From 589724993765e7f25b24bd9a446407da43ef639b Mon Sep 17 00:00:00 2001
From: Bryan Ngo <48371418+bdngo@users.noreply.github.com>
Date: Tue, 27 Feb 2024 18:27:40 -0800
Subject: [PATCH] simplify pathing to obey push dirs for node autoinsertion
 (#844)

---
 hammer/flowgraph/flowgraph.py |    5 +-
 poetry.lock                   | 1276 +++++++++++++++++----------------
 2 files changed, 674 insertions(+), 607 deletions(-)

diff --git a/hammer/flowgraph/flowgraph.py b/hammer/flowgraph/flowgraph.py
index 000ec81bc..722a8b057 100644
--- a/hammer/flowgraph/flowgraph.py
+++ b/hammer/flowgraph/flowgraph.py
@@ -201,7 +201,7 @@ def insert_auxiliary_actions(edge_list: dict[Node, list[Node]]) -> dict[Node, li
                     aux_node = Node(
                         aux_action,
                         parent.tool,
-                        os.path.join(os.path.dirname(parent.pull_dir), f"{aux_action}-dir"),
+                        parent.push_dir,
                         child.pull_dir,
                         parent.required_outputs,
                         [f"{aux_action}-out.json"],
@@ -211,9 +211,6 @@ def insert_auxiliary_actions(edge_list: dict[Node, list[Node]]) -> dict[Node, li
         edge_list_copy = edge_list.copy()
         for parent_idx, child_idx, aux_node in changes:
             parent, children = list(edge_list_copy.items())[parent_idx]
-            parent.push_dir = os.path.join(
-                os.path.dirname(parent.pull_dir),
-                f"{aux_node.action}-dir")
 
             child = children[child_idx]
             child.required_inputs = aux_node.required_outputs
diff --git a/poetry.lock b/poetry.lock
index d7e26da2a..5cc7905a2 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -1,25 +1,25 @@
-# This file is automatically @generated by Poetry 1.5.0 and should not be changed by hand.
+# This file is automatically @generated by Poetry 1.7.1 and should not be changed by hand.
 
 [[package]]
 name = "alabaster"
-version = "0.7.13"
-description = "A configurable sidebar-enabled Sphinx theme"
+version = "0.7.16"
+description = "A light, configurable Sphinx theme"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.9"
 files = [
-    {file = "alabaster-0.7.13-py3-none-any.whl", hash = "sha256:1ee19aca801bbabb5ba3f5f258e4422dfa86f82f3e9cefb0859b283cdd7f62a3"},
-    {file = "alabaster-0.7.13.tar.gz", hash = "sha256:a27a4a084d5e690e16e01e03ad2b2e552c61a65469419b907243193de1a84ae2"},
+    {file = "alabaster-0.7.16-py3-none-any.whl", hash = "sha256:b46733c07dce03ae4e150330b975c75737fa60f0a7c591b6c8bf4928a28e2c92"},
+    {file = "alabaster-0.7.16.tar.gz", hash = "sha256:75a8b99c28a5dad50dd7f8ccdd447a121ddb3892da9e53d1ca5cca3106d58d65"},
 ]
 
 [[package]]
 name = "astroid"
-version = "2.15.5"
+version = "2.15.8"
 description = "An abstract syntax tree for Python with inference support."
 optional = false
 python-versions = ">=3.7.2"
 files = [
-    {file = "astroid-2.15.5-py3-none-any.whl", hash = "sha256:078e5212f9885fa85fbb0cf0101978a336190aadea6e13305409d099f71b2324"},
-    {file = "astroid-2.15.5.tar.gz", hash = "sha256:1039262575027b441137ab4a62a793a9b43defb42c32d5670f38686207cd780f"},
+    {file = "astroid-2.15.8-py3-none-any.whl", hash = "sha256:1aa149fc5c6589e3d0ece885b4491acd80af4f087baafa3fb5203b113e68cd3c"},
+    {file = "astroid-2.15.8.tar.gz", hash = "sha256:6c107453dffee9055899705de3c9ead36e74119cee151e5a9aaf7f0b0e020a6a"},
 ]
 
 [package.dependencies]
@@ -32,108 +32,126 @@ wrapt = [
 
 [[package]]
 name = "babel"
-version = "2.12.1"
+version = "2.14.0"
 description = "Internationalization utilities"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "Babel-2.12.1-py3-none-any.whl", hash = "sha256:b4246fb7677d3b98f501a39d43396d3cafdc8eadb045f4a31be01863f655c610"},
-    {file = "Babel-2.12.1.tar.gz", hash = "sha256:cc2d99999cd01d44420ae725a21c9e3711b3aadc7976d6147f622d8581963455"},
+    {file = "Babel-2.14.0-py3-none-any.whl", hash = "sha256:efb1a25b7118e67ce3a259bed20545c29cb68be8ad2c784c83689981b7a57287"},
+    {file = "Babel-2.14.0.tar.gz", hash = "sha256:6919867db036398ba21eb5c7a0f6b28ab8cbc3ae7a73a44ebe34ae74a4e7d363"},
 ]
 
+[package.extras]
+dev = ["freezegun (>=1.0,<2.0)", "pytest (>=6.0)", "pytest-cov"]
+
 [[package]]
 name = "certifi"
-version = "2023.5.7"
+version = "2024.2.2"
 description = "Python package for providing Mozilla's CA Bundle."
 optional = false
 python-versions = ">=3.6"
 files = [
-    {file = "certifi-2023.5.7-py3-none-any.whl", hash = "sha256:c6c2e98f5c7869efca1f8916fed228dd91539f9f1b444c314c06eef02980c716"},
-    {file = "certifi-2023.5.7.tar.gz", hash = "sha256:0f0d56dc5a6ad56fd4ba36484d6cc34451e1c6548c61daad8c320169f91eddc7"},
+    {file = "certifi-2024.2.2-py3-none-any.whl", hash = "sha256:dc383c07b76109f368f6106eee2b593b04a011ea4d55f652c6ca24a754d1cdd1"},
+    {file = "certifi-2024.2.2.tar.gz", hash = "sha256:0569859f95fc761b18b45ef421b1290a0f65f147e92a1e5eb3e635f9a5e4e66f"},
 ]
 
 [[package]]
 name = "charset-normalizer"
-version = "3.1.0"
+version = "3.3.2"
 description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet."
 optional = false
 python-versions = ">=3.7.0"
 files = [
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 [[package]]
@@ -149,27 +167,28 @@ files = [
 
 [[package]]
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-version = "0.3.6"
-description = "serialize all of python"
+version = "0.3.8"
+description = "serialize all of Python"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
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 ]
 
 [package.extras]
 graph = ["objgraph (>=1.7.2)"]
+profile = ["gprof2dot (>=2022.7.29)"]
 
 [[package]]
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-version = "0.3.6"
+version = "0.3.8"
 description = "Distribution utilities"
 optional = false
 python-versions = "*"
 files = [
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 ]
 
 [[package]]
@@ -185,13 +204,13 @@ files = [
 
 [[package]]
 name = "exceptiongroup"
-version = "1.1.1"
+version = "1.2.0"
 description = "Backport of PEP 654 (exception groups)"
 optional = false
 python-versions = ">=3.7"
 files = [
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 [package.extras]
@@ -199,18 +218,19 @@ test = ["pytest (>=6)"]
 
 [[package]]
 name = "filelock"
-version = "3.12.0"
+version = "3.13.1"
 description = "A platform independent file lock."
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
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+docs = ["furo (>=2023.9.10)", "sphinx (>=7.2.6)", "sphinx-autodoc-typehints (>=1.24)"]
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+typing = ["typing-extensions (>=4.8)"]
 
 [[package]]
 name = "gdspy"
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 ]
 
 [package.dependencies]
 numpy = "*"
+typing-extensions = {version = "*", markers = "python_version < \"3.11\""}
 
 [package.extras]
-docs = ["sphinx", "sphinx-inline-tabs", "sphinx-rtd-theme"]
+docs = ["matplotlib", "sphinx", "sphinx-inline-tabs", "sphinx-rtd-theme"]
 
 [[package]]
 name = "idna"
-version = "3.4"
+version = "3.6"
 description = "Internationalized Domain Names in Applications (IDNA)"
 optional = false
 python-versions = ">=3.5"
 files = [
-    {file = "idna-3.4-py3-none-any.whl", hash = "sha256:90b77e79eaa3eba6de819a0c442c0b4ceefc341a7a2ab77d7562bf49f425c5c2"},
-    {file = "idna-3.4.tar.gz", hash = "sha256:814f528e8dead7d329833b91c5faa87d60bf71824cd12a7530b5526063d02cb4"},
+    {file = "idna-3.6-py3-none-any.whl", hash = "sha256:c05567e9c24a6b9faaa835c4821bad0590fbb9d5779e7caa6e1cc4978e7eb24f"},
+    {file = "idna-3.6.tar.gz", hash = "sha256:9ecdbbd083b06798ae1e86adcbfe8ab1479cf864e4ee30fe4e46a003d12491ca"},
 ]
 
 [[package]]
@@ -291,22 +320,22 @@ files = [
 
 [[package]]
 name = "importlib-metadata"
-version = "6.6.0"
+version = "7.0.1"
 description = "Read metadata from Python packages"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
-    {file = "importlib_metadata-6.6.0-py3-none-any.whl", hash = "sha256:43dd286a2cd8995d5eaef7fee2066340423b818ed3fd70adf0bad5f1fac53fed"},
-    {file = "importlib_metadata-6.6.0.tar.gz", hash = "sha256:92501cdf9cc66ebd3e612f1b4f0c0765dfa42f0fa38ffb319b6bd84dd675d705"},
+    {file = "importlib_metadata-7.0.1-py3-none-any.whl", hash = "sha256:4805911c3a4ec7c3966410053e9ec6a1fecd629117df5adee56dfc9432a1081e"},
+    {file = "importlib_metadata-7.0.1.tar.gz", hash = "sha256:f238736bb06590ae52ac1fab06a3a9ef1d8dce2b7a35b5ab329371d6c8f5d2cc"},
 ]
 
 [package.dependencies]
 zipp = ">=0.5"
 
 [package.extras]
-docs = ["furo", "jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"]
+docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (<7.2.5)", "sphinx (>=3.5)", "sphinx-lint"]
 perf = ["ipython"]
-testing = ["flake8 (<5)", "flufl.flake8", "importlib-resources (>=1.3)", "packaging", "pyfakefs", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)", "pytest-perf (>=0.9.2)"]
+testing = ["flufl.flake8", "importlib-resources (>=1.3)", "packaging", "pyfakefs", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-mypy (>=0.9.1)", "pytest-perf (>=0.9.2)", "pytest-ruff"]
 
 [[package]]
 name = "iniconfig"
@@ -321,30 +350,27 @@ files = [
 
 [[package]]
 name = "isort"
-version = "5.12.0"
+version = "5.13.2"
 description = "A Python utility / library to sort Python imports."
 optional = false
 python-versions = ">=3.8.0"
 files = [
-    {file = "isort-5.12.0-py3-none-any.whl", hash = "sha256:f84c2818376e66cf843d497486ea8fed8700b340f308f076c6fb1229dff318b6"},
-    {file = "isort-5.12.0.tar.gz", hash = "sha256:8bef7dde241278824a6d83f44a544709b065191b95b6e50894bdc722fcba0504"},
+    {file = "isort-5.13.2-py3-none-any.whl", hash = "sha256:8ca5e72a8d85860d5a3fa69b8745237f2939afe12dbf656afbcb47fe72d947a6"},
+    {file = "isort-5.13.2.tar.gz", hash = "sha256:48fdfcb9face5d58a4f6dde2e72a1fb8dcaf8ab26f95ab49fab84c2ddefb0109"},
 ]
 
 [package.extras]
-colors = ["colorama (>=0.4.3)"]
-pipfile-deprecated-finder = ["pip-shims (>=0.5.2)", "pipreqs", "requirementslib"]
-plugins = ["setuptools"]
-requirements-deprecated-finder = ["pip-api", "pipreqs"]
+colors = ["colorama (>=0.4.6)"]
 
 [[package]]
 name = "jinja2"
-version = "3.1.2"
+version = "3.1.3"
 description = "A very fast and expressive template engine."
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "Jinja2-3.1.2-py3-none-any.whl", hash = "sha256:6088930bfe239f0e6710546ab9c19c9ef35e29792895fed6e6e31a023a182a61"},
-    {file = "Jinja2-3.1.2.tar.gz", hash = "sha256:31351a702a408a9e7595a8fc6150fc3f43bb6bf7e319770cbc0db9df9437e852"},
+    {file = "Jinja2-3.1.3-py3-none-any.whl", hash = "sha256:7d6d50dd97d52cbc355597bd845fabfbac3f551e1f99619e39a35ce8c370b5fa"},
+    {file = "Jinja2-3.1.3.tar.gz", hash = "sha256:ac8bd6544d4bb2c9792bf3a159e80bba8fda7f07e81bc3aed565432d5925ba90"},
 ]
 
 [package.dependencies]
@@ -355,58 +381,59 @@ i18n = ["Babel (>=2.7)"]
 
 [[package]]
 name = "jsonpointer"
-version = "2.3"
+version = "2.4"
 description = "Identify specific nodes in a JSON document (RFC 6901)"
 optional = false
-python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
+python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*, !=3.6.*"
 files = [
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-    {file = "jsonpointer-2.3.tar.gz", hash = "sha256:97cba51526c829282218feb99dab1b1e6bdf8efd1c43dc9d57be093c0d69c99a"},
+    {file = "jsonpointer-2.4-py2.py3-none-any.whl", hash = "sha256:15d51bba20eea3165644553647711d150376234112651b4f1811022aecad7d7a"},
+    {file = "jsonpointer-2.4.tar.gz", hash = "sha256:585cee82b70211fa9e6043b7bb89db6e1aa49524340dde8ad6b63206ea689d88"},
 ]
 
 [[package]]
 name = "lazy-object-proxy"
-version = "1.9.0"
+version = "1.10.0"
 description = "A fast and thorough lazy object proxy."
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
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 ]
 
 [[package]]
@@ -435,61 +462,71 @@ testing = ["coverage", "pytest", "pytest-cov", "pytest-regressions"]
 
 [[package]]
 name = "markupsafe"
-version = "2.1.2"
+version = "2.1.5"
 description = "Safely add untrusted strings to HTML/XML markup."
 optional = false
 python-versions = ">=3.7"
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 ]
 
 [package.dependencies]
 mypy-extensions = ">=1.0.0"
 tomli = {version = ">=1.1.0", markers = "python_version < \"3.11\""}
-typing-extensions = ">=3.10"
+typing-extensions = ">=4.1.0"
 
 [package.extras]
 dmypy = ["psutil (>=4.0)"]
 install-types = ["pip"]
-python2 = ["typed-ast (>=1.4.0,<2)"]
+mypyc = ["setuptools (>=50)"]
 reports = ["lxml"]
 
 [[package]]
@@ -618,95 +656,102 @@ testing = ["beautifulsoup4", "coverage[toml]", "pytest (>=6,<7)", "pytest-cov",
 
 [[package]]
 name = "networkx"
-version = "3.1"
+version = "3.2.1"
 description = "Python package for creating and manipulating graphs and networks"
-category = "main"
 optional = false
-python-versions = ">=3.8"
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 [package.dependencies]
@@ -778,31 +823,32 @@ email = ["email-validator (>=1.0.3)"]
 
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 [package.extras]
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 colorama = {version = ">=0.4.5", markers = "sys_platform == \"win32\""}
 dill = [
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@@ -821,13 +867,13 @@ testutils = ["gitpython (>3)"]
 
 [[package]]
 name = "pytest"
-version = "7.3.1"
+version = "7.4.4"
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 optional = false
 python-versions = ">=3.7"
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 tomli = {version = ">=1.0.0", markers = "python_version < \"3.11\""}
 
 [package.extras]
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+testing = ["argcomplete", "attrs (>=19.2.0)", "hypothesis (>=3.56)", "mock", "nose", "pygments (>=2.7.2)", "requests", "setuptools", "xmlschema"]
 
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 python-versions = ">=3.6"
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 [[package]]
@@ -913,65 +970,79 @@ use-chardet-on-py3 = ["chardet (>=3.0.2,<6)"]
 
 [[package]]
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 python-versions = ">=3"
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 [package.dependencies]
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 [package.extras]
-docs = ["ryd"]
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 jinja2 = ["ruamel.yaml.jinja2 (>=0.2)"]
 
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 ]
 
 [[package]]
@@ -1063,66 +1134,69 @@ Sphinx = ">=2"
 
 [[package]]
 name = "sphinx-rtd-theme"
-version = "1.2.1"
+version = "1.3.0"
 description = "Read the Docs theme for Sphinx"
 optional = false
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,>=2.7"
 files = [
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-sphinxcontrib-jquery = {version = ">=2.0.0,<3.0.0 || >3.0.0", markers = "python_version > \"3\""}
+sphinx = ">=1.6,<8"
+sphinxcontrib-jquery = ">=4,<5"
 
 [package.extras]
 dev = ["bump2version", "sphinxcontrib-httpdomain", "transifex-client", "wheel"]
 
 [[package]]
 name = "sphinxcontrib-applehelp"
-version = "1.0.4"
+version = "1.0.8"
 description = "sphinxcontrib-applehelp is a Sphinx extension which outputs Apple help books"
 optional = false
-python-versions = ">=3.8"
+python-versions = ">=3.9"
 files = [
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 ]
 
 [package.extras]
 lint = ["docutils-stubs", "flake8", "mypy"]
+standalone = ["Sphinx (>=5)"]
 test = ["pytest"]
 
 [[package]]
 name = "sphinxcontrib-devhelp"
-version = "1.0.2"
-description = "sphinxcontrib-devhelp is a sphinx extension which outputs Devhelp document."
+version = "1.0.6"
+description = "sphinxcontrib-devhelp is a sphinx extension which outputs Devhelp documents"
 optional = false
-python-versions = ">=3.5"
+python-versions = ">=3.9"
 files = [
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 ]
 
 [package.extras]
 lint = ["docutils-stubs", "flake8", "mypy"]
+standalone = ["Sphinx (>=5)"]
 test = ["pytest"]
 
 [[package]]
 name = "sphinxcontrib-htmlhelp"
-version = "2.0.1"
+version = "2.0.5"
 description = "sphinxcontrib-htmlhelp is a sphinx extension which renders HTML help files"
 optional = false
-python-versions = ">=3.8"
+python-versions = ">=3.9"
 files = [
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 ]
 
 [package.extras]
 lint = ["docutils-stubs", "flake8", "mypy"]
+standalone = ["Sphinx (>=5)"]
 test = ["html5lib", "pytest"]
 
 [[package]]
@@ -1157,7 +1231,6 @@ test = ["flake8", "mypy", "pytest"]
 name = "sphinxcontrib-mermaid"
 version = "0.8.1"
 description = "Mermaid diagrams in yours Sphinx powered docs"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1167,32 +1240,34 @@ files = [
 
 [[package]]
 name = "sphinxcontrib-qthelp"
-version = "1.0.3"
-description = "sphinxcontrib-qthelp is a sphinx extension which outputs QtHelp document."
+version = "1.0.7"
+description = "sphinxcontrib-qthelp is a sphinx extension which outputs QtHelp documents"
 optional = false
-python-versions = ">=3.5"
+python-versions = ">=3.9"
 files = [
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 ]
 
 [package.extras]
 lint = ["docutils-stubs", "flake8", "mypy"]
+standalone = ["Sphinx (>=5)"]
 test = ["pytest"]
 
 [[package]]
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-version = "1.1.5"
-description = "sphinxcontrib-serializinghtml is a sphinx extension which outputs \"serialized\" HTML files (json and pickle)."
+version = "1.1.10"
+description = "sphinxcontrib-serializinghtml is a sphinx extension which outputs \"serialized\" HTML files (json and pickle)"
 optional = false
-python-versions = ">=3.5"
+python-versions = ">=3.9"
 files = [
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 ]
 
 [package.extras]
 lint = ["docutils-stubs", "flake8", "mypy"]
+standalone = ["Sphinx (>=5)"]
 test = ["pytest"]
 
 [[package]]
@@ -1208,13 +1283,13 @@ files = [
 
 [[package]]
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-version = "0.11.8"
+version = "0.12.4"
 description = "Style preserving TOML library"
 optional = false
 python-versions = ">=3.7"
 files = [
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 ]
 
 [[package]]
@@ -1244,161 +1319,156 @@ testing = ["flaky (>=3.4.0)", "freezegun (>=0.3.11)", "pathlib2 (>=2.3.3)", "psu
 
 [[package]]
 name = "types-pyyaml"
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+version = "6.0.12.12"
 description = "Typing stubs for PyYAML"
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 python-versions = "*"
 files = [
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 [[package]]
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+version = "4.10.0"
+description = "Backported and Experimental Type Hints for Python 3.8+"
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+python-versions = ">=3.8"
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 [[package]]
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 socks = ["pysocks (>=1.5.6,!=1.5.7,<2.0)"]
 zstd = ["zstandard (>=0.18.0)"]
 
 [[package]]
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 description = "Virtual Python Environment builder"
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 [package.extras]
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 description = "Module for decorators, wrappers and monkey patching."
 optional = false
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 ]
 
 [[package]]
 name = "zipp"
-version = "3.15.0"
+version = "3.17.0"
 description = "Backport of pathlib-compatible object wrapper for zip files"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
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 ]
 
 [package.extras]
-docs = ["furo", "jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"]
-testing = ["big-O", "flake8 (<5)", "jaraco.functools", "jaraco.itertools", "more-itertools", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)"]
+docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (<7.2.5)", "sphinx (>=3.5)", "sphinx-lint"]
+testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-ignore-flaky", "pytest-mypy (>=0.9.1)", "pytest-ruff"]
 
 [extras]
 asap7 = ["gdspy"]
@@ -1407,4 +1477,4 @@ asap7-gdstk = ["gdstk"]
 [metadata]
 lock-version = "2.0"
 python-versions = "^3.9"
-content-hash = "996f5bddd997723733c29696ca18dc8d908b0f54434af6b03d08ad2d78e00b12"
+content-hash = "ef4abec4b808a19b2c40e6838c29e52cf32eb02738d1677bc3d569a0a4d70f1e"