diff --git a/_pages/profiles.md b/_pages/profiles.md index b9d98a07..0e466db3 100644 --- a/_pages/profiles.md +++ b/_pages/profiles.md @@ -5,7 +5,7 @@ title: people description: Treangen lab members nav: true nav_order: 1 -display_categories: [developers, phd students, postdocs, research scientists, undergrads] +display_categories: [PhD students, Scientists, Software Engineers, UG Students] horizontal: true --- diff --git a/_profiles/apatel.md b/_profiles/apatel.md index 7d45cb29..ca436938 100644 --- a/_profiles/apatel.md +++ b/_profiles/apatel.md @@ -4,7 +4,7 @@ title: Anika Patel description: Undergraduate img: assets/img/apatel.jpg importance: 1 -category: undergrads +category: UG Students related_publications: false --- diff --git a/_profiles/bkille.md b/_profiles/bkille.md index 96f244c7..e0f2f965 100644 --- a/_profiles/bkille.md +++ b/_profiles/bkille.md @@ -4,10 +4,10 @@ title: Bryce Kille description: 4th Year Ph.D. student img: assets/img/bkille.jpg importance: 6 -category: phd students +category: PhD students related_publications: true --- -Bryce (4th year PhD student, Computer Science) received his MS in Bioinformatics and BS in Computer Science + Chemistry from the University of Illinois at Urbana-Champaign. As an undergraduate, he worked at Dow Agrosciences in both the computational biology and cheminformatics groups. His projects included developing software for phylogeny analysis and creating models for compound activity prediction. During his Master’s program, Bryce worked in a biochemistry lab developing software for genome mining as well as a on research project for creating bit-wise algorithms for the C++ STL. One of his main interests is casting biological and chemical problems into theoretical computer science questions. +Bryce (4th year PhD student, Computer Science) received his MS in Bioinformatics and BS in Computer Science + Chemistry from the University of Illinois at Urbana-Champaign. As an undergraduate, he worked at Dow Agrosciences in both the computational biology and cheminformatics groups. His projects included developing software for phylogeny analysis and creating models for compound activity prediction. During his Master’s program, Bryce worked in a biochemistry lab developing software for genome mining as well as a on research project for creating bit-wise algorithms for the C++ STL. One of his main interests is casting biological and chemical problems into theoretical computer science questions. Bryce is currently a NLM Biomedical Informatics predoctoral fellow (NIH grant T15LM007093). A few of Bryce's recent publications: {% cite kille2022multiple kille2023minmers kille2024parsnp %}. \ No newline at end of file diff --git a/_profiles/dongwei.md b/_profiles/dongwei.md index 348212c9..c2deb6ff 100644 --- a/_profiles/dongwei.md +++ b/_profiles/dongwei.md @@ -4,7 +4,7 @@ title: Dongwei Li description: 1st Year Ph.D. student img: assets/img/dongwei.jpg importance: 1 -category: phd students +category: PhD students related_publications: true --- diff --git a/_profiles/ehuang.md b/_profiles/ehuang.md index e416bb38..267fd278 100644 --- a/_profiles/ehuang.md +++ b/_profiles/ehuang.md @@ -4,7 +4,7 @@ title: Eddy Huang description: 3rd Year Ph.D. student img: assets/img/ehuang.jpg importance: 4 -category: phd students +category: PhD students related_publications: true --- diff --git a/_profiles/fquinanta.md b/_profiles/fquinanta.md index 79311f07..c4e4894f 100644 --- a/_profiles/fquinanta.md +++ b/_profiles/fquinanta.md @@ -4,7 +4,7 @@ title: Felix Quintana description: 3rd Year Ph.D. student img: assets/img/fquintana.jpg importance: 5 -category: phd students +category: PhD students related_publications: true --- diff --git a/_profiles/mbarnett.md b/_profiles/mbarnett.md index 9ffea953..482f80ff 100644 --- a/_profiles/mbarnett.md +++ b/_profiles/mbarnett.md @@ -1,13 +1,13 @@ --- layout: page title: R. Matt Barnett -description: Senior Research Programmer +description: Software Engineer, img: assets/img/mbarnett.jpg importance: 1 -category: developers +category: Software Engineers related_publications: true --- -Matt (Senior Research Programmer) received his Undergraduate Degree in Computer Science From Rice University. He provides professional software engineering support to multiple research projects in the Treangen lab. +Matt (Software Engineer) received his Undergraduate Degree in Computer Science From Rice University. He provides professional software engineering support to multiple research projects in the Treangen lab, previously contributing to [Harvest Variants](www.harvestvariants.info) and variant calling research endeavors specific to Illumina and Oxford Nanopore Sequencing. diff --git a/_profiles/mnute.md b/_profiles/mnute.md index 0c282805..9d98d9a5 100644 --- a/_profiles/mnute.md +++ b/_profiles/mnute.md @@ -1,12 +1,12 @@ --- layout: page title: Dr. Michael Nute -description: Research Scientist +description: Research Scientist, Department of Computer Science, Rice University img: assets/img/mnute.jpg importance: 1 -category: research scientists +category: Scientists related_publications: true --- -Mike (Research Scientist) received his Ph.D. in Statistics in 2019 from the University of Illinois at Urbana-Champaign where he was advised by Dr. Tandy Warnow in the Department of Computer Science and worked on algorithms related to multiple sequence alignment and phylogenetic tree estimation, in particular applying these methods to studying microbial communities. He was co-advised by Dr. Rebecca Stumpf in the Department of Anthropology where he and other lab members developed novel methods to compare the microbiomes of human and non-human primates. His research interest is in discovering a new applications for our understanding of microbial communities. +Mike (Research Scientist) received his Ph.D. in Statistics in 2019 from the University of Illinois at Urbana-Champaign where he was advised by Dr. Tandy Warnow in the Department of Computer Science and worked on algorithms related to multiple sequence alignment and phylogenetic tree estimation, in particular applying these methods to studying microbial communities. He was co-advised by Dr. Rebecca Stumpf in the Department of Anthropology where he and other lab members developed novel methods to compare the microbiomes of human and non-human primates. Previously, Mike was a [NLM Biomedical Informatics postdoctoral fellow](https://www.gulfcoastconsortia.org/home/training/bmi-nlm/), funded by NIH grant T15LM007093. His research interest is in discovering a new applications for our understanding of microbial communities and metagenomic analysis. Mike has provided leadership and guidance on numerous software tools our lab has developed, including: Bakdrive, Emu, Komb, Lemur, Parsnp 2.0, SeqScreen-Nano, and more. diff --git a/_profiles/nkokroko.md b/_profiles/nkokroko.md index ad96ee4b..9fe0fa58 100644 --- a/_profiles/nkokroko.md +++ b/_profiles/nkokroko.md @@ -1,10 +1,10 @@ --- layout: page title: Natalie Kokroko -description: 2nd Year Ph.D. student +description: 2nd Year Computer Science Ph.D. student, interested in microbiome analysis and metagenomics. img: assets/img/nkokroko.jpg importance: 3 -category: phd students +category: PhD students related_publications: true --- diff --git a/_profiles/rdoughty.md b/_profiles/rdoughty.md index 7c470ecb..69ff7b10 100644 --- a/_profiles/rdoughty.md +++ b/_profiles/rdoughty.md @@ -1,10 +1,10 @@ --- layout: page title: Ryan Doughty -description: 1st Year Ph.D. student +description: 1st Year Compter Science Ph.D. student, interested in metagenomics and virome analysis. img: assets/img/rdoughty.jpg importance: 2 -category: phd students +category: PhD students related_publications: true --- diff --git a/_profiles/xwang.md b/_profiles/xwang.md index b6de2983..ff5fe1da 100644 --- a/_profiles/xwang.md +++ b/_profiles/xwang.md @@ -1,10 +1,10 @@ --- layout: page title: Michael X. Wang -description: 6th Year Ph.D. student +description: 6th Year Bioengineering Ph.D. student. Lead developer of Olivar. img: assets/img/xwang.jpg importance: 7 -category: phd students +category: PhD students related_publications: true ---