NAMESPACE

# Generated by roxygen2: do not edit by hand

export("property<-")
export(.msmsWorkspace)
export(.updateObject.RmbSpectrum2.formulaSource)
export(CAS2SMILES)
export(CTS.externalIdSubset)
export(CTS.externalIdTypes)
export(RmbDefaultSettings)
export(RmbSettingsTemplate)
export(add.formula)
export(addMB)
export(addPeaks)
export(addPeaksManually)
export(addProperty)
export(aggregateSpectra)
export(analyzeMsMs)
export(analyzeMsMs.formula)
export(analyzeMsMs.intensity)
export(annotator.default)
export(archiveResults)
export(buildRecord)
export(checkIsotopes)
export(checkSpectra)
export(cleanElnoise)
export(combineMultiplicities)
export(compoundlist2SDF)
export(createCompoundlist)
export(createMolfile)
export(dbe)
export(deprofile)
export(deprofile.fwhm)
export(deprofile.localMax)
export(deprofile.scan)
export(deprofile.spline)
export(exportMassbank)
export(fillback)
export(filterCompoundlist)
export(filterMultiplicity)
export(filterPeakSatellites)
export(filterPeaksMultiplicity)
export(findCAS)
export(findEIC)
export(findFormula)
export(findLevel)
export(findMass)
export(findMsMsHR)
export(findMsMsHR.direct)
export(findMsMsHR.mass)
export(findMsMsHR.ticms2)
export(findMsMsHRperMsp)
export(findMsMsHRperxcms)
export(findMsMsHRperxcms.direct)
export(findMz)
export(findMz.formula)
export(findName)
export(findProgress)
export(findRt)
export(findSmiles)
export(flatten)
export(formulastring.to.list)
export(gatherData)
export(gatherDataBabel)
export(gatherDataUnknown)
export(gatherPubChem)
export(getAnalyticalInfo)
export(getCSID)
export(getCactus)
export(getCtsKey)
export(getCtsRecord)
export(getField)
export(getMolecule)
export(getPcId)
export(is.valid.formula)
export(list.to.formula)
export(loadInfolist)
export(loadInfolists)
export(loadList)
export(loadMsmsWorkspace)
export(loadRmbSettings)
export(loadRmbSettingsFromEnv)
export(makeMollist)
export(makePeaksCache)
export(makeRecalibration)
export(mbWorkflow)
export(mergePeaks)
export(mergeSpectra)
export(msmsRead)
export(msmsRead.RAW)
export(msmsWorkflow)
export(multiply.formula)
export(newMbWorkspace)
export(newMsmsWorkspace)
export(order.formula)
export(parseMassBank)
export(parseMbRecord)
export(peaksMatched)
export(peaksUnmatched)
export(plotMbWorkspaces)
export(plotRecalibration)
export(plotRecalibration.direct)
export(ppm)
export(problematicPeaks)
export(processProblematicPeaks)
export(progressBarHook)
export(property)
export(readMbdata)
export(reanalyzeFailpeak)
export(reanalyzeFailpeaks)
export(recalibrate)
export(recalibrate.addMS1data)
export(recalibrate.identity)
export(recalibrate.linear)
export(recalibrate.loess)
export(recalibrate.mean)
export(recalibrateSingleSpec)
export(recalibrateSpectra)
export(resetInfolists)
export(resetList)
export(rmb_log_debug)
export(rmb_log_error)
export(rmb_log_fatal)
export(rmb_log_info)
export(rmb_log_success)
export(rmb_log_trace)
export(rmb_log_warn)
export(selectPeaks)
export(selectSpectra)
export(setAccessionBuilder)
export(smiles2mass)
export(spectraCount)
export(to.limits.rcdk)
export(toMassbank)
export(toRMB)
export(updateHeader)
export(updateSettings)
export(validate)
exportClasses(RmbSpectraSet)
exportClasses(RmbSpectraSetList)
exportClasses(RmbSpectrum2)
exportClasses(RmbSpectrum2List)
exportClasses(mbWorkspace)
exportClasses(msmsWorkspace)
exportMethods(addProperty)
exportMethods(checkSpectra)
exportMethods(cleanElnoise)
exportMethods(getData)
exportMethods(normalize)
exportMethods(peaksMatched)
exportMethods(peaksUnmatched)
exportMethods(selectPeaks)
exportMethods(selectSpectra)
exportMethods(setData)
exportMethods(show)
exportMethods(spectraCount)
exportMethods(toMassbank)
import(MSnbase, except="header")
import(R.utils, except="header")
import(Rcpp)
import(S4Vectors)
import(XML)
import(assertthat)
import(digest)
import(glue)
import(httr)
import(logger)
import(methods)
import(mzR)
import(rcdk)
import(readJDX)
import(rjson)
import(yaml)
importFrom(Biobase,"classVersion<-")
importFrom(Biobase,classVersion)
importFrom(Biobase,isCurrent)
importFrom(Biobase,isVersioned)
importFrom(ChemmineR,smiles2sdf)
importFrom(ChemmineR,validSDF)
importFrom(ChemmineR,write.SDF)
importFrom(data.table,fread)
importFrom(data.table,fwrite)
importFrom(stats,lm)
importFrom(stats,loess)
importFrom(stats,median)
importFrom(stats,predict)
importFrom(stats,smooth.spline)
importFrom(utils,URLencode)
importFrom(utils,capture.output)
importFrom(utils,data)
importFrom(utils,flush.console)
importFrom(utils,packageVersion)
importFrom(utils,read.csv)
importFrom(utils,read.csv2)
importFrom(utils,setTxtProgressBar)
importFrom(utils,str)
importFrom(utils,txtProgressBar)
importFrom(utils,type.convert)
importFrom(utils,write.csv)
importFrom(utils,write.table)
importFrom(webchem,cir_query)