You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Hello,
On the latest master f18a4e6 , I was trying to test the FastK with a small test data. Then I got the following Segmentation fault. Do you have any idea about how to fix it? Thank you.
$ pwd
/home/jaruga/git/FASTK
$ gcc --version
gcc (GCC) 12.2.1 20220819 (Red Hat 12.2.1-1)
Copyright (C) 2022 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
$ make
$ cat fastk_source.fasta
>FastK input source
ACTG
$ ./FastK -v fastk_source.fasta
Partitioning 1 .fasta file into 4 parts
File is so small will use only 1 thread
Determining minimizer scheme & partition for fastk_source
FastK: Warming Sequences are on average smaller than 1.5x k-mer size!
Estimate -0.036K 40-mers
Handling data in a single block
Using 5-minimizers with 1024 core prefixes
Phase 1: Partitioning K-mers into 1 Super-mer Files
There are 1 reads totalling 4 bps
Part: 40-mer super-mers ave. length
0: 0 0 NA
Sum: 0 0 NA
Range 0 - 0
Resources for phase: 0.000u 0.001s 0.001w 127.8%
Phase 2: Sorting & Counting K-mers in 1 blocks
Processing block 1: Sorting super-mers Segmentation fault (core dumped)
The text was updated successfully, but these errors were encountered:
Hello,
On the latest master f18a4e6 , I was trying to test the
FastK
with a small test data. Then I got the following Segmentation fault. Do you have any idea about how to fix it? Thank you.The text was updated successfully, but these errors were encountered: