From 57685a8af2a5c1c23d08a8129db2149d51a23948 Mon Sep 17 00:00:00 2001 From: Jonathan Feist Date: Thu, 13 Jan 2022 16:09:26 +0000 Subject: [PATCH 1/5] docs: correct path to country stats dir in README --- README.md | 2 +- .../coldcorals_country_output_2022-01-01.csv | 134 ++++++++++++++ .../coralreefs_country_output_2022-01-01.csv | 113 ++++++++++++ .../mangroves_country_output_2022-01-01.csv | 112 ++++++++++++ .../saltmarshes_country_output_2022-01-01.csv | 107 ++++++++++++ .../seagrasses_country_output_2022-01-01.csv | 165 ++++++++++++++++++ 6 files changed, 632 insertions(+), 1 deletion(-) create mode 100644 lib/data/habitat_coverage_protection/country/coldcorals_country_output_2022-01-01.csv create mode 100644 lib/data/habitat_coverage_protection/country/coralreefs_country_output_2022-01-01.csv create mode 100644 lib/data/habitat_coverage_protection/country/mangroves_country_output_2022-01-01.csv create mode 100644 lib/data/habitat_coverage_protection/country/saltmarshes_country_output_2022-01-01.csv create mode 100644 lib/data/habitat_coverage_protection/country/seagrasses_country_output_2022-01-01.csv diff --git a/README.md b/README.md index 00f9bbd3..84569593 100644 --- a/README.md +++ b/README.md @@ -55,7 +55,7 @@ The current procedure for updating statistics is as follows: * Ensure the country statistics CSVs conform to the format: `_country_output_--01.csv`. I.e. ensure that the match the current format within `lib/data/countries/habitat_coverage_protection/country/*.csv`. * In each CSV, check that the columns are correct and that the data format appears to be the same according to previous months. -Most commonly, you will need to rename `"iso_ter"` to `"iso3"` as the ISO column in each CSV. +Most commonly, you will need to rename `"iso3"` to `"iso3"` as the ISO column in each CSV. As of writing, the global statistics needs to be copied in from each CSV provided into the corresponding habitat within `config/habitats.yml`. Previously, this data would have been calculated automatically based on the country statistics. But due to inaccuracies diff --git a/lib/data/habitat_coverage_protection/country/coldcorals_country_output_2022-01-01.csv b/lib/data/habitat_coverage_protection/country/coldcorals_country_output_2022-01-01.csv new file mode 100644 index 00000000..00985894 --- /dev/null +++ b/lib/data/habitat_coverage_protection/country/coldcorals_country_output_2022-01-01.csv @@ -0,0 +1,134 @@ +"iso_ter","total_area","protected_area","percent_protected" +"ABNJ",1874.98221419641,421.629372626203,22.4871131807994 +"ABW",3.54881962864481,0,0 +"AGO",3.39567053773998,0,0 +"AIA",3.38364589335382,0,0 +"ALB",5.98647948252716,0,0 +"ARG",61.8263440651753,6.98422602063557,11.2965211290401 +"ASM",0.998440794849897,0,0 +"ATA",18.8890674198804,5.41915114173775,28.6893525301 +"ATF",14.3193147158519,14.3193147158519,100 +"ATG",0.997746538545076,0,0 +"AUS",333.428727950404,122.414638995168,36.7138847776118 +"BEN",0.997746527205306,0,0 +"BES",9.6108429947203,9.6108429947203,100 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a/lib/data/habitat_coverage_protection/country/coralreefs_country_output_2022-01-01.csv b/lib/data/habitat_coverage_protection/country/coralreefs_country_output_2022-01-01.csv new file mode 100644 index 00000000..75cb6c2e --- /dev/null +++ b/lib/data/habitat_coverage_protection/country/coralreefs_country_output_2022-01-01.csv @@ -0,0 +1,113 @@ +"iso_ter","total_area","protected_area","percent_protected" +"ABW",66.5257434761535,0.494249113192906,0.742944140669502 +"AIA",24.3337905218337,11.061888498537,45.4589616385972 +"ARE",126.761555170089,59.9976094380869,47.3310771215939 +"ASM",45.1590904217466,12.8077880948817,28.3614837572416 +"ATF",137.509204423328,43.6709723592565,31.7585812109082 +"ATG",54.8946288086163,34.0320862195155,61.9952934524148 +"AUS",31683.868469488,27425.2835412938,86.5591383441851 +"BES",200.532585281889,197.646076492077,98.5605786781464 +"BGD",4.53097443625609,0,0 +"BHR",207.846294391492,0.0000125028931051369,0.00000601545153438572 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+"YEM",5455.48189980982,0.00000620521784342261,0.000000113742799579977 +"ZAF",405.565779341976,405.565731809458,99.9999882799485 From 79cec5c83d4beda27173daaaa8666eec29d9b273 Mon Sep 17 00:00:00 2001 From: Jonathan Feist Date: Thu, 13 Jan 2022 16:09:52 +0000 Subject: [PATCH 2/5] chore: add 2022-01 country stats --- .../country/coldcorals_country_output_2022-01-01.csv | 2 +- .../country/coralreefs_country_output_2022-01-01.csv | 2 +- .../country/mangroves_country_output_2022-01-01.csv | 2 +- .../country/saltmarshes_country_output_2022-01-01.csv | 2 +- .../country/seagrasses_country_output_2022-01-01.csv | 2 +- 5 files changed, 5 insertions(+), 5 deletions(-) diff --git a/lib/data/habitat_coverage_protection/country/coldcorals_country_output_2022-01-01.csv b/lib/data/habitat_coverage_protection/country/coldcorals_country_output_2022-01-01.csv index 00985894..a18081b0 100644 --- a/lib/data/habitat_coverage_protection/country/coldcorals_country_output_2022-01-01.csv +++ b/lib/data/habitat_coverage_protection/country/coldcorals_country_output_2022-01-01.csv @@ -1,4 +1,4 @@ -"iso_ter","total_area","protected_area","percent_protected" +"iso3","total_area","protected_area","percent_protected" "ABNJ",1874.98221419641,421.629372626203,22.4871131807994 "ABW",3.54881962864481,0,0 "AGO",3.39567053773998,0,0 diff --git a/lib/data/habitat_coverage_protection/country/coralreefs_country_output_2022-01-01.csv b/lib/data/habitat_coverage_protection/country/coralreefs_country_output_2022-01-01.csv index 75cb6c2e..e94ddbd0 100644 --- a/lib/data/habitat_coverage_protection/country/coralreefs_country_output_2022-01-01.csv +++ b/lib/data/habitat_coverage_protection/country/coralreefs_country_output_2022-01-01.csv @@ -1,4 +1,4 @@ -"iso_ter","total_area","protected_area","percent_protected" +"iso3","total_area","protected_area","percent_protected" "ABW",66.5257434761535,0.494249113192906,0.742944140669502 "AIA",24.3337905218337,11.061888498537,45.4589616385972 "ARE",126.761555170089,59.9976094380869,47.3310771215939 diff --git a/lib/data/habitat_coverage_protection/country/mangroves_country_output_2022-01-01.csv b/lib/data/habitat_coverage_protection/country/mangroves_country_output_2022-01-01.csv index 698feff7..0ee1689a 100644 --- a/lib/data/habitat_coverage_protection/country/mangroves_country_output_2022-01-01.csv +++ b/lib/data/habitat_coverage_protection/country/mangroves_country_output_2022-01-01.csv @@ -1,4 +1,4 @@ -"iso_ter","total_area_2016","protected_area","percent_protected" +"iso3","total_area_2016","protected_area","percent_protected" "ABW",0.337893769827033,0.00685633593436759,2.02913949490023 "AGO",374.912657045239,1.68759753968406,0.450130852605604 "AIA",0.00867365899617037,0,0 diff --git a/lib/data/habitat_coverage_protection/country/saltmarshes_country_output_2022-01-01.csv b/lib/data/habitat_coverage_protection/country/saltmarshes_country_output_2022-01-01.csv index b5dca2f6..48e47670 100644 --- a/lib/data/habitat_coverage_protection/country/saltmarshes_country_output_2022-01-01.csv +++ b/lib/data/habitat_coverage_protection/country/saltmarshes_country_output_2022-01-01.csv @@ -1,4 +1,4 @@ -"iso_ter","total_area","protected_area","percent_protected" +"iso3","total_area","protected_area","percent_protected" "AGO",4.1149203726672,0.997746601119674,24.2470451614829 "ALA",0.758065181942218,0.0223843042827022,2.95282052466148 "ALB",54.5599588089528,46.2691076755062,84.8041470073724 diff --git a/lib/data/habitat_coverage_protection/country/seagrasses_country_output_2022-01-01.csv b/lib/data/habitat_coverage_protection/country/seagrasses_country_output_2022-01-01.csv index 0da4e3f4..4a287a77 100644 --- a/lib/data/habitat_coverage_protection/country/seagrasses_country_output_2022-01-01.csv +++ b/lib/data/habitat_coverage_protection/country/seagrasses_country_output_2022-01-01.csv @@ -1,4 +1,4 @@ -"iso_ter","total_area","protected_area","percent_protected" +"iso3","total_area","protected_area","percent_protected" "ABNJ",6335.72743951258,0,0 "ABW",33.086922981754,0,0 "AGO",592.857057860186,0,0 From 949fc60257a906073c135fde6cbf2e46052af821 Mon Sep 17 00:00:00 2001 From: Jonathan Feist Date: Thu, 13 Jan 2022 16:12:54 +0000 Subject: [PATCH 3/5] chore: update global habitats stats for 2022-01 --- config/habitats.yml | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/config/habitats.yml b/config/habitats.yml index d5a28bf2..afa1c34d 100644 --- a/config/habitats.yml +++ b/config/habitats.yml @@ -7,7 +7,7 @@ habitats: point_table: 'wcmc008_coralreef2010_pt_v4' wms_url: 'https://gis.unep-wcmc.org/arcgis/rest/services/marine/WCMC_008_CoralReefs_WMS/MapServer/export?transparent=true&format=png32&bbox={bbox-epsg-3857}&bboxSR=EPSG:3857&imageSR=EPSG:3857&size=256,256&f=image' total_area: 149886.974126351 - protected_area: 67459.5970014648 + protected_area: 67459.5970010873 saltmarshes: name: 'saltmarshes' title: 'Saltmarshes' @@ -16,7 +16,7 @@ habitats: point_table: 'wcmc027_saltmarshes_pt_v6' wms_url: 'https://gis.unep-wcmc.org/arcgis/rest/services/marine/WCMC_027_Saltmarsh_WMS/MapServer/export?transparent=true&format=png32&bbox={bbox-epsg-3857}&bboxSR=EPSG:3857&imageSR=EPSG:3857&size=256,256&f=image' total_area: 224435.075089817 - protected_area: 111631.244524728 + protected_area: 111626.044395594 mangroves: name: 'mangroves' title: 'Mangroves' @@ -24,8 +24,8 @@ habitats: poly_table: 'wcmc011_atlasmangrove2010_py_v3' point_table: wms_url: 'https://gis.unep-wcmc.org/arcgis/rest/services/marine/WCMC_011_WorldAtlasMangroves_WMS/MapServer/export?transparent=true&format=png32&bbox={bbox-epsg-3857}&bboxSR=EPSG:3857&imageSR=EPSG:3857&size=256,256&f=image' - total_area: 135869.552269989 - protected_area: 58078.5089440112 + total_area: 135869.552269998 + protected_area: 58078.5089440701 seagrasses: name: 'seagrasses' title: 'Seagrasses' @@ -34,7 +34,7 @@ habitats: point_table: 'wcmc_013_014_seagrassespt_v6' wms_url: 'https://gis.unep-wcmc.org/arcgis/rest/services/marine/WCMC_013_014_Seagrass_WMS/MapServer/export?transparent=true&format=png32&bbox={bbox-epsg-3857}&bboxSR=EPSG:3857&imageSR=EPSG:3857&size=256,256&f=image' total_area: 314001.940552758 - protected_area: 83570.1300703617 + protected_area: 83662.3936917851 coldcorals: name: 'coldcorals' title: 'Cold-water corals' @@ -43,5 +43,5 @@ habitats: point_table: 'wcmc001_coldcorals2017_pt_v5' wms_url: 'https://gis.unep-wcmc.org/arcgis/rest/services/marine/WCMC_001_ColdCorals2017_WMS/MapServer/export?transparent=true&format=png32&bbox={bbox-epsg-3857}&bboxSR=EPSG:3857&imageSR=EPSG:3857&size=256,256&f=image' total_area: 15336.9752787556 - protected_area: 4510.54276851295 + protected_area: 4513.803239803 From cf913af7f032f151463e7b2eb7d550c338683d6e Mon Sep 17 00:00:00 2001 From: Jonathan Feist Date: Thu, 13 Jan 2022 16:17:46 +0000 Subject: [PATCH 4/5] fix: undo s*replace on "iso_ter" in docs --- README.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index 84569593..e8bf4a1b 100644 --- a/README.md +++ b/README.md @@ -55,7 +55,7 @@ The current procedure for updating statistics is as follows: * Ensure the country statistics CSVs conform to the format: `_country_output_--01.csv`. I.e. ensure that the match the current format within `lib/data/countries/habitat_coverage_protection/country/*.csv`. * In each CSV, check that the columns are correct and that the data format appears to be the same according to previous months. -Most commonly, you will need to rename `"iso3"` to `"iso3"` as the ISO column in each CSV. +Most commonly, you will need to rename `"iso_ter"` to `"iso3"` as the ISO column in each CSV. As of writing, the global statistics needs to be copied in from each CSV provided into the corresponding habitat within `config/habitats.yml`. Previously, this data would have been calculated automatically based on the country statistics. But due to inaccuracies @@ -87,4 +87,4 @@ fails for some reason. The deployment TASK hook has this functionality. To update the timestmap, just run `bundle exec rake import:update_redlist_timestamp` on the server. You can also run `bundle exec cap production deploy TASK=import:update_redlist_timestamp` -to do this from your own machine, but it will include a new deploy. \ No newline at end of file +to do this from your own machine, but it will include a new deploy. From a88617d00bf17b500700d61162098cbe50f7f0c5 Mon Sep 17 00:00:00 2001 From: Jonathan Feist Date: Thu, 13 Jan 2022 16:23:16 +0000 Subject: [PATCH 5/5] chore: update for release-1.4.2 --- CHANGELOG.md | 5 +++++ README.md | 5 +++++ 2 files changed, 10 insertions(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index 4bb87bd3..84ca5301 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -1,3 +1,8 @@ +## 1.4.2 + +* Update docs to correct path to country habitat stats. +* Update global and country habitat stats for 2022-01 period. + ## 1.4.1 * Do not automatically update the Redlist species timestamp. diff --git a/README.md b/README.md index e8bf4a1b..66fc0529 100644 --- a/README.md +++ b/README.md @@ -54,6 +54,11 @@ The current procedure for updating statistics is as follows: * Obtain the global and country statistics from the Ocean Plus Habitats team. * Ensure the country statistics CSVs conform to the format: `_country_output_--01.csv`. I.e. ensure that the match the current format within `lib/data/countries/habitat_coverage_protection/country/*.csv`. + +:sos: + +###### If received over Slack, you can quickly save to the simplest location on disk possible (as there is currently no "download all") and then move all by command line e.g. `mv ~/Desktop/*country*01-01.csv lib/data/habitat_coverage_protection/country/`. + * In each CSV, check that the columns are correct and that the data format appears to be the same according to previous months. Most commonly, you will need to rename `"iso_ter"` to `"iso3"` as the ISO column in each CSV.