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DataBase Issue - Aggregate DB - UID: uloap #25

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Farbodch opened this issue Jun 23, 2024 · 0 comments
Open

DataBase Issue - Aggregate DB - UID: uloap #25

Farbodch opened this issue Jun 23, 2024 · 0 comments

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@Farbodch
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Farbodch commented Jun 23, 2024 •
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The following DB has x2 folders in its ./spatial subfolder, each with their own distinct image_ & scalefactors_ files, and cannot be parsed into the visium reader.
Note: This is an aggregate DB, and its subsections already exist in our scripts/database.

uloap__10X__Visium__Mouse__brain__20220714__v2.0.0 db on 10x website

The subsections are:

3s126__10X__Visium__Mouse__brain__20220713__v2.0.0 Mouse Brain Coronal Section 1 (FFPE)
p1yrb__10X__Visium__Mouse__brain__20220713__v2.0.0 Mouse Brain Coronal Section 2 (FFPE)

Refer to #11
@Farbodch Farbodch changed the title DataBase Issue - Multiple Section - UID: uloap DataBase Issue - Aggregate DB - UID: uloap Jun 23, 2024
@Farbodch Farbodch mentioned this issue Jun 23, 2024
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@timtreis timtreis mentioned this issue Jun 26, 2024
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@Farbodch