diff --git a/.Rbuildignore b/.Rbuildignore index 36da0fa..0dd210b 100644 --- a/.Rbuildignore +++ b/.Rbuildignore @@ -9,3 +9,4 @@ ^\.Rprofile$ ^packrat/ ^to-cor-df\.png$ +revdep \ No newline at end of file diff --git a/.travis.yml b/.travis.yml index 8b0824a..e4f23c0 100644 --- a/.travis.yml +++ b/.travis.yml @@ -4,8 +4,7 @@ language: R sudo: false cache: packages -r_github_packages: - - jimhester/covr - -after_success: - - Rscript -e 'covr::codecov()' \ No newline at end of file +include: + - r: release + - r: oldrel + - r: devel diff --git a/DESCRIPTION b/DESCRIPTION index 892c28a..0adf5ca 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,6 +1,6 @@ Package: corrr Type: Package -Version: 0.2.1.9000 +Version: 0.3.0 Title: Correlations in R Description: A tool for exploring correlations. It makes it possible to easily perform routine tasks when @@ -16,8 +16,7 @@ Authors@R: c( URL: https://github.com/drsimonj/corrr BugReports: https://github.com/drsimonj/corrr/issues Depends: - R (>= 3.3.0), - dplyr (>= 0.5.0) + R (>= 3.3.0) LazyData: yes License: MIT + file LICENSE RoxygenNote: 6.0.1 @@ -29,6 +28,7 @@ Suggests: DBI, RSQLite Imports: + dplyr (>= 0.5.0), magrittr (>= 1.5), tidyr (>= 0.5.1), ggplot2 (>= 2.2.0), diff --git a/NEWS.md b/NEWS.md index 69fb2a7..cc710b8 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,4 +1,4 @@ -# corrr 0.2.1.9000 +# corrr 0.3.0 ## Small breaking changes @@ -28,6 +28,8 @@ The `diagonal` argument of `as_matrix` and `as_matrix.cor_df` is now an optional - During the development of this version, ggplot v2.2.0 was released. Many changes in the plotting functions have been made to handle new features in the updated version of ggplot2. +- Improvements to the package folder structure + # corrr 0.2.1 ## New Functionality diff --git a/R/output.R b/R/output.R index 10db122..f9e2948 100644 --- a/R/output.R +++ b/R/output.R @@ -12,6 +12,7 @@ #' @export #' @examples #' # Examples with correlate() +#' library(dplyr) #' mtcars %>% correlate() %>% fashion() #' mtcars %>% correlate() %>% fashion(decimals = 1) #' mtcars %>% correlate() %>% fashion(leading_zeros = TRUE) diff --git a/R/reshape.R b/R/reshape.R index 6988e7c..7c6e84a 100644 --- a/R/reshape.R +++ b/R/reshape.R @@ -16,6 +16,7 @@ #' @return A tbl or, if mirror = TRUE, a cor_df (see \code{\link{correlate}}). #' @export #' @examples +#' library(dplyr) #' x <- correlate(mtcars) #' focus(x, mpg, cyl) # Focus on correlations of mpg and cyl with all other variables #' focus(x, -disp, - mpg, mirror = TRUE) # Remove disp and mpg from columns and rows @@ -48,6 +49,7 @@ focus_ <- function(x, ..., .dots, mirror) { #' @return A tibble or, if mirror = TRUE, a correlation data frame. #' @export #' @examples +#' library(dplyr) #' any_greater_than <- function(x, val) { #' mean(abs(x), na.rm = TRUE) > val #' } diff --git a/README-combination-1.png b/README-combination-1.png deleted file mode 100644 index 6d2b2a2..0000000 Binary files a/README-combination-1.png and /dev/null differ diff --git a/README-combination-2.png b/README-combination-2.png deleted file mode 100644 index 8a283ff..0000000 Binary files a/README-combination-2.png and /dev/null differ diff --git a/README.Rmd b/README.Rmd index ae03c0c..e14da00 100644 --- a/README.Rmd +++ b/README.Rmd @@ -8,7 +8,7 @@ output: github_document knitr::opts_chunk$set( collapse = TRUE, comment = "#>", - fig.path = "README-" + fig.path = "tools/readme/" ) ``` @@ -24,7 +24,7 @@ knitr::opts_chunk$set( corrr is a package for exploring **corr**elations in **R**. It focuses on creating and working with **data frames** of correlations (instead of matrices) that can be easily explored via corrr functions or by leveraging tools like those in the [tidyverse](http://tidyverse.org/). This, along with the primary corrr functions, is represented below: - + You can install: diff --git a/README.md b/README.md index bf1dc63..7049d5d 100644 --- a/README.md +++ b/README.md @@ -1,59 +1,85 @@ + # corrr -[![Project Status: Active ? The project has reached a stable, usable state and is being actively developed.](http://www.repostatus.org/badges/latest/active.svg)](http://www.repostatus.org/#active) [![minimal R version](https://img.shields.io/badge/R%3E%3D-3.3.0-6666ff.svg)](https://cran.r-project.org/) [![CRAN\_Status\_Badge](http://www.r-pkg.org/badges/version/corrr)](https://cran.r-project.org/package=corrr) [![packageversion](https://img.shields.io/badge/Package%20version-0.2.1.9000-orange.svg?style=flat-square)](commits/master) [![Last-changedate](https://img.shields.io/badge/last%20change-2017--02--03-yellowgreen.svg)](/commits/master) [![Build Status](https://travis-ci.org/drsimonj/corrr.svg?branch=master)](https://travis-ci.org/drsimonj/corrr) [![Downloads](http://cranlogs.r-pkg.org/badges/grand-total/corrr)](http://cran.rstudio.com/web/packages/corrr/index.html) - -corrr is a package for exploring **corr**elations in **R**. It focuses on creating and working with **data frames** of correlations (instead of matrices) that can be easily explored via corrr functions or by leveraging tools like those in the [tidyverse](http://tidyverse.org/). This, along with the primary corrr functions, is represented below: - - +[![Project Status: Active ? The project has reached a stable, usable +state and is being actively +developed.](http://www.repostatus.org/badges/latest/active.svg)](http://www.repostatus.org/#active) +[![minimal R +version](https://img.shields.io/badge/R%3E%3D-3.3.0-6666ff.svg)](https://cran.r-project.org/) +[![CRAN\_Status\_Badge](http://www.r-pkg.org/badges/version/corrr)](https://cran.r-project.org/package=corrr) +[![packageversion](https://img.shields.io/badge/Package%20version-0.2.1.9000-orange.svg?style=flat-square)](commits/master) +[![Last-changedate](https://img.shields.io/badge/last%20change-2018--05--28-yellowgreen.svg)](/commits/master) +[![Build +Status](https://travis-ci.org/drsimonj/corrr.svg?branch=master)](https://travis-ci.org/drsimonj/corrr) +[![Downloads](http://cranlogs.r-pkg.org/badges/grand-total/corrr)](http://cran.rstudio.com/web/packages/corrr/index.html) + +corrr is a package for exploring **corr**elations in **R**. It focuses +on creating and working with **data frames** of correlations (instead of +matrices) that can be easily explored via corrr functions or by +leveraging tools like those in the [tidyverse](http://tidyverse.org/). +This, along with the primary corrr functions, is represented below: + + You can install: -- the latest released version from CRAN with + - the latest released version from CRAN with + + ``` r install.packages("corrr") ``` -- the latest development version from github with + - the latest development version from github +with + + ``` r install.packages("devtools") # run this line if devtools is not installed devtools::install_github("drsimonj/corrr") ``` -Using corrr ------------ +## Using corrr -Using `corrr` typically starts with `correlate()`, which acts like the base correlation function `cor()`. It differs by defaulting to pairwise deletion, and returning a correlation data frame (`cor_df`) of the following structure: +Using `corrr` typically starts with `correlate()`, which acts like the +base correlation function `cor()`. It differs by defaulting to pairwise +deletion, and returning a correlation data frame (`cor_df`) of the +following structure: -- A `tbl` with an additional class, `cor_df` -- An extra "rowname" column -- Standardised variances (the matrix diagonal) set to missing values (`NA`) so they can be ignored. + - A `tbl` with an additional class, `cor_df` + - An extra “rowname” column + - Standardised variances (the matrix diagonal) set to missing values + (`NA`) so they can be ignored. ### API -The corrr API is designed with data pipelines in mind (e.g., to use `%>%` from the magrittr package). After `correlate()`, the primary corrr functions take a `cor_df` as their first argument, and return a `cor_df` or `tbl` (or output like a plot). These functions serve one of three purposes: +The corrr API is designed with data pipelines in mind (e.g., to use +`%>%` from the magrittr package). After `correlate()`, the primary corrr +functions take a `cor_df` as their first argument, and return a `cor_df` +or `tbl` (or output like a plot). These functions serve one of three +purposes: Internal changes (`cor_df` out): -- `shave()` the upper or lower triangle (set to NA). -- `rearrange()` the columns and rows based on correlation strengths. + - `shave()` the upper or lower triangle (set to NA). + - `rearrange()` the columns and rows based on correlation strengths. Reshape structure (`tbl` or `cor_df` out): -- `focus()` on select columns and rows. -- `stretch()` into a long format. + - `focus()` on select columns and rows. + - `stretch()` into a long format. Output/visualisations (console/plot out): -- `fashion()` the correlations for pretty printing. -- `rplot()` the correlations with shapes in place of the values. -- `network_plot()` the correlations in a network. + - `fashion()` the correlations for pretty printing. + - `rplot()` the correlations with shapes in place of the values. + - `network_plot()` the correlations in a network. -Examples --------- +## Examples ``` r library(MASS) @@ -83,31 +109,30 @@ x <- correlate(d) class(x) #> [1] "cor_df" "tbl_df" "tbl" "data.frame" x -#> # A tibble: 6 × 7 -#> rowname v1 v2 v3 v4 v5 -#> -#> 1 v1 NA 0.70986371 0.709330652 0.0001947192 0.021359764 -#> 2 v2 0.7098637068 NA 0.697411266 -0.0132575510 0.009280530 -#> 3 v3 0.7093306516 0.69741127 NA -0.0252752456 0.001088652 -#> 4 v4 0.0001947192 -0.01325755 -0.025275246 NA 0.421380212 -#> 5 v5 0.0213597639 0.00928053 0.001088652 0.4213802123 NA -#> 6 v6 -0.0435135083 -0.03383145 -0.020057495 0.4424697437 0.425441795 -#> # ... with 1 more variables: v6 +#> # A tibble: 6 x 7 +#> rowname v1 v2 v3 v4 v5 v6 +#> +#> 1 v1 NA 0.710 0.709 0.000195 0.0214 -0.0435 +#> 2 v2 0.710 NA 0.697 -0.0133 0.00928 -0.0338 +#> 3 v3 0.709 0.697 NA -0.0253 0.00109 -0.0201 +#> 4 v4 0.000195 -0.0133 -0.0253 NA 0.421 0.442 +#> 5 v5 0.0214 0.00928 0.00109 0.421 NA 0.425 +#> 6 v6 -0.0435 -0.0338 -0.0201 0.442 0.425 NA ``` -As a `tbl`, we can use functions from data frame packages like `dplyr`, `tidyr`, `ggplot2`: +As a `tbl`, we can use functions from data frame packages like `dplyr`, +`tidyr`, `ggplot2`: ``` r library(dplyr) # Filter rows by correlation size x %>% filter(v1 > .6) -#> # A tibble: 2 × 7 -#> rowname v1 v2 v3 v4 v5 -#> -#> 1 v2 0.7098637 NA 0.6974113 -0.01325755 0.009280530 -#> 2 v3 0.7093307 0.6974113 NA -0.02527525 0.001088652 -#> # ... with 1 more variables: v6 +#> # A tibble: 2 x 7 +#> rowname v1 v2 v3 v4 v5 v6 +#> +#> 1 v2 0.710 NA 0.697 -0.0133 0.00928 -0.0338 +#> 2 v3 0.709 0.697 NA -0.0253 0.00109 -0.0201 ``` corrr functions work in pipelines (`cor_df` in; `cor_df` or `tbl` out): @@ -136,7 +161,7 @@ fashion(x) rplot(x) ``` -![](README-combination-1.png) +![](tools/readme/combination-1.png) ``` r @@ -148,4 +173,4 @@ datasets::airquality %>% #> Missing treated using: 'pairwise.complete.obs' ``` -![](README-combination-2.png) +![](tools/readme/combination-2.png) diff --git a/README_files/figure-markdown_github/combination-1.png b/README_files/figure-markdown_github/combination-1.png deleted file mode 100644 index f5ebab8..0000000 Binary files a/README_files/figure-markdown_github/combination-1.png and /dev/null differ diff --git a/README_files/figure-markdown_github/rplot-1.png b/README_files/figure-markdown_github/rplot-1.png deleted file mode 100644 index dc64868..0000000 Binary files a/README_files/figure-markdown_github/rplot-1.png and /dev/null differ diff --git a/README_files/figure-markdown_github/rplot_arranged-1.png b/README_files/figure-markdown_github/rplot_arranged-1.png deleted file mode 100644 index 977b29e..0000000 Binary files a/README_files/figure-markdown_github/rplot_arranged-1.png and /dev/null differ diff --git a/README_files/figure-markdown_github/rplot_arranged-2.png b/README_files/figure-markdown_github/rplot_arranged-2.png deleted file mode 100644 index 1843d71..0000000 Binary files a/README_files/figure-markdown_github/rplot_arranged-2.png and /dev/null differ diff --git a/README_files/figure-markdown_github/rplot_arranged-3.png b/README_files/figure-markdown_github/rplot_arranged-3.png deleted file mode 100644 index 0d777e2..0000000 Binary files a/README_files/figure-markdown_github/rplot_arranged-3.png and /dev/null differ diff --git a/README_files/figure-markdown_github/unnamed-chunk-3-1.png b/README_files/figure-markdown_github/unnamed-chunk-3-1.png deleted file mode 100644 index 9d5bfc7..0000000 Binary files a/README_files/figure-markdown_github/unnamed-chunk-3-1.png and /dev/null differ diff --git a/cran-comments.md b/cran-comments.md index 75788bc..6446124 100644 --- a/cran-comments.md +++ b/cran-comments.md @@ -1,23 +1,26 @@ -## Test environments -* local Windows 10 install, R 3.3.1 -* ubuntu 12.04.5 LTS (on travis-ci), R 3.3.1 -* win-builder (devel and release) +## Release summary -## R CMD check results +- `as_cordf` will coerce lists or matrices into correlation data frames if possible + +- `focus_if` enables conditional variable selection + +- Can use arithmetic operators (e.g., `+` or `-`) with correlation data frames + +- `correlate()` now supports data frame with a SQL back-end (`tbl_sql`) -Except for win-builder, there were no ERRORs, WARNINGs or NOTEs. +- Small breaking change: The `diagonal` argument of `as_matrix` and `as_matrix.cor_df` is now an optional argument rather than set to `1` by default -Via win-builder, there was 1 NOTE: +- Other improvements and fixes + +## Test environments +* local Windows 10 install, R 3.5.0 +* ubuntu 14.04 (on travis-ci) +* Ubuntu 14.04.5 LTS with RStudio Server, R 3.4.3 + +## R CMD check results - * checking CRAN incoming feasibility ... NOTE - Maintainer: 'Simon Jackson ' - - License components with restrictions and base license permitting such: - MIT + file LICENSE - File 'LICENSE': - YEAR: 2016 - COPYRIGHT HOLDER: Simon Jackson +- 0 errors | 0 warnings | 0 notes -## Downstream dependencies +## revdep check results -There are currently no downstream dependencies for this package. \ No newline at end of file +- 0 packages \ No newline at end of file diff --git a/man/fashion.Rd b/man/fashion.Rd index ddad5dd..94849a7 100644 --- a/man/fashion.Rd +++ b/man/fashion.Rd @@ -25,6 +25,7 @@ for signs) and the diagonal (or any NA) left blank. } \examples{ # Examples with correlate() +library(dplyr) mtcars \%>\% correlate() \%>\% fashion() mtcars \%>\% correlate() \%>\% fashion(decimals = 1) mtcars \%>\% correlate() \%>\% fashion(leading_zeros = TRUE) diff --git a/man/focus.Rd b/man/focus.Rd index dbcdcdd..a63f9cb 100644 --- a/man/focus.Rd +++ b/man/focus.Rd @@ -45,6 +45,7 @@ rows based on `\code{same}. For a complete list of methods for using this function, see \code{\link[dplyr]{select}}. } \examples{ +library(dplyr) x <- correlate(mtcars) focus(x, mpg, cyl) # Focus on correlations of mpg and cyl with all other variables focus(x, -disp, - mpg, mirror = TRUE) # Remove disp and mpg from columns and rows diff --git a/man/focus_if.Rd b/man/focus_if.Rd index f9175db..bf8d7a3 100644 --- a/man/focus_if.Rd +++ b/man/focus_if.Rd @@ -27,6 +27,7 @@ Apply a predicate function to each colum of correlations. Columns that evaluate to TRUE will be included in a call to \code{\link{focus}}. } \examples{ +library(dplyr) any_greater_than <- function(x, val) { mean(abs(x), na.rm = TRUE) > val } diff --git a/packrat/init.R b/packrat/init.R deleted file mode 100644 index 29aaa44..0000000 --- a/packrat/init.R +++ /dev/null @@ -1,217 +0,0 @@ -local({ - - ## Helper function to get the path to the library directory for a - ## given packrat project. - getPackratLibDir <- function(projDir = NULL) { - path <- file.path("packrat", "lib", R.version$platform, getRversion()) - - if (!is.null(projDir)) { - - ## Strip trailing slashes if necessary - projDir <- sub("/+$", "", projDir) - - ## Only prepend path if different from current working dir - if (!identical(normalizePath(projDir), normalizePath(getwd()))) - path <- file.path(projDir, path) - } - - path - } - - ## Ensure that we set the packrat library directory relative to the - ## project directory. Normally, this should be the working directory, - ## but we also use '.rs.getProjectDirectory()' if necessary (e.g. we're - ## rebuilding a project while within a separate directory) - libDir <- if (exists(".rs.getProjectDirectory")) - getPackratLibDir(.rs.getProjectDirectory()) - else - getPackratLibDir() - - ## Unload packrat in case it's loaded -- this ensures packrat _must_ be - ## loaded from the private library. Note that `requireNamespace` will - ## succeed if the package is already loaded, regardless of lib.loc! - if ("packrat" %in% loadedNamespaces()) - try(unloadNamespace("packrat"), silent = TRUE) - - if (suppressWarnings(requireNamespace("packrat", quietly = TRUE, lib.loc = libDir))) { - - # Check 'print.banner.on.startup' -- when NA and RStudio, don't print - print.banner <- packrat::get_opts("print.banner.on.startup") - if (print.banner == "auto" && is.na(Sys.getenv("RSTUDIO", unset = NA))) { - print.banner <- TRUE - } else { - print.banner <- FALSE - } - return(packrat::on(print.banner = print.banner)) - } - - ## Escape hatch to allow RStudio to handle bootstrapping. This - ## enables RStudio to provide print output when automagically - ## restoring a project from a bundle on load. - if (!is.na(Sys.getenv("RSTUDIO", unset = NA)) && - is.na(Sys.getenv("RSTUDIO_PACKRAT_BOOTSTRAP", unset = NA))) { - Sys.setenv("RSTUDIO_PACKRAT_BOOTSTRAP" = "1") - setHook("rstudio.sessionInit", function(...) { - # Ensure that, on sourcing 'packrat/init.R', we are - # within the project root directory - if (exists(".rs.getProjectDirectory")) { - owd <- getwd() - setwd(.rs.getProjectDirectory()) - on.exit(setwd(owd), add = TRUE) - } - source("packrat/init.R") - }) - return(invisible(NULL)) - } - - ## Bootstrapping -- only performed in interactive contexts, - ## or when explicitly asked for on the command line - if (interactive() || "--bootstrap-packrat" %in% commandArgs(TRUE)) { - - message("Packrat is not installed in the local library -- ", - "attempting to bootstrap an installation...") - - ## We need utils for the following to succeed -- there are calls to functions - ## in 'restore' that are contained within utils. utils gets loaded at the - ## end of start-up anyhow, so this should be fine - library("utils", character.only = TRUE) - - ## Install packrat into local project library - packratSrcPath <- list.files(full.names = TRUE, - file.path("packrat", "src", "packrat") - ) - - ## No packrat tarballs available locally -- try some other means of installation - if (!length(packratSrcPath)) { - - message("> No source tarball of packrat available locally") - - ## There are no packrat sources available -- try using a version of - ## packrat installed in the user library to bootstrap - if (requireNamespace("packrat", quietly = TRUE) && packageVersion("packrat") >= "0.2.0.99") { - message("> Using user-library packrat (", - packageVersion("packrat"), - ") to bootstrap this project") - } - - ## Couldn't find a user-local packrat -- try finding and using devtools - ## to install - else if (requireNamespace("devtools", quietly = TRUE)) { - message("> Attempting to use devtools::install_github to install ", - "a temporary version of packrat") - library(stats) ## for setNames - devtools::install_github("rstudio/packrat") - } - - ## Try downloading packrat from CRAN if available - else if ("packrat" %in% rownames(available.packages())) { - message("> Installing packrat from CRAN") - install.packages("packrat") - } - - ## Fail -- couldn't find an appropriate means of installing packrat - else { - stop("Could not automatically bootstrap packrat -- try running ", - "\"'install.packages('devtools'); devtools::install_github('rstudio/packrat')\"", - "and restarting R to bootstrap packrat.") - } - - # Restore the project, unload the temporary packrat, and load the private packrat - packrat::restore(prompt = FALSE, restart = TRUE) - - ## This code path only reached if we didn't restart earlier - unloadNamespace("packrat") - requireNamespace("packrat", lib.loc = libDir, quietly = TRUE) - return(packrat::on()) - - } - - ## Multiple packrat tarballs available locally -- try to choose one - ## TODO: read lock file and infer most appropriate from there; low priority because - ## after bootstrapping packrat a restore should do the right thing - if (length(packratSrcPath) > 1) { - warning("Multiple versions of packrat available in the source directory;", - "using packrat source:\n- ", shQuote(packratSrcPath)) - packratSrcPath <- packratSrcPath[[1]] - } - - - lib <- file.path("packrat", "lib", R.version$platform, getRversion()) - if (!file.exists(lib)) { - dir.create(lib, recursive = TRUE) - } - lib <- normalizePath(lib, winslash = "/") - - message("> Installing packrat into project private library:") - message("- ", shQuote(lib)) - - surround <- function(x, with) { - if (!length(x)) return(character()) - paste0(with, x, with) - } - - ## The following is performed because a regular install.packages call can fail - peq <- function(x, y) paste(x, y, sep = " = ") - installArgs <- c( - peq("pkgs", surround(packratSrcPath, with = "'")), - peq("lib", surround(lib, with = "'")), - peq("repos", "NULL"), - peq("type", surround("source", with = "'")) - ) - installCmd <- paste(sep = "", - "utils::install.packages(", - paste(installArgs, collapse = ", "), - ")") - - fullCmd <- paste( - surround(file.path(R.home("bin"), "R"), with = "\""), - "--vanilla", - "--slave", - "-e", - surround(installCmd, with = "\"") - ) - system(fullCmd) - - ## Tag the installed packrat so we know it's managed by packrat - ## TODO: should this be taking information from the lockfile? this is a bit awkward - ## because we're taking an un-annotated packrat source tarball and simply assuming it's now - ## an 'installed from source' version - - ## -- InstallAgent -- ## - installAgent <- 'InstallAgent: packrat 0.4.7-1' - - ## -- InstallSource -- ## - installSource <- 'InstallSource: source' - - packratDescPath <- file.path(lib, "packrat", "DESCRIPTION") - DESCRIPTION <- readLines(packratDescPath) - DESCRIPTION <- c(DESCRIPTION, installAgent, installSource) - cat(DESCRIPTION, file = packratDescPath, sep = "\n") - - # Otherwise, continue on as normal - message("> Attaching packrat") - library("packrat", character.only = TRUE, lib.loc = lib) - - message("> Restoring library") - restore(restart = FALSE) - - # If the environment allows us to restart, do so with a call to restore - restart <- getOption("restart") - if (!is.null(restart)) { - message("> Packrat bootstrap successfully completed. ", - "Restarting R and entering packrat mode...") - return(restart()) - } - - # Callers (source-erers) can define this hidden variable to make sure we don't enter packrat mode - # Primarily useful for testing - if (!exists(".__DONT_ENTER_PACKRAT_MODE__.") && interactive()) { - message("> Packrat bootstrap successfully completed. Entering packrat mode...") - packrat::on() - } - - Sys.unsetenv("RSTUDIO_PACKRAT_BOOTSTRAP") - - } - -}) diff --git a/packrat/packrat.lock b/packrat/packrat.lock deleted file mode 100644 index 5364b99..0000000 --- a/packrat/packrat.lock +++ /dev/null @@ -1,437 +0,0 @@ -PackratFormat: 1.4 -PackratVersion: 0.4.7.1 -RVersion: 3.3.1 -Repos: CRAN=https://cran.rstudio.com/, - CRANextra=http://www.stats.ox.ac.uk/pub/RWin - -Package: BH -Source: CRAN -Version: 1.60.0-2 -Hash: be2967bcff307e561d9ba17faf03205c - -Package: DBI -Source: CRAN -Version: 0.5-1 -Hash: 375869004db963f9915f2b8a49b4a718 - -Package: DEoptimR -Source: CRAN -Version: 1.0-6 -Hash: 0d74e13bdb47749dc511cee60e1a167e - -Package: R6 -Source: CRAN -Version: 2.1.3 -Hash: 1a8313c9df76d2a06aa27c13a4a71c73 - -Package: RColorBrewer -Source: CRAN -Version: 1.1-2 -Hash: c0d56cd15034f395874c870141870c25 - -Package: Rcpp -Source: CRAN -Version: 0.12.7 -Hash: f0ba7322cfb66f1b563462faa9c2b2ab - -Package: TSP -Source: CRAN -Version: 1.1-4 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+|:---------|:--|:-------|:----------|:---------------------------| +|corrr |* |0.3.0 |2018-06-28 |local (edgararuiz/corrr@NA) | +|covr | |3.1.0 |2018-05-18 |CRAN (R 3.5.0) | +|DBI | |1.0.0 |2018-05-02 |CRAN (R 3.5.0) | +|dbplyr | |1.2.1 |2018-02-19 |CRAN (R 3.5.0) | +|dplyr | |0.7.5 |2018-05-19 |CRAN (R 3.5.0) | +|ggplot2 | |2.2.1 |2016-12-30 |CRAN (R 3.5.0) | +|ggrepel | |0.8.0 |2018-05-09 |CRAN (R 3.5.0) | +|knitr | |1.20 |2018-02-20 |CRAN (R 3.5.0) | +|lazyeval | |0.2.1 |2017-10-29 |CRAN (R 3.5.0) | +|magrittr | |1.5 |2014-11-22 |CRAN (R 3.5.0) | +|purrr | |0.2.5 |2018-05-29 |CRAN (R 3.5.0) | +|rlang | |0.2.1 |2018-05-30 |CRAN (R 3.5.0) | +|rmarkdown | |1.10 |2018-06-11 |CRAN (R 3.5.0) | +|RSQLite | |2.1.1 |2018-05-06 |CRAN (R 3.5.0) | +|seriation | |1.2-3 |2018-02-05 |CRAN (R 3.5.0) | +|testthat | |2.0.0 |2017-12-13 |CRAN (R 3.5.0) | +|tibble | |1.4.2 |2018-01-22 |CRAN (R 3.5.0) | +|tidyr | |0.8.1 |2018-05-18 |CRAN (R 3.5.0) | + +# Check results + +0 packages + + + + diff --git a/revdep/check.R b/revdep/check.R new file mode 100644 index 0000000..2ea4dd9 --- /dev/null +++ b/revdep/check.R @@ -0,0 +1,5 @@ +library("devtools") + +revdep_check() +revdep_check_save_summary() +revdep_check_print_problems() \ No newline at end of file diff --git a/revdep/checks.rds b/revdep/checks.rds new file mode 100644 index 0000000..800b28e Binary files /dev/null and b/revdep/checks.rds differ diff --git a/revdep/problems.md b/revdep/problems.md new file mode 100644 index 0000000..14e3b58 --- /dev/null +++ b/revdep/problems.md @@ -0,0 +1,44 @@ +# Setup + +## Platform + +|setting |value | +|:--------|:----------------------------| +|version |R version 3.5.0 (2018-04-23) | +|system |x86_64, mingw32 | +|ui |RStudio (1.2.658) | +|language |(EN) | +|collate |English_United States.1252 | +|tz |America/Chicago | +|date |2018-06-28 | + +## Packages + +|package |* |version |date |source | +|:---------|:--|:-------|:----------|:---------------------------| +|corrr |* |0.3.0 |2018-06-28 |local (edgararuiz/corrr@NA) | +|covr | |3.1.0 |2018-05-18 |CRAN (R 3.5.0) | +|DBI | |1.0.0 |2018-05-02 |CRAN (R 3.5.0) | +|dbplyr | |1.2.1 |2018-02-19 |CRAN (R 3.5.0) | +|dplyr | |0.7.5 |2018-05-19 |CRAN (R 3.5.0) | +|ggplot2 | |2.2.1 |2016-12-30 |CRAN (R 3.5.0) | +|ggrepel | |0.8.0 |2018-05-09 |CRAN (R 3.5.0) | +|knitr | |1.20 |2018-02-20 |CRAN (R 3.5.0) | +|lazyeval | |0.2.1 |2017-10-29 |CRAN (R 3.5.0) | +|magrittr | |1.5 |2014-11-22 |CRAN (R 3.5.0) | +|purrr | |0.2.5 |2018-05-29 |CRAN (R 3.5.0) | +|rlang | |0.2.1 |2018-05-30 |CRAN (R 3.5.0) | +|rmarkdown | |1.10 |2018-06-11 |CRAN (R 3.5.0) | +|RSQLite | |2.1.1 |2018-05-06 |CRAN (R 3.5.0) | +|seriation | |1.2-3 |2018-02-05 |CRAN (R 3.5.0) | +|testthat | |2.0.0 |2017-12-13 |CRAN (R 3.5.0) | +|tibble | |1.4.2 |2018-01-22 |CRAN (R 3.5.0) | +|tidyr | |0.8.1 |2018-05-18 |CRAN (R 3.5.0) | + +# Check results + +0 packages with problems + + + + diff --git a/revdep/timing.md b/revdep/timing.md new file mode 100644 index 0000000..59483ca --- /dev/null +++ b/revdep/timing.md @@ -0,0 +1,5 @@ +# Check times + + + + diff --git a/tests/testthat.R b/tests/testthat.R index 4e54c93..26a2471 100644 --- a/tests/testthat.R +++ b/tests/testthat.R @@ -1,4 +1,5 @@ library(testthat) library(corrr) +library(dplyr) test_check("corrr") diff --git a/tools/readme/combination-1.png b/tools/readme/combination-1.png new file mode 100644 index 0000000..7be3aa8 Binary files /dev/null and b/tools/readme/combination-1.png differ diff --git a/tools/readme/combination-2.png b/tools/readme/combination-2.png new file mode 100644 index 0000000..84993b9 Binary files /dev/null and b/tools/readme/combination-2.png differ diff --git a/to-cor-df.png b/tools/readme/to-cor-df.png similarity index 100% rename from to-cor-df.png rename to tools/readme/to-cor-df.png