-
Notifications
You must be signed in to change notification settings - Fork 0
/
Copy pathreferences.bib
341 lines (305 loc) · 11 KB
/
references.bib
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
@article{tian1997echolocation,
title={Echolocation signals of the greater horseshoe bat (Rhinolophus ferrumequinum) in transfer flight and during landing},
author={Tian, Biao and Schnitzler, Hans-Ulrich},
journal={The Journal of the Acoustical Society of America},
volume={101},
number={4},
pages={2347--2364},
year={1997},
publisher={Acoustical Society of America}
}
@article{mcfee2018open,
title={Open-source practices for music signal processing research: Recommendations for transparent, sustainable, and reproducible audio research},
author={McFee, Brian and Kim, Jong Wook and Cartwright, Mark and Salamon, Justin and Bittner, Rachel M and Bello, Juan Pablo},
journal={IEEE Signal Processing Magazine},
volume={36},
number={1},
pages={128--137},
year={2018},
publisher={IEEE}
}
@article{bakervincent2019,
author = {Ed Baker and Sarah Vincent},
title = {A deafening silence: a lack of data and reproducibility in published bioacoustics research?},
volume = {7},
year = {2019},
doi = {10.3897/BDJ.7.e36783},
issn = {1314-2836},
pages = {e36783},
URL = {https://doi.org/10.3897/BDJ.7.e36783},
eprint = {https://doi.org/10.3897/BDJ.7.e36783},
journal = {Biodiversity Data Journal}
}
@article{hage2014ambient,
title={Ambient noise causes independent changes in distinct spectro-temporal features of echolocation calls in horseshoe bats},
author={Hage, Steffen R and Jiang, Tinglei and Berquist, Sean W and Feng, Jiang and Metzner, Walter},
journal={Journal of Experimental Biology},
volume={217},
number={14},
pages={2440--2444},
year={2014},
publisher={The Company of Biologists Ltd}
}
@article{hage2013ambient,
title={Ambient noise induces independent shifts in call frequency and amplitude within the Lombard effect in echolocating bats},
author={Hage, Steffen R and Jiang, Tinglei and Berquist, Sean W and Feng, Jiang and Metzner, Walter},
journal={Proceedings of the National Academy of Sciences},
volume={110},
number={10},
pages={4063--4068},
year={2013},
publisher={National Acad Sciences}
}
@article{elemans2011superfast,
title={Superfast muscles set maximum call rate in echolocating bats},
author={Elemans, Coen PH and Mead, Andrew F and Jakobsen, Lasse and Ratcliffe, John M},
journal={Science},
volume={333},
number={6051},
pages={1885--1888},
year={2011},
publisher={American Association for the Advancement of Science}
}
@incollection{metzner2016ultrasound,
title={Ultrasound production, emission, and reception},
author={Metzner, Walter and M{\"u}ller, Rolf},
booktitle={Bat Bioacoustics},
pages={55--91},
year={2016},
publisher={Springer}
}
@incollection{green1979analysis,
title={The analysis of animal communication},
author={Green, Steven and Marler, Peter},
booktitle={Social behavior and communication},
pages={73--158},
year={1979},
publisher={Springer}
}
@article{griffin1958listening,
title={Listening in the dark: the acoustic orientation of bats and men.},
author={Griffin, Donald R},
year={1958},
publisher={Yale Univer. Press}
}
@article{schoeppler2018precise,
title={Precise Doppler shift compensation in the hipposiderid bat, Hipposideros armiger},
author={Schoeppler, Diana and Schnitzler, Hans-Ulrich and Denzinger, Annette},
journal={Scientific reports},
volume={8},
number={1},
pages={1--11},
year={2018},
publisher={Nature Publishing Group}
}
@article{lu2020echolocating,
title={Echolocating bats exhibit differential amplitude compensation for noise interference at a sub-call level},
author={Lu, Manman and Zhang, Guimin and Luo, Jinhong},
journal={Journal of Experimental Biology},
volume={223},
number={19},
year={2020},
publisher={The Company of Biologists Ltd}
}
@article{fawcett2015echolocation,
title={Echolocation in the bat, Rhinolophus capensis: the influence of clutter, conspecifics and prey on call design and intensity},
author={Fawcett, Kayleigh and Jacobs, David S and Surlykke, Annemarie and Ratcliffe, John M},
journal={Biology Open},
volume={4},
number={6},
pages={693--701},
year={2015},
publisher={The Company of Biologists Ltd}
}
@article{fenton2012evolution,
title={Evolution of high duty cycle echolocation in bats},
author={Fenton, M Brock and Faure, Paul A and Ratcliffe, John M},
journal={Journal of Experimental Biology},
volume={215},
number={17},
pages={2935--2944},
year={2012},
publisher={The Company of Biologists Ltd}
}
@article{schnitzler2011auditory,
title={Auditory fovea and Doppler shift compensation: adaptations for flutter detection in echolocating bats using CF-FM signals},
author={Schnitzler, Hans-Ulrich and Denzinger, Annette},
journal={Journal of Comparative Physiology A},
volume={197},
number={5},
pages={541--559},
year={2011},
publisher={Springer}
}
@article{vater2003development,
title={Development of echolocation calls in the mustached bat, Pteronotus parnellii},
author={Vater, M and Kossl, M and Foeller, E and Coro, F and Mora, E and Russell, IJ},
journal={Journal of Neurophysiology},
volume={90},
number={4},
pages={2274--2290},
year={2003},
publisher={American Physiological Society}
}
@article{gessinger2019unusual,
title={Unusual echolocation behaviour of the common sword-nosed bat Lonchorhina aurita: an adaptation to aerial insectivory in a phyllostomid bat?},
author={Gessinger, Gloria and Gonzalez-Terrazas, Tania P and Page, Rachel A and Jung, Kirsten and Tschapka, Marco},
journal={Royal Society open science},
volume={6},
number={7},
pages={182165},
year={2019},
publisher={The Royal Society}
}
@article{fenton2013questions,
title={Questions, ideas and tools: lessons from bat echolocation},
author={Fenton, M Brock},
journal={Animal Behaviour},
volume={85},
number={5},
pages={869--879},
year={2013},
publisher={Elsevier}
}
@incollection{metzner2016ultrasound,
title={Ultrasound production, emission, and reception},
author={Metzner, Walter and M{\"u}ller, Rolf},
booktitle={Bat Bioacoustics},
pages={55--91},
year={2016},
publisher={Springer}
}
@article{2020SciPy,
author = {{Virtanen}, Pauli and {Gommers}, Ralf and {Oliphant},
Travis E. and {Haberland}, Matt and {Reddy}, Tyler and
{Cournapeau}, David and {Burovski}, Evgeni and {Peterson}, Pearu
and {Weckesser}, Warren and {Bright}, Jonathan and {van der Walt},
St{\'e}fan J. and {Brett}, Matthew and {Wilson}, Joshua and
{Jarrod Millman}, K. and {Mayorov}, Nikolay and {Nelson}, Andrew
R.~J. and {Jones}, Eric and {Kern}, Robert and {Larson}, Eric and
{Carey}, CJ and {Polat}, {\.I}lhan and {Feng}, Yu and {Moore},
Eric W. and {Vand erPlas}, Jake and {Laxalde}, Denis and
{Perktold}, Josef and {Cimrman}, Robert and {Henriksen}, Ian and
{Quintero}, E.~A. and {Harris}, Charles R and {Archibald}, Anne M.
and {Ribeiro}, Ant{\^o}nio H. and {Pedregosa}, Fabian and
{van Mulbregt}, Paul and {Contributors}, SciPy 1. 0},
title = "{SciPy 1.0: Fundamental Algorithms for Scientific
Computing in Python}",
journal = {Nature Methods},
year = "2020",
volume={17},
pages={261--272},
adsurl = {https://rdcu.be/b08Wh},
doi = {https://doi.org/10.1038/s41592-019-0686-2},
}
@book{van1995python,
title={Python reference manual},
author={Van Rossum, Guido and Drake Jr, Fred L},
year={1995},
publisher={Centrum voor Wiskunde en Informatica Amsterdam}
}
@book{numpy,
title={A guide to NumPy},
author={Oliphant, Travis E},
volume={1},
year={2006},
publisher={Trelgol Publishing USA}
}
@article{matplotlib,
title={Matplotlib: A 2D graphics environment},
author={Hunter, John D},
journal={Computing in science \& engineering},
volume={9},
number={3},
pages={90--95},
year={2007},
publisher={IEEE}
}
@inproceedings{pandas,
title={Data structures for statistical computing in python},
author={McKinney, Wes and others},
booktitle={Proceedings of the 9th Python in Science Conference},
volume={445},
pages={51--56},
year={2010},
organization={Austin, TX}
}
@software{tftb,
author = {Deshpande, Jaidev},
title = {tftb},
url = {https://pypi.org/project/tftb/},
version = {0.1.1},
date = {2019-09-09},
}
@conference{jupyter,
Title = {Jupyter Notebooks -- a publishing format for reproducible computational workflows},
Author = {Thomas Kluyver and Benjamin Ragan-Kelley and Fernando P{\'e}rez and Brian Granger and Matthias Bussonnier and Jonathan Frederic and Kyle Kelley and Jessica Hamrick and Jason Grout and Sylvain Corlay and Paul Ivanov and Dami{\'a}n Avila and Safia Abdalla and Carol Willing},
Booktitle = {Positioning and Power in Academic Publishing: Players, Agents and Agendas},
Editor = {F. Loizides and B. Schmidt},
Organization = {IOS Press},
Pages = {87 - 90},
Year = {2016}
}
@book{rmarkdown,
title = {R Markdown: The Definitive Guide},
author = {Yihui Xie and J.J. Allaire and Garrett Grolemund},
publisher = {Chapman and Hall/CRC},
address = {Boca Raton, Florida},
year = {2018},
note = {ISBN 9781138359338},
url = {https://bookdown.org/yihui/rmarkdown},
}
@software{soundfile,
author = {Bastian Bechtold and Matthias Geier},
title = {SoundFile},
url = {https://github.com/bastibe/SoundFile},
version = {0.10.3},
year={2019}
}
@article{fu2018systematic,
title={A systematic method for isolating, tracking and discriminating time-frequency components of bat echolocation calls},
author={Fu, Yanqing and Kloepper, Laura N},
journal={The Journal of the Acoustical Society of America},
volume={143},
number={2},
pages={716--726},
year={2018},
publisher={Acoustical Society of America}
}
@article{kopsinis2010time,
title={Time-frequency and advanced frequency estimation techniques for the investigation of bat echolocation calls},
author={Kopsinis, Yannis and Aboutanios, Elias and Waters, Dean A and McLaughlin, Steve},
journal={The Journal of the Acoustical Society of America},
volume={127},
number={2},
pages={1124--1134},
year={2010},
publisher={Acoustical Society of America}
}
@book{boashash2015time,
title={Time-frequency signal analysis and processing: a comprehensive reference},
author={Boashash, Boualem},
year={2015},
publisher={Academic Press}
}
@unpublished{hbcpaper,
author={Mysuru Rajagopalachari, Neetash and Beleyur, Thejasvi and Krishna, Aditya and Goerlitz, Holger R.},
year=2020,
notes="in prep."}
@article{brumm2017measurement,
title={Measurement artefacts lead to false positives in the study of birdsong in noise},
author={Brumm, Henrik and Zollinger, Sue Anne and Niemel{\"a}, Petri T and Sprau, Philipp},
journal={Methods in Ecology and Evolution},
volume={8},
number={11},
pages={1617--1625},
year={2017},
publisher={Wiley Online Library}
}
@manual{birdcalleg,
author = {online manual, itsfm},
title = {itsfm online user guide: basic examples},
date = {November 16, 2011},
url = {https://itsfm.readthedocs.io/en/latest/gallery_dir/z_bird_eg.html#sphx-glr-gallery-dir-z-bird-eg-py},
pubstate = {December 27, 2020},
}