Running new STILT script

[ckbekker72]

I am trying to run my own R script with STILT that I have created by modifying the tutorial R scripts. However, when I attempt the R script, I get the following error:
[ckbekker@login1 STILT_runs]$ Rscript run_stilt_mariposa_jul28.R Initializing STILT Number of receptors: 24 Number of parallel threads: 8 Error in load_libs("dplyr", "ncdf4", "parallel", "raster", "rslurm", lib.loc = lib.loc) : could not find function "load_libs" Calls: source -> withVisible -> eval -> eval Execution halted
Do you know what this error might be related to or how I can figure out?
Thank you.

run_stilt_mariposa_jul28.txt

[ckbekker72]

Hi,
I have fixed the previous issue that I described but I am still having trouble getting the output files that I need with the same script.

I get the following message when running this script: "fatal: Not a git repository (or any parent up to mount point /u/home/c)
Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set)."

The script still appears to run all of the simulation IDs as requested but then the following warning message is reported: "Warning message:
In system("git rev-parse HEAD", intern = T) :running command 'git rev-parse HEAD' had status 128"

When I looked for the output files in the footprints folder that I specified, they are not there. Do you know what might be causing this issue and how I can attempt to solve it?

[tartanrunner25]

Are the trajectory files there? Would help isolate whether the STILT code runs or not and if the issue is strictly related to the generation of the footprints.

[Liuc03]

Hi,
I got the same error: "could not find function "load_libs" Calls: source -> withVisible -> eval -> eval Execution halted", May I ask how you fixed it?