DESCRIPTION

Package: plyranges
Type: Package
Title: A fluent interface for manipulating GenomicRanges
Version: 1.23.2
Authors@R: c(
      person("Stuart", "Lee", role = c("aut"), 
             comment = c(ORCID = "0000-0003-1179-8436")),
      person("Michael", "Lawrence", role = c("aut", "ctb")),
      person("Dianne", "Cook", role = c("aut", "ctb")),
      person("Spencer", "Nystrom", role = c("ctb"), 
             comment = c(ORCID = "0000-0003-1000-1579")),
      person("Pierre-Paul", "Axisa", role=c("ctb")),
      person("Michael", "Love", role = c("ctb","cre"),
             email = "michaelisaiahlove@gmail.com")
      )
Maintainer: Michael Love <michaelisaiahlove@gmail.com>
Description: A dplyr-like interface for interacting with the common Bioconductor 
    classes Ranges and GenomicRanges. By providing a grammatical
    and consistent way of manipulating these classes their accessiblity for new
    Bioconductor users is hopefully increased.
Depends:
  R (>= 3.5),
  BiocGenerics,
  IRanges (>= 2.12.0),
  GenomicRanges (>= 1.28.4)
Imports:
  methods,
  dplyr, 
  rlang (>= 0.2.0), 
  magrittr,
  tidyselect (>= 1.0.0),
  rtracklayer,
  GenomicAlignments,
  GenomeInfoDb,
  Rsamtools,
  S4Vectors (>= 0.23.10),
  utils
biocViews: Infrastructure, DataRepresentation, WorkflowStep, Coverage
BugReports: https://github.com/tidyomics/plyranges
License: Artistic-2.0
Encoding: UTF-8
ByteCompile: true
Suggests: 
    knitr,
    BiocStyle,
    rmarkdown,
    testthat (>= 2.1.0),
    HelloRanges,
    HelloRangesData,
    BSgenome.Hsapiens.UCSC.hg19,
    pasillaBamSubset,
    covr,
    ggplot2
VignetteBuilder: knitr
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
Collate: 
    'class-AnchoredRanges.R'
    'class-Operator.R'
    'class-DeferredGenomicRanges.R'
    'class-GroupedRanges.R'
    'dplyr-arrange.R'
    'dplyr-filter.R'
    'dplyr-groups.R'
    'dplyr-mutate.R'
    'dplyr-select.R'
    'dplyr-slice.R'
    'dplyr-summarize.R'
    'endo-coverage.R'
    'endo-tile.R'
    'io-bam.R'
    'io-bed.R'
    'io-bigwig.R'
    'io-gff.R'
    'io-wig.R'
    'methods-DeferredGenomicRanges.R'
    'methods-Operator.R'
    'plyranges.R'
    'ranges-add-distance.R'
    'ranges-anchors.R'
    'ranges-arithmetic-flank.R'
    'ranges-arithmetic-setters.R'
    'ranges-arithmetic-shift.R'
    'ranges-arithmetic-stretch.R'
    'ranges-bind.R'
    'ranges-chop.R'
    'ranges-colwise.R'
    'ranges-construct.R'
    'ranges-disjoin.R'
    'ranges-eval-quo.R'
    'ranges-eval.R'
    'ranges-expand.R'
    'ranges-genomeinfo.R'
    'ranges-join-follow.R'
    'ranges-join-nearest.R'
    'ranges-join-precede.R'
    'ranges-overlap-count.R'
    'ranges-overlap-filter.R'
    'ranges-overlap-find.R'
    'ranges-overlap-groups.R'
    'ranges-overlap-joins-intersect.R'
    'ranges-overlap-joins-outer.R'
    'ranges-overlap-self-joins.R'
    'ranges-pairs.R'
    'ranges-rangewise-setops.R'
    'ranges-reduce.R'
    'ranges-setops.R'
    'reexports.R'