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---
title: "Theory-driven analysis for ecological data"
description: |
FRB-CESAB & GdR TheoMoDive training course
<br><br>
<a href="https://www.fondationbiodiversite.fr/en/the-frb-in-action/programs-and-projects/le-cesab/develop-skills/theory-driven-analysis-of-ecological-data/">
<img class="logo" src="https://raw.githubusercontent.com/theodatasci/.github/main/profile/banner-theodatasci_150dpi.png" style="width: 100%;" />
</a>
author:
- name: "Vincent Calcagno"
url: https://vcalcagnoresearch.wordpress.com/
affiliation: INRAE Institut Sophia Agrobiotech
affiliation_url: https://www6.paca.inrae.fr/institut-sophia-agrobiotech
orcid_id: 0000-0002-5781-967X
- name: "Emanuel A. Fronhofer"
url: https://www.emanuelfronhofer.net/
affiliation: CNRS ISEM
affiliation_url: https://isem-evolution.fr/en/
orcid_id: 0000-0002-2219-784X
- name: "Isabelle Gounand"
url: https://isabellegounand.wordpress.com/
affiliation: CNRS iEES-Paris
affiliation_url: https://iees-paris.fr/teams/interaction-networks/
orcid_id: 0000-0002-0675-3973
- name: "Claire Jacquet"
url: https://clairejacquet.weebly.com/
affiliation: CNRS ISEM
affiliation_url: https://isem-evolution.fr/en/
orcid_id: 0000-0002-7913-0689
- name: "Sonia Kéfi"
url: https://scholar.google.nl/citations?user=JcRmX4EAAAAJ&hl=fr
affiliation: CNRS ISEM
affiliation_url: https://isem-evolution.fr/en/
orcid_id: 0000-0002-9678-7770
- name: "François Massol"
url: https://sites.google.com/a/polytechnique.org/francoismassol/home
affiliation: CNRS CIIL
affiliation_url: https://www.ciil.fr/
orcid_id: 0000-0002-4098-955X
date: "`r format(Sys.Date(), '%m-%d-%Y')`"
site: distill::distill_website
---
```{r setup, include=FALSE}
knitr::opts_chunk$set(echo = FALSE)
```
::: {.box-info}
`r fontawesome::fa_i("lightbulb")`
**Pre-registration opens each spring and training course is provided each winter. Subscribe to the [FRB-CESAB newsletter](https://www.fondationbiodiversite.fr/en/newsletter/) to stay informed. More information is available on the [FRB-CESAB website](https://www.fondationbiodiversite.fr/en/the-frb-in-action/programs-and-projects/le-cesab/develop-skills/theory-driven-analysis-of-ecological-data/).**
:::
<br />
The objective of this five-day workshop, co-organized by the
[FRB-CESAB](https://www.fondationbiodiversite.fr/en/about-the-foundation/le-cesab/)
and the
[GdR TheoMoDive](https://sete-moulis-cnrs.fr/en/research/centre-for-biodiversity-theory-and-modelling/theomodive)
is to train young researchers in theory-based approaches to model ecological data
(e.g. temporal series, macroecology, interaction and trophic network, etc.).
**N.B.** This training course is **in English** and slides are available in the tab `Courses/`.
<br />
## Program
<table>
<tr style="background-color:#f0f2ed">
<td rowspan="3">**Monday**</td>
<td>**_Speakers_**: Isabelle Gounand, Sonia Kéfi & Vincent Calcagno </td>
</tr>
<tr style="background-color:#f0f2ed">
<td>Icebreaker & Introduction to the week</td>
</tr>
<tr style="background-color:#f0f2ed">
<td>Mathematical modeling & Theory
<!--
<span class="btn"><a href="courses/theo-modeling/intro_why_models.html">SLIDES</a></span><span class="btn"><a href="courses/theo-modeling/TAED_2024_DEF2.pdf">SLIDES</a></span><span class="btn"><a href="courses/theo-modeling/TDAED_stats_2024.pdf">SLIDES</a></span>
-->
</td>
</tr>
<!--
<tr style="background-color:#f0f2ed">
<td>**_Guest seminar_**: Kim Cuddington (Waterloo Univ., Canada) <span class="btn"><a href="https://www.ecotheory.ca/theorydata/datatheory.html">SLIDES</a></span></td>
</tr>
-->
<tr>
<td rowspan="2">**Tuesday**</td>
<td>**_Speakers_**: Emanuel Fronhofer</td>
</tr>
<tr>
<td>Temporal series and dynamics in ecology
<!--
<span class="btn"><a href="time-series/emmanuel/fronhofer_day2_cesab_theomodive.pdf">SLIDES</a></span>
-->
</td>
</tr>
<tr style="background-color:#f0f2ed">
<td rowspan="3">**Wednesday**</td>
<td>**_Speakers_**: Vincent Calcagno & Quentin Petitjean</td>
</tr>
<tr style="background-color:#f0f2ed">
<td>Spatial data, macro-ecology and co-occurrences
<!--
<span class="btn"><a href="courses/spatial-data/TDAED_day3_slides_2024.pdf">SLIDES</a></span>
-->
</td>
</tr>
<tr style="background-color:#f0f2ed">
<td>**_Guest seminar_**: Davide Martinetti (INRAE, Avignon)
<!--
<span class="btn"><a href="courses/spatial-data/Martinetti_SDM_PopilliaJaponica2.pdf">SLIDES</a></span>
-->
</td>
</tr>
<tr>
<td rowspan="4">**Thursday**</td>
<td>**_Speakers_**: François Massol & Claire Jacquet</td>
</tr>
<tr>
<td>Interaction networks, trophic networks & complexity
<!--
<span class="btn"><a href="courses/networks/Day4_Networks_2023.pdf">SLIDES</a></span><span class="btn"><a href="courses/networks/Claire/empirical_food_webs_2023.pdf">SLIDES</a></span>
-->
</td>
</tr>
<tr>
<td>**_Guest speaker_**: Matthieu Barbier (CIRAD, Montpellier & INTP)
<!--
<span class="btn"><a href="courses/networks/matthieu/MB_cesab.pdf">SLIDES</a></span>
-->
</td>
</tr>
<tr>
<td>**_Guest seminar_**: Sonia Kéfi (CNRS, Montpellier)
<!--
<span class="btn"><a href="courses/networks/2022_05_cesab_Kefi.pdf">SLIDES</a></span>
-->
</td>
</tr>
<tr style="background-color:#f0f2ed">
<td>**Friday**</td>
<td>Subgroups projects</td>
</tr>
</table>
<br/>
## Prerequisites
If you want ready-to-use working environment for R, follow this [tutorial](https://frbcesab.github.io/rsetup). For this course, you don't need to install `git` and `Docker`.
<br/>
## See also
Discover the other training courses provided by the FRB-CESAB and its partners: <https://frbcesab.github.io/training-courses/>
## Citation {.appendix}
Calcagno V, Fronhofer EA, Gounand I, Jacquet C, Kéfi C & Massol F (2025)
FRB-CESAB & GdR TheoMoDive training course: Theory-driven analysis for ecological data.