diff --git a/README.md b/README.md index 23a922b..7121e8a 100644 --- a/README.md +++ b/README.md @@ -2,18 +2,18 @@ GitHub Dashboard ================ ![](https://github.com/gadenbuie/status/workflows/Render%20Status/badge.svg) -2024-11-08 12:11:16 UTC +2024-11-09 12:10:40 UTC | Repo | Stars | Subscribers | Issues | Forks | Status | Commit | |:----------------------------------------------------------------------------------------------|------:|------------:|-------:|------:|:--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| -| [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 773 | 18 | 70 | 182 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292800) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292810) [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292801) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292802) | 343c7e | -| [theislab/scvelo](https://github.com/theislab/scvelo) | 417 | 13 | 60 | 102 | [![](https://github.com/theislab/scvelo/workflows/Check%20Build/badge.svg)](https://github.com/theislab/scvelo/actions/runs/11127835313) [![](https://github.com/theislab/scvelo/workflows/CI/badge.svg)](https://github.com/theislab/scvelo/actions/runs/11127835314) | 22b6e7 | -| [theislab/scvelo](https://github.com/theislab/scvelo) | 417 | 13 | 60 | 102 | [![](https://github.com/theislab/scvelo/workflows/Release/badge.svg)](https://github.com/theislab/scvelo/actions/runs/8317755189) | b2f31b | +| [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 775 | 18 | 70 | 182 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292800) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292810) [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292801) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292802) | 343c7e | +| [theislab/scvelo](https://github.com/theislab/scvelo) | 418 | 13 | 60 | 102 | [![](https://github.com/theislab/scvelo/workflows/Check%20Build/badge.svg)](https://github.com/theislab/scvelo/actions/runs/11127835313) [![](https://github.com/theislab/scvelo/workflows/CI/badge.svg)](https://github.com/theislab/scvelo/actions/runs/11127835314) | 22b6e7 | +| [theislab/scvelo](https://github.com/theislab/scvelo) | 418 | 13 | 60 | 102 | [![](https://github.com/theislab/scvelo/workflows/Release/badge.svg)](https://github.com/theislab/scvelo/actions/runs/8317755189) | b2f31b | | [theislab/cellrank](https://github.com/theislab/cellrank) | 347 | 8 | 19 | 46 | [![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/11655942095) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/11656027619) | 82248b | | [theislab/cellrank](https://github.com/theislab/cellrank) | 347 | 8 | 19 | 46 | [![](https://github.com/theislab/cellrank/workflows/Deployment/badge.svg)](https://github.com/theislab/cellrank/actions/runs/10872921434) | b5e993 | -| [theislab/scib](https://github.com/theislab/scib) | 300 | 14 | 42 | 63 | [![](https://github.com/theislab/scib/workflows/Deployment/badge.svg)](https://github.com/theislab/scib/actions/runs/10287985783) | 5547cd | -| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 226 | 5 | 49 | 20 | [![](https://github.com/theislab/ehrapy/workflows/Labeler/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/11707462789) [![](https://github.com/theislab/ehrapy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/11707462774) [![](https://github.com/theislab/ehrapy/workflows/Test/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/11707462777) [![](https://github.com/theislab/ehrapy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/11707462778) [![](https://github.com/theislab/ehrapy/workflows/Check%20Build/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/11707462776) | 3809b5 | -| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 226 | 5 | 49 | 20 | [![](https://github.com/theislab/ehrapy/workflows/Release/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/10306217903) | e0e081 | +| [theislab/scib](https://github.com/theislab/scib) | 301 | 14 | 42 | 63 | [![](https://github.com/theislab/scib/workflows/Deployment/badge.svg)](https://github.com/theislab/scib/actions/runs/10287985783) | 5547cd | +| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 227 | 5 | 49 | 20 | [![](https://github.com/theislab/ehrapy/workflows/Labeler/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/11707462789) [![](https://github.com/theislab/ehrapy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/11707462774) [![](https://github.com/theislab/ehrapy/workflows/Test/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/11707462777) [![](https://github.com/theislab/ehrapy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/11707462778) [![](https://github.com/theislab/ehrapy/workflows/Check%20Build/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/11707462776) | 3809b5 | +| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 227 | 5 | 49 | 20 | [![](https://github.com/theislab/ehrapy/workflows/Release/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/10306217903) | e0e081 | | [theislab/zellkonverter](https://github.com/theislab/zellkonverter) | 150 | 5 | 12 | 27 | [![](https://github.com/theislab/zellkonverter/workflows/.github/workflows/check-bioc.yml/badge.svg)](https://github.com/theislab/zellkonverter/actions/runs/11437005171) | 67cea1 | | [theislab/sfaira](https://github.com/theislab/sfaira) | 134 | 8 | 167 | 11 | [![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/9457340256) | 55bcbb | | [theislab/sfaira](https://github.com/theislab/sfaira) | 134 | 8 | 167 | 11 | [![](https://github.com/theislab/sfaira/workflows/Build%20sfaira%20Package/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672388) [![](https://github.com/theislab/sfaira/workflows/Create%20sfaira%20data-loader%20templates/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672382) [![](https://github.com/theislab/sfaira/workflows/Run%20bandit/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672385) [![](https://github.com/theislab/sfaira/workflows/Run%20flake8%20linting/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672384) | 5fcf93 | @@ -25,7 +25,7 @@ GitHub Dashboard | [theislab/mubind](https://github.com/theislab/mubind) | 27 | 3 | 29 | 0 | [![](https://github.com/theislab/mubind/workflows/Python%20package/badge.svg)](https://github.com/theislab/mubind/actions/runs/10632591185) | 3f62f8 | | [theislab/hadge](https://github.com/theislab/hadge) | 24 | 3 | 14 | 6 | [![](https://github.com/theislab/hadge/workflows/sphinx-docs/badge.svg)](https://github.com/theislab/hadge/actions/runs/7569650236) | 1ed105 | | [theislab/spapros](https://github.com/theislab/spapros) | 23 | 3 | 13 | 6 | [![](https://github.com/theislab/spapros/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/spapros/actions/runs/11670726228) [![](https://github.com/theislab/spapros/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/spapros/actions/runs/11670726226) | 9091f0 | -| [theislab/spapros](https://github.com/theislab/spapros) | 23 | 3 | 13 | 6 | [![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/8661094687) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/11734408592) | e8a37c | +| [theislab/spapros](https://github.com/theislab/spapros) | 23 | 3 | 13 | 6 | [![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/8661094687) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/11752119815) | e8a37c | | [theislab/multimil](https://github.com/theislab/multimil) | 18 | 5 | 4 | 3 | [![](https://github.com/theislab/multimil/workflows/Check%20Build/badge.svg)](https://github.com/theislab/multimil/actions/runs/11370023712) [![](https://github.com/theislab/multimil/workflows/Test/badge.svg)](https://github.com/theislab/multimil/actions/runs/11624599035) | 445402 | | [theislab/geome](https://github.com/theislab/geome) | 16 | 3 | 3 | 4 | [![](https://github.com/theislab/geome/workflows/Test/badge.svg)](https://github.com/theislab/geome/actions/runs/10868284169) | 402a0a | | [theislab/scanpydoc](https://github.com/theislab/scanpydoc) | 12 | 6 | 3 | 6 | [![](https://github.com/theislab/scanpydoc/workflows/Python%20tests/badge.svg)](https://github.com/theislab/scanpydoc/actions/runs/11679506192) | 62ffeb | @@ -33,8 +33,9 @@ GitHub Dashboard | [theislab/moscot_notebooks](https://github.com/theislab/moscot_notebooks) | 7 | 1 | 5 | 3 | [![](https://github.com/theislab/moscot_notebooks/workflows/lint/badge.svg)](https://github.com/theislab/moscot_notebooks/actions/runs/11655987796) | 210765 | | [theislab/cellrank_notebooks](https://github.com/theislab/cellrank_notebooks) | 6 | 4 | 1 | 5 | [![](https://github.com/theislab/cellrank_notebooks/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank_notebooks/actions/runs/6686677756) | 677784 | | [theislab/ehrapy-datasets](https://github.com/theislab/ehrapy-datasets) | 5 | 2 | 0 | 2 | [![](https://github.com/theislab/ehrapy-datasets/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy-datasets/actions/runs/8356857136) | e441a5 | -| [theislab/gh-dashboard](https://github.com/theislab/gh-dashboard) | 2 | 2 | 0 | 0 | [![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/11741728585) | 7be163 | -| [theislab/DRVI](https://github.com/theislab/DRVI) | 1 | 3 | 1 | 0 | [![](https://github.com/theislab/DRVI/workflows/Release/badge.svg)](https://github.com/theislab/DRVI/actions/runs/11706775818) | c8f62b | +| [theislab/gh-dashboard](https://github.com/theislab/gh-dashboard) | 2 | 2 | 0 | 0 | [![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/11756032804) | 138ffd | +| [theislab/DRVI](https://github.com/theislab/DRVI) | 1 | 3 | 0 | 0 | [![](https://github.com/theislab/DRVI/workflows/Release/badge.svg)](https://github.com/theislab/DRVI/actions/runs/11706775818) | c8f62b | +| [theislab/DRVI](https://github.com/theislab/DRVI) | 1 | 3 | 0 | 0 | [![](https://github.com/theislab/DRVI/workflows/Check%20Build/badge.svg)](https://github.com/theislab/DRVI/actions/runs/11755217661) [![](https://github.com/theislab/DRVI/workflows/Test/badge.svg)](https://github.com/theislab/DRVI/actions/runs/11755217662) | e2ee32 | | [theislab/spatialdata-db](https://github.com/theislab/spatialdata-db) | 1 | 1 | 25 | 0 | [![](https://github.com/theislab/spatialdata-db/workflows/Check%20Build/badge.svg)](https://github.com/theislab/spatialdata-db/actions/runs/11362121634) [![](https://github.com/theislab/spatialdata-db/workflows/Test/badge.svg)](https://github.com/theislab/spatialdata-db/actions/runs/11624599954) | 5fc4ad | | [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/Build%20idtrack%20Package/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702245) [![](https://github.com/theislab/idtrack/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702249) [![](https://github.com/theislab/idtrack/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702241) [![](https://github.com/theislab/idtrack/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702236) [![](https://github.com/theislab/idtrack/workflows/Run%20idtrack%20Tests/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702246) | ec9e9f | @@ -42,12 +43,12 @@ GitHub Dashboard | Repo | Stars | Subscribers | Issues | Forks | |:------------------------------------------------------------------------------------------------------------------------------------|------:|------------:|-------:|------:| -| [theislab/single-cell-tutorial](https://github.com/theislab/single-cell-tutorial) | 1388 | 30 | 21 | 458 | -| [theislab/scarches](https://github.com/theislab/scarches) | 335 | 12 | 50 | 51 | +| [theislab/single-cell-tutorial](https://github.com/theislab/single-cell-tutorial) | 1389 | 30 | 21 | 458 | +| [theislab/scarches](https://github.com/theislab/scarches) | 335 | 12 | 51 | 51 | | [theislab/scgen](https://github.com/theislab/scgen) | 266 | 9 | 28 | 56 | +| [theislab/single-cell-transformer-papers](https://github.com/theislab/single-cell-transformer-papers) | 248 | 13 | 27 | 28 | | [theislab/dca](https://github.com/theislab/dca) | 247 | 11 | 32 | 71 | -| [theislab/single-cell-transformer-papers](https://github.com/theislab/single-cell-transformer-papers) | 246 | 13 | 27 | 28 | -| [theislab/paga](https://github.com/theislab/paga) | 206 | 10 | 24 | 33 | +| [theislab/paga](https://github.com/theislab/paga) | 207 | 10 | 24 | 33 | | [theislab/diffxpy](https://github.com/theislab/diffxpy) | 193 | 7 | 108 | 23 | | [theislab/kBET](https://github.com/theislab/kBET) | 154 | 8 | 9 | 23 | | [theislab/scCODA](https://github.com/theislab/scCODA) | 150 | 9 | 8 | 24 | @@ -58,10 +59,10 @@ GitHub Dashboard | [theislab/scib-pipeline](https://github.com/theislab/scib-pipeline) | 66 | 7 | 16 | 27 | | [theislab/nicheformer](https://github.com/theislab/nicheformer) | 62 | 4 | 14 | 2 | | [theislab/AutoGeneS](https://github.com/theislab/AutoGeneS) | 56 | 6 | 6 | 8 | -| [theislab/scib-reproducibility](https://github.com/theislab/scib-reproducibility) | 54 | 6 | 4 | 13 | +| [theislab/scib-reproducibility](https://github.com/theislab/scib-reproducibility) | 55 | 6 | 4 | 13 | | [theislab/trVAE](https://github.com/theislab/trVAE) | 54 | 6 | 3 | 12 | | [theislab/spatial_scog_workshop_2022](https://github.com/theislab/spatial_scog_workshop_2022) | 49 | 9 | 0 | 27 | -| [theislab/scTab](https://github.com/theislab/scTab) | 44 | 4 | 0 | 7 | +| [theislab/scTab](https://github.com/theislab/scTab) | 45 | 4 | 0 | 8 | | [theislab/pseudodynamics](https://github.com/theislab/pseudodynamics) | 39 | 7 | 0 | 6 | | [theislab/tcellmatch](https://github.com/theislab/tcellmatch) | 37 | 9 | 3 | 7 | | [theislab/scArches-reproducibility](https://github.com/theislab/scArches-reproducibility) | 33 | 4 | 5 | 0 | diff --git a/index.html b/index.html index 3306dfb..0550b65 100644 --- a/index.html 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- + - + diff --git a/repos.csv b/repos.csv index 553f767..722996a 100644 --- a/repos.csv +++ b/repos.csv @@ -12,7 +12,10 @@ theislab,2022_Tritschler_pancreas_cross_species,theislab/2022_Tritschler_pancrea theislab,AutoGeneS,theislab/AutoGeneS,56,6,6,8,FALSE,https://github.com/theislab/AutoGeneS,56,NA,NA,NA theislab,CFGen,theislab/CFGen,6,1,2,4,FALSE,https://github.com/theislab/CFGen,6,NA,NA,NA theislab,Covid_meta_analysis,theislab/Covid_meta_analysis,24,8,2,11,FALSE,https://github.com/theislab/Covid_meta_analysis,24,NA,NA,NA -theislab,DRVI,theislab/DRVI,1,3,1,0,FALSE,https://github.com/theislab/DRVI,1,c8f62b2b18e4922bbe4526b879db3109225f9a9e,Update readme,[![](https://github.com/theislab/DRVI/workflows/Release/badge.svg)](https://github.com/theislab/DRVI/actions/runs/11706775818) +theislab,DRVI,theislab/DRVI,1,3,0,0,FALSE,https://github.com/theislab/DRVI,1,c8f62b2b18e4922bbe4526b879db3109225f9a9e,Update readme,[![](https://github.com/theislab/DRVI/workflows/Release/badge.svg)](https://github.com/theislab/DRVI/actions/runs/11706775818) +theislab,DRVI,theislab/DRVI,1,3,0,0,FALSE,https://github.com/theislab/DRVI,1,e2ee3232aa945197891d2eefed32238f5021c032,"Fix compilation of docs for readthedocs (#2) + +Fix compilation of docs",[![](https://github.com/theislab/DRVI/workflows/Check%20Build/badge.svg)](https://github.com/theislab/DRVI/actions/runs/11755217661) [![](https://github.com/theislab/DRVI/workflows/Test/badge.svg)](https://github.com/theislab/DRVI/actions/runs/11755217662) theislab,DRVI_reproducibility,theislab/DRVI_reproducibility,0,3,0,0,FALSE,https://github.com/theislab/DRVI_reproducibility,0,NA,NA,NA theislab,DeepCollisionalCrossSection,theislab/DeepCollisionalCrossSection,14,5,1,6,FALSE,https://github.com/theislab/DeepCollisionalCrossSection,14,NA,NA,NA theislab,DeepRT,theislab/DeepRT,30,2,11,10,FALSE,https://github.com/theislab/DeepRT,30,NA,NA,NA @@ -149,14 +152,14 @@ theislab,diffxpy,theislab/diffxpy,193,7,108,23,FALSE,https://github.com/theislab theislab,diffxpy_tutorials,theislab/diffxpy_tutorials,10,8,4,2,FALSE,https://github.com/theislab/diffxpy_tutorials,10,NA,NA,NA theislab,disent,theislab/disent,6,3,0,0,FALSE,https://github.com/theislab/disent,6,NA,NA,NA theislab,edgepy,theislab/edgepy,0,3,0,0,FALSE,https://github.com/theislab/edgepy,0,NA,NA,NA -theislab,ehrapy,theislab/ehrapy,226,5,49,20,FALSE,https://github.com/theislab/ehrapy,226,3809b5f909cdad36506114f46e5bb6adc4713cdb,"Cotributing typo fix (#821) +theislab,ehrapy,theislab/ehrapy,227,5,49,20,FALSE,https://github.com/theislab/ehrapy,227,3809b5f909cdad36506114f46e5bb6adc4713cdb,"Cotributing typo fix (#821) * typo fix, to be more in line with previous mention * added syntax error * remove syntax error",[![](https://github.com/theislab/ehrapy/workflows/Labeler/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/11707462789) [![](https://github.com/theislab/ehrapy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/11707462774) [![](https://github.com/theislab/ehrapy/workflows/Test/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/11707462777) [![](https://github.com/theislab/ehrapy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/11707462778) [![](https://github.com/theislab/ehrapy/workflows/Check%20Build/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/11707462776) -theislab,ehrapy,theislab/ehrapy,226,5,49,20,FALSE,https://github.com/theislab/ehrapy,226,e0e081a3308add30d6ba55fcd8b28566e35e9386,Update fig1,[![](https://github.com/theislab/ehrapy/workflows/Release/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/10306217903) +theislab,ehrapy,theislab/ehrapy,227,5,49,20,FALSE,https://github.com/theislab/ehrapy,227,e0e081a3308add30d6ba55fcd8b28566e35e9386,Update fig1,[![](https://github.com/theislab/ehrapy/workflows/Release/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/10306217903) theislab,ehrapy-cli,theislab/ehrapy-cli,1,3,0,0,FALSE,https://github.com/theislab/ehrapy-cli,1,NA,NA,NA theislab,ehrapy-datasets,theislab/ehrapy-datasets,5,2,0,2,FALSE,https://github.com/theislab/ehrapy-datasets,5,e441a5d0912396064360799f10de973b377ba6a5,"Merge pull request #23 from theislab/diabetes-update @@ -176,7 +179,7 @@ theislab,gastrulation_analysis,theislab/gastrulation_analysis,10,4,0,1,FALSE,htt theislab,geome,theislab/geome,16,3,3,4,FALSE,https://github.com/theislab/geome,16,402a0a8cdb442fee8666416e5f163c4098fa0c07,"Merge pull request #55 from theislab/fix/toarray Fix Sparse "".A"" Not Found",[![](https://github.com/theislab/geome/workflows/Test/badge.svg)](https://github.com/theislab/geome/actions/runs/10868284169) -theislab,gh-dashboard,theislab/gh-dashboard,2,2,0,0,FALSE,https://github.com/theislab/gh-dashboard,2,7be163e524c530b9f7440bc7d5b2d28119cd66ce,[status] 2024-11-07 12:13:40 UTC,[![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/11741728585) +theislab,gh-dashboard,theislab/gh-dashboard,2,2,0,0,FALSE,https://github.com/theislab/gh-dashboard,2,138ffd1cdc4e2134168e7cc9f2d81aec7fdec663,[status] 2024-11-08 12:12:32 UTC,[![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/11756032804) theislab,graph_abstraction,theislab/graph_abstraction,26,8,0,10,FALSE,https://github.com/theislab/graph_abstraction,26,NA,NA,NA theislab,graphcompass,theislab/graphcompass,33,2,1,0,FALSE,https://github.com/theislab/graphcompass,33,7c455146402592d7ba73173a72d2abc4d5f7737b,initial commit,[![](https://github.com/theislab/graphcompass/workflows/Labeler/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989244) [![](https://github.com/theislab/graphcompass/workflows/Release/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989237) theislab,greatpy,theislab/greatpy,7,3,4,0,FALSE,https://github.com/theislab/greatpy,7,NA,NA,NA @@ -223,7 +226,7 @@ theislab,ncem_tutorials,theislab/ncem_tutorials,12,4,6,0,FALSE,https://github.co theislab,neural_organoid_atlas,theislab/neural_organoid_atlas,15,5,2,1,FALSE,https://github.com/theislab/neural_organoid_atlas,15,NA,NA,NA theislab,nicheformer,theislab/nicheformer,62,4,14,2,FALSE,https://github.com/theislab/nicheformer,62,NA,NA,NA theislab,organoid_dexamethason_stimulation,theislab/organoid_dexamethason_stimulation,0,3,0,1,FALSE,https://github.com/theislab/organoid_dexamethason_stimulation,0,NA,NA,NA -theislab,paga,theislab/paga,206,10,24,33,FALSE,https://github.com/theislab/paga,206,NA,NA,NA +theislab,paga,theislab/paga,207,10,24,33,FALSE,https://github.com/theislab/paga,207,NA,NA,NA theislab,pancreas-targeted_pharmacology,theislab/pancreas-targeted_pharmacology,0,6,1,2,FALSE,https://github.com/theislab/pancreas-targeted_pharmacology,0,NA,NA,NA theislab,pancreatic-endocrinogenesis,theislab/pancreatic-endocrinogenesis,6,3,0,6,FALSE,https://github.com/theislab/pancreatic-endocrinogenesis,6,NA,NA,NA theislab,pdac_analysis,theislab/pdac_analysis,0,2,0,0,FALSE,https://github.com/theislab/pdac_analysis,0,NA,NA,NA @@ -243,7 +246,7 @@ theislab,scCODA_reproducibility,theislab/scCODA_reproducibility,8,5,0,1,FALSE,ht theislab,scPoli_legacy,theislab/scPoli_legacy,2,5,0,0,FALSE,https://github.com/theislab/scPoli_legacy,2,NA,NA,NA theislab,scPoli_reproduce,theislab/scPoli_reproduce,13,3,2,4,FALSE,https://github.com/theislab/scPoli_reproduce,13,NA,NA,NA theislab,scProtVelo,theislab/scProtVelo,0,1,0,0,FALSE,https://github.com/theislab/scProtVelo,0,NA,NA,NA -theislab,scTab,theislab/scTab,44,4,0,7,FALSE,https://github.com/theislab/scTab,44,NA,NA,NA +theislab,scTab,theislab/scTab,45,4,0,8,FALSE,https://github.com/theislab/scTab,45,NA,NA,NA theislab,sc_analysis_template,theislab/sc_analysis_template,3,3,0,0,FALSE,https://github.com/theislab/sc_analysis_template,3,NA,NA,NA theislab,sc_ketamine_analysis,theislab/sc_ketamine_analysis,0,4,0,0,FALSE,https://github.com/theislab/sc_ketamine_analysis,0,NA,NA,NA theislab,sc_mae,theislab/sc_mae,1,2,0,0,FALSE,https://github.com/theislab/sc_mae,1,NA,NA,NA @@ -259,12 +262,12 @@ updates: - [github.com/astral-sh/ruff-pre-commit: v0.7.1 → v0.7.2](https://github.com/astral-sh/ruff-pre-commit/compare/v0.7.1...v0.7.2) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",[![](https://github.com/theislab/scanpydoc/workflows/Python%20tests/badge.svg)](https://github.com/theislab/scanpydoc/actions/runs/11679506192) -theislab,scarches,theislab/scarches,335,12,50,51,FALSE,https://github.com/theislab/scarches,335,NA,NA,NA +theislab,scarches,theislab/scarches,335,12,51,51,FALSE,https://github.com/theislab/scarches,335,NA,NA,NA theislab,scarches_notebooks,theislab/scarches_notebooks,0,3,0,0,FALSE,https://github.com/theislab/scarches_notebooks,0,NA,NA,NA theislab,scatac_poisson_reproducibility,theislab/scatac_poisson_reproducibility,9,3,0,0,FALSE,https://github.com/theislab/scatac_poisson_reproducibility,9,NA,NA,NA theislab,scgen,theislab/scgen,266,9,28,56,FALSE,https://github.com/theislab/scgen,266,NA,NA,NA theislab,scgen-reproducibility,theislab/scgen-reproducibility,21,4,6,8,FALSE,https://github.com/theislab/scgen-reproducibility,21,NA,NA,NA -theislab,scib,theislab/scib,300,14,42,63,FALSE,https://github.com/theislab/scib,NA,5547cd1f6b24eed7499c6492bf5c1ef4e2ef9f7a,"Skip labels before loop (#394) +theislab,scib,theislab/scib,301,14,42,63,FALSE,https://github.com/theislab/scib,NA,5547cd1f6b24eed7499c6492bf5c1ef4e2ef9f7a,"Skip labels before loop (#394) * Skip labels before loop @@ -274,8 +277,8 @@ theislab,scib,theislab/scib,300,14,42,63,FALSE,https://github.com/theislab/scib, Co-authored-by: Michaela Müller <51025211+mumichae@users.noreply.github.com>",[![](https://github.com/theislab/scib/workflows/Deployment/badge.svg)](https://github.com/theislab/scib/actions/runs/10287985783) theislab,scib-pipeline,theislab/scib-pipeline,66,7,16,27,FALSE,https://github.com/theislab/scib-pipeline,66,NA,NA,NA -theislab,scib-reproducibility,theislab/scib-reproducibility,54,6,4,13,FALSE,https://github.com/theislab/scib-reproducibility,54,NA,NA,NA -theislab,scvelo,theislab/scvelo,417,13,60,102,FALSE,https://github.com/theislab/scvelo,417,22b6e7e6cdb3c321c5a1be4ab2f29486ba01ab4f,"Update logging (#1281) +theislab,scib-reproducibility,theislab/scib-reproducibility,55,6,4,13,FALSE,https://github.com/theislab/scib-reproducibility,55,NA,NA,NA +theislab,scvelo,theislab/scvelo,418,13,60,102,FALSE,https://github.com/theislab/scvelo,418,22b6e7e6cdb3c321c5a1be4ab2f29486ba01ab4f,"Update logging (#1281) * Move logging to dedicated module @@ -299,7 +302,7 @@ submodule, local imports do not work anymore. * Remove redundant function definition * Remove `print_passed_time`",[![](https://github.com/theislab/scvelo/workflows/Check%20Build/badge.svg)](https://github.com/theislab/scvelo/actions/runs/11127835313) [![](https://github.com/theislab/scvelo/workflows/CI/badge.svg)](https://github.com/theislab/scvelo/actions/runs/11127835314) -theislab,scvelo,theislab/scvelo,417,13,60,102,FALSE,https://github.com/theislab/scvelo,417,b2f31b345641efdccd39fbcb8c0beaa0014b4b88,"Update `pyproject.toml` (#1226) +theislab,scvelo,theislab/scvelo,418,13,60,102,FALSE,https://github.com/theislab/scvelo,418,b2f31b345641efdccd39fbcb8c0beaa0014b4b88,"Update `pyproject.toml` (#1226) Fix package directory.",[![](https://github.com/theislab/scvelo/workflows/Release/badge.svg)](https://github.com/theislab/scvelo/actions/runs/8317755189) theislab,scvelo_notebooks,theislab/scvelo_notebooks,31,2,4,13,FALSE,https://github.com/theislab/scvelo_notebooks,31,NA,NA,NA @@ -311,7 +314,7 @@ theislab,sfaira-site,theislab/sfaira-site,0,4,0,0,FALSE,https://github.com/theis theislab,sfaira_benchmarks,theislab/sfaira_benchmarks,0,3,0,0,FALSE,https://github.com/theislab/sfaira_benchmarks,0,NA,NA,NA theislab,sfaira_extension,theislab/sfaira_extension,0,3,1,0,FALSE,https://github.com/theislab/sfaira_extension,0,NA,NA,NA theislab,sfaira_tutorials,theislab/sfaira_tutorials,6,4,4,2,FALSE,https://github.com/theislab/sfaira_tutorials,6,NA,NA,NA -theislab,single-cell-best-practices,theislab/single-cell-best-practices,773,18,70,182,FALSE,https://github.com/theislab/single-cell-best-practices,773,343c7e0a9fa9dbe98283faba070cf1426dab71f3,"Fixed some typos (#303) +theislab,single-cell-best-practices,theislab/single-cell-best-practices,775,18,70,182,FALSE,https://github.com/theislab/single-cell-best-practices,775,343c7e0a9fa9dbe98283faba070cf1426dab71f3,"Fixed some typos (#303) * fix additional ""does"" @@ -338,8 +341,8 @@ theislab,single-cell-best-practices,theislab/single-cell-best-practices,773,18,7 * fix typo * fix typo",[![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292800) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292810) [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292801) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292802) -theislab,single-cell-transformer-papers,theislab/single-cell-transformer-papers,246,13,27,28,FALSE,https://github.com/theislab/single-cell-transformer-papers,246,NA,NA,NA -theislab,single-cell-tutorial,theislab/single-cell-tutorial,1388,30,21,458,FALSE,https://github.com/theislab/single-cell-tutorial,1388,NA,NA,NA +theislab,single-cell-transformer-papers,theislab/single-cell-transformer-papers,248,13,27,28,FALSE,https://github.com/theislab/single-cell-transformer-papers,248,NA,NA,NA +theislab,single-cell-tutorial,theislab/single-cell-tutorial,1389,30,21,458,FALSE,https://github.com/theislab/single-cell-tutorial,1389,NA,NA,NA theislab,singlecell_proteomics,theislab/singlecell_proteomics,5,5,6,3,FALSE,https://github.com/theislab/singlecell_proteomics,5,NA,NA,NA theislab,spapros,theislab/spapros,23,3,13,6,FALSE,https://github.com/theislab/spapros,23,9091f0ce9224d7f01430c7b31f03550ecc1d99dd,"[DEPENDABOT]: Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.11.0 @@ -357,7 +360,7 @@ updated-dependencies: Signed-off-by: dependabot[bot] ",[![](https://github.com/theislab/spapros/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/spapros/actions/runs/11670726228) [![](https://github.com/theislab/spapros/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/spapros/actions/runs/11670726226) theislab,spapros,theislab/spapros,23,3,13,6,FALSE,https://github.com/theislab/spapros,23,e8a37c9e78039920a0792fc04f426ab062dbbf88,"Merge pull request #321 from theislab/patch_precommit -pre commit correction of readthedocs.yml",[![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/8661094687) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/11734408592) +pre commit correction of readthedocs.yml",[![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/8661094687) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/11752119815) theislab,spapros-pipeline,theislab/spapros-pipeline,7,2,0,0,FALSE,https://github.com/theislab/spapros-pipeline,7,NA,NA,NA theislab,spapros-smk,theislab/spapros-smk,0,2,0,1,FALSE,https://github.com/theislab/spapros-smk,0,NA,NA,NA theislab,spapros_reproducibility,theislab/spapros_reproducibility,0,1,0,1,FALSE,https://github.com/theislab/spapros_reproducibility,0,NA,NA,NA
theislab/single-cell-best-practices773775 18 70 182
theislab/scvelo417418 13 60 102
theislab/scvelo417418 13 60 102
theislab/scib300301 14 42 63
theislab/ehrapy226227 5 49 20
theislab/ehrapy226227 5 49 20 13 6 - e8a37c
2 0 07be163138ffd
theislab/DRVI 1 310 0 c8f62b
theislab/DRVI1300 +e2ee32
theislab/spatialdata-db 1 1 5fc4ad
theislab/idtrack 0 1
theislab/single-cell-tutorial13881389 30 21 458 theislab/scarches 335 125051 51
56
theislab/single-cell-transformer-papers248132728
theislab/dca 247 11 32 71
theislab/single-cell-transformer-papers246132728
theislab/paga206207 10 24 33
theislab/scib-reproducibility5455 6 4 13
theislab/scTab4445 4 078
theislab/pseudodynamics