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Tutorial Part

@tableofcontents

Firstly, clone repository in your workspace

git clone https://github.com/ctolon/PythonInterfaceOOP.git

Before you start, you need to do the installations in the readme file

P.S. Don't forget to install the O2 enviroment before running the scripts

Ex. alienv enter O2Physics/latest,QualityControl/latest

Assuming you have installed the argcomplete package, don't forget to source the bash script again in your O2 enviroment.

source argcomplete.sh

If you don't have time to read the documentation follow these steps:

For Linux Based System:

  • alienv enter O2Physics/latest,QualityControl/latest (Load Your alienv, if you want you can install lxplus version without using QC)
  • pip install argcomplete and pip3 install argcomplete
  • source argcomplete.sh

For MacOS Based System:

  • brew install bash
  • alienv enter O2Physics/latest,QualityControl/latest (Load Your alienv, if you want you can install lxplus version without using QC)
  • pip install argcomplete and pip3 install argcomplete
  • exec bash (temporary bash shell)
  • source argcomplete.sh

if not works:

  • sudo chsh -s /bin/bash <username>
  • source argcomplete.sh

if you used the command sudo chsh -s /bin/bash <username> after you are done with the scripts (It converts your system shell zsh to bash):

  • sudo chsh -s /bin/zsh <username> (It converts your system shell bash to zsh)

if you used the command exec bash you don't need to do anything.

Download Datas For Tutorials

You can Found MC Datas, pre-made JSON config files and DQ Skimmed datas for tutorial at: Click Here password: DQ

Create a new folder in NewAllWorkflows directory with mkdir Datas and move the downloaded datas here.

You can found Real Data for pp at : Click Here

You can found Real Data for PbPb at : Click Here

or Click Here

P.S: Dont forget the change name of AO2D.root files for interface and Move this datas to you previously create Datas Folder.

For PbPb Data : AO2D.root to AO2D_PbPbDataRun2_LHC15o.root

For pp Data : AO2D.root to AO2D_ppDataRun3_LHC22c.root

If you downloaded these datasets, you can start.

Workflows In Tutorials

  • For MC:
Workflow Dataset Skimmed Process Type Col Syst
tableMakerMC LHC21i3d2 No MuonOnlyWithCov
OnlyBCs		 J/ψ → μ+ μ− pp
dqEfficiency LHC21i3d2 Yes JpsiToMuMu J/ψ → μ+ μ− pp
tableMakerMC LHC21i3b No BarrelOnly
OnlyBCs		 J/ψ → e+ e− pp
dqEfficiency LHC21i3b Yes JpsiToEE J/ψ → e+ e− pp
tableMakerMC LHC21i3f2 No BarrelOnly
OnlyBCs		 hB → J/ψ + X, J/ψ → e+ e− pp
dqEfficiency LHC21i3f2 Yes JpsiToEE hB → J/ψ + X, J/ψ → e+ e− pp
  • For Data:
Workflow Dataset Skimmed Process Selection Col Syst
tableMaker LHC15o No BarrelOnlyWithCent
OnlyBCs		 J/ψ → e+ e− PbPb
tableReader LHC15o Yes JpsiToEE J/ψ → e+ e− PbPb
tableMaker LHC15o No FullWithCent
BarrelOnlyWithQvector
OnlyBCs		 J/ψ → e+ e− PbPb
tableReader LHC15o Yes VnJpsiToEE J/ψ → e+ e− PbPb
dqFlow LHC15o No - - PbPb
v0Selector LHC15o No - - PbPb
tableMaker LHC22c No MuonOnlyWithCov
OnlyBCs		 J/ψ → μ+ μ− pp
tableReader LHC22c Yes JpsiToMuMuVertexing J/ψ → μ+ μ− pp
filterPP fwdprompt No eventSelection
barrelTrackSelection
muonSelection		 All Events pp
Workflow Dataset Process Type Col Syst
dqEfficiency AO2D_Bc100 JpsiToMuMuVertexing
dileptonTrackDimuonMuonSelection		 Bc → J/ψ → (μ+ μ−) + μ pp
tableReader LHC15o JpsiToEE
dileptonHadron		 dileptonhadron PbPb

TO BE ADDED IN TUTORIALS (Not Prepared Yet):

Workflow Dataset Process Type Col Syst
dqEfficiency AO2D_Bplus JpsiToMuMuVertexing
dileptonTrackDimuonMuonSelection		 B+ → J/ψ + K, → J/ψ → e+ e− pp

Skimmed Datas In Tutorials

Reduced DQ skimmed data list created with tableMaker/tableMakerMC:

Data Dataset Used Workflow Selected Processes (from tableMaker)
reducedAod_ppMC_LHC21i3d2.root LHC21i3d2 tableMakerMC MuonOnlyWithCov
OnlyBCs
reducedAod_ppMC_LHC21i3b.root LHC21i3b tableMakerMC BarrelOnly
OnlyBCs
reducedAod_ppMC_LHC21i3f2.root LHC21i3f2 tableMakerMC BarrelOnly
OnlyBCs
reducedAod_ppMC_Bc100.root Bc100 tableMakerMC MuonOnlyWithCov
OnlyBCs
reducedAod_PbPbData_LHC15o.root LHC15o tableMaker BarrelOnlyWithCent
OnlyBCs
reducedAod_PbPbData_LHC15o_Flow.root LHC15o tableMaker FullWithCent
BarrelOnlyWithQvector
OnlyBCs
reducedAod_PbPbData_LHC15o_dileptonHadron.root LHC15o tableMaker BarrelOnly
OnlyBCs
reducedAod_ppData_LHC222c.root LHC222c tableMaker MuonOnlyWithCov
OnlyBCs

Reduced DQ Dileptons skimmed data list For Dilepton Analysis (dilepton-track and dilepton-hadron) created with tableReader/dqEfficiency:

Data Dataset Used Workflow Selected Processes (from tableMaker)
dileptonAOD_ppMC_BC100.root Bc100 dqEfficiency MuonOnlyWithCov
OnlyBCs
dileptonAOD_PbPbData_LHC15o_dileptonHadron.root LHC15o tableReader BarrelOnly
OnlyBCs

Pre-Made JSON configuration Files In Tutorials

Config JSON list created with Scripts.

Common JSON configs:

Config For Description
configAnalysis_LHC21i3b_MC.json MCRun3 Run dqEfficiency on LHC21i3b Simulation → reducedAod_ppMC_LHC21i3b.root
configAnalysis_LHC21i3d2_MC.json MCRun3 Run dqEfficiency on LHC21i3d2 Simulation → reducedAod_ppMC_LHC21i3d2.root
configAnalysis_LHC21i3f2_MC.json MCRun3 Run dqEfficiency on LHC21i3f2 Simulation → reducedAod_ppMC_LHC21i3f2.root
ConfigAnalysis_LHC15o_Data.json DataRun2 Run tableReader on LHC15o Data without flow → reducedAod_PbPbData_LHC15o.root
ConfigAnalysis_LHC15o_Flow_Data.json DataRun2 Run tableReader on LHC15o Data for Flow Analysis → reducedAod_PbPbData_LHC15o_Flow.root
ConfigAnalysis_LHC22c_Data.json DataRun3 Run tableReader on LHC22c Data → reducedAod_PbPbData_LHC15o.root
configTableMaker_LHC21i3b_MCRun3.json MCRun3 Run tableMakerMC on LHC21i3b Simulation → AO2D_ppMCRun3_LHC21i3b.root
configTableMaker_LHC21i3d2_MCRun3.json MCRun3 Run tableMakerMC on LHC21i3d2 Simulation → AO2D_ppMCRun3_LHC21i3d2.root
configTableMaker_LHC21i3f2_MCRun3.json MCRun3 Run tableMakerMC on LHC21i3f2 Simulation → AO2D_ppMCRun3_LHC21i3f2.root
ConfigTableMaker_LHC15o_DataRun2.json DataRun2 Run tableMaker on LHC15o without Flow → AO2D_PbPbDataRun2_LHC15o.root
ConfigTableMaker_LHC15o_Flow_DataRun2.json DataRun2 Run tableMaker on LHC15o For Flow Analysis → AO2D_PbPbDataRun2_LHC15o.root
ConfigTableMaker_LHC22c_DataRun3.json DataRun3 Run tableMaker on LHC22c Data → AO2D_ppDataRun3_LHC22c.root
configV0Selector_LHC15o_DataRun2.json DataRun2 Run v0Selector on LHC15o Data → AO2D_PbPbDataRun2_LHC15o.root

JSON configs for Single Workflows:

Config For Description
configFilterPP_fwdprompt_Run3.json MCRun3 Run filterPP on fwdprompt → AO2D_fwdprompt.root
configFlow_LHC15o_DataRun2.json DataRun2 Run dqFlow on LHC15o Data → AO2D_PbPbDataRun2_LHC15o.root
configV0Selector_LHC15o_DataRun2.json DataRun2 Run v0Selector on LHC15o Data → AO2D_PbPbDataRun2_LHC15o.root

JSON configs for dilepton-hadron and dilepton-track analysis:

Config For Description
configTableMaker_Bc100_MCRun3.json MCRun3 Run tableMakerMC on Bc100 Simulation for prepare dilepton-track analysis → AO2D_Bc100.root
configAnalysis_Bc100_MC.json MCRun3 Run dqEfficiency on Bc100 Simulation for prepare skimmed dileptons output → reducedAod_ppMC_Bc100.root
configAnalysisDilepton_Bc100_MC.json MCRun3 Run dqEfficiency on Bc100 Simulation for dilepton analysis → dileptonAOD_ppMC_BC100.root
configTableMaker_LHC15o_DileptonHadron_DataRun2.json DataRun2 Run tableMaker on LHC15o Data for prepare dilepton-hadron analysis → AO2D_PbPbDataRun2_LHC15o.root
configAnalysis_LHC15o_dileptonHadron_Data.json DataRun2 Run tableReader on LHC15o Data for prepare skimmed dileptons output → reducedAod_PbPbData_LHC15o_dileptonHadron.root
configAnalysisDilepton_LHC15o_dileptonHadron_Data.json DataRun2 Run tableReader on LHC15o Data for dilepton analysis → reducedAod_PbPbData_LHC15o_dileptonHadron.root

P.S. Root files are inputs for JSON configs

MC Part

IMPORTANT P.S If your O2 version is new, you will get DF_2589470057001/O2trackdca not found error in Run 3 Barrel MC simulations. This is because there are some changes in the MC data model after the O2 updates. To solve this problem, you can work on an older version on LXPLUS (before 28 august) or you can look at new productions on the grid and test them for shared AO2D.

Errors Appears On This Shared Datasets:

  • LHC21i3b

  • LHC21i3f2

Run tableMakerMC on LHC21i3d2 (jpsi to MuMu pp Run3Simulation)

Command To Run:

python3 runTableMakerMC.py configs/configTableMakerMCRun3.json -runMC --aod Datas/AO2D_ppMCRun3_LHC21i3d2.root --process MuonOnlyWithCov OnlyBCs --syst pp --cfgWithQA true --cfgMCsignals muFromJpsi Jpsi muon --cfgMuonCuts muonQualityCuts muonTightQualityCutsForTests --add_track_prop --debug debug --logFile

Run dqEfficiency on MC (LHC21i3d2 pp Run3Simulation)

You need to produce reducedAod.root file with tableMakerMC in previous step.

Command To Run:

python3 runDQEfficiency.py configs/configAnalysisMC.json --aod reducedAod.root --analysis muonSelection eventSelection sameEventPairing --process JpsiToMuMu --cfgMuonCuts muonQualityCuts muonTightQualityCutsForTests --cfgMuonMCSignals muFromJpsi --cfgBarrelMCGenSignals Jpsi --cfgBarrelMCRecSignals mumuFromJpsi dimuon --debug debug --logFile

Run tablemakerMC on LHC21i3b (Prompt jpsi to dielectron pp Run3Simulation)

Command To Run:

python3 runTableMakerMC.py configs/configTableMakerMCRun3.json -runMC --aod Datas/AO2D_ppMCRun3_LHC21i3b.root --process OnlyBCs BarrelOnly --syst pp --cfgBarrelTrackCuts jpsiO2MCdebugCuts --cfgMCsignals electronPrimary eFromJpsi Jpsi LMeeLF LMeeLFQ --debug debug --logFile

Run dqEfficiency on MC (LHC21i3b pp Run3Simulation)

You need to produce reducedAod.root file with tableMakerMC in previous step.

Command To Run:

python3 runDQEfficiency.py configs/configAnalysisMC.json --aod reducedAod.root --analysis trackSelection eventSelection sameEventPairing --process JpsiToEE --cfgQA true --cfgBarrelMCGenSignals Jpsi --cfgBarrelMCRecSignals eeFromJpsi dielectron --cfgTrackCuts jpsiO2MCdebugCuts --cfgTrackMCSignals eFromJpsi --debug debug --logFile

Run tablemakerMC on LHC21i3f2 (Non-Prompt jpsi to dielectron pp Run3Simulation)

Command To Run:

python3 runTableMakerMC.py configs/configTableMakerMCRun3.json -runMC --aod Datas/AO2D_ppMCRun3_LHC21i3f2.root --process OnlyBCs BarrelOnly --syst pp --cfgBarrelTrackCuts jpsiO2MCdebugCuts --cfgMCsignals electronPrimary eFromJpsi eFromNonpromptJpsi eFromLMeeLF LMeeLF Jpsi everythingFromBeauty --debug debug --logFile

Run dqEfficiency on LHC21i3f2 (LHC21i3f2 pp Run3Simulation)

You need to produce reducedAod.root file with tableMakerMC in previous step.

Command To Run:

python3 runDQEfficiency.py configs/configAnalysisMC.json --aod reducedAod.root --analysis trackSelection eventSelection sameEventPairing --process JpsiToEE --cfgQA true --cfgBarrelMCGenSignals Jpsi nonPromptJpsi --cfgBarrelMCRecSignals eeFromJpsi dielectron --cfgTrackCuts jpsiO2MCdebugCuts --cfgTrackMCSignals eFromJpsi eFromNonpromptJpsi --debug debug --logFile

Data Part

Run tableMaker on LHC15o (LHC15o PbPb Run2Data)

Command To Run:

python3 runTableMaker.py configs/configTableMakerDataRun2.json -runData --aod Datas/AO2D_PbPbDataRun2_LHC15o.root --process OnlyBCs BarrelOnlyWithCent --syst PbPb --cfgWithQA true --est Run2V0M --cfgBarrelTrackCuts jpsiPID1 jpsiPID2 --add_fdd_conv --debug debug --logFile

Run tableReader on LHC15o (LHC15o PbPb Run2Data)

You need to produce reducedAod.root file with tableMaker in previous step.

Command To Run:

python3 runTableReader.py configs/configAnalysisData.json --aod reducedAod.root --analysis eventSelection trackSelection eventMixing sameEventPairing --process JpsiToEE --cfgQA true --cfgTrackCuts jpsiPID1 jpsiPID2 --debug debug --logFile

Run tableMaker on LHC15o With Generic Flow Analysis (LHC15o PbPb Run2Data)

Command To Run:

python3 runTableMaker.py configs/configTableMakerDataRun2.json -runData --aod Datas/AO2D_PbPbDataRun2_LHC15o.root --process OnlyBCs FullWithCent BarrelOnlyWithQvector --syst PbPb --cfgWithQA true --est Run2V0M --cfgBarrelTrackCuts jpsiPID1 jpsiPID2 --add_fdd_conv --debug debug --logFile

Run tableReader on LHC15o with Generic Flow Analysis (LHC15o PbPb Run2Data)

You need to produce reducedAod.root file with tableMaker in previous step.

Command To Run:

python3 runTableReader.py configs/configAnalysisData.json --aod reducedAod.root --analysis eventSelection trackSelection eventMixingVn sameEventPairing --process VnJpsiToEE --cfgQA true --cfgTrackCuts jpsiPID1 jpsiPID2 --debug debug --logFile

Run dqFlow on LHC15o (LHC15o PbPb Run2Data)

Command To Run:

python3 runDQFlow.py configs/configFlowDataRun2.json --aod Datas/AO2D_PbPbDataRun2_LHC15o.root --syst PbPb --cfgWithQA true --est Run2V0M --FT0 Run2 --cfgBarrelTrackCuts jpsiPID1 jpsiPID2 --cfgMuonCuts muonQualityCuts muonTightQualityCutsForTests --isVertexZeq false --add_fdd_conv --debug debug --logFile

Run v0Selector on LHC15o (LHC15o PbPb Run2Data)

Command To Run:

python3 runV0selector.py configs/configV0SelectorDataRun2.json --aod Datas/AO2D_PbPbDataRun2_LHC15o.root --add_fdd_conv --add_weakdecay_ind --isVertexZeq false

Run tableMaker on LHC22c (LHC22c pp Run3Data)

Command To Run:

python3 runTableMaker.py configs/configTableMakerDataRun3.json -runData --aod Datas/AO2D_ppDataRun3_LHC22c.root --process OnlyBCs MuonOnlyWithCov --syst pp --cfgWithQA true --cfgMuonsCuts muonQualityCuts --cfgMuonCuts muonQualityCuts muonTightQualityCutsForTests --add_track_prop --isVertexZeq false --debug debug --logFile

Run tableReader on Data (LHC22c pp Run3Data)

You need to produce reducedAod.root file with tableMaker in previous step.

Command To Run:

python3 runTableReader.py configs/configAnalysisData.json --aod reducedAod.root --analysis eventSelection muonSelection sameEventPairing --process JpsiToMuMuVertexing --cfgQA true --cfgMuonCuts muonQualityCuts muonTightQualityCutsForTests --debug debug --logFile

Run filterPP on fwdprompt(From Hands-on-Session II)

Command To Run:

python3 runFilterPP.py configs/configFilterPPDataRun3.json --aod Datas/AO2D_fwdprompt.root --process barrelTrackSelection eventSelection muonSelection --syst pp --cfgBarrelTrackCuts jpsiO2MCdebugCuts jpsiPID2 --cfgBarrelSels jpsiO2MCdebugCuts:pairNoCut:1 jpsiPID2::1 --cfgMuonsCuts muonLowPt muonHighPt muonLowPt --cfgMuonSels muonLowPt::1 muonHighPt::1 muonLowPt:pairUpsilon:1 --isVertexZeq false --debug debug --logFile

P.S. Cuts Needs to optimized.

Special Part : Dilepton Analysis For Non-Standart Existing Workflows in DQ

This section includes analysis with non-standard workflows in DQ workflows. These analyzes are carried out in 3 stages:

  1. DQ skimmed data is created with TableMaker/tableMakerMC (input: AO2D.root, output: AnalysisResults.root)

  2. DQ skimmed extra dilepton tables are created with tableReader/dqEfficiency and with this way new DQ skimmed data with extra dilepton tables are created on dileptonAod.root, Normally reducedAod.root that does not contains dilepton tables (input : reducedAod.root, output: AnalysisResults.root and dileptonAod.root)

  3. With tableReader/dqEfficiency, analysis is performed on DQ skimmed dilepton data created earlier (input: dileptonAod.root and output: AnalysisResults.root)

MC : Dilepton Track Analysis (On Bc Simulation)

First Command To Run:

python3 runTableMakerMC.py configs/configTableMakerMCRun3.json -runMC --aod Datas/AO2D_Bc100.root --process MuonOnlyWithCov OnlyBCs --syst pp --cfgMCsignals Jpsi Bc anyBeautyHadron --cfgMuonCuts matchedGlobal --cfgMuonLowPt 0.0 --debug debug --logFile

Second Command To Run:

python3 runDQEfficiency.py configs/configAnalysisMC.json --aod reducedAod.root --analysis eventSelection muonSelection sameEventPairing --process JpsiToMuMuVertexing --cfgQA true --cfgMuonCuts matchedGlobal --cfgMuonMCSignals muon muFromJpsi muFromBc dimuon --cfgBarrelMCGenSignals Jpsi --cfgBarrelMCRecSignals mumuFromJpsi --cfgBarrelDileptonMCRecSignals mumuFromJpsiFromBc mumumuFromBc --cfgBarrelDileptonMCGenSignals Jpsi --debug debug --logFile

Third Command To Run:

python3 runDQEfficiency.py configs/configAnalysisMC.json --aod dileptonAOD.root --analysis eventSelection muonSelection dileptonTrackDimuonMuonSelection sameEventPairing --process JpsiToMuMuVertexing --cfgMuonCuts matchedGlobal --cfgMuonMCSignals muon muFromJpsi muFromBc dimuon --cfgBarrelMCGenSignals Jpsi --cfgBarrelMCRecSignals mumuFromJpsi --cfgBarrelDileptonMCRecSignals mumuFromJpsiFromBc mumumuFromBc --cfgBarrelDileptonMCGenSignals Jpsi --debug debug --logFile

Data : Dilepton Hadron Analysis (On PbPb Data LHC15o)

First Command To Run:

python3 runTableMaker.py configs/configTableMakerDataRun2.json -runData --aod Datas/AO2D_PbPbDataRun2_LHC15o.root --process OnlyBCs BarrelOnly --syst PbPb --cfgWithQA true --est Run2V0M --cfgBarrelTrackCuts jpsiPID1 jpsiPID2 --add_fdd_conv --debug debug --logFile

Second Command To Run:

python3 runTableReader.py configs/configAnalysisData.json --aod reducedAod.root --analysis eventSelection trackSelection sameEventPairing --process JpsiToEE --cfgQA true --cfgTrackCuts jpsiPID1 jpsiPID2 --debug debug --logFile

Third Command To Run:

python3 runTableReader.py configs/configAnalysisData.json --aod dileptonAOD.root --analysis eventSelection trackSelection sameEventPairing dileptonHadron --process JpsiToEE --cfgQA true --cfgTrackCuts jpsiPID1 jpsiPID2 --debug debug --logFile

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