Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

cell_type still 'Unknown' after training with scANVI #259

Open
robertzeibich opened this issue Nov 17, 2024 · 0 comments
Open

cell_type still 'Unknown' after training with scANVI #259

robertzeibich opened this issue Nov 17, 2024 · 0 comments

Comments

@robertzeibich
Copy link

robertzeibich commented Nov 17, 2024

I am using the non-neuronal hippocampal cells from the human cell atlas (HCA) as a reference and publicly available non-neuronal and neuronal hippocampal cells as a query.

I used the following approach.

HCA
Image

Publicly available data
Image

cell_type still 'Unknow' after prediction. Would you happen to know why? Is there a better approach annotating my cells using the HCA as a reference?

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant