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Optimise PC regression #408

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Optimise PC regression #408

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Commits on Apr 22, 2024

  1. add numpy linreg function and use in pcr

    @mumichae
    mumichae committed Apr 22, 2024
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  2. allow configuring linreg method for pcr methods

    @mumichae
    mumichae committed Apr 22, 2024
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  3. simplify numpy linreg function

    @mumichae
    mumichae committed Apr 22, 2024
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  4. add tests for different linreg implementations

    @mumichae
    mumichae committed Apr 22, 2024
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  5. set PCA recomputation to False by default

    @mumichae
    mumichae committed Apr 22, 2024
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  6. use multithreading for linear regression and add tdqm

    @mumichae
    mumichae committed Apr 22, 2024
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  7. Merge branch 'main' into optimise_pcr

    @mumichae
    mumichae authored Apr 22, 2024
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  8. add durations to test command

    @mumichae
    mumichae committed Apr 22, 2024
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  9. Merge branch 'optimise_pcr' of github.com:theislab/scib into optimise… 

    …_pcr
    @mumichae
    mumichae committed Apr 22, 2024
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  10. add durations flag to pytest command

    @mumichae
    mumichae committed Apr 22, 2024
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  11. add min duration flag

    @mumichae
    mumichae committed Apr 22, 2024
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Commits on Apr 26, 2024

  1. add comments for ThreadPoolExecutore run

    @mumichae
    mumichae committed Apr 26, 2024
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Commits on Apr 27, 2024

  1. allow to specify n_threads and linreg algorithm

    @mumichae
    mumichae committed Apr 27, 2024
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  2. add keywords to cell cycle scoring

    @mumichae
    mumichae committed Apr 27, 2024
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Commits on Apr 28, 2024

  1. add multiple threading in pcr test

    @mumichae
    mumichae committed Apr 28, 2024
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Commits on Aug 7, 2024

  1. use nanmean

    @mumichae
    mumichae committed Aug 7, 2024
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  2. test cell cycle score with numpy linreg

    @mumichae
    mumichae committed Aug 7, 2024
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Commits on Aug 12, 2024

  1. use more memory-efficient implementation of ThreadPool

    @mumichae
    mumichae committed Aug 12, 2024
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Commits on Sep 25, 2024

  1. fix cases where there are no residuals

    @mumichae
    mumichae committed Sep 25, 2024
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