diff --git a/src/main.cpp b/src/main.cpp index d1be387..27c0f18 100644 --- a/src/main.cpp +++ b/src/main.cpp @@ -132,8 +132,8 @@ int main(int argc, char **argv) { std::uint8_t ploidy = 2; - std::uint8_t kmer_len = 15; - std::uint8_t window_len = 5; + std::uint8_t kmer_len = 31; + std::uint8_t window_len = 17; std::uint16_t bandwidth = 500; std::uint16_t chain_n = 4; std::uint16_t match_n = 100; @@ -307,9 +307,10 @@ int main(int argc, char **argv) { raven::Graph_Constructor graph_constructor{graph, thread_pool}; if (!skip_contruction){ - graph_constructor.Construct(sequences, disagreement, split, kMaxNumOverlaps, ploidy, kmer_len, window_len, bandwidth, chain_n, match_n, gap_size, freq, hpc, paf, valid_region_size); + std::cout << "Constructing graph with params: kmer_size:" << kmer_len << " winodw_size:" << window_len << " " << std::endl; + graph_constructor.Construct(sequences, disagreement, split, kMaxNumOverlaps, ploidy, kmer_len, window_len, bandwidth, chain_n, match_n, gap_size, freq, hpc, paf, valid_region_size); } else { - graph_constructor.LoadFromGfa(input_gfa_path); + graph_constructor.LoadFromGfa(input_gfa_path); } graph.PrintGfa("post_construction.gfa");