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TypeError: full_like() got an unexpected keyword argument 'shape' when running de.test.wald() #212
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Hi @niklaslang thanks for the issue, could you post a full or slightly longer error trace, please? |
Thanks for getting back to me so quickly!
|
@davidsebfischer this is an environment error that we cannot figure out how to fix. Dirty fix: @niklaslang is now using my environment 😂 Kind of confusing. |
Thanks @Zethson I would guess it s about dask vs sparse version then looking at the error trace. |
Yeah, that's possible. @niklaslang could try The latest dask release is dask 2021.11.2. Would fit because it was released on the 19th of November this year. |
Hi David,
After using diffxpy for quite some time now, I am using it on a new machine now and
I'm running into the following the error when running diffxpy's
de.test.wald()
:de.test.wald(data = adata_raw.X, formula_loc = '~ 1 + treatment', factor_loc_totest = 'treatment', gene_names = adata_raw.var_names, sample_description = adata_raw.obs, noise_model = 'nb', size_factors = 'n_counts_scaled')
TypeError: full_like() got an unexpected keyword argument 'shape'
I'm running diffxpy==0.7.4 and batchglm==0.7.4 as well as
scanpy==1.8.1 anndata==0.7.6 umap==0.5.1 numpy==1.20.3 scipy==1.7.1 pandas==1.3.3 scikit-learn==1.0.1 statsmodels==0.12.2 pynndescent==0.5.4.
Any help is greatly appreciated. Thank you so much!
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