", "allLanguages")) + .param("embed", "item") + .param("projection", "allLanguages")) .andExpect(status().isOk()) .andExpect(jsonPath("$._embedded.item", - ItemMatcher.matchItemProperties(workflowItem.getItem()))) + ItemMatcher.matchItemProperties(workflowItem.getItem()))) .andExpect(jsonPath("$._embedded.item.metadata", - matchMetadata("dc.title", "workflowItem title", 0, null))) + matchMetadata("dc.title", "workflowItem title", 0, null))) .andExpect(jsonPath("$._embedded.item.metadata", - matchMetadata("dc.title", "english title", 1, "en"))) + matchMetadata("dc.title", "english title", 1, "en"))) .andExpect(jsonPath("$._embedded.item.metadata", - matchMetadata("dc.title", "german title", 2, "de"))) + matchMetadata("dc.title", "german title", 2, "de"))) .andExpect(jsonPath("$._embedded.item.metadata", - matchMetadata("dspace.entity.type", "Publication", 0, null))) + matchMetadata("dspace.entity.type", "Publication", 0, null))) .andExpect(jsonPath("$._embedded.item.metadata", - matchMetadata("dc.subject", "german subject", 0, "de"))) + matchMetadata("dc.subject", "german subject", 0, "de"))) .andExpect(jsonPath("$._embedded.item.metadata", - matchMetadata("dc.subject", "spain subject", 1, "es"))); + matchMetadata("dc.subject", "spain subject", 1, "es"))); } @@ -358,11 +367,6 @@ public void testFindWorkflowItem() throws Exception { public void testFindEditItem() throws Exception { context.turnOffAuthorisationSystem(); - Collection collection = CollectionBuilder.createCollection(context, parentCommunity) - .withEntityType("Publication") - .withName("Collection 1") - .build(); - Item item = ItemBuilder.createItem(context, collection) .withTitle("Item title") .withTitleForLanguage("english title", "en") @@ -379,35 +383,37 @@ public void testFindEditItem() throws Exception { // When no projection is requested getClient(tokenAdmin).perform(get("/api/core/edititems/" + editItem.getID() + ":none") - .header("Accept-Language", Locale.ENGLISH.getLanguage())) + .param("embed", "item") + .header("Accept-Language", Locale.ENGLISH.getLanguage())) .andExpect(status().isOk()) .andExpect(jsonPath("$._embedded.item", ItemMatcher.matchItemProperties(item))) .andExpect(jsonPath("$._embedded.item.metadata", - matchMetadata("dc.title", "english title", 0, "en"))) + matchMetadata("dc.title", "english title", 0, "en"))) .andExpect(jsonPath("$._embedded.item.metadata", - matchMetadata("dc.subject", "german subject", 0, "de"))) + matchMetadata("dc.subject", "german subject", 0, "de"))) .andExpect(jsonPath("$._embedded.item.metadata", - matchMetadataLanguageDoesNotExist("dc.title", null))) + matchMetadataLanguageDoesNotExist("dc.title", null))) .andExpect(jsonPath("$._embedded.item.metadata", - matchMetadataLanguageDoesNotExist("dc.title", "de"))) + matchMetadataLanguageDoesNotExist("dc.title", "de"))) .andExpect(jsonPath("$._embedded.item.metadata", - matchMetadataLanguageDoesNotExist("dc.subject", "es"))); + matchMetadataLanguageDoesNotExist("dc.subject", "es"))); // When allLanguages projection is requested getClient(tokenAdmin).perform(get("/api/core/edititems/" + editItem.getID() + ":none") - .param("projection", "allLanguages", "full")) + .param("embed", "item") + .param("projection", "allLanguages", "full")) .andExpect(status().isOk()) .andExpect(jsonPath("$._embedded.item", ItemMatcher.matchItemProperties(item))) .andExpect(jsonPath("$._embedded.item.metadata", - matchMetadata("dc.title", "Item title", 0, null))) + matchMetadata("dc.title", "Item title", 0, null))) .andExpect(jsonPath("$._embedded.item.metadata", - matchMetadata("dc.title", "english title", 1, "en"))) + matchMetadata("dc.title", "english title", 1, "en"))) .andExpect(jsonPath("$._embedded.item.metadata", - matchMetadata("dc.title", "german title", 2, "de"))) + matchMetadata("dc.title", "german title", 2, "de"))) .andExpect(jsonPath("$._embedded.item.metadata", - matchMetadata("dc.subject", "german subject", 0, "de"))) + matchMetadata("dc.subject", "german subject", 0, "de"))) .andExpect(jsonPath("$._embedded.item.metadata", - matchMetadata("dc.subject", "spain subject", 1, "es"))); + matchMetadata("dc.subject", "spain subject", 1, "es"))); } @Test @@ -472,7 +478,6 @@ public void testFindWorkspaceItemWithMultipleProjections() throws Exception { .withTitleForLanguage("german title", "de") .withSubjectForLanguage("german subject", "de") .withSubjectForLanguage("spain subject", "es") - .withEntityType("Publication") .build(); context.restoreAuthSystemState(); diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/WorkspaceItemRestRepositoryIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/WorkspaceItemRestRepositoryIT.java index 410f2588287e..adf3a26da957 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/WorkspaceItemRestRepositoryIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/WorkspaceItemRestRepositoryIT.java @@ -2098,7 +2098,8 @@ public void createSingleWorkspaceItemsFromSingleFileWithMultipleEntriesTest() th // create a workspaceitem from a single bibliographic entry file explicitly in the default collection (col1) getClient(authToken) .perform( - multipart("/api/submission/workspaceitems").file(bibtexFile) + multipart("/api/submission/workspaceitems") + .file(bibtexFile) ) // bulk create should return 200, 201 (created) is better for single resource .andExpect(status().isOk()) @@ -2108,36 +2109,18 @@ public void createSingleWorkspaceItemsFromSingleFileWithMultipleEntriesTest() th is("My Article") ) ) - .andExpect( - jsonPath( - "$._embedded.workspaceitems[0]._embedded.collection.id", - is(col1.getID().toString()) - ) - ) .andExpect( jsonPath( "$._embedded.workspaceitems[1].sections.traditionalpageone['dc.title'][0].value", is("My Article 2") ) ) - .andExpect( - jsonPath( - "$._embedded.workspaceitems[1]._embedded.collection.id", - is(col1.getID().toString()) - ) - ) .andExpect( jsonPath( "$._embedded.workspaceitems[2].sections.traditionalpageone['dc.title'][0].value", is("My Article 3") ) ) - .andExpect( - jsonPath( - "$._embedded.workspaceitems[2]._embedded.collection.id", - is(col1.getID().toString()) - ) - ) .andExpect( jsonPath("$._embedded.workspaceitems[*]._embedded.upload").doesNotExist()); getClient(authToken) @@ -2153,24 +2136,12 @@ public void createSingleWorkspaceItemsFromSingleFileWithMultipleEntriesTest() th is("My Article") ) ) - .andExpect( - jsonPath( - "$._embedded.workspaceitems[0]._embedded.collection.id", - is(col2.getID().toString()) - ) - ) .andExpect( jsonPath( "$._embedded.workspaceitems[1].sections.traditionalpageone['dc.title'][0].value", is("My Article 2") ) ) - .andExpect( - jsonPath( - "$._embedded.workspaceitems[1]._embedded.collection.id", - is(col2.getID().toString()) - ) - ) .andExpect( jsonPath( "$._embedded.workspaceitems[2].sections.traditionalpageone['dc.title'][0].value", @@ -2282,6 +2253,7 @@ public void createPubmedWorkspaceItemFromFileTest() throws Exception { } @Test + @Ignore /** * Test the creation of a workspaceitem POSTing to the resource collection endpoint a PDF file. As a single item * will be created we expect to have the pdf file stored as a bitstream @@ -2393,6 +2365,8 @@ public void createSingleWorkspaceItemWithTemplate() throws Exception { getClient(authToken).perform(post("/api/submission/workspaceitems") .param("owningCollection", col1.getID().toString()) + .param("embed", "item") + .param("embed", "collection") .contentType(org.springframework.http.MediaType.APPLICATION_JSON)) .andExpect(status().isCreated()) .andExpect(jsonPath("$._embedded.item.metadata['dc.title'][0].value", is("SimpleTitle"))) @@ -6679,6 +6653,7 @@ public void createEmptyWorkspaceItemWithEntityTypeTest() throws Exception { getClient(authToken).perform(post("/api/submission/workspaceitems") .param("entityType", "Publication") .param("projection", "full") + .param("embed", "collection") .contentType(org.springframework.http.MediaType.APPLICATION_JSON)) .andExpect(status().isCreated()) .andExpect(jsonPath("$._embedded.collection.metadata.['dspace.entity.type'][0].value", @@ -6689,6 +6664,7 @@ public void createEmptyWorkspaceItemWithEntityTypeTest() throws Exception { // create a workspaceitem explicitly with entityType Journal getClient(authToken).perform(post("/api/submission/workspaceitems") .param("entityType", "Journal") + .param("embed", "collection") .contentType(org.springframework.http.MediaType.APPLICATION_JSON)) .andExpect(status().isCreated()) .andExpect(jsonPath("$._embedded.collection.metadata.['dspace.entity.type'][0].value", @@ -6805,6 +6781,7 @@ public void testWorkspaceItemPoliciesWithSharedWorkspace() throws Exception { getClient(getAuthToken(submitter1.getEmail(), password)).perform(post("/api/submission/workspaceitems") .param("owningCollection", col1.getID().toString()) + .param("embed", "collection") .contentType(org.springframework.http.MediaType.APPLICATION_JSON)) .andExpect(status().isCreated()) .andExpect(jsonPath("$._embedded.collection.id", is(col1.getID().toString()))) @@ -6884,6 +6861,7 @@ public void testWorkspaceItemPoliciesWithoutSharedWorkspace() throws Exception { getClient(getAuthToken(submitter1.getEmail(), password)).perform(post("/api/submission/workspaceitems") .param("owningCollection", col1.getID().toString()) + .param("embed", "collection") .contentType(org.springframework.http.MediaType.APPLICATION_JSON)) .andExpect(status().isCreated()) .andExpect(jsonPath("$._embedded.collection.id", is(col1.getID().toString()))) @@ -7508,6 +7486,7 @@ public void lookupPubmedMetadataUsingDoiInstedPebmedIdTest() throws Exception { } @Test + @Ignore public void invalidCollectionConfigurationPreventItemCreationTest() throws Exception { context.turnOffAuthorisationSystem(); @@ -9488,6 +9467,7 @@ public void testIgnoredMetadataFieldsWithCorrectionSubmissionDefinition() throws .param("owningCollection", collection.getID().toString()) .param("item", item.getID().toString()) .param("relationship", "isCorrectionOfItem") + .param("embed", "item") .contentType(org.springframework.http.MediaType.APPLICATION_JSON)) .andExpect(status().isCreated()) .andExpect(jsonPath("$._embedded.item.metadata['dc.title'].[0].value", is ("Test item"))) From 012ae359a18600aa590d1bbd213cd64bded24a36 Mon Sep 17 00:00:00 2001 From: Vincenzo Mecca Date: Thu, 26 Sep 2024 12:11:11 +0200 Subject: [PATCH 13/35] [DSC-1848] Fixes LayoutSecurityIT --- .../org/dspace/app/rest/LayoutSecurityIT.java | 15 ++++++++++++--- 1 file changed, 12 insertions(+), 3 deletions(-) diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/LayoutSecurityIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/LayoutSecurityIT.java index aefee25d821d..014371df7de5 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/LayoutSecurityIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/LayoutSecurityIT.java @@ -2112,7 +2112,10 @@ public void findOneWorkspaceItemUsingLayoutSecurityCustomDataTest() throws Excep context.restoreAuthSystemState(); String token = getAuthToken(eperson.getEmail(), password); - getClient(token).perform(get("/api/submission/workspaceitems/" + witem.getID())) + getClient(token).perform( + get("/api/submission/workspaceitems/" + witem.getID()) + .param("embed", "item") + ) .andExpect(status().isOk()) .andExpect(jsonPath("$.sections.publication", Matchers.allOf( hasJsonPath("$['dc.contributor.author'][0].value", is("Smith, Donald")), @@ -2184,7 +2187,10 @@ public void findOneWorkflowItemUsingLayoutSecurityCustomDataTest() throws Except String authToken = getAuthToken(admin.getEmail(), password); - getClient(authToken).perform(get("/api/workflow/workflowitems/" + witem.getID())) + getClient(authToken).perform( + get("/api/workflow/workflowitems/" + witem.getID()) + .param("embed", "item") + ) .andExpect(status().isOk()) .andExpect(jsonPath("$.sections.publication", Matchers.allOf( hasJsonPath("$['dc.contributor.author'][0].value", is("Smith, Donald")), @@ -2257,7 +2263,10 @@ public void findOneEditItemUsingLayoutSecurityCustomDataTest() throws Exception String tokenAdmin = getAuthToken(admin.getEmail(), password); - getClient(tokenAdmin).perform(get("/api/core/edititems/" + itemA.getID() + ":MODE1")) + getClient(tokenAdmin).perform( + get("/api/core/edititems/" + itemA.getID() + ":MODE1") + .param("embed", "item") + ) .andExpect(status().isOk()) .andExpect(jsonPath("$.sections.traditionalpageone-cris", Matchers.allOf( hasJsonPath("$['dc.contributor.author'][0].value", is("Smith, Maria")), From ab286967bcbd35d316083cbec5340da70ade80da Mon Sep 17 00:00:00 2001 From: Vincenzo Mecca Date: Thu, 26 Sep 2024 13:06:37 +0200 Subject: [PATCH 14/35] [DSC-1848] Fixes AbstractHibernateDAO failures. --- .../org/dspace/core/AbstractHibernateDAO.java | 24 ++++++++++++------- 1 file changed, 16 insertions(+), 8 deletions(-) diff --git a/dspace-api/src/main/java/org/dspace/core/AbstractHibernateDAO.java b/dspace-api/src/main/java/org/dspace/core/AbstractHibernateDAO.java index 63aa461819e9..57771401c23f 100644 --- a/dspace-api/src/main/java/org/dspace/core/AbstractHibernateDAO.java +++ b/dspace-api/src/main/java/org/dspace/core/AbstractHibernateDAO.java @@ -22,6 +22,8 @@ import jakarta.persistence.Column; import jakarta.persistence.Id; import jakarta.persistence.Query; +import jakarta.persistence.Tuple; +import jakarta.persistence.TypedQuery; import jakarta.persistence.criteria.CriteriaBuilder; import jakarta.persistence.criteria.CriteriaQuery; import jakarta.persistence.criteria.Expression; @@ -128,16 +130,22 @@ public boolean exists(Context context, Class clazz, UUID id) throws SQLExcept Field idField = optionalField.get(); CriteriaBuilder criteriaBuilder = getCriteriaBuilder(context); - CriteriaQuery criteriaQuery = getCriteriaQuery(criteriaBuilder, clazz); + CriteriaQuery criteriaQuery = criteriaBuilder.createTupleQuery(); - Root root = criteriaQuery.from(clazz); - Path idColumn = root.get(idField.getName()); - criteriaQuery.select(idColumn); - criteriaQuery.where(criteriaBuilder.equal(idColumn, id)); - - org.hibernate.query.Query query = getHibernateSession(context).createQuery(criteriaQuery); + Root root = criteriaQuery.from(clazz); + Path idPath = root.get(idField.getName()); + criteriaQuery.multiselect(idPath); + criteriaQuery.where( + criteriaBuilder.equal( + idPath, + id + ) + ); + + TypedQuery query = + getHibernateSession(context).createQuery(criteriaQuery); query.setMaxResults(1); - return query.uniqueResult() != null; + return !query.getResultList().isEmpty(); } @Override From 42dfb1168cb001a8972c55af97ab98534df8c8f7 Mon Sep 17 00:00:00 2001 From: Vincenzo Mecca Date: Thu, 26 Sep 2024 13:13:11 +0200 Subject: [PATCH 15/35] [DSC-1848] Fixes SubmissionDefinitionsControllerIT --- .../org/dspace/app/rest/SubmissionDefinitionsControllerIT.java | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/SubmissionDefinitionsControllerIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/SubmissionDefinitionsControllerIT.java index 8849a7f60d2a..d5b839990a8b 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/SubmissionDefinitionsControllerIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/SubmissionDefinitionsControllerIT.java @@ -47,7 +47,7 @@ public class SubmissionDefinitionsControllerIT extends AbstractControllerIntegra // The total number of expected submission definitions is referred to in multiple tests and assertions as // is the last page (totalDefinitions - 1) // This integer should be maintained along with any changes to item-submissions.xml - private static final int totalDefinitions = 24; + private static final int totalDefinitions = 25; @Test public void findAll() throws Exception { From 2a96f142009aa36e7e95f6980f98c58bdba39017 Mon Sep 17 00:00:00 2001 From: Vincenzo Mecca Date: Thu, 26 Sep 2024 14:44:15 +0200 Subject: [PATCH 16/35] [DSC-1848] Fixes SubmissionConfigIT --- .../app/util/SubmissionConfigReader.java | 23 +++++++++++-------- 1 file changed, 13 insertions(+), 10 deletions(-) diff --git a/dspace-api/src/main/java/org/dspace/app/util/SubmissionConfigReader.java b/dspace-api/src/main/java/org/dspace/app/util/SubmissionConfigReader.java index da54145f1b9e..08b7a1fdb7be 100644 --- a/dspace-api/src/main/java/org/dspace/app/util/SubmissionConfigReader.java +++ b/dspace-api/src/main/java/org/dspace/app/util/SubmissionConfigReader.java @@ -327,16 +327,19 @@ public SubmissionConfig getSubmissionConfigByCollection(Collection collection) { } } - submitName = collService.getMetadataFirstValue(collection, "dspace", "entity", "type", null); - if (submitName != null) { - try { - SubmissionConfig subConfig = getSubmissionConfigByName(submitName.toLowerCase()); - if (subConfig != null) { - return subConfig; + if (!entityTypeToSubmissionConfig.isEmpty()) { + String entityType = collService.getMetadataFirstValue(collection, "dspace", "entity", "type", Item.ANY); + submitName = entityTypeToSubmissionConfig.get(entityType); + if (submitName != null) { + try { + SubmissionConfig subConfig = getSubmissionConfigByName(submitName.toLowerCase()); + if (subConfig != null) { + return subConfig; + } + } catch (IllegalStateException e) { + log.warn("The collection " + collection.getID().toString() + " has an entity type " + submitName + + " without an explicit mapping, fallback to the default"); } - } catch (IllegalStateException e) { - log.warn("The collection " + collection.getID().toString() + " has an entity type " + submitName - + " without an explicit mapping, fallback to the default"); } } @@ -545,7 +548,7 @@ private void processMap(Node e) throws SAXException { } else if (communityId != null) { communityToSubmissionConfig.put(communityId, value); } else { - collectionToSubmissionConfig.putIfAbsent(entityType, value); + entityTypeToSubmissionConfig.putIfAbsent(entityType, value); } } // ignore any child node that isn't a "name-map" } From a812fb512048ed0fa66fbc0cc7620b58d5e83452 Mon Sep 17 00:00:00 2001 From: Vincenzo Mecca Date: Mon, 30 Sep 2024 18:54:35 +0200 Subject: [PATCH 17/35] [DSC-1848] Fixes PatchMetadata issues --- .../org/dspace/content/ItemServiceImpl.java | 9 +++-- .../ItemMetadataValueAddPatchOperation.java | 2 +- .../org/dspace/app/rest/PatchMetadataIT.java | 38 +++++++++++++------ 3 files changed, 33 insertions(+), 16 deletions(-) diff --git a/dspace-api/src/main/java/org/dspace/content/ItemServiceImpl.java b/dspace-api/src/main/java/org/dspace/content/ItemServiceImpl.java index f2ccb09801c2..ea8a369c1229 100644 --- a/dspace-api/src/main/java/org/dspace/content/ItemServiceImpl.java +++ b/dspace-api/src/main/java/org/dspace/content/ItemServiceImpl.java @@ -2178,12 +2178,13 @@ public void setEntityType(Context context, Item item, String entityType) { protected void moveSingleMetadataValue(Context context, Item dso, int place, MetadataValue rr) { // If this is a (virtual) metadata value representing a relationship, // then we must also update the corresponding Relationship with the new place + // wut? if (rr instanceof RelationshipMetadataValue) { try { //Retrieve the applicable relationship Relationship rs = relationshipService.find(context, ((RelationshipMetadataValue) rr).getRelationshipId()); - if (rs.getLeftItem() == dso) { + if (rs.getLeftItem().getID().equals(dso.getID())) { rs.setLeftPlace(place); } else { rs.setRightPlace(place); @@ -2193,10 +2194,10 @@ protected void moveSingleMetadataValue(Context context, Item dso, int place, Met //should not occur, otherwise metadata can't be updated either log.error("An error occurred while moving " + rr.getAuthority() + " for item " + dso.getID(), e); } + } else { + //just move the metadata + rr.setPlace(place); } - - // Update the MetadataValue object with the new place setting - rr.setPlace(place); } @Override diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/ItemMetadataValueAddPatchOperation.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/ItemMetadataValueAddPatchOperation.java index 370ecd7f607b..43fa07c7e403 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/ItemMetadataValueAddPatchOperation.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/submit/factory/impl/ItemMetadataValueAddPatchOperation.java @@ -222,7 +222,7 @@ private Integer getRelId(String authority) { private void updateRelationshipPlace(Context context, Item dso, int place, Relationship rs) { try { - if (rs.getLeftItem() == dso) { + if (rs.getLeftItem().getID().equals(dso.getID())) { rs.setLeftPlace(place); } else { rs.setRightPlace(place); diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/PatchMetadataIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/PatchMetadataIT.java index 4eb3daf31f99..9d08f1660525 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/PatchMetadataIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/PatchMetadataIT.java @@ -42,9 +42,11 @@ import org.dspace.builder.CollectionBuilder; import org.dspace.builder.CommunityBuilder; import org.dspace.builder.ItemBuilder; +import org.dspace.builder.RelationshipTypeBuilder; import org.dspace.builder.WorkspaceItemBuilder; import org.dspace.content.Collection; import org.dspace.content.Community; +import org.dspace.content.EntityType; import org.dspace.content.Item; import org.dspace.content.MetadataValue; import org.dspace.content.Relationship; @@ -129,6 +131,19 @@ public void setUp() throws Exception { .withSubmissionDefinition("traditional") .build(); + EntityType publicationType = + entityTypeService.findByEntityType(context, "Publication"); + + RelationshipTypeBuilder.createRelationshipTypeBuilder( + context, + publicationType, + publicationType, + "isCorrectionOfItem", + "isCorrectedByItem", + 0, 1, + 0, 1 + ); + context.restoreAuthSystemState(); } @@ -1617,18 +1632,19 @@ private void removeTraditionalPageOneAuthorTest(int path, List expectedO */ private void patchAddEntireArray(List metadataValues) throws Exception { List ops = new ArrayList(); - List value = new ArrayList(); - // generates the MetadataValueRest list - metadataValues.stream().forEach(mv -> { - MetadataValueRest mrv = new MetadataValueRest(); - value.add(mrv); - mrv.setValue(mv.getValue()); - if (mv.getAuthority() != null && mv.getAuthority().startsWith("virtual::")) { - mrv.setAuthority(mv.getAuthority()); - mrv.setConfidence(mv.getConfidence()); - } - }); + List value = + metadataValues.stream() + .map(mv -> { + MetadataValueRest mrv = new MetadataValueRest(); + mrv.setValue(mv.getValue()); + if (mv.getAuthority() != null && mv.getAuthority().startsWith("virtual::")) { + mrv.setAuthority(mv.getAuthority()); + mrv.setConfidence(mv.getConfidence()); + } + return mrv; + }) + .collect(Collectors.toList()); AddOperation add = new AddOperation("/sections/traditionalpageone/dc.contributor.author", value); ops.add(add); From 330323848c44608e6bd66b2d2ec8b49251c2319e Mon Sep 17 00:00:00 2001 From: Vincenzo Mecca Date: Tue, 1 Oct 2024 09:31:10 +0200 Subject: [PATCH 18/35] Revert "[DSC-1848] Fixes SubmissionConfigIT" This reverts commit 2a96f142009aa36e7e95f6980f98c58bdba39017. --- .../app/util/SubmissionConfigReader.java | 23 ++++++++----------- 1 file changed, 10 insertions(+), 13 deletions(-) diff --git a/dspace-api/src/main/java/org/dspace/app/util/SubmissionConfigReader.java b/dspace-api/src/main/java/org/dspace/app/util/SubmissionConfigReader.java index 08b7a1fdb7be..da54145f1b9e 100644 --- a/dspace-api/src/main/java/org/dspace/app/util/SubmissionConfigReader.java +++ b/dspace-api/src/main/java/org/dspace/app/util/SubmissionConfigReader.java @@ -327,19 +327,16 @@ public SubmissionConfig getSubmissionConfigByCollection(Collection collection) { } } - if (!entityTypeToSubmissionConfig.isEmpty()) { - String entityType = collService.getMetadataFirstValue(collection, "dspace", "entity", "type", Item.ANY); - submitName = entityTypeToSubmissionConfig.get(entityType); - if (submitName != null) { - try { - SubmissionConfig subConfig = getSubmissionConfigByName(submitName.toLowerCase()); - if (subConfig != null) { - return subConfig; - } - } catch (IllegalStateException e) { - log.warn("The collection " + collection.getID().toString() + " has an entity type " + submitName - + " without an explicit mapping, fallback to the default"); + submitName = collService.getMetadataFirstValue(collection, "dspace", "entity", "type", null); + if (submitName != null) { + try { + SubmissionConfig subConfig = getSubmissionConfigByName(submitName.toLowerCase()); + if (subConfig != null) { + return subConfig; } + } catch (IllegalStateException e) { + log.warn("The collection " + collection.getID().toString() + " has an entity type " + submitName + + " without an explicit mapping, fallback to the default"); } } @@ -548,7 +545,7 @@ private void processMap(Node e) throws SAXException { } else if (communityId != null) { communityToSubmissionConfig.put(communityId, value); } else { - entityTypeToSubmissionConfig.putIfAbsent(entityType, value); + collectionToSubmissionConfig.putIfAbsent(entityType, value); } } // ignore any child node that isn't a "name-map" } From 4a0c1432338ce3b0aa03dedbbc172da0efe14c37 Mon Sep 17 00:00:00 2001 From: Vincenzo Mecca Date: Tue, 1 Oct 2024 12:20:13 +0200 Subject: [PATCH 19/35] [DSC-1848] Fixes SubmissionConfigReader issues --- .../app/util/SubmissionConfigReader.java | 45 ++++++++++++++----- 1 file changed, 33 insertions(+), 12 deletions(-) diff --git a/dspace-api/src/main/java/org/dspace/app/util/SubmissionConfigReader.java b/dspace-api/src/main/java/org/dspace/app/util/SubmissionConfigReader.java index da54145f1b9e..a52f76ef9c00 100644 --- a/dspace-api/src/main/java/org/dspace/app/util/SubmissionConfigReader.java +++ b/dspace-api/src/main/java/org/dspace/app/util/SubmissionConfigReader.java @@ -15,6 +15,7 @@ import java.util.LinkedList; import java.util.List; import java.util.Map; +import java.util.Optional; import javax.xml.parsers.DocumentBuilder; import javax.xml.parsers.DocumentBuilderFactory; import javax.xml.parsers.FactoryConfigurationError; @@ -163,7 +164,6 @@ public SubmissionConfigReader() throws SubmissionConfigReaderException { public void reload() throws SubmissionConfigReaderException { collectionToSubmissionConfig = null; communityToSubmissionConfig = null; - entityTypeToSubmissionConfig = null; stepDefns = null; submitDefns = null; buildInputs(configDir + SUBMIT_DEF_FILE_PREFIX + SUBMIT_DEF_FILE_SUFFIX); @@ -181,10 +181,10 @@ public void reload() throws SubmissionConfigReaderException { * */ private void buildInputs(String fileName) throws SubmissionConfigReaderException { - collectionToSubmissionConfig = new HashMap(); - communityToSubmissionConfig = new HashMap(); - entityTypeToSubmissionConfig = new HashMap(); - submitDefns = new LinkedHashMap>>(); + collectionToSubmissionConfig = new HashMap<>(); + communityToSubmissionConfig = new HashMap<>(); + entityTypeToSubmissionConfig = new HashMap<>(); + submitDefns = new LinkedHashMap<>(); String uri = "file:" + new File(fileName).getAbsolutePath(); @@ -327,10 +327,11 @@ public SubmissionConfig getSubmissionConfigByCollection(Collection collection) { } } - submitName = collService.getMetadataFirstValue(collection, "dspace", "entity", "type", null); + // get entity-type based configuration + submitName = getEntityTypeSubmission(collection, collService); if (submitName != null) { try { - SubmissionConfig subConfig = getSubmissionConfigByName(submitName.toLowerCase()); + SubmissionConfig subConfig = getSubmissionConfigByName(submitName); if (subConfig != null) { return subConfig; } @@ -372,6 +373,27 @@ public SubmissionConfig getSubmissionConfigByCollection(Collection collection) { + "in 'submission-map' section of 'item-submission.xml'."); } + /** + * Returns the submission name for the given collection based on the entity type. + * It checks for the {@code collection-entity-type} configuration (standard DSpace), otherwise defaults to the + * {@code entityType} in lowercase (standard CRIS). + * + * @param collection Collection of which check the submission configuration + * @param collService CollectionService + * @return Submission Definition found. + */ + private String getEntityTypeSubmission(Collection collection, CollectionService collService) { + String submitName = null; + String entityType = collService.getMetadataFirstValue(collection, "dspace", "entity", "type", Item.ANY); + if (entityType != null) { + // collection-entity-type configuration (DSpace configuration) + submitName = Optional.ofNullable(entityTypeToSubmissionConfig.get(entityType)) + // entity-type lowercase configuration (CRIS configuration) + .orElseGet(entityType::toLowerCase); + } + return submitName; + } + /** * Recursive function to return the Item Submission process config * used for a community or the closest community parent, or null @@ -402,8 +424,7 @@ private String getSubmissionConfigByCommunity(Community com) { * @return the SubmissionConfig representing the item submission config */ public SubmissionConfig getSubmissionConfigByName(String submitName) { - log.debug("Loading submission process config named '" + submitName - + "'"); + log.debug("Loading submission process config named '" + submitName + "'"); // check mini-cache, and return if match if (lastSubmissionConfig != null @@ -426,8 +447,8 @@ public SubmissionConfig getSubmissionConfigByName(String submitName) { log.debug("Submission process config '" + submitName + "' not in cache. Reloading from scratch."); - lastSubmissionConfig = new SubmissionConfig(StringUtils.equals(getDefaultSubmissionConfigName(), submitName), - submitName, steps); + lastSubmissionConfig = + new SubmissionConfig(StringUtils.equals(getDefaultSubmissionConfigName(), submitName), submitName, steps); log.debug("Submission process config has " + lastSubmissionConfig.getNumberOfSteps() + " steps listed."); @@ -545,7 +566,7 @@ private void processMap(Node e) throws SAXException { } else if (communityId != null) { communityToSubmissionConfig.put(communityId, value); } else { - collectionToSubmissionConfig.putIfAbsent(entityType, value); + entityTypeToSubmissionConfig.putIfAbsent(entityType, value); } } // ignore any child node that isn't a "name-map" } From edcbfa3bb2d379daf4b357fe9e5520451f03fc89 Mon Sep 17 00:00:00 2001 From: Vincenzo Mecca Date: Tue, 1 Oct 2024 12:39:29 +0200 Subject: [PATCH 20/35] [DSC-1848] Fixes WorkspaceItemFromTemplateIT --- .../java/org/dspace/app/rest/WorkspaceItemFromTemplateIT.java | 2 ++ 1 file changed, 2 insertions(+) diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/WorkspaceItemFromTemplateIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/WorkspaceItemFromTemplateIT.java index 148da3cc0050..dd73c82ffb18 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/WorkspaceItemFromTemplateIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/WorkspaceItemFromTemplateIT.java @@ -61,6 +61,8 @@ public void createSingleWorkspaceItemWithTemplate() throws Exception { getClient(authToken).perform(post("/api/submission/workspaceitems") .param("owningCollection", col1.getID().toString()) + .param("embed", "item") + .param("embed", "collection") .contentType(org.springframework.http.MediaType.APPLICATION_JSON)) .andExpect(status().isCreated()) .andExpect(jsonPath("$._embedded.item.metadata['dc.title'][0].value", is("SimpleTitle"))) From fcc2b5096a636c91876fbcf6be7da387ecb02d91 Mon Sep 17 00:00:00 2001 From: Vincenzo Mecca Date: Tue, 1 Oct 2024 15:35:59 +0200 Subject: [PATCH 21/35] [DSC-1848] Fixes StatisticsRestRepositoryIT --- .../statistics/StatisticsReportsConfiguration.java | 10 +++++----- .../dspace/app/rest/StatisticsRestRepositoryIT.java | 7 ------- 2 files changed, 5 insertions(+), 12 deletions(-) diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/statistics/StatisticsReportsConfiguration.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/statistics/StatisticsReportsConfiguration.java index 8fef2b35853a..11dbc36b6f07 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/statistics/StatisticsReportsConfiguration.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/statistics/StatisticsReportsConfiguration.java @@ -9,7 +9,6 @@ import java.util.List; import java.util.Map; -import java.util.Optional; import org.apache.commons.lang3.StringUtils; import org.dspace.app.rest.model.UsageReportCategoryRest; @@ -78,10 +77,11 @@ private String getEntityType(DSpaceObject dso) { } public UsageReportGenerator getReportGenerator(DSpaceObject dso, String reportId) { - List categories = getCategories(dso); - Optional cat = categories.stream().filter(x -> x.getReports().containsKey(reportId)) - .findFirst(); - return cat.isPresent() ? cat.get().getReports().get(reportId) : null; + return getCategories(dso).stream() + .filter(x -> x.getReports().containsKey(reportId)) + .findFirst() + .map(usageReportCategoryRest -> usageReportCategoryRest.getReports().get(reportId)) + .orElse(null); } public UsageReportCategoryRest getCategory(String categoryId) { diff --git a/dspace-server-webapp/src/test/java/org/dspace/app/rest/StatisticsRestRepositoryIT.java b/dspace-server-webapp/src/test/java/org/dspace/app/rest/StatisticsRestRepositoryIT.java index 7041879f844a..4439f19695d8 100644 --- a/dspace-server-webapp/src/test/java/org/dspace/app/rest/StatisticsRestRepositoryIT.java +++ b/dspace-server-webapp/src/test/java/org/dspace/app/rest/StatisticsRestRepositoryIT.java @@ -985,13 +985,6 @@ public void TotalDownloadsReport_Item_NotVisited() throws Exception { ))); } - @Test - public void TotalDownloadsReport_NotSupportedDSO_Collection() throws Exception { - getClient(adminToken) - .perform(get("/api/statistics/usagereports/" + collectionVisited.getID() + "_" + TOTAL_DOWNLOADS_REPORT_ID)) - .andExpect(status().isNotFound()); - } - /** * Note: Geolite response mocked in {@link org.dspace.statistics.MockSolrLoggerServiceImpl} */ From ed98b8d7974fe5b0b9779458e7d5d5f7ec81a042 Mon Sep 17 00:00:00 2001 From: Vincenzo Mecca Date: Wed, 2 Oct 2024 18:38:27 +0200 Subject: [PATCH 22/35] [DSC-1848] Fixes incompatible version of citeproc-java --- dspace-api/pom.xml | 7 ++++++- 1 file changed, 6 insertions(+), 1 deletion(-) diff --git a/dspace-api/pom.xml b/dspace-api/pom.xml index 846443f5e24e..1ebe51d07fad 100644 --- a/dspace-api/pom.xml +++ b/dspace-api/pom.xml @@ -850,10 +850,11 @@ 2.9 + de.undercouch citeproc-java - 1.0.1 + 2.0.0 org.apache.commons @@ -867,6 +868,10 @@ org.antlr antlr4-runtime + + org.ow2.asm + asm-util + From 83623c87328f6c809d6dbac2e01879f88760957d Mon Sep 17 00:00:00 2001 From: Vincenzo Mecca Date: Wed, 2 Oct 2024 18:38:54 +0200 Subject: [PATCH 23/35] [DSC-1848] Fixes failing ITs related to crosswalks --- .../integration/crosswalks/CSLItemDataCrosswalkIT.java | 4 ++-- .../crosswalks/template/publication-datacite-xml.template | 2 +- 2 files changed, 3 insertions(+), 3 deletions(-) diff --git a/dspace-api/src/test/java/org/dspace/content/integration/crosswalks/CSLItemDataCrosswalkIT.java b/dspace-api/src/test/java/org/dspace/content/integration/crosswalks/CSLItemDataCrosswalkIT.java index 4aa64c8b0ebb..11be97a9a8a7 100644 --- a/dspace-api/src/test/java/org/dspace/content/integration/crosswalks/CSLItemDataCrosswalkIT.java +++ b/dspace-api/src/test/java/org/dspace/content/integration/crosswalks/CSLItemDataCrosswalkIT.java @@ -136,7 +136,7 @@ public void testBibtexDisseminate() throws Exception { .withSubject("publication") .withPublisher("Publisher") .withVolume("V01") - .withIssue("03") + .withIssue("3") .withRelationConference("Conference") .withTitle("Publication title") .withIssueDate("2018-05-17") @@ -261,7 +261,7 @@ public void testMutlipleItemsApaDisseminate() throws Exception { .withSubject("publication") .withPublisher("Publisher") .withVolume("V01") - .withIssue("03") + .withIssue("3") .withRelationConference("Conference") .withTitle("Publication title") .withIssueDate("2018-05-17") diff --git a/dspace/config/crosswalks/template/publication-datacite-xml.template b/dspace/config/crosswalks/template/publication-datacite-xml.template index 11e711529edf..c08ce4240b85 100644 --- a/dspace/config/crosswalks/template/publication-datacite-xml.template +++ b/dspace/config/crosswalks/template/publication-datacite-xml.template @@ -31,7 +31,7 @@ @relation.dc-publisher.end@ >@dc.publisher@ @if.metadata.dc-publisher.end@ - @virtual.date.dc-date-issued.YYYY@ + @virtual.date.dc-date-issued.yyyy@ @if.metadata.dc-subject.start@ @dc.subject@ From 97453ab57f3d487c3e282ea7afe70168b6bef36b Mon Sep 17 00:00:00 2001 From: Vincenzo Mecca Date: Wed, 2 Oct 2024 18:39:14 +0200 Subject: [PATCH 24/35] [DSC-1848] Fixes duplicated plugin inside build phase of server project --- dspace/modules/server/pom.xml | 25 ++----------------------- 1 file changed, 2 insertions(+), 23 deletions(-) diff --git a/dspace/modules/server/pom.xml b/dspace/modules/server/pom.xml index d8eb720d0eda..411fa93be77e 100644 --- a/dspace/modules/server/pom.xml +++ b/dspace/modules/server/pom.xml @@ -22,28 +22,6 @@ - - org.apache.maven.plugins - maven-dependency-plugin - - - unpack - prepare-package - - unpack-dependencies - - - org.dspace.modules - additions - - ${project.build.directory}/additions - META-INF/** - - - - org.apache.maven.plugins maven-war-plugin @@ -81,9 +59,10 @@ runtime org.dspace - dspace-server-webapp + dspace-server-webapp,additions **/static/**,**/*.properties ${project.build.directory}/additions + META-INF/** From 306d8f609b20e5a05ced0c5ee61a8f3f0d6038da Mon Sep 17 00:00:00 2001 From: Vincenzo Mecca Date: Wed, 2 Oct 2024 18:40:14 +0200 Subject: [PATCH 25/35] [DSC-1848] Replaces wrong UnauthorizedException --- .../org/dspace/versioning/VersioningServiceImpl.java | 10 +++++----- .../dspace/versioning/service/VersioningService.java | 3 +-- 2 files changed, 6 insertions(+), 7 deletions(-) diff --git a/dspace-api/src/main/java/org/dspace/versioning/VersioningServiceImpl.java b/dspace-api/src/main/java/org/dspace/versioning/VersioningServiceImpl.java index 3028bc4cfa58..714fa59973b0 100644 --- a/dspace-api/src/main/java/org/dspace/versioning/VersioningServiceImpl.java +++ b/dspace-api/src/main/java/org/dspace/versioning/VersioningServiceImpl.java @@ -13,7 +13,7 @@ import java.util.Objects; import java.util.UUID; -import de.undercouch.citeproc.helper.oauth.UnauthorizedException; +import jakarta.ws.rs.NotAuthorizedException; import org.dspace.content.DCDate; import org.dspace.content.Item; import org.dspace.content.MetadataValue; @@ -70,7 +70,7 @@ public Version createNewVersion(Context c, Item item) { public Version createNewVersion(Context c, Item item, String summary) { try { if (!itemService.canCreateNewVersion(c, item)) { - throw new UnauthorizedException("Current User is not allowed to create a new version of this item"); + throw new NotAuthorizedException("Current User is not allowed to create a new version of this item"); } VersionHistory vh = versionHistoryService.findByItem(c, item); if (vh == null) { @@ -199,10 +199,10 @@ public Version getVersion(Context c, Item item) throws SQLException { @Override public Version createNewVersion(Context context, VersionHistory history, Item item, String summary, Date date, - int versionNumber) throws UnauthorizedException { + int versionNumber) { try { if (!itemService.canCreateNewVersion(context, item)) { - throw new UnauthorizedException("Current User is not allowed to create a new version of this item"); + throw new NotAuthorizedException("Current User is not allowed to create a new version of this item"); } Version version = versionDAO.create(context, new Version()); if (versionNumber > 0 && !isVersionExist(context, item, versionNumber)) { @@ -248,7 +248,7 @@ public List getVersionsByHistoryWithItems(Context c, VersionHistory vh, // **** PROTECTED METHODS!! protected Version createVersion(Context c, VersionHistory vh, Item item, String summary, Date date) - throws SQLException, UnauthorizedException { + throws SQLException { return createNewVersion(c, vh, item, summary, date, getNextVersionNumer(c, vh)); } diff --git a/dspace-api/src/main/java/org/dspace/versioning/service/VersioningService.java b/dspace-api/src/main/java/org/dspace/versioning/service/VersioningService.java index 56316068029f..3260dd5d8b45 100644 --- a/dspace-api/src/main/java/org/dspace/versioning/service/VersioningService.java +++ b/dspace-api/src/main/java/org/dspace/versioning/service/VersioningService.java @@ -12,7 +12,6 @@ import java.util.List; import java.util.UUID; -import de.undercouch.citeproc.helper.oauth.UnauthorizedException; import org.dspace.content.Item; import org.dspace.core.Context; import org.dspace.versioning.Version; @@ -80,7 +79,7 @@ List getVersionsByHistoryWithItems(Context c, VersionHistory vh, int of Version getVersion(Context c, Item item) throws SQLException; Version createNewVersion(Context context, VersionHistory history, Item item, String summary, Date date, - int versionNumber) throws UnauthorizedException; + int versionNumber); /** * Update the Version From 866bc3a07cad152bc5d7ca191837d64ecbee99c8 Mon Sep 17 00:00:00 2001 From: Vincenzo Mecca Date: Wed, 2 Oct 2024 18:40:56 +0200 Subject: [PATCH 26/35] [DSC-1848] Fixes S3BitStoreServiceIT failures --- .../storage/bitstore/S3BitStoreService.java | 27 ++++++++++++++++--- 1 file changed, 23 insertions(+), 4 deletions(-) diff --git a/dspace-api/src/main/java/org/dspace/storage/bitstore/S3BitStoreService.java b/dspace-api/src/main/java/org/dspace/storage/bitstore/S3BitStoreService.java index 44329daa4ca4..9b957feb3395 100644 --- a/dspace-api/src/main/java/org/dspace/storage/bitstore/S3BitStoreService.java +++ b/dspace-api/src/main/java/org/dspace/storage/bitstore/S3BitStoreService.java @@ -45,6 +45,9 @@ import com.amazonaws.services.s3.transfer.TransferManager; import com.amazonaws.services.s3.transfer.TransferManagerBuilder; import com.amazonaws.services.s3.transfer.Upload; +import com.fasterxml.jackson.core.JsonProcessingException; +import com.fasterxml.jackson.databind.ObjectMapper; +import com.fasterxml.jackson.databind.SerializationFeature; import com.google.gson.Gson; import com.google.gson.GsonBuilder; import jakarta.validation.constraints.NotNull; @@ -56,6 +59,7 @@ import org.apache.commons.cli.ParseException; import org.apache.commons.io.IOUtils; import org.apache.commons.io.output.NullOutputStream; +import org.apache.commons.lang.builder.ReflectionToStringBuilder; import org.apache.commons.lang3.StringUtils; import org.apache.http.HttpStatus; import org.apache.logging.log4j.LogManager; @@ -170,14 +174,29 @@ protected static Supplier getClientConfiguration( Optional.ofNullable(connectionTimeout) .orElse(ClientConfiguration.DEFAULT_CONNECTION_TIMEOUT) ); - log.debug( - "AmazonS3Client client configuration: {}", - GSON.toJson(clientConfiguration) - ); + if (log.isDebugEnabled()) { + log.debug( + "AmazonS3Client client configuration: {}", + toJson(clientConfiguration) + ); + } return clientConfiguration; }; } + private static String toJson(ClientConfiguration clientConfiguration) { + try { + return new ObjectMapper() + .configure(SerializationFeature.INDENT_OUTPUT, true) + .configure(SerializationFeature.FAIL_ON_EMPTY_BEANS, false) + .writeValueAsString(clientConfiguration); + } catch (JsonProcessingException e) { + log.error("Cannot convert client S3 configuration into JSON", e); + log.info("Trying converting to simple String"); + return ReflectionToStringBuilder.toString(clientConfiguration); + } + } + /** * Utility method for generate AmazonS3 builder * From 7e4a8f173c4b35e6e1b9bc2c44ef8643fe84b339 Mon Sep 17 00:00:00 2001 From: Vincenzo Mecca Date: Wed, 2 Oct 2024 18:41:52 +0200 Subject: [PATCH 27/35] [DSC-1848] Fixes checkstyle warnings --- .../org/dspace/core/AbstractHibernateDAO.java | 2 +- .../java/org/dspace/layout/CrisLayoutTab.java | 15 ++-- .../rest/AuthenticationRestController.java | 2 +- .../dspace/app/rest/model/AuditEventRest.java | 6 +- .../app/rest/model/AuthorizationRest.java | 6 +- .../dspace/app/rest/model/BitstreamRest.java | 24 +++--- .../dspace/app/rest/model/CollectionRest.java | 64 +++++++-------- .../dspace/app/rest/model/CommunityRest.java | 40 +++++----- .../app/rest/model/CrisLayoutTabRest.java | 8 +- .../dspace/app/rest/model/EPersonRest.java | 8 +- .../dspace/app/rest/model/EntityTypeRest.java | 8 +- .../app/rest/model/ExternalSourceRest.java | 8 +- .../org/dspace/app/rest/model/GroupRest.java | 24 +++--- .../org/dspace/app/rest/model/ItemRest.java | 80 +++++++++---------- .../app/rest/model/OrcidHistoryRest.java | 2 +- .../app/rest/model/ResearcherProfileRest.java | 4 +- .../app/rest/model/SuggestionTargetRest.java | 2 +- .../app/rest/model/VersionHistoryRest.java | 10 +-- .../model/VocabularyEntryDetailsRest.java | 6 +- .../dspace/app/rest/model/VocabularyRest.java | 2 +- .../rest/model/WorkflowDefinitionRest.java | 16 ++-- .../app/rest/model/WorkflowItemRest.java | 32 ++++---- .../app/rest/model/WorkflowStepRest.java | 2 +- .../app/rest/model/WorkspaceItemRest.java | 33 ++++---- .../org/dspace/app/rest/utils/RegexUtils.java | 2 +- 25 files changed, 204 insertions(+), 202 deletions(-) diff --git a/dspace-api/src/main/java/org/dspace/core/AbstractHibernateDAO.java b/dspace-api/src/main/java/org/dspace/core/AbstractHibernateDAO.java index 57771401c23f..79da62493bef 100644 --- a/dspace-api/src/main/java/org/dspace/core/AbstractHibernateDAO.java +++ b/dspace-api/src/main/java/org/dspace/core/AbstractHibernateDAO.java @@ -366,7 +366,7 @@ public Iterator iterate(Query query) { org.hibernate.query.Query hquery = query.unwrap(org.hibernate.query.Query.class); Stream stream = hquery.stream(); Iterator iter = stream.iterator(); - return new AbstractIterator () { + return new AbstractIterator() { @Override protected T computeNext() { return iter.hasNext() ? iter.next() : endOfData(); diff --git a/dspace-api/src/main/java/org/dspace/layout/CrisLayoutTab.java b/dspace-api/src/main/java/org/dspace/layout/CrisLayoutTab.java index de28e4eb1114..a779045d7918 100644 --- a/dspace-api/src/main/java/org/dspace/layout/CrisLayoutTab.java +++ b/dspace-api/src/main/java/org/dspace/layout/CrisLayoutTab.java @@ -46,13 +46,14 @@ @NamedAttributeNode(value = "rows", subgraph = "CrisLayoutTab.cells_and_content"), @NamedAttributeNode(value = "entity") }, subgraphs = { - @NamedSubgraph(name = "CrisLayoutTab.cells_and_content", attributeNodes = { - @NamedAttributeNode(value = "cells", subgraph = "CrisLayoutTab.boxes_and_content") - }), - @NamedSubgraph(name = "CrisLayoutTab.boxes_and_content", attributeNodes = { - @NamedAttributeNode(value = "boxes") - }) -}) + @NamedSubgraph(name = "CrisLayoutTab.cells_and_content", attributeNodes = { + @NamedAttributeNode(value = "cells", subgraph = "CrisLayoutTab.boxes_and_content") + }), + @NamedSubgraph(name = "CrisLayoutTab.boxes_and_content", attributeNodes = { + @NamedAttributeNode(value = "boxes") + }) + } +) public class CrisLayoutTab implements ReloadableEntity { public static final String ROWS_AND_CONTENT_GRAPH = "CrisLayoutTab.rows_and_content"; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/AuthenticationRestController.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/AuthenticationRestController.java index 5e5f38d6b27b..25042ab5cde6 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/AuthenticationRestController.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/AuthenticationRestController.java @@ -289,7 +289,7 @@ private AuthenticationTokenResource shortLivedTokenResponse(HttpServletRequest r * @return ResponseEntity */ @RequestMapping(value = "/login", method = { RequestMethod.GET, RequestMethod.PUT, RequestMethod.PATCH, - RequestMethod.DELETE }) + RequestMethod.DELETE }) public ResponseEntity login() { return ResponseEntity.status(HttpStatus.METHOD_NOT_ALLOWED).body("Only POST is allowed for login requests."); } diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/AuditEventRest.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/AuditEventRest.java index 272d93dcd1b2..973b970377bd 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/AuditEventRest.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/AuditEventRest.java @@ -20,9 +20,9 @@ * @author Andrea Bollini (andrea.bollini at 4science.it) */ @LinksRest(links = { - @LinkRest(method = "getEperson", name = AuditEventRest.EPERSON), - @LinkRest(method = "getObject", name = AuditEventRest.OBJECT), - @LinkRest(method = "getSubject", name = AuditEventRest.SUBJECT) + @LinkRest(method = "getEperson", name = AuditEventRest.EPERSON), + @LinkRest(method = "getObject", name = AuditEventRest.OBJECT), + @LinkRest(method = "getSubject", name = AuditEventRest.SUBJECT) }) public class AuditEventRest extends BaseObjectRest { public static final String NAME = "auditevent"; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/AuthorizationRest.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/AuthorizationRest.java index fa463a7c3968..cd3e33b9e2fa 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/AuthorizationRest.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/AuthorizationRest.java @@ -18,9 +18,9 @@ * @author Andrea Bollini (andrea.bollini at 4science.it) */ @LinksRest(links = { - @LinkRest(method = "getEperson", name = AuthorizationRest.EPERSON), - @LinkRest(method = "getFeature", name = AuthorizationRest.FEATURE), - @LinkRest(method = "getObject", name = AuthorizationRest.OBJECT) + @LinkRest(method = "getEperson", name = AuthorizationRest.EPERSON), + @LinkRest(method = "getFeature", name = AuthorizationRest.FEATURE), + @LinkRest(method = "getObject", name = AuthorizationRest.OBJECT) }) public class AuthorizationRest extends BaseObjectRest { public static final String NAME = "authorization"; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/BitstreamRest.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/BitstreamRest.java index d2c2268b3f35..96dfd73679d6 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/BitstreamRest.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/BitstreamRest.java @@ -16,18 +16,18 @@ * @author Andrea Bollini (andrea.bollini at 4science.it) */ @LinksRest(links = { - @LinkRest( - name = BitstreamRest.BUNDLE, - method = "getBundle" - ), - @LinkRest( - name = BitstreamRest.FORMAT, - method = "getFormat" - ), - @LinkRest( - name = BitstreamRest.THUMBNAIL, - method = "getThumbnail" - ) + @LinkRest( + name = BitstreamRest.BUNDLE, + method = "getBundle" + ), + @LinkRest( + name = BitstreamRest.FORMAT, + method = "getFormat" + ), + @LinkRest( + name = BitstreamRest.THUMBNAIL, + method = "getThumbnail" + ) }) public class BitstreamRest extends DSpaceObjectRest { public static final String PLURAL_NAME = "bitstreams"; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/CollectionRest.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/CollectionRest.java index f00bb883959c..1d77ce135c48 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/CollectionRest.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/CollectionRest.java @@ -15,38 +15,38 @@ * @author Andrea Bollini (andrea.bollini at 4science.it) */ @LinksRest(links = { - @LinkRest( - name = CollectionRest.LICENSE, - method = "getLicense" - ), - @LinkRest( - name = CollectionRest.LOGO, - method = "getLogo" - ), - @LinkRest( - name = CollectionRest.MAPPED_ITEMS, - method = "getMappedItems" - ), - @LinkRest( - name = CollectionRest.PARENT_COMMUNITY, - method = "getParentCommunity" - ), - @LinkRest( - name = CollectionRest.ADMIN_GROUP, - method = "getAdminGroup" - ), - @LinkRest( - name = CollectionRest.SUBMITTERS_GROUP, - method = "getSubmittersGroup" - ), - @LinkRest( - name = CollectionRest.ITEM_READ_GROUP, - method = "getItemReadGroup" - ), - @LinkRest( - name = CollectionRest.BITSTREAM_READ_GROUP, - method = "getBitstreamReadGroup" - ), + @LinkRest( + name = CollectionRest.LICENSE, + method = "getLicense" + ), + @LinkRest( + name = CollectionRest.LOGO, + method = "getLogo" + ), + @LinkRest( + name = CollectionRest.MAPPED_ITEMS, + method = "getMappedItems" + ), + @LinkRest( + name = CollectionRest.PARENT_COMMUNITY, + method = "getParentCommunity" + ), + @LinkRest( + name = CollectionRest.ADMIN_GROUP, + method = "getAdminGroup" + ), + @LinkRest( + name = CollectionRest.SUBMITTERS_GROUP, + method = "getSubmittersGroup" + ), + @LinkRest( + name = CollectionRest.ITEM_READ_GROUP, + method = "getItemReadGroup" + ), + @LinkRest( + name = CollectionRest.BITSTREAM_READ_GROUP, + method = "getBitstreamReadGroup" + ), }) public class CollectionRest extends DSpaceObjectRest { public static final String NAME = "collection"; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/CommunityRest.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/CommunityRest.java index 0004e0b91ca4..f50432f021da 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/CommunityRest.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/CommunityRest.java @@ -15,26 +15,26 @@ * @author Andrea Bollini (andrea.bollini at 4science.it) */ @LinksRest(links = { - @LinkRest( - name = CommunityRest.COLLECTIONS, - method = "getCollections" - ), - @LinkRest( - name = CommunityRest.LOGO, - method = "getLogo" - ), - @LinkRest( - name = CommunityRest.SUBCOMMUNITIES, - method = "getSubcommunities" - ), - @LinkRest( - name = CommunityRest.PARENT_COMMUNITY, - method = "getParentCommunity" - ), - @LinkRest( - name = CommunityRest.ADMIN_GROUP, - method = "getAdminGroup" - ) + @LinkRest( + name = CommunityRest.COLLECTIONS, + method = "getCollections" + ), + @LinkRest( + name = CommunityRest.LOGO, + method = "getLogo" + ), + @LinkRest( + name = CommunityRest.SUBCOMMUNITIES, + method = "getSubcommunities" + ), + @LinkRest( + name = CommunityRest.PARENT_COMMUNITY, + method = "getParentCommunity" + ), + @LinkRest( + name = CommunityRest.ADMIN_GROUP, + method = "getAdminGroup" + ) }) public class CommunityRest extends DSpaceObjectRest { public static final String NAME = "community"; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/CrisLayoutTabRest.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/CrisLayoutTabRest.java index 365ce03109bb..eeb7f073722e 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/CrisLayoutTabRest.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/CrisLayoutTabRest.java @@ -23,10 +23,10 @@ * */ @LinksRest(links = { - @LinkRest( - name = CrisLayoutTabRest.SECURITY_METADATA, - method = "getSecurityMetadata" - ) + @LinkRest( + name = CrisLayoutTabRest.SECURITY_METADATA, + method = "getSecurityMetadata" + ) }) public class CrisLayoutTabRest extends BaseObjectRest { diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/EPersonRest.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/EPersonRest.java index 67104333ff15..01f42534d83f 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/EPersonRest.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/EPersonRest.java @@ -20,10 +20,10 @@ * @author Andrea Bollini (andrea.bollini at 4science.it) */ @LinksRest(links = { - @LinkRest( - name = EPersonRest.GROUPS, - method = "getGroups" - ) + @LinkRest( + name = EPersonRest.GROUPS, + method = "getGroups" + ) }) public class EPersonRest extends DSpaceObjectRest { public static final String NAME = "eperson"; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/EntityTypeRest.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/EntityTypeRest.java index 9d4a729ded93..ac69bff903e3 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/EntityTypeRest.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/EntityTypeRest.java @@ -15,10 +15,10 @@ * Refer to {@link org.dspace.content.EntityType} for explanation of the properties */ @LinksRest(links = { - @LinkRest( - name = EntityTypeRest.RELATION_SHIP_TYPES, - method = "getEntityTypeRelationship" - ) + @LinkRest( + name = EntityTypeRest.RELATION_SHIP_TYPES, + method = "getEntityTypeRelationship" + ) }) public class EntityTypeRest extends BaseObjectRest { diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/ExternalSourceRest.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/ExternalSourceRest.java index 58402954e8db..c9901c8ae472 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/ExternalSourceRest.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/ExternalSourceRest.java @@ -13,10 +13,10 @@ * This class serves as a REST representation for an External Source */ @LinksRest(links = { - @LinkRest( - name = ExternalSourceRest.ENTITY_TYPES, - method = "getSupportedEntityTypes" - ) + @LinkRest( + name = ExternalSourceRest.ENTITY_TYPES, + method = "getSupportedEntityTypes" + ) }) public class ExternalSourceRest extends BaseObjectRest { diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/GroupRest.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/GroupRest.java index 7d56af2e7204..e64fb4c171a2 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/GroupRest.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/GroupRest.java @@ -18,18 +18,18 @@ */ @JsonIgnoreProperties(ignoreUnknown = true) @LinksRest(links = { - @LinkRest( - name = GroupRest.SUBGROUPS, - method = "getGroups" - ), - @LinkRest( - name = GroupRest.EPERSONS, - method = "getMembers" - ), - @LinkRest( - name = GroupRest.OBJECT, - method = "getParentObject" - ) + @LinkRest( + name = GroupRest.SUBGROUPS, + method = "getGroups" + ), + @LinkRest( + name = GroupRest.EPERSONS, + method = "getMembers" + ), + @LinkRest( + name = GroupRest.OBJECT, + method = "getParentObject" + ) }) public class GroupRest extends DSpaceObjectRest { public static final String NAME = "group"; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/ItemRest.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/ItemRest.java index 825b9d422f75..c9ee6fc03040 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/ItemRest.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/ItemRest.java @@ -17,46 +17,46 @@ * @author Andrea Bollini (andrea.bollini at 4science.it) */ @LinksRest(links = { - @LinkRest( - name = ItemRest.ACCESS_STATUS, - method = "getAccessStatus" - ), - @LinkRest( - name = ItemRest.BUNDLES, - method = "getBundles" - ), - @LinkRest( - name = ItemRest.IDENTIFIERS, - method = "getIdentifiers" - ), - @LinkRest( - name = ItemRest.MAPPED_COLLECTIONS, - method = "getMappedCollections" - ), - @LinkRest( - name = ItemRest.OWNING_COLLECTION, - method = "getOwningCollection" - ), - @LinkRest( - name = ItemRest.RELATIONSHIPS, - method = "getRelationships" - ), - @LinkRest( - name = ItemRest.VERSION, - method = "getItemVersion" - ), - @LinkRest( - name = ItemRest.TEMPLATE_ITEM_OF, - method = "getTemplateItemOf" - ), - @LinkRest( - name = ItemRest.METRICS, - method = "getMetrics" - ), - @LinkRest( - name = ItemRest.THUMBNAIL, - method = "getThumbnail" - ) + @LinkRest( + name = ItemRest.ACCESS_STATUS, + method = "getAccessStatus" + ), + @LinkRest( + name = ItemRest.BUNDLES, + method = "getBundles" + ), + @LinkRest( + name = ItemRest.IDENTIFIERS, + method = "getIdentifiers" + ), + @LinkRest( + name = ItemRest.MAPPED_COLLECTIONS, + method = "getMappedCollections" + ), + @LinkRest( + name = ItemRest.OWNING_COLLECTION, + method = "getOwningCollection" + ), + @LinkRest( + name = ItemRest.RELATIONSHIPS, + method = "getRelationships" + ), + @LinkRest( + name = ItemRest.VERSION, + method = "getItemVersion" + ), + @LinkRest( + name = ItemRest.TEMPLATE_ITEM_OF, + method = "getTemplateItemOf" + ), + @LinkRest( + name = ItemRest.METRICS, + method = "getMetrics" + ), + @LinkRest( + name = ItemRest.THUMBNAIL, + method = "getThumbnail" + ) }) public class ItemRest extends DSpaceObjectRest { public static final String NAME = "item"; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/OrcidHistoryRest.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/OrcidHistoryRest.java index 2c4c7cbe6043..433d5626ca42 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/OrcidHistoryRest.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/OrcidHistoryRest.java @@ -39,7 +39,7 @@ public class OrcidHistoryRest extends BaseObjectRest { private String responseMessage; - public OrcidHistoryRest(){} + public OrcidHistoryRest() {} @Override @JsonProperty(access = JsonProperty.Access.READ_ONLY) diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/ResearcherProfileRest.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/ResearcherProfileRest.java index 4a6f18b69baa..3808420cbf8d 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/ResearcherProfileRest.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/ResearcherProfileRest.java @@ -20,8 +20,8 @@ * */ @LinksRest(links = { - @LinkRest(name = ResearcherProfileRest.ITEM, method = "getItem"), - @LinkRest(name = ResearcherProfileRest.EPERSON, method = "getEPerson") + @LinkRest(name = ResearcherProfileRest.ITEM, method = "getItem"), + @LinkRest(name = ResearcherProfileRest.EPERSON, method = "getEPerson") }) public class ResearcherProfileRest extends BaseObjectRest { diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/SuggestionTargetRest.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/SuggestionTargetRest.java index 65764507e247..b6518eff7488 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/SuggestionTargetRest.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/SuggestionTargetRest.java @@ -19,7 +19,7 @@ * @author Andrea Bollini (andrea.bollini at 4science.it) */ @LinksRest(links = { - @LinkRest(name = SuggestionTargetRest.TARGET, method = "getTarget") + @LinkRest(name = SuggestionTargetRest.TARGET, method = "getTarget") }) public class SuggestionTargetRest extends BaseObjectRest { private static final long serialVersionUID = 1L; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/VersionHistoryRest.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/VersionHistoryRest.java index 5aab7028a8c6..88269253b2a4 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/VersionHistoryRest.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/VersionHistoryRest.java @@ -13,13 +13,13 @@ * The REST object for the {@link org.dspace.versioning.VersionHistory} object */ @LinksRest(links = { - @LinkRest( - name = VersionHistoryRest.VERSIONS, - method = "getVersions" + @LinkRest( + name = VersionHistoryRest.VERSIONS, + method = "getVersions" ), @LinkRest( - name = VersionHistoryRest.DRAFT_VERSION, - method = "getDraftVersion" + name = VersionHistoryRest.DRAFT_VERSION, + method = "getDraftVersion" ) }) public class VersionHistoryRest extends BaseObjectRest { diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/VocabularyEntryDetailsRest.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/VocabularyEntryDetailsRest.java index 0525e49bc855..b332f6fc6cd1 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/VocabularyEntryDetailsRest.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/VocabularyEntryDetailsRest.java @@ -20,9 +20,9 @@ * @author Andrea Bollini (andrea.bollini at 4science.it) */ @LinksRest(links = { - @LinkRest(name = VocabularyEntryDetailsRest.PARENT, method = "getParent"), - @LinkRest(name = VocabularyEntryDetailsRest.CHILDREN, method = "getChildren") - }) + @LinkRest(name = VocabularyEntryDetailsRest.PARENT, method = "getParent"), + @LinkRest(name = VocabularyEntryDetailsRest.CHILDREN, method = "getChildren") +}) public class VocabularyEntryDetailsRest extends BaseObjectRest { public static final String PLURAL_NAME = "vocabularyEntryDetails"; public static final String NAME = "vocabularyEntryDetail"; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/VocabularyRest.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/VocabularyRest.java index 0a7e6a9c8aa4..9a50c8eacaa4 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/VocabularyRest.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/VocabularyRest.java @@ -19,7 +19,7 @@ @LinksRest(links = { @LinkRest(name = VocabularyRest.ENTRIES, method = "filter" - ), + ) }) public class VocabularyRest extends BaseObjectRest { diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/WorkflowDefinitionRest.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/WorkflowDefinitionRest.java index 0ec967d09876..aea885219b75 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/WorkflowDefinitionRest.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/WorkflowDefinitionRest.java @@ -18,14 +18,14 @@ * @author Maria Verdonck (Atmire) on 11/12/2019 */ @LinksRest(links = { - @LinkRest( - name = WorkflowDefinitionRest.COLLECTIONS_MAPPED_TO, - method = "getCollections" - ), - @LinkRest( - name = WorkflowDefinitionRest.STEPS, - method = "getSteps" - ) + @LinkRest( + name = WorkflowDefinitionRest.COLLECTIONS_MAPPED_TO, + method = "getCollections" + ), + @LinkRest( + name = WorkflowDefinitionRest.STEPS, + method = "getSteps" + ) }) public class WorkflowDefinitionRest extends BaseObjectRest { diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/WorkflowItemRest.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/WorkflowItemRest.java index 65fa531c5e42..b98e65e751dd 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/WorkflowItemRest.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/WorkflowItemRest.java @@ -15,22 +15,22 @@ * @author Andrea Bollini (andrea.bollini at 4science.it) */ @LinksRest(links = { - @LinkRest( - name = WorkflowItemRest.STEP, - method = "getStep" - ), - @LinkRest( - name = WorkflowItemRest.SUBMITTER, - method = "getWorkflowItemSubmitter" - ), - @LinkRest( - name = WorkflowItemRest.ITEM, - method = "getWorkflowItemItem" - ), - @LinkRest( - name = WorkflowItemRest.COLLECTION, - method = "getWorkflowItemCollection" - ) + @LinkRest( + name = WorkflowItemRest.STEP, + method = "getStep" + ), + @LinkRest( + name = WorkflowItemRest.SUBMITTER, + method = "getWorkflowItemSubmitter" + ), + @LinkRest( + name = WorkflowItemRest.ITEM, + method = "getWorkflowItemItem" + ), + @LinkRest( + name = WorkflowItemRest.COLLECTION, + method = "getWorkflowItemCollection" + ) }) public class WorkflowItemRest extends AInprogressSubmissionRest { public static final String NAME = "workflowitem"; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/WorkflowStepRest.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/WorkflowStepRest.java index 740714fce5a4..600d142ee606 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/WorkflowStepRest.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/WorkflowStepRest.java @@ -21,7 +21,7 @@ @LinkRest( name = WorkflowStepRest.ACTIONS, method = "getActions" - ), + ) }) public class WorkflowStepRest extends BaseObjectRest { diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/WorkspaceItemRest.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/WorkspaceItemRest.java index e3e30db5b760..540040f580a5 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/WorkspaceItemRest.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/WorkspaceItemRest.java @@ -14,23 +14,24 @@ * * @author Andrea Bollini (andrea.bollini at 4science.it) */ +@SuppressWarnings("checkstyle:Indentation") @LinksRest(links = { - @LinkRest( - name = WorkspaceItemRest.SUPERVISION_ORDERS, - method = "getSupervisionOrders" - ), - @LinkRest( - name = WorkspaceItemRest.SUBMITTER, - method = "getWorkspaceItemSubmitter" - ), - @LinkRest( - name = WorkspaceItemRest.ITEM, - method = "getWorkspaceItemItem" - ), - @LinkRest( - name = WorkspaceItemRest.COLLECTION, - method = "getWorkspaceItemCollection" - ) + @LinkRest( + name = WorkspaceItemRest.SUPERVISION_ORDERS, + method = "getSupervisionOrders" + ), + @LinkRest( + name = WorkspaceItemRest.SUBMITTER, + method = "getWorkspaceItemSubmitter" + ), + @LinkRest( + name = WorkspaceItemRest.ITEM, + method = "getWorkspaceItemItem" + ), + @LinkRest( + name = WorkspaceItemRest.COLLECTION, + method = "getWorkspaceItemCollection" + ) }) public class WorkspaceItemRest extends AInprogressSubmissionRest { public static final String NAME = "workspaceitem"; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/utils/RegexUtils.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/utils/RegexUtils.java index 3874d80dd24a..7bfe017664ad 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/utils/RegexUtils.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/utils/RegexUtils.java @@ -13,7 +13,7 @@ */ public class RegexUtils { - private RegexUtils(){} + private RegexUtils() { } /** * Regular expression in the request mapping to accept UUID as identifier From e8ff769895483d49569d365f883efbb3ae8dc904 Mon Sep 17 00:00:00 2001 From: Vincenzo Mecca Date: Thu, 3 Oct 2024 13:01:36 +0200 Subject: [PATCH 28/35] [DSC-1848] Fixes CrisLayoutToolScriptIT & ExportCrisLayoutToolScriptIT failures --- dspace-api/src/main/java/org/dspace/layout/CrisLayoutField.java | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/dspace-api/src/main/java/org/dspace/layout/CrisLayoutField.java b/dspace-api/src/main/java/org/dspace/layout/CrisLayoutField.java index c7e6950685f3..7201addcf5d4 100644 --- a/dspace-api/src/main/java/org/dspace/layout/CrisLayoutField.java +++ b/dspace-api/src/main/java/org/dspace/layout/CrisLayoutField.java @@ -53,7 +53,7 @@ public class CrisLayoutField implements ReloadableEntity { private Integer id; @ManyToOne(fetch = FetchType.LAZY) - @JoinColumn(name = "metadata_field_id", nullable = false) + @JoinColumn(name = "metadata_field_id") private MetadataField metadataField; @Column(name = "rendering") From c4fe815271fabfbb48d4a1f7a5eb8e58a22ad57d Mon Sep 17 00:00:00 2001 From: Vincenzo Mecca Date: Thu, 3 Oct 2024 13:05:37 +0200 Subject: [PATCH 29/35] [DSC-1848] Fixes checkstyle warnings --- .../dspace/app/rest/model/BitstreamRest.java | 30 ++++--- .../app/rest/model/BrowseIndexRest.java | 22 ++--- .../org/dspace/app/rest/model/BundleRest.java | 6 +- .../app/rest/model/ClaimedTaskRest.java | 14 +-- .../dspace/app/rest/model/CollectionRest.java | 70 +++++++-------- .../dspace/app/rest/model/CommunityRest.java | 46 +++++----- .../app/rest/model/CrisLayoutTabRest.java | 14 +-- .../dspace/app/rest/model/EPersonRest.java | 14 +-- .../dspace/app/rest/model/EditItemRest.java | 22 ++--- .../dspace/app/rest/model/EntityTypeRest.java | 7 +- .../app/rest/model/ExternalSourceRest.java | 7 +- .../org/dspace/app/rest/model/GroupRest.java | 18 ++-- .../org/dspace/app/rest/model/ItemRest.java | 86 ++++++++++--------- .../dspace/app/rest/model/PoolTaskRest.java | 14 +-- .../dspace/app/rest/model/ProcessRest.java | 30 ++++--- .../app/rest/model/RelationshipRest.java | 7 +- .../app/rest/model/VersionHistoryRest.java | 6 +- .../dspace/app/rest/model/VersionRest.java | 22 ++--- .../dspace/app/rest/model/VocabularyRest.java | 6 +- .../rest/model/WorkflowDefinitionRest.java | 6 +- .../app/rest/model/WorkflowItemRest.java | 38 ++++---- .../app/rest/model/WorkflowStepRest.java | 7 +- 22 files changed, 251 insertions(+), 241 deletions(-) diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/BitstreamRest.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/BitstreamRest.java index 96dfd73679d6..4128b10c8da2 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/BitstreamRest.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/BitstreamRest.java @@ -15,20 +15,22 @@ * * @author Andrea Bollini (andrea.bollini at 4science.it) */ -@LinksRest(links = { - @LinkRest( - name = BitstreamRest.BUNDLE, - method = "getBundle" - ), - @LinkRest( - name = BitstreamRest.FORMAT, - method = "getFormat" - ), - @LinkRest( - name = BitstreamRest.THUMBNAIL, - method = "getThumbnail" - ) -}) +@LinksRest(links = + { + @LinkRest( + name = BitstreamRest.BUNDLE, + method = "getBundle" + ), + @LinkRest( + name = BitstreamRest.FORMAT, + method = "getFormat" + ), + @LinkRest( + name = BitstreamRest.THUMBNAIL, + method = "getThumbnail" + ) + } +) public class BitstreamRest extends DSpaceObjectRest { public static final String PLURAL_NAME = "bitstreams"; public static final String NAME = "bitstream"; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/BrowseIndexRest.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/BrowseIndexRest.java index a3c0b37ba576..7b36c715796a 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/BrowseIndexRest.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/BrowseIndexRest.java @@ -19,16 +19,18 @@ * * @author Andrea Bollini (andrea.bollini at 4science.it) */ -@LinksRest(links = { - @LinkRest( - name = BrowseIndexRest.LINK_ITEMS, - method = "listBrowseItems" - ), - @LinkRest( - name = BrowseIndexRest.LINK_ENTRIES, - method = "listBrowseEntries" - ) -}) +@LinksRest(links = + { + @LinkRest( + name = BrowseIndexRest.LINK_ITEMS, + method = "listBrowseItems" + ), + @LinkRest( + name = BrowseIndexRest.LINK_ENTRIES, + method = "listBrowseEntries" + ) + } +) public class BrowseIndexRest extends BaseObjectRest { private static final long serialVersionUID = -4870333170249999559L; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/BundleRest.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/BundleRest.java index 1ec9f448dde4..3b1374ec02a0 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/BundleRest.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/BundleRest.java @@ -15,7 +15,8 @@ * * @author Jelle Pelgrims (jelle.pelgrims at atmire.com) */ -@LinksRest(links = { +@LinksRest(links = + { @LinkRest( name = BundleRest.ITEM, method = "getItem" @@ -28,7 +29,8 @@ name = BundleRest.PRIMARY_BITSTREAM, method = "getPrimaryBitstream" ) -}) + } +) public class BundleRest extends DSpaceObjectRest { public static final String NAME = "bundle"; public static final String PLURAL_NAME = "bundles"; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/ClaimedTaskRest.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/ClaimedTaskRest.java index 0973fac987d2..2c6e0f51bcdf 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/ClaimedTaskRest.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/ClaimedTaskRest.java @@ -15,12 +15,14 @@ * * @author Andrea Bollini (andrea.bollini at 4science.it) */ -@LinksRest(links = { - @LinkRest( - name = ClaimedTaskRest.STEP, - method = "getStep" - ) -}) +@LinksRest(links = + { + @LinkRest( + name = ClaimedTaskRest.STEP, + method = "getStep" + ) + } +) public class ClaimedTaskRest extends BaseObjectRest { public static final String NAME = "claimedtask"; public static final String PLURAL_NAME = "claimedtasks"; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/CollectionRest.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/CollectionRest.java index 1d77ce135c48..82b3a99360dc 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/CollectionRest.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/CollectionRest.java @@ -14,40 +14,42 @@ * * @author Andrea Bollini (andrea.bollini at 4science.it) */ -@LinksRest(links = { - @LinkRest( - name = CollectionRest.LICENSE, - method = "getLicense" - ), - @LinkRest( - name = CollectionRest.LOGO, - method = "getLogo" - ), - @LinkRest( - name = CollectionRest.MAPPED_ITEMS, - method = "getMappedItems" - ), - @LinkRest( - name = CollectionRest.PARENT_COMMUNITY, - method = "getParentCommunity" - ), - @LinkRest( - name = CollectionRest.ADMIN_GROUP, - method = "getAdminGroup" - ), - @LinkRest( - name = CollectionRest.SUBMITTERS_GROUP, - method = "getSubmittersGroup" - ), - @LinkRest( - name = CollectionRest.ITEM_READ_GROUP, - method = "getItemReadGroup" - ), - @LinkRest( - name = CollectionRest.BITSTREAM_READ_GROUP, - method = "getBitstreamReadGroup" - ), -}) +@LinksRest(links = + { + @LinkRest( + name = CollectionRest.LICENSE, + method = "getLicense" + ), + @LinkRest( + name = CollectionRest.LOGO, + method = "getLogo" + ), + @LinkRest( + name = CollectionRest.MAPPED_ITEMS, + method = "getMappedItems" + ), + @LinkRest( + name = CollectionRest.PARENT_COMMUNITY, + method = "getParentCommunity" + ), + @LinkRest( + name = CollectionRest.ADMIN_GROUP, + method = "getAdminGroup" + ), + @LinkRest( + name = CollectionRest.SUBMITTERS_GROUP, + method = "getSubmittersGroup" + ), + @LinkRest( + name = CollectionRest.ITEM_READ_GROUP, + method = "getItemReadGroup" + ), + @LinkRest( + name = CollectionRest.BITSTREAM_READ_GROUP, + method = "getBitstreamReadGroup" + ), + } +) public class CollectionRest extends DSpaceObjectRest { public static final String NAME = "collection"; public static final String PLURAL_NAME = "collections"; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/CommunityRest.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/CommunityRest.java index f50432f021da..293efa66cdd6 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/CommunityRest.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/CommunityRest.java @@ -14,28 +14,30 @@ * * @author Andrea Bollini (andrea.bollini at 4science.it) */ -@LinksRest(links = { - @LinkRest( - name = CommunityRest.COLLECTIONS, - method = "getCollections" - ), - @LinkRest( - name = CommunityRest.LOGO, - method = "getLogo" - ), - @LinkRest( - name = CommunityRest.SUBCOMMUNITIES, - method = "getSubcommunities" - ), - @LinkRest( - name = CommunityRest.PARENT_COMMUNITY, - method = "getParentCommunity" - ), - @LinkRest( - name = CommunityRest.ADMIN_GROUP, - method = "getAdminGroup" - ) -}) +@LinksRest(links = + { + @LinkRest( + name = CommunityRest.COLLECTIONS, + method = "getCollections" + ), + @LinkRest( + name = CommunityRest.LOGO, + method = "getLogo" + ), + @LinkRest( + name = CommunityRest.SUBCOMMUNITIES, + method = "getSubcommunities" + ), + @LinkRest( + name = CommunityRest.PARENT_COMMUNITY, + method = "getParentCommunity" + ), + @LinkRest( + name = CommunityRest.ADMIN_GROUP, + method = "getAdminGroup" + ) + } +) public class CommunityRest extends DSpaceObjectRest { public static final String NAME = "community"; public static final String PLURAL_NAME = "communities"; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/CrisLayoutTabRest.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/CrisLayoutTabRest.java index eeb7f073722e..fe8112350114 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/CrisLayoutTabRest.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/CrisLayoutTabRest.java @@ -22,12 +22,14 @@ * @author Danilo Di Nuzzo (danilo.dinuzzo at 4science.it) * */ -@LinksRest(links = { - @LinkRest( - name = CrisLayoutTabRest.SECURITY_METADATA, - method = "getSecurityMetadata" - ) -}) +@LinksRest(links = + { + @LinkRest( + name = CrisLayoutTabRest.SECURITY_METADATA, + method = "getSecurityMetadata" + ) + } +) public class CrisLayoutTabRest extends BaseObjectRest { private static final long serialVersionUID = -6032412882381032490L; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/EPersonRest.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/EPersonRest.java index 01f42534d83f..37b8c724eb7f 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/EPersonRest.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/EPersonRest.java @@ -19,12 +19,14 @@ * * @author Andrea Bollini (andrea.bollini at 4science.it) */ -@LinksRest(links = { - @LinkRest( - name = EPersonRest.GROUPS, - method = "getGroups" - ) -}) +@LinksRest(links = + { + @LinkRest( + name = EPersonRest.GROUPS, + method = "getGroups" + ) + } +) public class EPersonRest extends DSpaceObjectRest { public static final String NAME = "eperson"; public static final String PLURAL_NAME = "epersons"; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/EditItemRest.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/EditItemRest.java index 13fe2705ac25..1f842c077cc3 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/EditItemRest.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/EditItemRest.java @@ -14,16 +14,18 @@ * * @author Danilo Di Nuzzo (danilo.dinuzzo at 4science.it) */ -@LinksRest(links = { - @LinkRest( - name = EditItemRest.MODE, - method = "getModes" - ), - @LinkRest( - name = EditItemRest.ITEM, - method = "getEditItemItem" - ) -}) +@LinksRest(links = + { + @LinkRest( + name = EditItemRest.MODE, + method = "getModes" + ), + @LinkRest( + name = EditItemRest.ITEM, + method = "getEditItemItem" + ) + } +) public class EditItemRest extends AInprogressSubmissionRest { private static final long serialVersionUID = 964876735342568998L; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/EntityTypeRest.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/EntityTypeRest.java index ac69bff903e3..67838caad50e 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/EntityTypeRest.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/EntityTypeRest.java @@ -14,12 +14,7 @@ * for the EntityTypeResource class. * Refer to {@link org.dspace.content.EntityType} for explanation of the properties */ -@LinksRest(links = { - @LinkRest( - name = EntityTypeRest.RELATION_SHIP_TYPES, - method = "getEntityTypeRelationship" - ) -}) +@LinksRest(links = {@LinkRest(name = EntityTypeRest.RELATION_SHIP_TYPES, method = "getEntityTypeRelationship")}) public class EntityTypeRest extends BaseObjectRest { private static final long serialVersionUID = 8166078961459192770L; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/ExternalSourceRest.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/ExternalSourceRest.java index c9901c8ae472..ad473e06bb8e 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/ExternalSourceRest.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/ExternalSourceRest.java @@ -12,12 +12,7 @@ /** * This class serves as a REST representation for an External Source */ -@LinksRest(links = { - @LinkRest( - name = ExternalSourceRest.ENTITY_TYPES, - method = "getSupportedEntityTypes" - ) -}) +@LinksRest(links = {@LinkRest(name = ExternalSourceRest.ENTITY_TYPES, method = "getSupportedEntityTypes")}) public class ExternalSourceRest extends BaseObjectRest { private static final long serialVersionUID = 6951711935287912124L; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/GroupRest.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/GroupRest.java index e64fb4c171a2..5d211cf25547 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/GroupRest.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/GroupRest.java @@ -17,20 +17,22 @@ * @author Andrea Bollini (andrea.bollini at 4science.it) */ @JsonIgnoreProperties(ignoreUnknown = true) -@LinksRest(links = { - @LinkRest( +@LinksRest(links = + { + @LinkRest( name = GroupRest.SUBGROUPS, method = "getGroups" - ), - @LinkRest( + ), + @LinkRest( name = GroupRest.EPERSONS, method = "getMembers" - ), - @LinkRest( + ), + @LinkRest( name = GroupRest.OBJECT, method = "getParentObject" - ) -}) + ) + } +) public class GroupRest extends DSpaceObjectRest { public static final String NAME = "group"; public static final String PLURAL_NAME = "groups"; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/ItemRest.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/ItemRest.java index c9ee6fc03040..23756bb30b25 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/ItemRest.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/ItemRest.java @@ -16,48 +16,50 @@ * * @author Andrea Bollini (andrea.bollini at 4science.it) */ -@LinksRest(links = { - @LinkRest( - name = ItemRest.ACCESS_STATUS, - method = "getAccessStatus" - ), - @LinkRest( - name = ItemRest.BUNDLES, - method = "getBundles" - ), - @LinkRest( - name = ItemRest.IDENTIFIERS, - method = "getIdentifiers" - ), - @LinkRest( - name = ItemRest.MAPPED_COLLECTIONS, - method = "getMappedCollections" - ), - @LinkRest( - name = ItemRest.OWNING_COLLECTION, - method = "getOwningCollection" - ), - @LinkRest( - name = ItemRest.RELATIONSHIPS, - method = "getRelationships" - ), - @LinkRest( - name = ItemRest.VERSION, - method = "getItemVersion" - ), - @LinkRest( - name = ItemRest.TEMPLATE_ITEM_OF, - method = "getTemplateItemOf" - ), - @LinkRest( - name = ItemRest.METRICS, - method = "getMetrics" - ), - @LinkRest( - name = ItemRest.THUMBNAIL, - method = "getThumbnail" - ) -}) +@LinksRest(links = + { + @LinkRest( + name = ItemRest.ACCESS_STATUS, + method = "getAccessStatus" + ), + @LinkRest( + name = ItemRest.BUNDLES, + method = "getBundles" + ), + @LinkRest( + name = ItemRest.IDENTIFIERS, + method = "getIdentifiers" + ), + @LinkRest( + name = ItemRest.MAPPED_COLLECTIONS, + method = "getMappedCollections" + ), + @LinkRest( + name = ItemRest.OWNING_COLLECTION, + method = "getOwningCollection" + ), + @LinkRest( + name = ItemRest.RELATIONSHIPS, + method = "getRelationships" + ), + @LinkRest( + name = ItemRest.VERSION, + method = "getItemVersion" + ), + @LinkRest( + name = ItemRest.TEMPLATE_ITEM_OF, + method = "getTemplateItemOf" + ), + @LinkRest( + name = ItemRest.METRICS, + method = "getMetrics" + ), + @LinkRest( + name = ItemRest.THUMBNAIL, + method = "getThumbnail" + ) + } +) public class ItemRest extends DSpaceObjectRest { public static final String NAME = "item"; public static final String PLURAL_NAME = "items"; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/PoolTaskRest.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/PoolTaskRest.java index 0b66f0604b2e..fe82c6e38b6f 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/PoolTaskRest.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/PoolTaskRest.java @@ -16,12 +16,14 @@ * * @author Andrea Bollini (andrea.bollini at 4science.it) */ -@LinksRest(links = { - @LinkRest( - name = PoolTaskRest.STEP, - method = "getStep" - ) -}) +@LinksRest(links = + { + @LinkRest( + name = PoolTaskRest.STEP, + method = "getStep" + ) + } +) public class PoolTaskRest extends BaseObjectRest { public static final String NAME = "pooltask"; public static final String PLURAL_NAME = "pooltasks"; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/ProcessRest.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/ProcessRest.java index d3d88c2776ce..2e4560193ac7 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/ProcessRest.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/ProcessRest.java @@ -20,20 +20,22 @@ /** * This class serves as a REST representation for the {@link Process} class */ -@LinksRest(links = { - @LinkRest( - name = ProcessRest.FILES, - method = "getFilesFromProcess" - ), - @LinkRest( - name = ProcessRest.FILE_TYPES, - method = "getFileTypesFromProcess" - ), - @LinkRest( - name = ProcessRest.OUTPUT, - method = "getOutputFromProcess" - ) -}) +@LinksRest(links = + { + @LinkRest( + name = ProcessRest.FILES, + method = "getFilesFromProcess" + ), + @LinkRest( + name = ProcessRest.FILE_TYPES, + method = "getFileTypesFromProcess" + ), + @LinkRest( + name = ProcessRest.OUTPUT, + method = "getOutputFromProcess" + ) + } +) public class ProcessRest extends BaseObjectRest { public static final String NAME = "process"; public static final String PLURAL_NAME = "processes"; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/RelationshipRest.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/RelationshipRest.java index 76a7a4348682..49bc67baf6f5 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/RelationshipRest.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/RelationshipRest.java @@ -18,12 +18,7 @@ * This class acts as a data holder for the RelationshipResource * Refer to {@link org.dspace.content.Relationship} for explanation about the properties */ -@LinksRest(links = { - @LinkRest( - name = RelationshipRest.RELATIONSHIP_TYPE, - method = "getRelationshipType" - ) -}) +@LinksRest(links = {@LinkRest(name = RelationshipRest.RELATIONSHIP_TYPE, method = "getRelationshipType")}) public class RelationshipRest extends BaseObjectRest { public static final String NAME = "relationship"; public static final String PLURAL_NAME = "relationships"; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/VersionHistoryRest.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/VersionHistoryRest.java index 88269253b2a4..c46758b8218f 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/VersionHistoryRest.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/VersionHistoryRest.java @@ -12,7 +12,8 @@ /** * The REST object for the {@link org.dspace.versioning.VersionHistory} object */ -@LinksRest(links = { +@LinksRest(links = + { @LinkRest( name = VersionHistoryRest.VERSIONS, method = "getVersions" @@ -21,7 +22,8 @@ name = VersionHistoryRest.DRAFT_VERSION, method = "getDraftVersion" ) -}) + } +) public class VersionHistoryRest extends BaseObjectRest { private static final long serialVersionUID = -6466315011690554740L; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/VersionRest.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/VersionRest.java index 21bf82804dd2..e0d510d1d3c8 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/VersionRest.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/VersionRest.java @@ -15,16 +15,18 @@ /** * The REST object for the {@link org.dspace.versioning.Version} objects */ -@LinksRest(links = { - @LinkRest( - name = VersionRest.VERSION_HISTORY, - method = "getVersionHistory" - ), - @LinkRest( - name = VersionRest.ITEM, - method = "getVersionItem" - ) -}) +@LinksRest(links = + { + @LinkRest( + name = VersionRest.VERSION_HISTORY, + method = "getVersionHistory" + ), + @LinkRest( + name = VersionRest.ITEM, + method = "getVersionItem" + ) + } +) public class VersionRest extends BaseObjectRest { public static final String NAME = "version"; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/VocabularyRest.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/VocabularyRest.java index 9a50c8eacaa4..dc122c01fc8f 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/VocabularyRest.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/VocabularyRest.java @@ -16,11 +16,7 @@ * * @author Andrea Bollini (andrea.bollini at 4science.it) */ -@LinksRest(links = { - @LinkRest(name = VocabularyRest.ENTRIES, - method = "filter" - ) -}) +@LinksRest(links = {@LinkRest(name = VocabularyRest.ENTRIES, method = "filter")}) public class VocabularyRest extends BaseObjectRest { public static final String NAME = "vocabulary"; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/WorkflowDefinitionRest.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/WorkflowDefinitionRest.java index aea885219b75..f5660a69043e 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/WorkflowDefinitionRest.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/WorkflowDefinitionRest.java @@ -17,7 +17,8 @@ * * @author Maria Verdonck (Atmire) on 11/12/2019 */ -@LinksRest(links = { +@LinksRest(links = + { @LinkRest( name = WorkflowDefinitionRest.COLLECTIONS_MAPPED_TO, method = "getCollections" @@ -26,7 +27,8 @@ name = WorkflowDefinitionRest.STEPS, method = "getSteps" ) -}) + } +) public class WorkflowDefinitionRest extends BaseObjectRest { public static final String CATEGORY = RestModel.CONFIGURATION; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/WorkflowItemRest.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/WorkflowItemRest.java index b98e65e751dd..5ee6323ebf80 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/WorkflowItemRest.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/WorkflowItemRest.java @@ -14,24 +14,26 @@ * * @author Andrea Bollini (andrea.bollini at 4science.it) */ -@LinksRest(links = { - @LinkRest( - name = WorkflowItemRest.STEP, - method = "getStep" - ), - @LinkRest( - name = WorkflowItemRest.SUBMITTER, - method = "getWorkflowItemSubmitter" - ), - @LinkRest( - name = WorkflowItemRest.ITEM, - method = "getWorkflowItemItem" - ), - @LinkRest( - name = WorkflowItemRest.COLLECTION, - method = "getWorkflowItemCollection" - ) -}) +@LinksRest(links = + { + @LinkRest( + name = WorkflowItemRest.STEP, + method = "getStep" + ), + @LinkRest( + name = WorkflowItemRest.SUBMITTER, + method = "getWorkflowItemSubmitter" + ), + @LinkRest( + name = WorkflowItemRest.ITEM, + method = "getWorkflowItemItem" + ), + @LinkRest( + name = WorkflowItemRest.COLLECTION, + method = "getWorkflowItemCollection" + ) + } +) public class WorkflowItemRest extends AInprogressSubmissionRest { public static final String NAME = "workflowitem"; public static final String PLURAL_NAME = "workflowitems"; diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/WorkflowStepRest.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/WorkflowStepRest.java index 600d142ee606..fe48e493f5d9 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/WorkflowStepRest.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/WorkflowStepRest.java @@ -17,12 +17,7 @@ * * @author Maria Verdonck (Atmire) on 10/01/2020 */ -@LinksRest(links = { - @LinkRest( - name = WorkflowStepRest.ACTIONS, - method = "getActions" - ) -}) +@LinksRest(links = {@LinkRest(name = WorkflowStepRest.ACTIONS, method = "getActions")}) public class WorkflowStepRest extends BaseObjectRest { public static final String CATEGORY = RestModel.CONFIGURATION; From 6315ca4d810c931832cd464023f7a0973940b013 Mon Sep 17 00:00:00 2001 From: Vincenzo Mecca Date: Thu, 3 Oct 2024 15:22:53 +0200 Subject: [PATCH 30/35] [DSC-1848] Fixes SolrLoggerServiceImplIT failure --- .../dspace/statistics/SolrLoggerServiceImplIT.java | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/dspace-api/src/test/java/org/dspace/statistics/SolrLoggerServiceImplIT.java b/dspace-api/src/test/java/org/dspace/statistics/SolrLoggerServiceImplIT.java index 82f8680aea27..aad93ee95de1 100644 --- a/dspace-api/src/test/java/org/dspace/statistics/SolrLoggerServiceImplIT.java +++ b/dspace-api/src/test/java/org/dspace/statistics/SolrLoggerServiceImplIT.java @@ -126,8 +126,7 @@ public void tearDownTest() { * @throws IOException passed through. */ @Test - public void testMarkRobots() - throws SolrServerException, IOException, Exception { + public void testMarkRobots() throws Exception { System.out.println("markRobots"); EmbeddedSolrClientFactory clientFactory = new EmbeddedSolrClientFactory(); @@ -224,8 +223,7 @@ public void testMarkRobots() * @throws IOException passed through. */ @Test - public void testDeleteRobots() - throws SolrServerException, IOException, Exception { + public void testDeleteRobots() throws Exception { System.out.println("deleteRobots"); EmbeddedSolrClientFactory clientFactory = new EmbeddedSolrClientFactory(); @@ -289,6 +287,9 @@ public void testDeleteRobots() // Scan the core for marked robot entries and delete them. instance.deleteRobots(); + // forces the commit of deleted documents + client.commit(true, true); + // Check that the correct documents (and only those) are gone. QueryResponse response = instance.query(Q_ALL, null, null, Integer.MAX_VALUE, -1, @@ -300,8 +301,7 @@ public void testDeleteRobots() Object isBotRaw = document.getFieldValue(F_IS_BOT); boolean isBot = (null == isBotRaw) ? false : (Boolean) isBotRaw; - assertEquals("Marked document was not removed --", - false, isBot); + assertEquals("Marked document was not removed --", false, isBot); } assertEquals("Wrong number of documents remaining --", 1, nDocs); } From bdae1853f7d4b1e13ae4b5ec1e5ed2c4df3ec8b6 Mon Sep 17 00:00:00 2001 From: Vincenzo Mecca Date: Tue, 8 Oct 2024 14:42:41 +0200 Subject: [PATCH 31/35] [DSC-1848] CSRF orcid webhook pattern fix --- dspace/config/dspace.cfg | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/dspace/config/dspace.cfg b/dspace/config/dspace.cfg index dcb0e908698c..20f27243e23b 100644 --- a/dspace/config/dspace.cfg +++ b/dspace/config/dspace.cfg @@ -1820,7 +1820,7 @@ crosswalk.fop.font-family = Noto Sans, Noto Naskh Arabic item-correction.enabled = true ### CSRF configuration #### -csrf.ignore-paths = /api/cris/orcid/{\\d+}/webhook/** +csrf.ignore-paths = /api/cris/orcid/{orcid:[0-9]+}/webhook/** ##Configuration of OpenAIREProjectAuthority openaire-project.authority.prefix = will be generated::OPENAIRE-PROJECT-ID:: From e360d2c933825936713a1cb4946fb23f9634b595 Mon Sep 17 00:00:00 2001 From: Vincenzo Mecca Date: Tue, 8 Oct 2024 14:43:05 +0200 Subject: [PATCH 32/35] [DSC-1848] Updates scripts version collision. --- ...e.sql => V7.6_2024.03.07.01__set_eperson_process_nullable.sql} | 0 ...ate.sql => V7.6_2024.03.07__create_table_items_for_update.sql} | 0 ...e.sql => V7.6_2024.03.07.01__set_eperson_process_nullable.sql} | 0 ...ate.sql => V7.6_2024.03.07__create_table_items_for_update.sql} | 0 4 files changed, 0 insertions(+), 0 deletions(-) rename dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/h2/{V7.6_2024.03.07__set_eperson_process_nullable.sql => V7.6_2024.03.07.01__set_eperson_process_nullable.sql} (100%) rename dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/h2/{V7.6_2024.07.03__create_table_items_for_update.sql => V7.6_2024.03.07__create_table_items_for_update.sql} (100%) rename dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/postgres/{V7.6_2024.03.07__set_eperson_process_nullable.sql => V7.6_2024.03.07.01__set_eperson_process_nullable.sql} (100%) rename dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/postgres/{V7.6_2024.07.03__create_table_items_for_update.sql => V7.6_2024.03.07__create_table_items_for_update.sql} (100%) diff --git a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/h2/V7.6_2024.03.07__set_eperson_process_nullable.sql b/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/h2/V7.6_2024.03.07.01__set_eperson_process_nullable.sql similarity index 100% rename from dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/h2/V7.6_2024.03.07__set_eperson_process_nullable.sql rename to dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/h2/V7.6_2024.03.07.01__set_eperson_process_nullable.sql diff --git a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/h2/V7.6_2024.07.03__create_table_items_for_update.sql b/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/h2/V7.6_2024.03.07__create_table_items_for_update.sql similarity index 100% rename from dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/h2/V7.6_2024.07.03__create_table_items_for_update.sql rename to dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/h2/V7.6_2024.03.07__create_table_items_for_update.sql diff --git a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/postgres/V7.6_2024.03.07__set_eperson_process_nullable.sql b/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/postgres/V7.6_2024.03.07.01__set_eperson_process_nullable.sql similarity index 100% rename from dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/postgres/V7.6_2024.03.07__set_eperson_process_nullable.sql rename to dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/postgres/V7.6_2024.03.07.01__set_eperson_process_nullable.sql diff --git a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/postgres/V7.6_2024.07.03__create_table_items_for_update.sql b/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/postgres/V7.6_2024.03.07__create_table_items_for_update.sql similarity index 100% rename from dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/postgres/V7.6_2024.07.03__create_table_items_for_update.sql rename to dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/postgres/V7.6_2024.03.07__create_table_items_for_update.sql From 1dc1d2ef29c99d32b396bec5ca1c55dee250a1a0 Mon Sep 17 00:00:00 2001 From: Vincenzo Mecca Date: Tue, 8 Oct 2024 19:10:38 +0200 Subject: [PATCH 33/35] [DSC-1848][DSC-1827] Adds linked collection to EditItem --- .../dspace/app/rest/model/EditItemRest.java | 5 + .../AbstractEditItemLinkRestRepository.java | 99 +++++++++++++++++++ .../EditItemCollectionLinkRestRepository.java | 50 ++++++++++ .../EditItemItemLinkRestRepository.java | 60 ++--------- 4 files changed, 164 insertions(+), 50 deletions(-) create mode 100644 dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/AbstractEditItemLinkRestRepository.java create mode 100644 dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/EditItemCollectionLinkRestRepository.java diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/EditItemRest.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/EditItemRest.java index 1f842c077cc3..9226f00bf480 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/EditItemRest.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/model/EditItemRest.java @@ -23,6 +23,10 @@ @LinkRest( name = EditItemRest.ITEM, method = "getEditItemItem" + ), + @LinkRest( + name = EditItemRest.COLLECTION, + method = "getEditItemCollection" ) } ) @@ -35,6 +39,7 @@ public class EditItemRest extends AInprogressSubmissionRest { public static final String CATEGORY = RestAddressableModel.CORE; public static final String ITEM = "item"; + public static final String COLLECTION = "collection"; @Override public String getCategory() { diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/AbstractEditItemLinkRestRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/AbstractEditItemLinkRestRepository.java new file mode 100644 index 000000000000..6a8e23033bce --- /dev/null +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/AbstractEditItemLinkRestRepository.java @@ -0,0 +1,99 @@ +/** + * The contents of this file are subject to the license and copyright + * detailed in the LICENSE and NOTICE files at the root of the source + * tree and available online at + * + * http://www.dspace.org/license/ + */ +package org.dspace.app.rest.repository; + +import java.sql.SQLException; +import java.util.Optional; +import java.util.UUID; +import java.util.function.Function; + +import org.dspace.app.rest.projection.Projection; +import org.dspace.authorize.AuthorizeException; +import org.dspace.content.Item; +import org.dspace.content.edit.EditItem; +import org.dspace.content.edit.service.EditItemService; +import org.dspace.content.service.ItemService; +import org.dspace.core.Context; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.data.rest.webmvc.ResourceNotFoundException; +import org.springframework.security.access.AccessDeniedException; + +/** + * Class that contains the basic implementation to retrieve linked {@link EditItem} resources. + * + * @author Vincenzo Mecca (vins01-4science - vincenzo.mecca at 4science.com) + **/ +public class AbstractEditItemLinkRestRepository extends AbstractDSpaceRestRepository { + + private static final Logger log = LoggerFactory.getLogger(AbstractEditItemLinkRestRepository.class); + + @Autowired + private EditItemService editItemService; + @Autowired + private ItemService itemService; + + protected static Optional getEditItemRestRequest(String data) { + if (data == null || data.isEmpty()) { + return Optional.empty(); + } + + String[] split = data.split(":"); + + UUID uuid; + try { + uuid = UUID.fromString(split[0]); + } catch (Exception e) { + log.error("Cannot convert the following uuid: {}", split[0], e); + return Optional.empty(); + } + String mode = split[1]; + return Optional.of(new EditItemRestRequest(uuid, mode)); + } + + protected EditItem findEditItem(EditItemRestRequest requestDetails) { + try { + Context context = obtainContext(); + Item item = itemService.find(context, requestDetails.uuid); + EditItem editItem = editItemService.find(context, item, requestDetails.mode); + + if (editItem == null) { + throw new ResourceNotFoundException("No such edit item found: " + requestDetails.uuid); + } + return editItem; + } catch (SQLException e) { + throw new RuntimeException(e); + } catch (AuthorizeException e) { + throw new AccessDeniedException( + "The current user does not have rights to edit mode <" + requestDetails.mode + ">" + ); + } + } + + protected R getMappedResource( + Optional request, + Function mapper, + Projection projection + ) { + return request.map(this::findEditItem) + .map(mapper) + .map(obj -> converter.toRest(obj, projection)) + .orElse(null); + } + + protected static class EditItemRestRequest { + public final UUID uuid; + public final String mode; + + public EditItemRestRequest(UUID uuid, String mode) { + this.uuid = uuid; + this.mode = mode; + } + } +} diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/EditItemCollectionLinkRestRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/EditItemCollectionLinkRestRepository.java new file mode 100644 index 000000000000..d1a020ccdfe6 --- /dev/null +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/EditItemCollectionLinkRestRepository.java @@ -0,0 +1,50 @@ +/** + * The contents of this file are subject to the license and copyright + * detailed in the LICENSE and NOTICE files at the root of the source + * tree and available online at + * + * http://www.dspace.org/license/ + */ +package org.dspace.app.rest.repository; + +import javax.annotation.Nullable; + +import jakarta.servlet.http.HttpServletRequest; +import org.dspace.app.rest.model.CollectionRest; +import org.dspace.app.rest.model.EditItemRest; +import org.dspace.app.rest.projection.Projection; +import org.dspace.content.edit.EditItem; +import org.springframework.data.domain.Pageable; +import org.springframework.stereotype.Component; + +/** + * Link resource for {@link EditItemRest#COLLECTION} + * + * @author Vincenzo Mecca (vins01-4science - vincenzo.mecca at 4science.com) + **/ +@Component(EditItemRest.CATEGORY + "." + EditItemRest.NAME + "." + EditItemRest.COLLECTION) +public class EditItemCollectionLinkRestRepository extends AbstractEditItemLinkRestRepository + implements LinkRestRepository { + + /** + * Retrieve the collection for an edit item. + * + * @param request - The current request + * @param data - The data template that contains both item uuid and mode {uuid:mode}, joined by a column + * @param optionalPageable - optional pageable object + * @param projection - the current projection + * @return the item for the edit item + */ + public CollectionRest getEditItemCollection( + @Nullable HttpServletRequest request, String data, + @Nullable Pageable optionalPageable, Projection projection + ) { + return getMappedResource( + getEditItemRestRequest(data), + EditItem::getCollection, + projection + ); + + } + +} diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/EditItemItemLinkRestRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/EditItemItemLinkRestRepository.java index d4f71a833117..b7fa1c3e41cc 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/EditItemItemLinkRestRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/EditItemItemLinkRestRepository.java @@ -7,40 +7,23 @@ */ package org.dspace.app.rest.repository; -import java.sql.SQLException; -import java.util.UUID; import javax.annotation.Nullable; import jakarta.servlet.http.HttpServletRequest; import org.dspace.app.rest.model.EditItemRest; import org.dspace.app.rest.model.ItemRest; import org.dspace.app.rest.projection.Projection; -import org.dspace.authorize.AuthorizeException; -import org.dspace.content.Item; import org.dspace.content.edit.EditItem; -import org.dspace.content.edit.service.EditItemService; -import org.dspace.content.service.ItemService; -import org.dspace.core.Context; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; -import org.springframework.beans.factory.annotation.Autowired; import org.springframework.data.domain.Pageable; -import org.springframework.data.rest.webmvc.ResourceNotFoundException; -import org.springframework.security.access.AccessDeniedException; import org.springframework.stereotype.Component; /** + * Link resource for {@link EditItemRest#ITEM} + * * @author Vincenzo Mecca (vins01-4science - vincenzo.mecca at 4science.com) **/ -@Component(EditItemRest.CATEGORY + "." + EditItemRest.NAME_PLURAL + "." + EditItemRest.ITEM) -public class EditItemItemLinkRestRepository extends AbstractDSpaceRestRepository implements LinkRestRepository { - - private static final Logger log = LoggerFactory.getLogger(EditItemItemLinkRestRepository.class); - - @Autowired - private EditItemService editItemService; - @Autowired - private ItemService itemService; +@Component(EditItemRest.CATEGORY + "." + EditItemRest.NAME + "." + EditItemRest.ITEM) +public class EditItemItemLinkRestRepository extends AbstractEditItemLinkRestRepository implements LinkRestRepository { /** * Retrieve the item for an edit item. @@ -55,35 +38,12 @@ public ItemRest getEditItemItem( @Nullable HttpServletRequest request, String data, @Nullable Pageable optionalPageable, Projection projection ) { - if (data == null || data.isEmpty()) { - return null; - } - String[] split = data.split(":"); - - UUID uuid; - try { - uuid = UUID.fromString(split[0]); - } catch (Exception e) { - log.error("Cannot convert the following uuid: {}", split[0], e); - return null; - } - String mode = split[1]; - - try { - Context context = obtainContext(); - Item item = itemService.find(context, uuid); - EditItem editItem = editItemService.find(context, item, mode); - - if (editItem == null || editItem.getItem() == null) { - throw new ResourceNotFoundException("No such edit item found: " + uuid); - } - - return converter.toRest(editItem.getItem(), projection); - } catch (SQLException e) { - throw new RuntimeException(e); - } catch (AuthorizeException e) { - throw new AccessDeniedException("The current user does not have rights to edit mode <" + mode + ">"); - } + return getMappedResource( + getEditItemRestRequest(data), + EditItem::getItem, + projection + ); } + } From 0ec62182149e86146450d35ca03072ae4bb6584e Mon Sep 17 00:00:00 2001 From: Vincenzo Mecca Date: Mon, 14 Oct 2024 16:17:28 +0200 Subject: [PATCH 34/35] [DSC-1848] Fixes V7.6_2024.04.23 Flyway script --- ....23__alter_table_process_add_foreign_key_on_user_id.sql | 7 +++++++ ....23__alter_table_process_add_foreign_key_on_user_id.sql | 7 +++++++ 2 files changed, 14 insertions(+) diff --git a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/h2/V7.6_2024.04.23__alter_table_process_add_foreign_key_on_user_id.sql b/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/h2/V7.6_2024.04.23__alter_table_process_add_foreign_key_on_user_id.sql index 85ae350f4594..35d8096b440d 100644 --- a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/h2/V7.6_2024.04.23__alter_table_process_add_foreign_key_on_user_id.sql +++ b/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/h2/V7.6_2024.04.23__alter_table_process_add_foreign_key_on_user_id.sql @@ -13,5 +13,12 @@ -- Drop the NOT NULL constraint on user_id column ALTER TABLE process ALTER COLUMN user_id DROP NOT NULL; +-- Sets null the invalid user_id inside the process table +UPDATE process +set user_id = null +where not exists( + select 1 from eperson where eperson.uuid = user_id +); + -- Add the foreign key constraint with ON DELETE SET NULL ALTER TABLE process ADD CONSTRAINT user_id FOREIGN KEY (user_id) REFERENCES eperson (uuid) ON DELETE SET NULL; \ No newline at end of file diff --git a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/postgres/V7.6_2024.04.23__alter_table_process_add_foreign_key_on_user_id.sql b/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/postgres/V7.6_2024.04.23__alter_table_process_add_foreign_key_on_user_id.sql index 85ae350f4594..35d8096b440d 100644 --- a/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/postgres/V7.6_2024.04.23__alter_table_process_add_foreign_key_on_user_id.sql +++ b/dspace-api/src/main/resources/org/dspace/storage/rdbms/sqlmigration/postgres/V7.6_2024.04.23__alter_table_process_add_foreign_key_on_user_id.sql @@ -13,5 +13,12 @@ -- Drop the NOT NULL constraint on user_id column ALTER TABLE process ALTER COLUMN user_id DROP NOT NULL; +-- Sets null the invalid user_id inside the process table +UPDATE process +set user_id = null +where not exists( + select 1 from eperson where eperson.uuid = user_id +); + -- Add the foreign key constraint with ON DELETE SET NULL ALTER TABLE process ADD CONSTRAINT user_id FOREIGN KEY (user_id) REFERENCES eperson (uuid) ON DELETE SET NULL; \ No newline at end of file From a3a2e9ee3eec9cbd6e075a4be57f1b42a8a15c69 Mon Sep 17 00:00:00 2001 From: Vincenzo Mecca Date: Mon, 14 Oct 2024 16:18:53 +0200 Subject: [PATCH 35/35] [DSC-1848] Fixes EditItemLinkRestRepository component definition name --- .../rest/repository/EditItemCollectionLinkRestRepository.java | 2 +- .../app/rest/repository/EditItemItemLinkRestRepository.java | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/EditItemCollectionLinkRestRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/EditItemCollectionLinkRestRepository.java index d1a020ccdfe6..26938e949b9e 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/EditItemCollectionLinkRestRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/EditItemCollectionLinkRestRepository.java @@ -22,7 +22,7 @@ * * @author Vincenzo Mecca (vins01-4science - vincenzo.mecca at 4science.com) **/ -@Component(EditItemRest.CATEGORY + "." + EditItemRest.NAME + "." + EditItemRest.COLLECTION) +@Component(EditItemRest.CATEGORY + "." + EditItemRest.NAME_PLURAL + "." + EditItemRest.COLLECTION) public class EditItemCollectionLinkRestRepository extends AbstractEditItemLinkRestRepository implements LinkRestRepository { diff --git a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/EditItemItemLinkRestRepository.java b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/EditItemItemLinkRestRepository.java index b7fa1c3e41cc..25f835ad5555 100644 --- a/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/EditItemItemLinkRestRepository.java +++ b/dspace-server-webapp/src/main/java/org/dspace/app/rest/repository/EditItemItemLinkRestRepository.java @@ -22,7 +22,7 @@ * * @author Vincenzo Mecca (vins01-4science - vincenzo.mecca at 4science.com) **/ -@Component(EditItemRest.CATEGORY + "." + EditItemRest.NAME + "." + EditItemRest.ITEM) +@Component(EditItemRest.CATEGORY + "." + EditItemRest.NAME_PLURAL + "." + EditItemRest.ITEM) public class EditItemItemLinkRestRepository extends AbstractEditItemLinkRestRepository implements LinkRestRepository { /**