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ncird-id

Here are 6 public repositories matching this topic...

CDCgov / seqsender

Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories

bioinformatics-pipeline genbank ncbi-submission ncbi-genbank cdc sra ncbi-sra ncbi-biosamples gisaid gisaid-uploader biosample gisaid-format gisaid-upload seqsender ncird ncird-id cdc-influenza-division

Updated Dec 11, 2024
HTML

CDCgov / udf-bioutils

Bioinformatics related user-defined functions for Cloudera Impala.

bioinformatics analytics impala-sql ncird-id cdc-influenza-division

Updated Oct 30, 2024
C++

editMSA

CDCgov / editMSA

A collection of scripts for editing and manipulating multiple sequence alignment files.

ncird-id cdc-influenza-division

Updated May 20, 2024
Perl

CDCgov / clean-genes

A rust crate that automatically cleans up a gene alignment by trimming to ORF and identifying and/or removing problematic sequences.

data-science bioinformatics fasta data-normalization data-cleaning sequence-alignment sequence-analysis sequence-annotation ncird ncird-id data-normalisation cdc-influenza-division

Updated Dec 10, 2024
Rust

CDCgov / app-squared

Protein analysis pipeline for characterizing influenza antigenic drift

ncird ncird-id

Updated Aug 12, 2024
Python

CDCgov / ifx-convert

converter conversion file-format ncird-id cdc-influenza-division

Updated Aug 5, 2024
Perl

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