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requirements-py311.txt
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# This file was autogenerated by uv via the following command:
# uv pip compile pyproject.toml -o requirements-py311.txt --python-version=3.11
annoy==1.17.3
# via pacmap
async-timeout==5.0.1
# via kaleido
attrs==24.2.0
# via
# jsonschema
# referencing
biopython==1.84
# via dash-bio
blinker==1.9.0
# via flask
certifi==2024.8.30
# via requests
charset-normalizer==3.4.0
# via requests
choreographer==0.99.6
# via kaleido
click==8.1.7
# via flask
colour==0.1.5
# via dash-bio
contourpy==1.3.1
# via matplotlib
cycler==0.12.1
# via matplotlib
dash==2.18.2
# via
# protspace (pyproject.toml)
# dash-bio
# dash-bootstrap-components
# dash-daq
dash-bio==1.0.2
# via protspace (pyproject.toml)
dash-bootstrap-components==1.6.0
# via protspace (pyproject.toml)
dash-core-components==2.0.0
# via dash
dash-daq==0.5.0
# via protspace (pyproject.toml)
dash-html-components==2.0.0
# via dash
dash-iconify==0.1.2
# via protspace (pyproject.toml)
dash-table==5.0.0
# via dash
flask==3.0.3
# via dash
fonttools==4.55.0
# via matplotlib
geoparse==2.0.4
# via dash-bio
h5py==3.12.1
# via protspace (pyproject.toml)
idna==3.10
# via requests
importlib-metadata==8.5.0
# via dash
itsdangerous==2.2.0
# via flask
jinja2==3.1.4
# via flask
joblib==1.4.2
# via
# pynndescent
# scikit-learn
jsonschema==4.23.0
# via dash-bio
jsonschema-specifications==2024.10.1
# via jsonschema
kaleido==0.4.2
# via protspace (pyproject.toml)
kiwisolver==1.4.7
# via matplotlib
llvmlite==0.43.0
# via
# numba
# pynndescent
markupsafe==3.0.2
# via
# jinja2
# werkzeug
matplotlib==3.9.2
# via protspace (pyproject.toml)
nest-asyncio==1.6.0
# via dash
numba==0.60.0
# via
# pacmap
# pynndescent
# umap-learn
numpy==2.0.2
# via
# protspace (pyproject.toml)
# biopython
# contourpy
# geoparse
# h5py
# matplotlib
# numba
# pacmap
# pandas
# periodictable
# scikit-learn
# scipy
# umap-learn
packaging==24.2
# via
# matplotlib
# plotly
pacmap==0.7.6
# via protspace (pyproject.toml)
pandas==2.2.3
# via
# protspace (pyproject.toml)
# dash-bio
# geoparse
parmed==4.3.0
# via dash-bio
periodictable==1.7.1
# via dash-bio
pillow==11.0.0
# via matplotlib
plotly==5.24.1
# via
# protspace (pyproject.toml)
# dash
pynndescent==0.5.13
# via umap-learn
pyparsing==3.2.0
# via
# matplotlib
# periodictable
python-dateutil==2.9.0.post0
# via
# matplotlib
# pandas
pytz==2024.2
# via pandas
referencing==0.35.1
# via
# jsonschema
# jsonschema-specifications
requests==2.32.3
# via
# dash
# dash-bio
# geoparse
retrying==1.3.4
# via dash
rpds-py==0.21.0
# via
# jsonschema
# referencing
scikit-learn==1.5.2
# via
# protspace (pyproject.toml)
# dash-bio
# pacmap
# pynndescent
# umap-learn
scipy==1.14.1
# via
# dash-bio
# pynndescent
# scikit-learn
# umap-learn
setuptools==75.5.0
# via dash
six==1.16.0
# via
# python-dateutil
# retrying
tenacity==9.0.0
# via plotly
threadpoolctl==3.5.0
# via scikit-learn
tqdm==4.67.0
# via
# geoparse
# umap-learn
typing-extensions==4.12.2
# via dash
tzdata==2024.2
# via pandas
umap-learn==0.5.7
# via protspace (pyproject.toml)
urllib3==2.2.3
# via requests
werkzeug==3.0.6
# via
# dash
# flask
zipp==3.21.0
# via importlib-metadata