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Cross coalescence rates: advanced analysis tutorial. #277
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just a note that print(
"Mean of cross-coalescence time distr: ",
2 * node_coal_weight @ ts.nodes_time / np.sum(node_coal_weight),
"Branch-mode divergence: ",
ts.divergence(sample_sets, indexes=indexes, mode='branch'),
) will only match if the tree sequence is trimmed first (which it isn't in this example) |
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@nspope sent me this, which is a good core for a new tutorial on cross coalescence rates. Probably worth waiting until some of the core functionality (e.g.
rates_from_ecdf
) is implemented in tskit.The text was updated successfully, but these errors were encountered: