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index.html
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<!DOCTYPE html>
<html lang="en">
<!--Based on https://github.com/hellt/pycatj-web/tree/master/pycatj-web-->
<head>
<meta charset="utf-8">
<meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
<meta http-equiv="x-ua-compatible" content="ie=edge">
<link rel='shortcut icon' type='image/x-icon' href='favicon.ico' />
<title><Tuple> | Azure Account Authentication for Illumina BaseSpace</title>
<!-- Font Awesome -->
<link rel="stylesheet" href="https://use.fontawesome.com/releases/v5.8.2/css/all.css">
<!-- Bootstrap core CSS -->
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<!-- Your custom styles (optional) -->
<link href="css/style.css" rel="stylesheet">
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<link rel="preconnect" href="https://fonts.gstatic.com" crossorigin>
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</head>
<body style="background: url('img/dna_abs.png') no-repeat center center fixed; -webkit-background-size: cover; -moz-background-size: cover; background-size: cover; -o-background-size: cover;">
<!--Main Navigation-->
<header>
<nav class="navbar fixed-top navbar-expand-lg navbar-dark blue scrolling-navbar">
<h1 class="navbar-brand">
<a href="https://www.tuple.xyz" target="_blank">
<!-- <img src="logo_white.png" height="40px" style="margin-right: 10px;"> -->
  <span style="font-family:Righteous,sans-serif; color:white"><Tuple></span>
</a>
<strong> ｜ Azure Account Authentication for Illumina BaseSpace</strong>
</h1>
<button class="navbar-toggler" type="button" data-toggle="collapse" data-target="#navbarSupportedContent"
aria-controls="navbarSupportedContent" aria-expanded="false" aria-label="Toggle navigation">
<span class="navbar-toggler-icon"></span>
</button>
<div class="collapse navbar-collapse" id="navbarSupportedContent">
<ul class="navbar-nav ml-auto">
<li class="nav-item">
<a class="nav-link" href="#" data-toggle="modal" data-target="#basicExampleModal">About</a>
</li>
</ul>
<ul class="navbar-nav nav-flex-icons">
<li class="nav-item">
<a class="nav-link" href="https://github.com/tuplexyz" target="_blank">
<i class="fab fa-github"></i></a>
</li>
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<a class="nav-link" href="https://www.linkedin.com/company/tuplexyz/" target="_blank">
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</ul>
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</nav>
</header>
<!--Main Navigation-->
<main>
<!-- Start your project here-->
<div class="container-fluid">
<div class="row mt-5 pt-5">
<div class="col-3">
<h2>Step 1: <small class="text-muted">Authenticate</small></h2>
<p>This step generates the authentication URI from Illumina BaseSpace for use in your Azure account.</p>
</div>
<div class="col-4">
<div class="form-group blue-border-focus">
<label for="service_url_input"><span style="font-family:Righteous,sans-serif">azbasespace</span> Service URL:</label>
<input type="text" class="form-control" id="service_url_input" value="https://azbasespace.azurewebsites.net">
</div>
<button type="button" id="auth_gen_btn" class="btn btn-primary">Generate Authentication URI</button>
</div>
<div class="col-4">
<div id="step1output" class="form-group blue-border-focus d-none">
<label for="auth_uri_out">Authentication URI:</label>
<input class="form-control text-monospace" id="auth_uri_out" readonly
placeholder="Your authentication URI will be shown here." style="font-size: 0.8rem">
</input>
</div>
<div class="form-group blue-border-focus">
<button type="button" id="auth_nav_btn" class="btn btn-danger" disabled>Authenticate</button>
</div>
</div>
</div>
</div>
<hr>
<div class="container-fluid">
<div class="row mt-5">
<div class="col-3">
<h2>Step 2: <small class="text-muted">Get Access Token</small></h2>
<p>This step provides the temporary access token needed to grant permissions for accessing Illumina BaseSpace using the Azure Data Factory service.</p>
</div>
<div class="col-4">
<div class="form-group blue-border-focus">
<label for="device_code_out">Device Code:</label>
<input class="form-control text-monospace" readonly id="device_code_out"
placeholder="Your device code will be shown here." style="font-size: 0.8rem">
</input>
</div>
<button type="button" id="token_gen_btn" class="btn btn-primary">Generate Temporary Access Token</button>
</div>
<div class="col-4">
<div class="form-group blue-border-focus">
<label for="token_out">Temporary Access Token:</label>
<input class="form-control text-monospace" id="token_out"
placeholder="Your access token will be shown here." style="font-size: 0.8rem">
</input>
<p class="text-muted"><small>You can also paste in a previous token to update project permissions.</small></p>
</div>
</div>
</div>
</div>
<hr>
<div class="container-fluid">
<div class="row mt-5">
<div class="col-3">
<h2>Step 3: <small class="text-muted">List Projects</small></h2>
<p>This step allows for individual projects to be selected to enable access from the Azure service.</p>
</div>
<div class="col-3">
<button type="button" id="list_proj_btn" class="btn btn-primary">List Projects</button>
<div id="step3output" class="form-group blue-border-focus d-none">
<label for="proj_out">Projects:</label>
<textarea class="form-control text-monospace" readonly id="proj_out" rows=3
placeholder="Your projects will be listed here." style="font-size: 0.8rem">
</textarea>
</div>
</div>
<div class="col-6">
<div class="blue-border-focus">
<table class="table d-none" id="proj_table">
<thead class="thead-dark">
<tr>
<th class="text-center" data-field="Id">Project ID</th>
<th class="text-center" data-field="Name">Project Name</th>
<th class="text-center" data-field="Auth">Grant Access?</th>
</tr>
</thead>
</table>
</div>
</div>
</div>
</div>
<hr>
<div class="container-fluid">
<div class="row mt-5">
<div class="col-3">
<h2>Step 4: <small class="text-muted">Authenticate for Project-Level Access</small></h2>
<p>This step grants access to the previously selected BaseSpace Projects to Azure.</p>
</div>
<div class="col-4">
<button type="button" id="auth_proj_btn" class="btn btn-primary">Generate Project-Level Auth URI</button>
<div id="step4outputa" class="form-group blue-border-focus d-none">
<label for="proj_ids_out">Granting Access to Project IDs:</label>
<textarea class="form-control text-monospace" readonly id="proj_ids_out" rows=2
placeholder="Your selected project IDs will be listed here." style="font-size: 0.8rem">
</textarea>
</div>
</div>
<div class="col-4">
<div id="step4outputb" class="form-group blue-border-focus d-none">
<label for="auth_uri_proj_out">Project Authentication URI:</label>
<input class="form-control text-monospace" id="auth_uri_proj_out" readonly
placeholder="Your project-level authentication URI will be shown here." style="font-size: 0.8rem">
</input>
</div>
<div class="form-group blue-border-focus">
<button type="button" id="auth_nav_proj_btn" class="btn btn-danger" disabled>Authenticate Projects</button>
</div>
</div>
</div>
</div>
<hr>
<div class="container-fluid">
<div class="row mt-5">
<div class="col-3">
<h2>Step 5: <small class="text-muted">Get Final Access Token</small></h2>
<p>This step, similar to Step 2, provides the final access token needed to grant permissions for accessing individual projects in Illumina BaseSpace using the Azure Data Factory service.</p>
</div>
<div class="col-4">
<div class="form-group blue-border-focus">
<label for="device_proj_code_out">Device Code:</label>
<input class="form-control text-monospace" readonly id="device_proj_code_out"
placeholder="Your device code will be shown here." style="font-size: 0.8rem">
</input>
</div>
<button type="button" id="proj_token_gen_btn" class="btn btn-primary">Generate Final Access Token</button>
</div>
<div class="col-4">
<div class="form-group blue-border-focus">
<label for="proj_token_out">Final Access Token:</label>
<input class="form-control text-monospace" id="proj_token_out"
placeholder="Your access token will be shown here." style="font-size: 0.8rem">
</input>
</div>
</div>
</div>
</div>
<hr>
<div class="container-fluid">
<div class="row mt-5">
<div class="col-6">
<h2>All Done!</h2>
<p>Once you've made it through steps 1-5, the <span style="font-family:Righteous,sans-serif">azbasespace</span> connector has been configured with your Illumina BaseSpace account.<br>Make sure save Final Access Token from above.</p>
</div>
</div>
</div>
</main>
<hr>
<footer class="footer fixed-bottom" style="background-color: #ffffff; bottom: 0; height: 60px; line-height: 60px; padding: 0 15px; position: relative;">
<p class="float-right"><a href="#">Back to top</a></p>
<p class="text-muted">Made with ♥ by <span style="font-family:Righteous,sans-serif"><Tuple></span>, Copyright © 2021 · <a href="" target="_blank">Privacy</a> · <a href="mailto:[email protected]" target="_blank">Contact Us</a></p>
</footer>
<!-- SCRIPTS -->
<!-- JQuery -->
<script type="text/javascript" src="js/jquery-3.4.1.min.js"></script>
<!-- Bootstrap tooltips -->
<script type="text/javascript" src="js/popper.min.js"></script>
<!-- Bootstrap core JavaScript -->
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<script type="text/javascript" src="js/bootstrap.js"></script>
<script src="https://unpkg.com/[email protected]/dist/bootstrap-table.min.js"></script>
<!-- MDB core JavaScript -->
<script type="text/javascript" src="js/mdb.min.js"></script>
<!-- authentication JavaScript -->
<script type="text/javascript" src="js/auth.js"></script>
</body>
<!-- Modal -->
<div class="modal fade" id="basicExampleModal" tabindex="-1" role="dialog" aria-labelledby="exampleModalLabel"
aria-hidden="true">
<div class="modal-dialog" role="document">
<div class="modal-content">
<div class="modal-header">
<h4 class="modal-title" id="exampleModalLabel">About This Tool</h4>
<button type="button" class="close" data-dismiss="modal" aria-label="Close">
<span aria-hidden="true">×</span>
</button>
</div>
<div class="modal-body">
<p>This site provides an easy-to-use UI for authenticating the <span style="font-family:Righteous,sans-serif"><Tuple></span> Azure Connector application with Illumina BaseSpace.</p>
<!-- <a href="" target="_blank">
<button type="button" class="btn btn-primary">Learn More</button>
</a> -->
<a href="http://www.tuple.xyz" target="_blank">
<img src="img/tuple_logo_bk.png" height="60px" style="float: right;">
</a>
<hr>
<p><small>Illumina® and BaseSpace® are registered trademarks of Illumina, Inc.<br>
<span style="font-family:Righteous,sans-serif"><Tuple></span> nor this data connector are affiliated or endorsed by Illumina.</small>
</p>
<span class="d-inline-block" tabindex="0" data-toggle="tooltip" title="Show debug text" style="float: right;">
<button type="button" id="show_debug_btn" class="btn-sm btn-outline-Secondary">
<i class="fas fa-eye"></i>
</button>
</span>
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