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Compare performance for phylo operations to castor #14

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jeromekelleher opened this issue Aug 27, 2021 · 0 comments
Open

Compare performance for phylo operations to castor #14

jeromekelleher opened this issue Aug 27, 2021 · 0 comments

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@jeromekelleher
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A tough competitor would probably be castor (source code here):
Screenshot from 2021-08-27 08-08-42
The author is here, so I could ask for assistance if we want. I'm not sure if it does the things we want to compare to, though? Some things it does in the overlap are: count_tips_per_node; find_farthest_tip_pair; get_all_distances_to_root; get_mrca_of_set; get_pairwise_mrcas; hsp_max_parsimony; asr_max_parsimony.

Originally posted by @petrelharp in #13 (comment)

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