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Comparisons.md

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Survivors of the Sea

Vegetative vs. resting cells

R05 0d vs. 49d R05 0d vs. 56d R05 0d vs. 72d R05 0d vs. 91d R05 0d vs. 126d R05 0d vs. 189d GF04 0d vs. 49d GF04 0d vs. 56d GF04 0d vs. 72d GF04 0d vs. 91d GF04 0d vs. 126d GF04 0d vs. 189d Compare between early/late resting stages?

PRJEB22707

Presence/absence of copepods

65h With vs. without copepod 89h With vs. without copepod Compare the timepoints, too?

  • Confirm that only Calanus finmarchicus copepod was used in this experiment (implied by NCBI page)

PRJEB33171

Sex-related genes

Comparisons used in paper:

  • Asexual large cell No change vs. salinity shift
    • T1 and T2
  • Sexual vs. asexual large cell under salinity shift
    • T1 and T2

(T1 = 40h, T2 = 52h)

PRJNA248394

MMETSP

???

PRJNA772794

Salinity

8 vs. 16 - 8 vs. 24 - All three combos for all eight strains below 16 vs. 24 -

A.2.21b Effect of salinity on A.2.21b B.2.19b Effect of salinity on B.2.19b D.1.27a Effect of salinity on D.1.27a F.1.2a Effect of salinity on F.1.2a I.3.11a Effect of salinity on I.3.11a J.3.42b Effect of salinity on J.3.42b K.3.3a Effect of salinity on K.3.3a P.2.6a Effect of salinity on P.2.6a

PRJNA912555

Season/growth phase

S1 vs. S2 Effect of growth phase in summer W1 vs. W2 Effect of growth phase in winter S1 vs. W1 Effect of season on early growth phase S2 vs. W2 Effect of season on late growth phase